AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380018035.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018035.01.T01 MTR_4g072110 78.546 564 97 7 1 558 1 546 0.0 873
MsG0380018035.01.T01 MTR_3g117590 87.010 408 22 2 139 546 27 403 0.0 705
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018035.01.T01 AT2G16570 84.792 480 72 1 79 558 80 558 0.0 842
MsG0380018035.01.T01 AT4G34740 83.811 488 76 2 72 558 68 553 0.0 842
MsG0380018035.01.T01 AT4G38880 71.933 481 131 4 59 537 47 525 0.0 715

Find 111 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCCCAATTCTGTTGTATT+TGG 0.096765 3:-103566975 MsG0380018035.01.T01:CDS
ATTATTGGGTCTTGTTATTA+TGG 0.169325 3:-103566576 MsG0380018035.01.T01:CDS
GTTATAGCTGTTCCTGATTC+TGG 0.192514 3:-103566879 MsG0380018035.01.T01:CDS
ATCTTCATCTCTTTCTGATT+TGG 0.197096 3:+103566297 None:intergenic
TCACAGAAGATTAGAGATTT+TGG 0.203480 3:-103566759 MsG0380018035.01.T01:CDS
CAGAAAGAGATGAAGATTAT+TGG 0.205620 3:-103566291 MsG0380018035.01.T01:CDS
ATTGCATGTCCACCAATTAT+TGG 0.249163 3:-103566591 MsG0380018035.01.T01:CDS
GCTGAGATTAAGGAATTTAT+TGG 0.256050 3:-103566504 MsG0380018035.01.T01:CDS
AAGATTGTTTGGTGAAATAT+TGG 0.274673 3:-103566931 MsG0380018035.01.T01:CDS
GGTTTATCCTGGTGAAATTA+TGG 0.280156 3:-103567084 MsG0380018035.01.T01:CDS
TCAACAATTCTCGCTATAAA+AGG 0.280350 3:+103567287 None:intergenic
GTGAATGGGAATGTGTTGTT+AGG 0.284914 3:+103567779 None:intergenic
TCTTCATCTCTTTCTGATTT+GGG 0.291726 3:+103566298 None:intergenic
AGAAATGAACTTGAAGAATC+TGG 0.293200 3:-103567377 MsG0380018035.01.T01:CDS
TAATAACAAGACCCAATAAT+TGG 0.293975 3:+103566579 None:intergenic
AATGAGTGTAGCTGAGATTA+AGG 0.295289 3:-103566514 MsG0380018035.01.T01:CDS
AGAATGAGAAAGTGAGGTTT+TGG 0.296994 3:+103567838 None:intergenic
TTTCCCAAATACAACAGAAT+TGG 0.301159 3:+103566971 None:intergenic
TAGCAGAGACGAGAGGCTTC+TGG 0.302805 3:+103567683 None:intergenic
CCGGTTCGTGCTGTTCTTGA+AGG 0.320056 3:-103566717 MsG0380018035.01.T01:CDS
TGCCCAATTCTGTTGTATTT+GGG 0.324405 3:-103566974 MsG0380018035.01.T01:CDS
TTCTGTTATGCTTGTTTCAC+TGG 0.324666 3:-103566414 MsG0380018035.01.T01:CDS
TGTGTTGTTAGGGTTGTTAT+TGG 0.329634 3:+103567790 None:intergenic
TTGCATGTCCACCAATTATT+GGG 0.345820 3:-103566590 MsG0380018035.01.T01:CDS
TGACCAATGGCTAAGGTTCC+AGG 0.358511 3:+103567521 None:intergenic
GTTGCTGTCAGAGATCCTTT+TGG 0.373947 3:-103567206 MsG0380018035.01.T01:CDS
TTTGTTGCAGGTTACCGTTT+TGG 0.378465 3:-103567449 MsG0380018035.01.T01:CDS
TTTAGGTTTGTTGAGGGAAG+AGG 0.397497 3:+103567946 None:intergenic
TTAAGTTCAGTAGGTTCAAC+AGG 0.399551 3:+103566384 None:intergenic
TGGTTTGAAGGACTTTGTTA+TGG 0.401995 3:+103567600 None:intergenic
TTCCCAAATACAACAGAATT+GGG 0.403442 3:+103566972 None:intergenic
GTGCTGTTCTTGAAGGGAAA+AGG 0.406661 3:-103566710 MsG0380018035.01.T01:CDS
TATGAATCAAGAAGATTGTT+TGG 0.412509 3:-103566942 MsG0380018035.01.T01:CDS
CTAATCAAACCCTGTTGAAA+AGG 0.417806 3:+103566816 None:intergenic
TCTGGTGTTGTTGCTGCACT+TGG 0.419203 3:-103566861 MsG0380018035.01.T01:CDS
CGTGAAGAATGTGGCGTTGT+TGG 0.421219 3:-103567719 MsG0380018035.01.T01:CDS
AAAGTCCTTCAAACCATTAC+CGG 0.424078 3:-103567593 MsG0380018035.01.T01:CDS
TGAATGGGAATGTGTTGTTA+GGG 0.428275 3:+103567780 None:intergenic
AAGGACTTTGTTATGGTTGA+CGG 0.431778 3:+103567607 None:intergenic
AGAGAGTTTAGGTTTGTTGA+GGG 0.448031 3:+103567940 None:intergenic
GCAGCAACAACACCAGAATC+AGG 0.452380 3:+103566867 None:intergenic
TCCGTTGGTGTTGCTCATAA+TGG 0.454130 3:-103567425 MsG0380018035.01.T01:CDS
ATAACTACATCACAATCAAC+AGG 0.456568 3:+103566897 None:intergenic
ACAAAACTCCGTCAATTACC+TGG 0.467661 3:-103567539 MsG0380018035.01.T01:CDS
TAGCGGCGATGTTTGTGAAT+GGG 0.471858 3:+103567765 None:intergenic
TGCTGTTCTTGAAGGGAAAA+GGG 0.475172 3:-103566709 MsG0380018035.01.T01:CDS
AACGAGGCCAACGCCGGTAA+TGG 0.479513 3:+103567580 None:intergenic
GGATAGTTTGAAGAAGTTGT+TGG 0.482382 3:-103566454 MsG0380018035.01.T01:CDS
TCCTGGTGAAATTATGGTTG+TGG 0.482820 3:-103567078 MsG0380018035.01.T01:CDS
CTTGGTTATGCTGCAAAAGC+TGG 0.485841 3:-103566843 MsG0380018035.01.T01:CDS
TTCGTCGTCGTCATCATTAG+CGG 0.486523 3:+103567748 None:intergenic
GTTGAGGGAAGAGGAAGAGA+GGG 0.493244 3:+103567955 None:intergenic
CCTTCAAGAACAGCACGAAC+CGG 0.494340 3:+103566717 None:intergenic
TTCTTCAAGTTCATTTCTCA+AGG 0.496817 3:+103567382 None:intergenic
AAGAGAGTTTAGGTTTGTTG+AGG 0.497209 3:+103567939 None:intergenic
GATAGTTTGAAGAAGTTGTT+GGG 0.498781 3:-103566453 MsG0380018035.01.T01:CDS
TGTTGAGGGAAGAGGAAGAG+AGG 0.501159 3:+103567954 None:intergenic
GATATCAACTCTTCAGAGCT+AGG 0.501424 3:+103566543 None:intergenic
AACAAGTGTTGGCGGTTGAA+TGG 0.508842 3:+103567897 None:intergenic
CGGTTCGTGCTGTTCTTGAA+GGG 0.509292 3:-103566716 MsG0380018035.01.T01:CDS
GTTGTAAGAATGAGAAAGTG+AGG 0.509919 3:+103567832 None:intergenic
TCTGTGGACGGTGGATTGAA+TGG 0.513186 3:-103566336 MsG0380018035.01.T01:CDS
AAACGGTAACCTGCAACAAA+AGG 0.514148 3:+103567452 None:intergenic
TCTGTTATGCTTGTTTCACT+GGG 0.514410 3:-103566413 MsG0380018035.01.T01:CDS
TGTGGCGTTGTTGGTATCTA+CGG 0.518381 3:-103567710 MsG0380018035.01.T01:CDS
CAAGTTCATTTCTCAAGGAA+CGG 0.518679 3:+103567387 None:intergenic
CATGTCCGTTATTCAACTGC+AGG 0.521534 3:-103567500 MsG0380018035.01.T01:CDS
TTACCTGGAACCTTAGCCAT+TGG 0.522608 3:-103567524 MsG0380018035.01.T01:CDS
TATGAAAGAGAGGTTTATCC+TGG 0.522853 3:-103567095 MsG0380018035.01.T01:CDS
TTAGCGGCGATGTTTGTGAA+TGG 0.523421 3:+103567764 None:intergenic
ACCAAAGGTCGAAAACCAAA+AGG 0.526636 3:+103567191 None:intergenic
CAACGCCGGTAATGGTTTGA+AGG 0.528133 3:+103567588 None:intergenic
CTTCAAACCATTACCGGCGT+TGG 0.528503 3:-103567587 MsG0380018035.01.T01:CDS
GGCGGTTGAATGGTTGAAAG+AGG 0.533941 3:+103567907 None:intergenic
CTAAGGTTCCAGGTAATTGA+CGG 0.544084 3:+103567531 None:intergenic
TGGGTCTTGTTATTATGGTG+TGG 0.544696 3:-103566571 MsG0380018035.01.T01:CDS
TCTTGAAGGGAAAAGGGTTG+TGG 0.550569 3:-103566703 MsG0380018035.01.T01:CDS
GTGAGGTTGTTAAAAGAAGC+TGG 0.552217 3:-103566636 MsG0380018035.01.T01:CDS
CTTCTTCTTCCCATAACCAA+AGG 0.554261 3:+103567176 None:intergenic
CAACACCAACGGAACCAAAA+CGG 0.557562 3:+103567435 None:intergenic
ATTGGCCTGCAGTTGAATAA+CGG 0.563701 3:+103567495 None:intergenic
AAATCTCTAATCTTCTGTGA+TGG 0.569057 3:+103566762 None:intergenic
TAACAAGACCCAATAATTGG+TGG 0.569913 3:+103566582 None:intergenic
TGTGAAGTTGAAGCTTTCAC+CGG 0.573769 3:-103566736 MsG0380018035.01.T01:CDS
CGAAGCTACTTATGAAAGAG+AGG 0.573913 3:-103567105 MsG0380018035.01.T01:CDS
TCCACAACCATAATTTCACC+AGG 0.575009 3:+103567077 None:intergenic
ATTGGTGGTGATTCTGTGGA+CGG 0.576969 3:-103566348 MsG0380018035.01.T01:CDS
CACCGTGGTCAAGAAGGTGC+TGG 0.578090 3:-103567638 MsG0380018035.01.T01:CDS
CGTTGAAAACTTCGGAAACG+AGG 0.581432 3:+103567564 None:intergenic
CTTCAACACCGTGGTCAAGA+AGG 0.588529 3:-103567644 MsG0380018035.01.T01:CDS
GTTATGGGAAGAAGAAGTAA+CGG 0.598346 3:-103567170 MsG0380018035.01.T01:CDS
TTGATTAGGTCACACTATGT+TGG 0.599304 3:-103566801 MsG0380018035.01.T01:CDS
GTTGATGATTCAATTGTGAG+AGG 0.610184 3:-103566678 MsG0380018035.01.T01:CDS
TTCGGAAACGAGGCCAACGC+CGG 0.614737 3:+103567574 None:intergenic
GAAAAGCCTCGTGAAGAATG+TGG 0.614821 3:-103567728 MsG0380018035.01.T01:CDS
ATTATGGTTGTGGATAAAAG+TGG 0.619860 3:-103567068 MsG0380018035.01.T01:CDS
ACGGACATGACCAATGGCTA+AGG 0.621207 3:+103567514 None:intergenic
GAGGATTGGTGGTGATTCTG+TGG 0.622494 3:-103566352 MsG0380018035.01.T01:CDS
ACCATTATGAGCAACACCAA+CGG 0.634502 3:+103567424 None:intergenic
GTTGAAGTGCATGGAGAGCG+AGG 0.641710 3:+103567660 None:intergenic
CAACATCATCTAAAATTGTG+AGG 0.642187 3:-103566653 MsG0380018035.01.T01:CDS
TGAATAACGGACATGACCAA+TGG 0.652687 3:+103567508 None:intergenic
GGACGGTGGATTGAATGGAT+CGG 0.653459 3:-103566331 MsG0380018035.01.T01:CDS
GGTGGTGATTCTGTGGACGG+TGG 0.655121 3:-103566345 MsG0380018035.01.T01:CDS
AACTTCTTCAAACTATCCAT+AGG 0.662605 3:+103566459 None:intergenic
AGCGAGGTAGCAGAGACGAG+AGG 0.672004 3:+103567676 None:intergenic
TACCAGCACCTTCTTGACCA+CGG 0.675912 3:+103567636 None:intergenic
GTGCTAAAGAAGTTCACATG+AGG 0.680748 3:-103566614 MsG0380018035.01.T01:CDS
ACAACGCCACATTCTTCACG+AGG 0.684608 3:+103567722 None:intergenic
GACCACGGTGTTGAAGTGCA+TGG 0.689058 3:+103567651 None:intergenic
CTCCATGCACTTCAACACCG+TGG 0.731810 3:-103567653 MsG0380018035.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTCAAAAATACATTGTTT+TGG + Chr3:103567253-103567272 None:intergenic 20.0%
!!! TTTTTAACTTTAAGTTCAGT+AGG + Chr3:103567889-103567908 None:intergenic 20.0%
! CTGAACTTAAAGTTAAAAAG+AGG - Chr3:103567890-103567909 MsG0380018035.01.T01:CDS 25.0%
! CTTAAAGTTAAAAAGAGGAT+TGG - Chr3:103567895-103567914 MsG0380018035.01.T01:CDS 25.0%
! TAATAACAAGACCCAATAAT+TGG + Chr3:103567685-103567704 None:intergenic 25.0%
! TATGAATCAAGAAGATTGTT+TGG - Chr3:103567319-103567338 MsG0380018035.01.T01:CDS 25.0%
!! AAGATTGTTTGGTGAAATAT+TGG - Chr3:103567330-103567349 MsG0380018035.01.T01:CDS 25.0%
!!! AAAATACATTGTTTTGGTTC+TGG + Chr3:103567247-103567266 None:intergenic 25.0%
!!! ATTATTGGGTCTTGTTATTA+TGG - Chr3:103567685-103567704 MsG0380018035.01.T01:CDS 25.0%
AAAGTTAAAAAGAGGATTGG+TGG - Chr3:103567898-103567917 MsG0380018035.01.T01:CDS 30.0%
AAATCTCTAATCTTCTGTGA+TGG + Chr3:103567502-103567521 None:intergenic 30.0%
AACTTCTTCAAACTATCCAT+AGG + Chr3:103567805-103567824 None:intergenic 30.0%
AGAAATGAACTTGAAGAATC+TGG - Chr3:103566884-103566903 MsG0380018035.01.T01:CDS 30.0%
ATAACTACATCACAATCAAC+AGG + Chr3:103567367-103567386 None:intergenic 30.0%
ATCTTCATCTCTTTCTGATT+TGG + Chr3:103567967-103567986 None:intergenic 30.0%
ATTATGGTTGTGGATAAAAG+TGG - Chr3:103567193-103567212 MsG0380018035.01.T01:CDS 30.0%
CAGAAAGAGATGAAGATTAT+TGG - Chr3:103567970-103567989 MsG0380018035.01.T01:CDS 30.0%
GAAGAAGAAAAAGAGAGTTT+AGG + Chr3:103566335-103566354 None:intergenic 30.0%
GATAGTTTGAAGAAGTTGTT+GGG - Chr3:103567808-103567827 MsG0380018035.01.T01:CDS 30.0%
GCTGAGATTAAGGAATTTAT+TGG - Chr3:103567757-103567776 MsG0380018035.01.T01:CDS 30.0%
TCAACAATTCTCGCTATAAA+AGG + Chr3:103566977-103566996 None:intergenic 30.0%
TCTTCATCTCTTTCTGATTT+GGG + Chr3:103567966-103567985 None:intergenic 30.0%
TTCCCAAATACAACAGAATT+GGG + Chr3:103567292-103567311 None:intergenic 30.0%
TTTCCCAAATACAACAGAAT+TGG + Chr3:103567293-103567312 None:intergenic 30.0%
! CAACATCATCTAAAATTGTG+AGG - Chr3:103567608-103567627 MsG0380018035.01.T01:CDS 30.0%
! TCACAGAAGATTAGAGATTT+TGG - Chr3:103567502-103567521 MsG0380018035.01.T01:CDS 30.0%
! TTCTTCAAGTTCATTTCTCA+AGG + Chr3:103566882-103566901 None:intergenic 30.0%
!! TTTTGTGTCGTTGAAAACTT+CGG + Chr3:103566708-103566727 None:intergenic 30.0%
AAAGTCCTTCAAACCATTAC+CGG - Chr3:103566668-103566687 MsG0380018035.01.T01:CDS 35.0%
AATGAGTGTAGCTGAGATTA+AGG - Chr3:103567747-103567766 MsG0380018035.01.T01:CDS 35.0%
ATTGCATGTCCACCAATTAT+TGG - Chr3:103567670-103567689 MsG0380018035.01.T01:CDS 35.0%
CAAGTTCATTTCTCAAGGAA+CGG + Chr3:103566877-103566896 None:intergenic 35.0%
CTAATCAAACCCTGTTGAAA+AGG + Chr3:103567448-103567467 None:intergenic 35.0%
GAAGCGTGTGAAAAAGTTAA+AGG - Chr3:103566995-103567014 MsG0380018035.01.T01:CDS 35.0%
GGATAGTTTGAAGAAGTTGT+TGG - Chr3:103567807-103567826 MsG0380018035.01.T01:CDS 35.0%
GGTTTATCCTGGTGAAATTA+TGG - Chr3:103567177-103567196 MsG0380018035.01.T01:CDS 35.0%
GTTATGGGAAGAAGAAGTAA+CGG - Chr3:103567091-103567110 MsG0380018035.01.T01:CDS 35.0%
GTTGTAAGAATGAGAAAGTG+AGG + Chr3:103566432-103566451 None:intergenic 35.0%
GTTGTGGAAAAAACAAGTGT+TGG + Chr3:103566378-103566397 None:intergenic 35.0%
TAACAAGACCCAATAATTGG+TGG + Chr3:103567682-103567701 None:intergenic 35.0%
TATGAAAGAGAGGTTTATCC+TGG - Chr3:103567166-103567185 MsG0380018035.01.T01:CDS 35.0%
TCTGTTATGCTTGTTTCACT+GGG - Chr3:103567848-103567867 MsG0380018035.01.T01:CDS 35.0%
TGCCCAATTCTGTTGTATTT+GGG - Chr3:103567287-103567306 MsG0380018035.01.T01:CDS 35.0%
TGGTTTGAAGGACTTTGTTA+TGG + Chr3:103566664-103566683 None:intergenic 35.0%
TTAAGTTCAGTAGGTTCAAC+AGG + Chr3:103567880-103567899 None:intergenic 35.0%
TTCTGTTATGCTTGTTTCAC+TGG - Chr3:103567847-103567866 MsG0380018035.01.T01:CDS 35.0%
TTGATTAGGTCACACTATGT+TGG - Chr3:103567460-103567479 MsG0380018035.01.T01:CDS 35.0%
TTGCATGTCCACCAATTATT+GGG - Chr3:103567671-103567690 MsG0380018035.01.T01:CDS 35.0%
TTGCCCAATTCTGTTGTATT+TGG - Chr3:103567286-103567305 MsG0380018035.01.T01:CDS 35.0%
! AAGGACTTTGTTATGGTTGA+CGG + Chr3:103566657-103566676 None:intergenic 35.0%
! AATGAGAAAGTGAGGTTTTG+GGG + Chr3:103566424-103566443 None:intergenic 35.0%
! AGAATGAGAAAGTGAGGTTT+TGG + Chr3:103566426-103566445 None:intergenic 35.0%
! CTTTTCAACAGGGTTTGATT+AGG - Chr3:103567446-103567465 MsG0380018035.01.T01:CDS 35.0%
! GAATGAGAAAGTGAGGTTTT+GGG + Chr3:103566425-103566444 None:intergenic 35.0%
! TGAATGGGAATGTGTTGTTA+GGG + Chr3:103566484-103566503 None:intergenic 35.0%
! TGTGTTGTTAGGGTTGTTAT+TGG + Chr3:103566474-103566493 None:intergenic 35.0%
!! AAGAGAGTTTAGGTTTGTTG+AGG + Chr3:103566325-103566344 None:intergenic 35.0%
!! AGAGAGTTTAGGTTTGTTGA+GGG + Chr3:103566324-103566343 None:intergenic 35.0%
!! GTTGATGATTCAATTGTGAG+AGG - Chr3:103567583-103567602 MsG0380018035.01.T01:CDS 35.0%
!! TTCACTTGCTTTTCTACCTA+TGG - Chr3:103567786-103567805 MsG0380018035.01.T01:CDS 35.0%
!!! TTGAGAGAAGAGTTTTGTTG+TGG + Chr3:103566394-103566413 None:intergenic 35.0%
AAACGGTAACCTGCAACAAA+AGG + Chr3:103566812-103566831 None:intergenic 40.0%
ACAAAACTCCGTCAATTACC+TGG - Chr3:103566722-103566741 MsG0380018035.01.T01:CDS 40.0%
ACCAAAGGTCGAAAACCAAA+AGG + Chr3:103567073-103567092 None:intergenic 40.0%
ACCATTATGAGCAACACCAA+CGG + Chr3:103566840-103566859 None:intergenic 40.0%
CGAAGCTACTTATGAAAGAG+AGG - Chr3:103567156-103567175 MsG0380018035.01.T01:CDS 40.0%
CTAAGGTTCCAGGTAATTGA+CGG + Chr3:103566733-103566752 None:intergenic 40.0%
CTTCTTCTTCCCATAACCAA+AGG + Chr3:103567088-103567107 None:intergenic 40.0%
GATATCAACTCTTCAGAGCT+AGG + Chr3:103567721-103567740 None:intergenic 40.0%
GTGAGGTTGTTAAAAGAAGC+TGG - Chr3:103567625-103567644 MsG0380018035.01.T01:CDS 40.0%
GTGCTAAAGAAGTTCACATG+AGG - Chr3:103567647-103567666 MsG0380018035.01.T01:CDS 40.0%
GTTATAGCTGTTCCTGATTC+TGG - Chr3:103567382-103567401 MsG0380018035.01.T01:CDS 40.0%
TCCACAACCATAATTTCACC+AGG + Chr3:103567187-103567206 None:intergenic 40.0%
TCCTGGTGAAATTATGGTTG+TGG - Chr3:103567183-103567202 MsG0380018035.01.T01:CDS 40.0%
TGCTGTTCTTGAAGGGAAAA+GGG - Chr3:103567552-103567571 MsG0380018035.01.T01:CDS 40.0%
TGTGAAGTTGAAGCTTTCAC+CGG - Chr3:103567525-103567544 MsG0380018035.01.T01:CDS 40.0%
! AACGTTCAACCTTTTGTTGC+AGG - Chr3:103566800-103566819 MsG0380018035.01.T01:CDS 40.0%
! ATTGGCCTGCAGTTGAATAA+CGG + Chr3:103566769-103566788 None:intergenic 40.0%
! GGTTTTCGACCTTTGGTTAT+GGG - Chr3:103567076-103567095 MsG0380018035.01.T01:CDS 40.0%
! GTGAATGGGAATGTGTTGTT+AGG + Chr3:103566485-103566504 None:intergenic 40.0%
! TGGTTTTCGACCTTTGGTTA+TGG - Chr3:103567075-103567094 MsG0380018035.01.T01:CDS 40.0%
! TTTGTTGCAGGTTACCGTTT+TGG - Chr3:103566812-103566831 MsG0380018035.01.T01:CDS 40.0%
!! AGGTTGAACGTTTTTGAGCA+TGG + Chr3:103566792-103566811 None:intergenic 40.0%
!! GAACGTTTTTGAGCATGGAT+TGG + Chr3:103566787-103566806 None:intergenic 40.0%
!! GTGGAAAAAACAAGTGTTGG+CGG + Chr3:103566375-103566394 None:intergenic 40.0%
!! TGAATAACGGACATGACCAA+TGG + Chr3:103566756-103566775 None:intergenic 40.0%
!! TGGGTCTTGTTATTATGGTG+TGG - Chr3:103567690-103567709 MsG0380018035.01.T01:CDS 40.0%
!! TTTAGGTTTGTTGAGGGAAG+AGG + Chr3:103566318-103566337 None:intergenic 40.0%
!!! CGGTTCTGTTGTTTTTGCTT+CGG - Chr3:103567111-103567130 MsG0380018035.01.T01:CDS 40.0%
!!! TCCTTTTGGTTTTCGACCTT+TGG - Chr3:103567069-103567088 MsG0380018035.01.T01:CDS 40.0%
CAACACCAACGGAACCAAAA+CGG + Chr3:103566829-103566848 None:intergenic 45.0%
CATGTCCGTTATTCAACTGC+AGG - Chr3:103566761-103566780 MsG0380018035.01.T01:CDS 45.0%
CGTTGAAAACTTCGGAAACG+AGG + Chr3:103566700-103566719 None:intergenic 45.0%
CTTGGTTATGCTGCAAAAGC+TGG - Chr3:103567418-103567437 MsG0380018035.01.T01:CDS 45.0%
GAAAAGCCTCGTGAAGAATG+TGG - Chr3:103566533-103566552 MsG0380018035.01.T01:CDS 45.0%
TAGCGGCGATGTTTGTGAAT+GGG + Chr3:103566499-103566518 None:intergenic 45.0%
TCTTGAAGGGAAAAGGGTTG+TGG - Chr3:103567558-103567577 MsG0380018035.01.T01:CDS 45.0%
TGTGGCGTTGTTGGTATCTA+CGG - Chr3:103566551-103566570 MsG0380018035.01.T01:CDS 45.0%
TTACCTGGAACCTTAGCCAT+TGG - Chr3:103566737-103566756 MsG0380018035.01.T01:CDS 45.0%
TTAGCGGCGATGTTTGTGAA+TGG + Chr3:103566500-103566519 None:intergenic 45.0%
TTCGTCGTCGTCATCATTAG+CGG + Chr3:103566516-103566535 None:intergenic 45.0%
! AGCTGGTGTTCCTTTTCAAC+AGG - Chr3:103567435-103567454 MsG0380018035.01.T01:CDS 45.0%
! GCTGGTGTTCCTTTTCAACA+GGG - Chr3:103567436-103567455 MsG0380018035.01.T01:CDS 45.0%
! GTGCTGTTCTTGAAGGGAAA+AGG - Chr3:103567551-103567570 MsG0380018035.01.T01:CDS 45.0%
! GTTGCTGTCAGAGATCCTTT+TGG - Chr3:103567055-103567074 MsG0380018035.01.T01:CDS 45.0%
!! AACAAGTGTTGGCGGTTGAA+TGG + Chr3:103566367-103566386 None:intergenic 45.0%
!! ATTGGTGGTGATTCTGTGGA+CGG - Chr3:103567913-103567932 MsG0380018035.01.T01:CDS 45.0%
!! TCCGTTGGTGTTGCTCATAA+TGG - Chr3:103566836-103566855 MsG0380018035.01.T01:CDS 45.0%
ACAACGCCACATTCTTCACG+AGG + Chr3:103566542-103566561 None:intergenic 50.0%
ACGGACATGACCAATGGCTA+AGG + Chr3:103566750-103566769 None:intergenic 50.0%
CCTTCAAGAACAGCACGAAC+CGG + Chr3:103567547-103567566 None:intergenic 50.0%
CGTGAAGAATGTGGCGTTGT+TGG - Chr3:103566542-103566561 MsG0380018035.01.T01:CDS 50.0%
CTTCAAACCATTACCGGCGT+TGG - Chr3:103566674-103566693 MsG0380018035.01.T01:CDS 50.0%
CTTCAACACCGTGGTCAAGA+AGG - Chr3:103566617-103566636 MsG0380018035.01.T01:CDS 50.0%
GCAGCAACAACACCAGAATC+AGG + Chr3:103567397-103567416 None:intergenic 50.0%
GGCGGTTGAATGGTTGAAAG+AGG + Chr3:103566357-103566376 None:intergenic 50.0%
GTTGAGGGAAGAGGAAGAGA+GGG + Chr3:103566309-103566328 None:intergenic 50.0%
TACCAGCACCTTCTTGACCA+CGG + Chr3:103566628-103566647 None:intergenic 50.0%
TGACCAATGGCTAAGGTTCC+AGG + Chr3:103566743-103566762 None:intergenic 50.0%
TGTTGAGGGAAGAGGAAGAG+AGG + Chr3:103566310-103566329 None:intergenic 50.0%
! CAACGCCGGTAATGGTTTGA+AGG + Chr3:103566676-103566695 None:intergenic 50.0%
! CGGTTCGTGCTGTTCTTGAA+GGG - Chr3:103567545-103567564 MsG0380018035.01.T01:CDS 50.0%
!! GAGGATTGGTGGTGATTCTG+TGG - Chr3:103567909-103567928 MsG0380018035.01.T01:CDS 50.0%
!! GGACGGTGGATTGAATGGAT+CGG - Chr3:103567930-103567949 MsG0380018035.01.T01:CDS 50.0%
!! TCTGGTGTTGTTGCTGCACT+TGG - Chr3:103567400-103567419 MsG0380018035.01.T01:CDS 50.0%
!! TCTGTGGACGGTGGATTGAA+TGG - Chr3:103567925-103567944 MsG0380018035.01.T01:CDS 50.0%
!!! GGTTACCGTTTTGGTTCCGT+TGG - Chr3:103566821-103566840 MsG0380018035.01.T01:CDS 50.0%
CTCCATGCACTTCAACACCG+TGG - Chr3:103566608-103566627 MsG0380018035.01.T01:CDS 55.0%
GTTGAAGTGCATGGAGAGCG+AGG + Chr3:103566604-103566623 None:intergenic 55.0%
TAGCAGAGACGAGAGGCTTC+TGG + Chr3:103566581-103566600 None:intergenic 55.0%
! CCGGTTCGTGCTGTTCTTGA+AGG - Chr3:103567544-103567563 MsG0380018035.01.T01:CDS 55.0%
! GACCACGGTGTTGAAGTGCA+TGG + Chr3:103566613-103566632 None:intergenic 55.0%
AACGAGGCCAACGCCGGTAA+TGG + Chr3:103566684-103566703 None:intergenic 60.0%
AGCGAGGTAGCAGAGACGAG+AGG + Chr3:103566588-103566607 None:intergenic 60.0%
GGTGGTGATTCTGTGGACGG+TGG - Chr3:103567916-103567935 MsG0380018035.01.T01:CDS 60.0%
TTCGGAAACGAGGCCAACGC+CGG + Chr3:103566690-103566709 None:intergenic 60.0%
! CACCGTGGTCAAGAAGGTGC+TGG - Chr3:103566623-103566642 MsG0380018035.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 103566284 103567999 103566284 ID=MsG0380018035.01;Name=MsG0380018035.01
Chr3 mRNA 103566284 103567999 103566284 ID=MsG0380018035.01.T01;Parent=MsG0380018035.01;Name=MsG0380018035.01.T01;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|571
Chr3 exon 103566284 103567999 103566284 ID=MsG0380018035.01.T01:exon:27603;Parent=MsG0380018035.01.T01
Chr3 CDS 103566284 103567999 103566284 ID=MsG0380018035.01.T01:cds;Parent=MsG0380018035.01.T01
Gene Sequence

>MsG0380018035.01.T01

ATGGCAGCATCAAATCTCTCTACCCTCTCTTCCTCTTCCCTCAACAAACCTAAACTCTCTTTTTCTTCTTCCTCTTTCAACCATTCAACCGCCAACACTTGTTTTTTCCACAACAAAACTCTTCTCTCAAACTCAAACCCCAAAACCTCACTTTCTCATTCTTACAACTACAAAACACTTTCATGCACCAATAACAACCCTAACAACACATTCCCATTCACAAACATCGCCGCTAATGATGACGACGACGAAAAGCCTCGTGAAGAATGTGGCGTTGTTGGTATCTACGGCGATCCAGAAGCCTCTCGTCTCTGCTACCTCGCTCTCCATGCACTTCAACACCGTGGTCAAGAAGGTGCTGGTATCGTTACCGTCAACCATAACAAAGTCCTTCAAACCATTACCGGCGTTGGCCTCGTTTCCGAAGTTTTCAACGACACAAAACTCCGTCAATTACCTGGAACCTTAGCCATTGGTCATGTCCGTTATTCAACTGCAGGCCAATCCATGCTCAAAAACGTTCAACCTTTTGTTGCAGGTTACCGTTTTGGTTCCGTTGGTGTTGCTCATAATGGTAACTTTGTCAATTACCGTTCCTTGAGAAATGAACTTGAAGAATCTGGTTCAATTTTCAACACTACTTCTGATACTGAAGTTTTGCTTCATCTTATTGCAACATCAAATCATAGACCTTTTATAGCGAGAATTGTTGAAGCGTGTGAAAAAGTTAAAGGTGCTTATTCAATTGTGTTTGTTACTGAAGATAAACTTGTTGCTGTCAGAGATCCTTTTGGTTTTCGACCTTTGGTTATGGGAAGAAGAAGTAACGGTTCTGTTGTTTTTGCTTCGGAAACATGTGCACTTGATTTGATCGAAGCTACTTATGAAAGAGAGGTTTATCCTGGTGAAATTATGGTTGTGGATAAAAGTGGTGTTCAATCTCATTGTCTTGTTTCTCATCCAGAACCAAAACAATGTATTTTTGAACATATTTATTTTTCATTGCCCAATTCTGTTGTATTTGGGAAATCTGTTTATGAATCAAGAAGATTGTTTGGTGAAATATTGGCTACTGAGAGTCCTGTTGATTGTGATGTAGTTATAGCTGTTCCTGATTCTGGTGTTGTTGCTGCACTTGGTTATGCTGCAAAAGCTGGTGTTCCTTTTCAACAGGGTTTGATTAGGTCACACTATGTTGGTAGAACTTTCATTGAGCCATCACAGAAGATTAGAGATTTTGGTGTGAAGTTGAAGCTTTCACCGGTTCGTGCTGTTCTTGAAGGGAAAAGGGTTGTGGTTGTTGATGATTCAATTGTGAGAGGAACAACATCATCTAAAATTGTGAGGTTGTTAAAAGAAGCTGGTGCTAAAGAAGTTCACATGAGGATTGCATGTCCACCAATTATTGGGTCTTGTTATTATGGTGTGGATACACCTAGCTCTGAAGAGTTGATATCTAATAGAATGAGTGTAGCTGAGATTAAGGAATTTATTGGTTGTGATTCACTTGCTTTTCTACCTATGGATAGTTTGAAGAAGTTGTTGGGTGATGATTCTTCTAATTTCTGTTATGCTTGTTTCACTGGGAATTATCCTGTTGAACCTACTGAACTTAAAGTTAAAAAGAGGATTGGTGGTGATTCTGTGGACGGTGGATTGAATGGATCGGTTCAAGCTAGCCCAAATCAGAAAGAGATGAAGATTATTGGAGTCTGA

Protein sequence

>MsG0380018035.01.T01

MAASNLSTLSSSSLNKPKLSFSSSSFNHSTANTCFFHNKTLLSNSNPKTSLSHSYNYKTLSCTNNNPNNTFPFTNIAANDDDDEKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVTVNHNKVLQTITGVGLVSEVFNDTKLRQLPGTLAIGHVRYSTAGQSMLKNVQPFVAGYRFGSVGVAHNGNFVNYRSLRNELEESGSIFNTTSDTEVLLHLIATSNHRPFIARIVEACEKVKGAYSIVFVTEDKLVAVRDPFGFRPLVMGRRSNGSVVFASETCALDLIEATYEREVYPGEIMVVDKSGVQSHCLVSHPEPKQCIFEHIYFSLPNSVVFGKSVYESRRLFGEILATESPVDCDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIACPPIIGSCYYGVDTPSSEELISNRMSVAEIKEFIGCDSLAFLPMDSLKKLLGDDSSNFCYACFTGNYPVEPTELKVKKRIGGDSVDGGLNGSVQASPNQKEMKIIGV*