Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022241.01.T01 | KEH30814.1 | 95.745 | 47 | 2 | 0 | 21 | 67 | 54 | 100 | 1.15E-22 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022241.01.T01 | A0A072UM07 | 95.745 | 47 | 2 | 0 | 21 | 67 | 54 | 100 | 5.48e-23 | 93.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048733.01 | MsG0480022241.01 | 0.800175 | 1.629941e-48 | 7.538764e-46 |
| MsG0080049023.01 | MsG0480022241.01 | 0.814661 | 1.375167e-51 | 9.282769e-49 |
| MsG0180000367.01 | MsG0480022241.01 | -0.834115 | 3.612701e-56 | 4.245875e-53 |
| MsG0180000466.01 | MsG0480022241.01 | -0.803599 | 3.228721e-49 | 1.629282e-46 |
| MsG0180000551.01 | MsG0480022241.01 | -0.804762 | 1.849182e-49 | 9.614782e-47 |
| MsG0180001290.01 | MsG0480022241.01 | -0.800073 | 1.710374e-48 | 7.890492e-46 |
| MsG0180001513.01 | MsG0480022241.01 | -0.832028 | 1.193890e-55 | 1.318443e-52 |
| MsG0180001615.01 | MsG0480022241.01 | 0.830364 | 3.061895e-55 | 3.219121e-52 |
| MsG0180003405.01 | MsG0480022241.01 | 0.835558 | 1.564736e-56 | 1.920214e-53 |
| MsG0180003484.01 | MsG0480022241.01 | -0.823847 | 1.111264e-53 | 9.679979e-51 |
| MsG0180003617.01 | MsG0480022241.01 | 0.813595 | 2.364227e-51 | 1.550586e-48 |
| MsG0180004124.01 | MsG0480022241.01 | 0.808404 | 3.148783e-50 | 1.798871e-47 |
| MsG0180004125.01 | MsG0480022241.01 | 0.812638 | 3.833126e-51 | 2.450095e-48 |
| MsG0180004714.01 | MsG0480022241.01 | 0.838450 | 2.854938e-57 | 3.825436e-54 |
| MsG0180004792.01 | MsG0480022241.01 | 0.825846 | 3.751242e-54 | 3.459518e-51 |
| MsG0180005096.01 | MsG0480022241.01 | -0.811770 | 5.929616e-51 | 3.702712e-48 |
| MsG0180005338.01 | MsG0480022241.01 | 0.807762 | 4.313774e-50 | 2.423016e-47 |
| MsG0180005369.01 | MsG0480022241.01 | 0.804279 | 2.331688e-49 | 1.197296e-46 |
| MsG0180005681.01 | MsG0480022241.01 | -0.839086 | 1.955567e-57 | 2.671533e-54 |
| MsG0180005898.01 | MsG0480022241.01 | 0.822636 | 2.131016e-53 | 1.793876e-50 |
| MsG0180006063.01 | MsG0480022241.01 | 0.807106 | 5.944270e-50 | 3.282227e-47 |
| MsG0180006076.01 | MsG0480022241.01 | 0.816354 | 5.775299e-52 | 4.082977e-49 |
| MsG0180006183.01 | MsG0480022241.01 | -0.813417 | 2.586410e-51 | 1.688104e-48 |
| MsG0280010605.01 | MsG0480022241.01 | 0.805099 | 1.572216e-49 | 8.245611e-47 |
| MsG0280010854.01 | MsG0480022241.01 | 0.834767 | 2.477033e-56 | 2.968379e-53 |
| MsG0280010936.01 | MsG0480022241.01 | -0.804305 | 2.302401e-49 | 1.183070e-46 |
| MsG0280011036.01 | MsG0480022241.01 | 0.828234 | 1.007098e-54 | 9.950427e-52 |
| MsG0280011269.01 | MsG0480022241.01 | -0.816613 | 5.052821e-52 | 3.597454e-49 |
| MsG0280011281.01 | MsG0480022241.01 | 0.807744 | 4.353037e-50 | 2.443999e-47 |
| MsG0380011968.01 | MsG0480022241.01 | -0.846202 | 2.519173e-59 | 4.302720e-56 |
| MsG0380012889.01 | MsG0480022241.01 | -0.814134 | 1.798037e-51 | 1.196574e-48 |
| MsG0380012895.01 | MsG0480022241.01 | -0.813936 | 1.988297e-51 | 1.316050e-48 |
| MsG0380014344.01 | MsG0480022241.01 | -0.806221 | 9.138835e-50 | 4.933160e-47 |
| MsG0380014639.01 | MsG0480022241.01 | 0.825100 | 5.634621e-54 | 5.086863e-51 |
| MsG0380014642.01 | MsG0480022241.01 | 0.820326 | 7.276487e-53 | 5.739402e-50 |
| MsG0380014646.01 | MsG0480022241.01 | 0.811338 | 7.359419e-51 | 4.543274e-48 |
| MsG0380014735.01 | MsG0480022241.01 | 0.848135 | 7.433053e-60 | 1.350619e-56 |
| MsG0480018486.01 | MsG0480022241.01 | -0.812746 | 3.630445e-51 | 2.327129e-48 |
| MsG0480021151.01 | MsG0480022241.01 | 0.826819 | 2.201064e-54 | 2.086785e-51 |
| MsG0480021226.01 | MsG0480022241.01 | -0.823570 | 1.289916e-53 | 1.114789e-50 |
| MsG0480021360.01 | MsG0480022241.01 | -0.835541 | 1.580709e-56 | 1.938804e-53 |
| MsG0480021433.01 | MsG0480022241.01 | -0.848336 | 6.541072e-60 | 1.196393e-56 |
| MsG0480021604.01 | MsG0480022241.01 | -0.800908 | 1.155913e-48 | 5.447068e-46 |
| MsG0480021967.01 | MsG0480022241.01 | 0.814558 | 1.449500e-51 | 9.757725e-49 |
| MsG0480022241.01 | MsG0480022242.01 | 0.911681 | 4.615181e-83 | 1.000359e-78 |
| MsG0480022241.01 | MsG0480022244.01 | 0.896542 | 3.338704e-76 | 3.629033e-72 |
| MsG0480022241.01 | MsG0480022310.01 | -0.811579 | 6.524340e-51 | 4.053575e-48 |
| MsG0480022241.01 | MsG0480022428.01 | -0.816544 | 5.235167e-52 | 3.720215e-49 |
| MsG0480022241.01 | MsG0480022833.01 | -0.835836 | 1.330243e-56 | 1.646227e-53 |
| MsG0480022241.01 | MsG0480023067.01 | -0.828442 | 8.969937e-55 | 8.917227e-52 |
| MsG0480022241.01 | MsG0480023322.01 | -0.805071 | 1.593344e-49 | 8.350725e-47 |
| MsG0480022241.01 | MsG0480023327.01 | -0.818217 | 2.199310e-52 | 1.636216e-49 |
| MsG0480022241.01 | MsG0480023375.01 | 0.835891 | 1.288692e-56 | 1.597399e-53 |
| MsG0480022241.01 | MsG0480023386.01 | 0.808800 | 2.591457e-50 | 1.495777e-47 |
| MsG0480022241.01 | MsG0480023466.01 | 0.821301 | 4.342838e-53 | 3.519688e-50 |
| MsG0480022241.01 | MsG0480023851.01 | 0.853205 | 2.786873e-61 | 5.974955e-58 |
| MsG0480022241.01 | MsG0480023987.01 | -0.829828 | 4.138597e-55 | 4.284929e-52 |
| MsG0480022241.01 | MsG0580024087.01 | -0.805865 | 1.086112e-49 | 5.809657e-47 |
| MsG0480022241.01 | MsG0580024688.01 | 0.808883 | 2.488285e-50 | 1.439374e-47 |
| MsG0480022241.01 | MsG0580025486.01 | 0.824807 | 6.607376e-54 | 5.915679e-51 |
| MsG0480022241.01 | MsG0580027854.01 | -0.803748 | 3.006113e-49 | 1.522727e-46 |
| MsG0480022241.01 | MsG0580028041.01 | -0.817238 | 3.657886e-52 | 2.649275e-49 |
| MsG0480022241.01 | MsG0580028302.01 | -0.840324 | 9.314302e-58 | 1.321970e-54 |
| MsG0480022241.01 | MsG0580028490.01 | -0.800896 | 1.162106e-48 | 5.474680e-46 |
| MsG0480022241.01 | MsG0580029296.01 | -0.835641 | 1.491304e-56 | 1.834650e-53 |
| MsG0480022241.01 | MsG0580029696.01 | -0.800423 | 1.451324e-48 | 6.755486e-46 |
| MsG0480022241.01 | MsG0580029706.01 | 0.809313 | 2.012976e-50 | 1.177930e-47 |
| MsG0480022241.01 | MsG0580029751.01 | 0.807059 | 6.081583e-50 | 3.354108e-47 |
| MsG0480022241.01 | MsG0680030296.01 | -0.824424 | 8.132642e-54 | 7.200234e-51 |
| MsG0480022241.01 | MsG0680035584.01 | 0.827240 | 1.744647e-54 | 1.674702e-51 |
| MsG0480022241.01 | MsG0780036208.01 | -0.808230 | 3.430861e-50 | 1.951004e-47 |
| MsG0480022241.01 | MsG0780036839.01 | -0.801218 | 9.988220e-49 | 4.743612e-46 |
| MsG0480022241.01 | MsG0780038919.01 | -0.802403 | 5.704923e-49 | 2.792162e-46 |
| MsG0480022241.01 | MsG0780039237.01 | -0.841317 | 5.113631e-58 | 7.484793e-55 |
| MsG0480022241.01 | MsG0780039287.01 | 0.826820 | 2.199839e-54 | 2.085676e-51 |
| MsG0480022241.01 | MsG0780040005.01 | -0.829992 | 3.773409e-55 | 3.924791e-52 |
| MsG0480022241.01 | MsG0780040497.01 | -0.815797 | 7.689178e-52 | 5.354061e-49 |
| MsG0480022241.01 | MsG0780040560.01 | -0.830376 | 3.040874e-55 | 3.198123e-52 |
| MsG0480022241.01 | MsG0780040716.01 | -0.806827 | 6.808173e-50 | 3.732404e-47 |
| MsG0480022241.01 | MsG0780041036.01 | -0.807375 | 5.212620e-50 | 2.898582e-47 |
| MsG0480022241.01 | MsG0780041180.01 | -0.808247 | 3.401827e-50 | 1.935442e-47 |
| MsG0480022241.01 | MsG0780041436.01 | -0.807240 | 5.567100e-50 | 3.084936e-47 |
| MsG0480022241.01 | MsG0880042122.01 | -0.810897 | 9.171589e-51 | 5.596951e-48 |
| MsG0480022241.01 | MsG0880042591.01 | -0.804199 | 2.422948e-49 | 1.241594e-46 |
| MsG0480022241.01 | MsG0880043056.01 | 0.834831 | 2.387727e-56 | 2.867120e-53 |
| MsG0480022241.01 | MsG0880043217.01 | -0.803370 | 3.600973e-49 | 1.806347e-46 |
| MsG0480022241.01 | MsG0880043495.01 | -0.843452 | 1.388847e-58 | 2.174039e-55 |
| MsG0480022241.01 | MsG0880043669.01 | -0.816966 | 4.210837e-52 | 3.027429e-49 |
| MsG0480022241.01 | MsG0880044317.01 | 0.828872 | 7.060244e-55 | 7.105927e-52 |
| MsG0480022241.01 | MsG0880045321.01 | 0.805368 | 1.380780e-49 | 7.291925e-47 |
| MsG0480022241.01 | MsG0880045369.01 | 0.803412 | 3.530266e-49 | 1.772839e-46 |
| MsG0480022241.01 | MsG0880045385.01 | 0.802551 | 5.318003e-49 | 2.612457e-46 |
| MsG0480022241.01 | MsG0880045703.01 | 0.812124 | 4.963575e-51 | 3.129300e-48 |
| MsG0480022241.01 | MsG0880045725.01 | -0.803061 | 4.172954e-49 | 2.076690e-46 |
| MsG0480022241.01 | MsG0880045761.01 | 0.811771 | 5.927096e-51 | 3.701264e-48 |
| MsG0480022241.01 | MsG0880045968.01 | 0.807200 | 5.678431e-50 | 3.143249e-47 |
| MsG0480022241.01 | MsG0880045991.01 | -0.811382 | 7.198951e-51 | 4.449561e-48 |
| MsG0480022241.01 | MsG0880046010.01 | 0.842027 | 3.321751e-58 | 4.971552e-55 |
| MsG0480022241.01 | MsG0880047057.01 | -0.802991 | 4.313537e-49 | 2.142871e-46 |
| MsG0480022241.01 | MsG0880047450.01 | -0.811656 | 6.278183e-51 | 3.908345e-48 |
| MsG0480022241.01 | MsG0880047664.01 | -0.817440 | 3.293704e-52 | 2.398860e-49 |
| MsG0480022241.01 | MsG0880047714.01 | -0.815529 | 8.821296e-52 | 6.097191e-49 |
| MsG0380015434.01 | MsG0480022241.01 | -0.807308 | 5.386137e-50 | 2.989973e-47 |
| MsG0380015660.01 | MsG0480022241.01 | -0.803445 | 3.474902e-49 | 1.746520e-46 |
| MsG0380015828.01 | MsG0480022241.01 | 0.839333 | 1.687259e-57 | 2.322636e-54 |
| MsG0380016065.01 | MsG0480022241.01 | 0.800338 | 1.510626e-48 | 7.016136e-46 |
| MsG0380016110.01 | MsG0480022241.01 | -0.802570 | 5.269496e-49 | 2.589860e-46 |
| MsG0380016380.01 | MsG0480022241.01 | 0.844580 | 6.922918e-59 | 1.122700e-55 |
| MsG0380016456.01 | MsG0480022241.01 | 0.804430 | 2.168267e-49 | 1.117700e-46 |
| MsG0380016492.01 | MsG0480022241.01 | 0.822264 | 2.599063e-53 | 2.164702e-50 |
| MsG0380016935.01 | MsG0480022241.01 | 0.815253 | 1.016330e-51 | 6.971228e-49 |
| MsG0380017030.01 | MsG0480022241.01 | -0.824593 | 7.420627e-54 | 6.603166e-51 |
| MsG0380017666.01 | MsG0480022241.01 | -0.803334 | 3.663146e-49 | 1.835858e-46 |
| MsG0380017812.01 | MsG0480022241.01 | 0.804461 | 2.136082e-49 | 1.102014e-46 |
| MsG0380017901.01 | MsG0480022241.01 | -0.816796 | 4.597524e-52 | 3.289695e-49 |
| MsG0380017967.01 | MsG0480022241.01 | -0.814846 | 1.251219e-51 | 8.488515e-49 |
| MsG0280006898.01 | MsG0480022241.01 | -0.842651 | 2.270378e-58 | 3.464965e-55 |
| MsG0280007054.01 | MsG0480022241.01 | -0.810380 | 1.186594e-50 | 7.141298e-48 |
| MsG0280007085.01 | MsG0480022241.01 | -0.817631 | 2.982848e-52 | 2.183746e-49 |
| MsG0280007199.01 | MsG0480022241.01 | -0.832510 | 9.072499e-56 | 1.016247e-52 |
| MsG0280007786.01 | MsG0480022241.01 | -0.812974 | 3.236750e-51 | 2.087203e-48 |
| MsG0280009526.01 | MsG0480022241.01 | -0.821685 | 3.540955e-53 | 2.900861e-50 |
| MsG0280009864.01 | MsG0480022241.01 | 0.819586 | 1.074702e-52 | 8.304599e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022241.01.T01 | MTR_4g082883 | 95.745 | 47 | 2 | 0 | 21 | 67 | 54 | 100 | 1.39e-26 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 16 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGGTTTGGCTGGCTCTTC+TGG | 0.238096 | 4:+70043536 | None:intergenic |
| TTTGGCTGGCTCTTCTGGTT+TGG | 0.325140 | 4:+70043541 | None:intergenic |
| CTGGCTCTTCTGGTTTGGAC+TGG | 0.372877 | 4:+70043546 | None:intergenic |
| ACCAATCACACCTTCGGGTT+TGG | 0.373855 | 4:+70043523 | None:intergenic |
| AGCACCACCAATCACACCTT+CGG | 0.387425 | 4:+70043517 | None:intergenic |
| GCTTCAGCACAAACAACTAT+AGG | 0.435825 | 4:-70043631 | MsG0480022241.01.T01:CDS |
| GCACCACCAATCACACCTTC+GGG | 0.442267 | 4:+70043518 | None:intergenic |
| ATCACACCTTCGGGTTTGGC+TGG | 0.446616 | 4:+70043527 | None:intergenic |
| GCCAAACCCGAAGGTGTGAT+TGG | 0.484923 | 4:-70043524 | MsG0480022241.01.T01:CDS |
| CTGGACAAAATCAGCAGCCT+TGG | 0.492880 | 4:+70043565 | None:intergenic |
| ACAAAATTACATCTTGTCTC+TGG | 0.509441 | 4:+70044749 | None:intergenic |
| CTTGGTAGCATACTCTCCTA+CGG | 0.606883 | 4:+70043583 | None:intergenic |
| GAAGAGCCAGCCAAACCCGA+AGG | 0.622241 | 4:-70043533 | MsG0480022241.01.T01:CDS |
| CGTAGGAGAGTATGCTACCA+AGG | 0.632082 | 4:-70043582 | MsG0480022241.01.T01:CDS |
| GCTAATGTTCAGAAGACCGT+AGG | 0.649202 | 4:-70043599 | MsG0480022241.01.T01:CDS |
| AAACCCGAAGGTGTGATTGG+TGG | 0.660272 | 4:-70043521 | MsG0480022241.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAGGAA+TGG | - | Chr4:70043958-70043977 | MsG0480022241.01.T01:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAGGAAT+GGG | - | Chr4:70043959-70043978 | MsG0480022241.01.T01:intron | 10.0% |
| !! | TTGTAATTAATAGAAAAATA+TGG | - | Chr4:70044377-70044396 | MsG0480022241.01.T01:intron | 10.0% |
| !!! | TTAATTTATTTTTTTTTCGA+AGG | + | Chr4:70043689-70043708 | None:intergenic | 10.0% |
| !!! | TTTTTCTAATATATTATTTG+AGG | + | Chr4:70044283-70044302 | None:intergenic | 10.0% |
| !!! | TTTTTCTTTTTTAAGAAAAA+TGG | + | Chr4:70043939-70043958 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAGGAATG+GGG | - | Chr4:70043960-70043979 | MsG0480022241.01.T01:intron | 15.0% |
| !! | ATGCATTAAAATACATAATA+AGG | + | Chr4:70044243-70044262 | None:intergenic | 15.0% |
| !!! | AAAATTACACATTTTCAAAT+AGG | - | Chr4:70044417-70044436 | MsG0480022241.01.T01:intron | 15.0% |
| !!! | TAATCCAAATATTGTTTTTT+AGG | + | Chr4:70043579-70043598 | None:intergenic | 15.0% |
| !! | CATACATAAATAATACAGTA+GGG | + | Chr4:70044099-70044118 | None:intergenic | 20.0% |
| !! | GATACCTAAAAAACAATATT+TGG | - | Chr4:70043572-70043591 | MsG0480022241.01.T01:CDS | 20.0% |
| !! | TCATACATAAATAATACAGT+AGG | + | Chr4:70044100-70044119 | None:intergenic | 20.0% |
| !!! | ATAGTATTTTATGTGGTTTT+AGG | - | Chr4:70043909-70043928 | MsG0480022241.01.T01:intron | 20.0% |
| !!! | GTTGAAGATTTTAATAATGT+GGG | + | Chr4:70044135-70044154 | None:intergenic | 20.0% |
| !!! | TAGTATTTTATGTGGTTTTA+GGG | - | Chr4:70043910-70043929 | MsG0480022241.01.T01:intron | 20.0% |
| ! | AAAATGAAATCATGAGTTCA+TGG | + | Chr4:70043870-70043889 | None:intergenic | 25.0% |
| ! | ATAAATAACTGTTCAAGTCT+TGG | - | Chr4:70044473-70044492 | MsG0480022241.01.T01:intron | 25.0% |
| ! | ATGAATCTATGAATGATGAT+AGG | + | Chr4:70044510-70044529 | None:intergenic | 25.0% |
| ! | ATTTATGTATGAGTGGATAT+GGG | - | Chr4:70044108-70044127 | MsG0480022241.01.T01:intron | 25.0% |
| ! | CTGTATTATTTATGTATGAG+TGG | - | Chr4:70044101-70044120 | MsG0480022241.01.T01:intron | 25.0% |
| ! | GAAAATATCTACTGAAATTG+TGG | + | Chr4:70044157-70044176 | None:intergenic | 25.0% |
| ! | TATTTATGTATGAGTGGATA+TGG | - | Chr4:70044107-70044126 | MsG0480022241.01.T01:intron | 25.0% |
| ! | TCAACTGTGTCAAATATTAT+GGG | + | Chr4:70044220-70044239 | None:intergenic | 25.0% |
| ! | TGAATCTATGAATGATGATA+GGG | + | Chr4:70044509-70044528 | None:intergenic | 25.0% |
| ! | TTCAAACAACAAAGAAACAA+TGG | - | Chr4:70044534-70044553 | MsG0480022241.01.T01:intron | 25.0% |
| !! | AGAACTCATAGTATTTTATG+TGG | - | Chr4:70043902-70043921 | MsG0480022241.01.T01:intron | 25.0% |
| !! | ATTTTCAAATAGGTCATCTA+TGG | - | Chr4:70044427-70044446 | MsG0480022241.01.T01:intron | 25.0% |
| !! | TTTCAGTAGATATTTTCTCT+TGG | - | Chr4:70044160-70044179 | MsG0480022241.01.T01:intron | 25.0% |
| !! | TTTTCAAATAGGTCATCTAT+GGG | - | Chr4:70044428-70044447 | MsG0480022241.01.T01:intron | 25.0% |
| !!! | AGTATTTTATGTGGTTTTAG+GGG | - | Chr4:70043911-70043930 | MsG0480022241.01.T01:intron | 25.0% |
| !!! | GGTTGAAGATTTTAATAATG+TGG | + | Chr4:70044136-70044155 | None:intergenic | 25.0% |
| ACAAAATTACATCTTGTCTC+TGG | + | Chr4:70043491-70043510 | None:intergenic | 30.0% | |
| ACCTGCAAAAAATCGTTATT+GGG | + | Chr4:70044571-70044590 | None:intergenic | 30.0% | |
| ATAATACAGTAGGGAATACT+TGG | + | Chr4:70044090-70044109 | None:intergenic | 30.0% | |
| CACTGTTTGTTTATTGATGT+CGG | + | Chr4:70044058-70044077 | None:intergenic | 30.0% | |
| GTCAACTGTGTCAAATATTA+TGG | + | Chr4:70044221-70044240 | None:intergenic | 30.0% | |
| TTTCAAATAGGTCATCTATG+GGG | - | Chr4:70044429-70044448 | MsG0480022241.01.T01:intron | 30.0% | |
| ! | GAGACAAGATGTAATTTTGT+CGG | - | Chr4:70043491-70043510 | MsG0480022241.01.T01:CDS | 30.0% |
| !!! | GTATTTTATGTGGTTTTAGG+GGG | - | Chr4:70043912-70043931 | MsG0480022241.01.T01:intron | 30.0% |
| !!! | GTTCATGGTCTATTTTTTTG+TGG | + | Chr4:70043855-70043874 | None:intergenic | 30.0% |
| AAAGAAACAATGGCATCAAC+TGG | - | Chr4:70044544-70044563 | MsG0480022241.01.T01:intron | 35.0% | |
| CACCTGCAAAAAATCGTTAT+TGG | + | Chr4:70044572-70044591 | None:intergenic | 35.0% | |
| CTGTGTCAAATATTATGGGA+CGG | + | Chr4:70044216-70044235 | None:intergenic | 35.0% | |
| GGAACCACGAAAAAGAAAAA+TGG | + | Chr4:70043987-70044006 | None:intergenic | 35.0% | |
| !!! | ACCCAATAACGATTTTTTGC+AGG | - | Chr4:70044567-70044586 | MsG0480022241.01.T01:intron | 35.0% |
| AAACACGTGAGACAATGTCA+CGG | + | Chr4:70044008-70044027 | None:intergenic | 40.0% | |
| GCTTCAGCACAAACAACTAT+AGG | - | Chr4:70044606-70044625 | MsG0480022241.01.T01:intron | 40.0% | |
| GTCAAATATTATGGGACGGA+AGG | + | Chr4:70044212-70044231 | None:intergenic | 40.0% | |
| TCGGTCGAAACAGAAAATTG+AGG | - | Chr4:70043510-70043529 | MsG0480022241.01.T01:CDS | 40.0% | |
| !! | GGGTCCATTTTTCTTTTTCG+TGG | - | Chr4:70043980-70043999 | MsG0480022241.01.T01:intron | 40.0% |
| !!! | ACGATTTTTTGCAGGTGCAA+AGG | - | Chr4:70044575-70044594 | MsG0480022241.01.T01:intron | 40.0% |
| CAAATAGGTCATCTATGGGG+AGG | - | Chr4:70044432-70044451 | MsG0480022241.01.T01:intron | 45.0% | |
| GCTAATGTTCAGAAGACCGT+AGG | - | Chr4:70044638-70044657 | MsG0480022241.01.T01:intron | 45.0% | |
| GGTGCTAAAAATGCTGTTGG+AGG | - | Chr4:70044737-70044756 | MsG0480022241.01.T01:intron | 45.0% | |
| TATTATGGGACGGAAGGAGA+AGG | + | Chr4:70044206-70044225 | None:intergenic | 45.0% | |
| ! | CTTGGTAGCATACTCTCCTA+CGG | + | Chr4:70044657-70044676 | None:intergenic | 45.0% |
| ! | GGTGGTGCTAAAAATGCTGT+TGG | - | Chr4:70044734-70044753 | MsG0480022241.01.T01:intron | 45.0% |
| !! | GTCTCACGTGTTTCTAGCAT+GGG | - | Chr4:70044015-70044034 | MsG0480022241.01.T01:intron | 45.0% |
| !! | TGTCTCACGTGTTTCTAGCA+TGG | - | Chr4:70044014-70044033 | MsG0480022241.01.T01:intron | 45.0% |
| !! | GAAAAAAAAAAAAAAAAAAA+AGG | - | Chr4:70043953-70043972 | MsG0480022241.01.T01:intron | 5.0% |
| AGCACCACCAATCACACCTT+CGG | + | Chr4:70044723-70044742 | None:intergenic | 50.0% | |
| CTAGCATGGGACAGGAACAA+GGG | - | Chr4:70044028-70044047 | MsG0480022241.01.T01:intron | 50.0% | |
| CTGGACAAAATCAGCAGCCT+TGG | + | Chr4:70044675-70044694 | None:intergenic | 50.0% | |
| TCTAGCATGGGACAGGAACA+AGG | - | Chr4:70044027-70044046 | MsG0480022241.01.T01:intron | 50.0% | |
| ! | AAACCCGAAGGTGTGATTGG+TGG | - | Chr4:70044716-70044735 | MsG0480022241.01.T01:intron | 50.0% |
| ! | ACCAATCACACCTTCGGGTT+TGG | + | Chr4:70044717-70044736 | None:intergenic | 50.0% |
| ! | CGTAGGAGAGTATGCTACCA+AGG | - | Chr4:70044655-70044674 | MsG0480022241.01.T01:intron | 50.0% |
| ! | TTTGGCTGGCTCTTCTGGTT+TGG | + | Chr4:70044699-70044718 | None:intergenic | 50.0% |
| !! | ACGTGTTTCTAGCATGGGAC+AGG | - | Chr4:70044020-70044039 | MsG0480022241.01.T01:intron | 50.0% |
| AGGTCATCTATGGGGAGGAG+AGG | - | Chr4:70044437-70044456 | MsG0480022241.01.T01:intron | 55.0% | |
| ATGGGACGGAAGGAGAAGGA+GGG | + | Chr4:70044202-70044221 | None:intergenic | 55.0% | |
| GCACCACCAATCACACCTTC+GGG | + | Chr4:70044722-70044741 | None:intergenic | 55.0% | |
| TATGGGACGGAAGGAGAAGG+AGG | + | Chr4:70044203-70044222 | None:intergenic | 55.0% | |
| ! | ATCACACCTTCGGGTTTGGC+TGG | + | Chr4:70044713-70044732 | None:intergenic | 55.0% |
| ! | GCCAAACCCGAAGGTGTGAT+TGG | - | Chr4:70044713-70044732 | MsG0480022241.01.T01:intron | 55.0% |
| !! | CTGGCTCTTCTGGTTTGGAC+TGG | + | Chr4:70044694-70044713 | None:intergenic | 55.0% |
| ACGGAAGGAGAAGGAGGGGA+GGG | + | Chr4:70044197-70044216 | None:intergenic | 60.0% | |
| GAAGAGCCAGCCAAACCCGA+AGG | - | Chr4:70044704-70044723 | MsG0480022241.01.T01:intron | 60.0% | |
| TGGGACGGAAGGAGAAGGAG+GGG | + | Chr4:70044201-70044220 | None:intergenic | 60.0% | |
| ! | TCGGGTTTGGCTGGCTCTTC+TGG | + | Chr4:70044704-70044723 | None:intergenic | 60.0% |
| GACGGAAGGAGAAGGAGGGG+AGG | + | Chr4:70044198-70044217 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 70043484 | 70044775 | 70043484 | ID=MsG0480022241.01;Name=MsG0480022241.01 |
| Chr4 | mRNA | 70043484 | 70044775 | 70043484 | ID=MsG0480022241.01.T01;Parent=MsG0480022241.01;Name=MsG0480022241.01.T01;_AED=0.50;_eAED=0.65;_QI=0|0|0|1|0|0|2|0|67 |
| Chr4 | exon | 70044759 | 70044775 | 70044759 | ID=MsG0480022241.01.T01:exon:11194;Parent=MsG0480022241.01.T01 |
| Chr4 | exon | 70043484 | 70043670 | 70043484 | ID=MsG0480022241.01.T01:exon:11193;Parent=MsG0480022241.01.T01 |
| Chr4 | CDS | 70044759 | 70044775 | 70044759 | ID=MsG0480022241.01.T01:cds;Parent=MsG0480022241.01.T01 |
| Chr4 | CDS | 70043484 | 70043670 | 70043484 | ID=MsG0480022241.01.T01:cds;Parent=MsG0480022241.01.T01 |
| Gene Sequence |
| Protein sequence |
