AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041002.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041002.01.T01 MTR_7g115570 99.200 250 2 0 2 251 316 565 0.0 527
MsG0780041002.01.T01 MTR_7g115570 99.200 250 2 0 2 251 148 397 0.0 523
MsG0780041002.01.T01 MTR_1g080320 83.133 249 40 2 3 251 338 584 1.15e-155 445
MsG0780041002.01.T01 MTR_7g115570 100.000 83 0 0 2 84 316 398 4.18e-55 182
MsG0780041002.01.T03 MTR_7g115570 85.222 203 15 2 6 208 71 258 1.25e-120 348
MsG0780041002.01.T03 MTR_7g115570 85.222 203 15 2 6 208 71 258 5.70e-119 349
MsG0780041002.01.T03 MTR_1g080320 59.817 219 62 3 3 208 74 279 5.98e-80 249
MsG0780041002.01.T03 MTR_7g115570 86.139 101 3 1 108 208 1 90 1.54e-55 182
MsG0780041002.01.T02 MTR_7g115570 99.200 250 2 0 2 251 316 565 0.0 527
MsG0780041002.01.T02 MTR_7g115570 99.200 250 2 0 2 251 148 397 0.0 523
MsG0780041002.01.T02 MTR_1g080320 83.133 249 40 2 3 251 338 584 1.15e-155 445
MsG0780041002.01.T02 MTR_7g115570 100.000 83 0 0 2 84 316 398 4.18e-55 182
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041002.01.T01 AT5G28910 71.200 250 66 4 2 251 165 408 2.12e-130 375
MsG0780041002.01.T01 AT5G28910 71.200 250 66 4 2 251 292 535 5.04e-129 376
MsG0780041002.01.T01 AT5G28960 71.600 250 66 4 2 251 292 536 7.43e-129 375
MsG0780041002.01.T03 AT5G28910 48.058 206 68 3 4 208 67 234 3.20e-55 184
MsG0780041002.01.T03 AT5G28960 48.603 179 53 3 31 208 94 234 5.55e-45 157
MsG0780041002.01.T03 AT5G28910 76.923 78 18 0 131 208 30 107 9.21e-38 135
MsG0780041002.01.T02 AT5G28910 71.200 250 66 4 2 251 165 408 2.12e-130 375
MsG0780041002.01.T02 AT5G28910 71.200 250 66 4 2 251 292 535 5.04e-129 376
MsG0780041002.01.T02 AT5G28960 71.600 250 66 4 2 251 292 536 7.43e-129 375

Find 57 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTATTTCTTTAGGTTTAA+AGG 0.141301 7:-85404007 None:intergenic
GTACCTTTGAGTTAGATTTA+AGG 0.229798 7:-85401860 None:intergenic
GTTAATCTTTCTATTTCTTT+AGG 0.231940 7:-85404015 None:intergenic
TGGGTATGTTTCTTAATTAT+TGG 0.246659 7:+85404333 MsG0780041002.01.T01:intron
AATAATTATATGAGACAAAA+AGG 0.297992 7:+85402169 MsG0780041002.01.T01:five_prime_UTR
CTGAGAGAAGTAAGTGCTTA+TGG 0.301437 7:+85404127 MsG0780041002.01.T01:five_prime_UTR
ATCTCTCCCAGTCAGCTAAA+AGG 0.322499 7:-85404856 None:intergenic
TGTCTTACACCAAGTGCTTA+TGG 0.325848 7:+85402286 MsG0780041002.01.T01:five_prime_UTR
CTTGCCTAATGCTCCACATT+TGG 0.333008 7:+85404173 MsG0780041002.01.T01:five_prime_UTR
GGCATTGGAGCTCAAATTGC+TGG 0.341476 7:+85404890 MsG0780041002.01.T01:five_prime_UTR
TGGGAGAGATTACCTGGATT+TGG 0.353736 7:+85404869 MsG0780041002.01.T01:five_prime_UTR
TTCGGGTCGCTACAGTTTGA+TGG 0.388599 7:-85404824 None:intergenic
TATCTTTGCTTTACTCAGCT+TGG 0.415647 7:+85404079 MsG0780041002.01.T01:five_prime_UTR
TTGTCACTAACTTCTACAAT+AGG 0.417294 7:+85404957 MsG0780041002.01.T01:five_prime_UTR
GAAAAGTTCAACGCGACATA+TGG 0.418048 7:+85404789 MsG0780041002.01.T01:five_prime_UTR
CTTGCTATTGCAATCAATGA+AGG 0.433637 7:+85404926 MsG0780041002.01.T01:five_prime_UTR
TTATTATTAGAATCTAACTT+TGG 0.452637 7:-85402148 None:intergenic
GCTAAAAGGAACTTGACATT+CGG 0.460601 7:-85404842 None:intergenic
AAGAGATTAATCAAGATGAA+AGG 0.465185 7:+85404055 MsG0780041002.01.T01:five_prime_UTR
AACCGTCTCGACACACGTAT+AGG 0.466328 7:+85404225 MsG0780041002.01.T01:five_prime_UTR
GCTGACTGGGAGAGATTACC+TGG 0.471329 7:+85404863 MsG0780041002.01.T01:five_prime_UTR
CTAAAAGGAACTTGACATTC+GGG 0.474877 7:-85404841 None:intergenic
AGATTACCTGGATTTGGCAT+TGG 0.484786 7:+85404875 MsG0780041002.01.T01:five_prime_UTR
AGAGATTAATCAAGATGAAA+GGG 0.498406 7:+85404056 MsG0780041002.01.T01:five_prime_UTR
CCACCAATGGAGAATAGAAA+AGG 0.502124 7:-85401797 None:intergenic
AGTAAGTGCTTATGGAAACT+TGG 0.512305 7:+85404135 MsG0780041002.01.T01:five_prime_UTR
AAGTGGGTGGCAACCACCAA+TGG 0.512333 7:-85401810 None:intergenic
CCTTTCCACCATGGACAAGT+AGG 0.522455 7:+85404256 MsG0780041002.01.T01:five_prime_UTR
TTCCTATACGTGTGTCGAGA+CGG 0.527916 7:-85404227 None:intergenic
GGCTGATCATGATGGCTGCA+AGG 0.535130 7:+85404978 MsG0780041002.01.T01:five_prime_UTR
CCTACTTGTCCATGGTGGAA+AGG 0.537449 7:-85404256 None:intergenic
ACTTAATAAACCGCCACCAT+AGG 0.547267 7:+85401766 None:intergenic
TGAGCTCCAATGCCAAATCC+AGG 0.562206 7:-85404881 None:intergenic
AGAAAAGGATCACCTGCCTA+TGG 0.563805 7:-85401782 None:intergenic
ATGTGGAGCATTAGGCAAGT+TGG 0.563992 7:-85404169 None:intergenic
AATCCTTTCCTACTTGTCCA+TGG 0.564954 7:-85404264 None:intergenic
CTACAATAGGCTGATCATGA+TGG 0.567105 7:+85404970 MsG0780041002.01.T01:five_prime_UTR
AATAAACCGCCACCATAGGC+AGG 0.567853 7:+85401770 None:intergenic
AATAATTAAGAAACATACCC+AGG 0.568161 7:-85404331 None:intergenic
TCACCTTAAATCTAACTCAA+AGG 0.576224 7:+85401857 MsG0780041002.01.T02:five_prime_UTR
GCTCAAATTGCTGGAATGTG+TGG 0.578209 7:+85404899 MsG0780041002.01.T01:five_prime_UTR
GCTGATCATGATGGCTGCAA+GGG 0.579408 7:+85404979 MsG0780041002.01.T01:five_prime_UTR
CTGAGGGTAATCATCCACCC+TGG 0.583025 7:+85404313 MsG0780041002.01.T01:five_prime_UTR
ATTAATTAACCATAAGCACT+TGG 0.598516 7:-85402295 None:intergenic
CCACCATGGACAAGTAGGAA+AGG 0.607649 7:+85404261 MsG0780041002.01.T01:five_prime_UTR
TACCCTCAGATACAGCAAGA+GGG 0.609496 7:-85404299 None:intergenic
TGAGGGTAATCATCCACCCT+GGG 0.609901 7:+85404314 MsG0780041002.01.T01:five_prime_UTR
GAAATGATTCCTTTCCACCA+TGG 0.616729 7:+85404247 MsG0780041002.01.T01:five_prime_UTR
CCTTTCCTACTTGTCCATGG+TGG 0.617827 7:-85404261 None:intergenic
AAAGGATCACCTGCCTATGG+TGG 0.626177 7:-85401779 None:intergenic
ACCCTCAGATACAGCAAGAG+GGG 0.639224 7:-85404298 None:intergenic
CCCTCAGATACAGCAAGAGG+GGG 0.652389 7:-85404297 None:intergenic
ATTAAGAAACATACCCAGGG+TGG 0.655647 7:-85404327 None:intergenic
ATAATTAAGAAACATACCCA+GGG 0.660266 7:-85404330 None:intergenic
TTACCCTCAGATACAGCAAG+AGG 0.671672 7:-85404300 None:intergenic
TCTTAGCAGAAACAGTGAGT+CGG 0.683066 7:-85402208 None:intergenic
TATTGTAGAAGTTAGTGACA+AGG 0.707557 7:-85404955 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTTTAAAAAAACAGT+AGG - Chr7:85403609-85403628 None:intergenic 10.0%
!!! AATTTGTTATTTAGTAATTT+TGG + Chr7:85404447-85404466 MsG0780041002.01.T01:intron 10.0%
!!! CAATAATTTTTTTTTTTTTG+AGG + Chr7:85403311-85403330 MsG0780041002.01.T01:intron 10.0%
!!! TTTTAATTCATTTTATTTAG+AGG + Chr7:85402342-85402361 MsG0780041002.01.T01:five_prime_UTR 10.0%
!! AAAAGAAGAAAATAATAAAG+GGG - Chr7:85403567-85403586 None:intergenic 15.0%
!! AAAAGAAGAAAATCATAAAT+GGG - Chr7:85403128-85403147 None:intergenic 15.0%
!! AATAATTATATGAGACAAAA+AGG + Chr7:85402169-85402188 MsG0780041002.01.T01:five_prime_UTR 15.0%
!! ACAAAAGAAGAAAATAATAA+AGG - Chr7:85403569-85403588 None:intergenic 15.0%
!! ATATATATTGACATGAATAT+AGG - Chr7:85402662-85402681 None:intergenic 15.0%
!! CAAAAGAAGAAAATAATAAA+GGG - Chr7:85403568-85403587 None:intergenic 15.0%
!! TAATCCAAAAAATTACTTAT+TGG + Chr7:85403219-85403238 MsG0780041002.01.T01:intron 15.0%
!! TTATTATTAGAATCTAACTT+TGG - Chr7:85402151-85402170 None:intergenic 15.0%
!!! AAATATGATGAATTTTTTAC+TGG - Chr7:85407168-85407187 None:intergenic 15.0%
!!! AGCATACTATAATTAATTTT+TGG + Chr7:85403755-85403774 MsG0780041002.01.T01:intron 15.0%
!!! ATTAATTTTAGAAAAACAGT+AGG - Chr7:85403203-85403222 None:intergenic 15.0%
!!! TCATTTTCTATAATCTAATA+AGG - Chr7:85404711-85404730 None:intergenic 15.0%
!!! TTTGGATTTTGTATTTAATA+AGG + Chr7:85404550-85404569 MsG0780041002.01.T01:intron 15.0%
!! AATATACATAGAATGAGAAA+AGG - Chr7:85402558-85402577 None:intergenic 20.0%
!! AATATCAAAGCATGTAAAAA+TGG - Chr7:85406382-85406401 None:intergenic 20.0%
!! AATTTATCAATATCAGACTT+TGG - Chr7:85406455-85406474 None:intergenic 20.0%
!! ATATATATGTGTATTGGATA+CGG + Chr7:85406121-85406140 MsG0780041002.01.T01:intron 20.0%
!! CAAAAGAAGAAAATCATAAA+TGG - Chr7:85403129-85403148 None:intergenic 20.0%
!! CATATTATTGGATTAATGTT+AGG - Chr7:85403177-85403196 None:intergenic 20.0%
!! CTAACTTAACTTTATAAAAC+CGG - Chr7:85402127-85402146 None:intergenic 20.0%
!! CTAGTTATTAAGAGAAAATT+GGG + Chr7:85403044-85403063 MsG0780041002.01.T01:intron 20.0%
!! CTGATATTGATAAATTTGTA+TGG + Chr7:85406459-85406478 MsG0780041002.01.T01:CDS 20.0%
!! GAAATAATGAATACTAAAAG+AGG - Chr7:85401898-85401917 None:intergenic 20.0%
!! TACAAGATAACATTACATTA+GGG + Chr7:85403803-85403822 MsG0780041002.01.T01:intron 20.0%
!! TATTATAAAAAGATGGAAAG+TGG - Chr7:85403906-85403925 None:intergenic 20.0%
!!! ACTACCAATAAGTAATTTTT+TGG - Chr7:85403226-85403245 None:intergenic 20.0%
!!! ATGGATTAATAAACAGAATA+AGG - Chr7:85405488-85405507 None:intergenic 20.0%
!!! GTTAATCTTTCTATTTCTTT+AGG - Chr7:85404018-85404037 None:intergenic 20.0%
!!! TTCTATTTCTTTAGGTTTAA+AGG - Chr7:85404010-85404029 None:intergenic 20.0%
! AAAACATTGGTAGAAAATGA+TGG - Chr7:85405556-85405575 None:intergenic 25.0%
! AACAGTAGGATTCATATTAT+TGG - Chr7:85403189-85403208 None:intergenic 25.0%
! AAGAGATTAATCAAGATGAA+AGG + Chr7:85404055-85404074 MsG0780041002.01.T01:five_prime_UTR 25.0%
! AATAATTAAGAAACATACCC+AGG - Chr7:85404334-85404353 None:intergenic 25.0%
! ACACGTGTATTATAAAAAGA+TGG - Chr7:85403913-85403932 None:intergenic 25.0%
! ACATTATCTATCACTCTATT+AGG + Chr7:85407032-85407051 MsG0780041002.01.T01:three_prime_UTR 25.0%
! AGAGATTAATCAAGATGAAA+GGG + Chr7:85404056-85404075 MsG0780041002.01.T01:five_prime_UTR 25.0%
! ATAATTAAGAAACATACCCA+GGG - Chr7:85404333-85404352 None:intergenic 25.0%
! ATACCAAATAGGAAAATTAG+TGG - Chr7:85405816-85405835 None:intergenic 25.0%
! ATTAATTAACCATAAGCACT+TGG - Chr7:85402298-85402317 None:intergenic 25.0%
! CATCATTAAATCACTATTCA+TGG - Chr7:85405633-85405652 None:intergenic 25.0%
! CATTACATAATAATGCACTT+AGG - Chr7:85404587-85404606 None:intergenic 25.0%
! CCTAGTTATTAAGAGAAAAT+TGG + Chr7:85403043-85403062 MsG0780041002.01.T01:intron 25.0%
! CTACAAGATAACATTACATT+AGG + Chr7:85403802-85403821 MsG0780041002.01.T01:intron 25.0%
! GAAAGAAAGAAAGAAATTCA+CGG - Chr7:85402458-85402477 None:intergenic 25.0%
! GAAATACAGTTGAAACTTTA+GGG + Chr7:85403641-85403660 MsG0780041002.01.T01:intron 25.0%
! GATATTTAATATGAGACACA+TGG + Chr7:85403421-85403440 MsG0780041002.01.T01:intron 25.0%
! GTAGTAAATGAAAGTGATTA+AGG - Chr7:85402992-85403011 None:intergenic 25.0%
! TAACACAAAGAAGAATAAGA+AGG - Chr7:85406695-85406714 None:intergenic 25.0%
! TAAGGAAAATAACTTACTGA+TGG - Chr7:85402974-85402993 None:intergenic 25.0%
! TAGGAAACTACTATCATATT+TGG + Chr7:85404532-85404551 MsG0780041002.01.T01:intron 25.0%
! TATACGTAACAAAAAGAAGT+GGG - Chr7:85401829-85401848 None:intergenic 25.0%
! TATTTCTCATTCCATCTATA+AGG - Chr7:85406950-85406969 None:intergenic 25.0%
! TGAAATACAGTTGAAACTTT+AGG + Chr7:85403640-85403659 MsG0780041002.01.T01:intron 25.0%
! TGGGTATGTTTCTTAATTAT+TGG + Chr7:85404333-85404352 MsG0780041002.01.T01:intron 25.0%
! TTAATCCATGATATCATTGA+TGG + Chr7:85405499-85405518 MsG0780041002.01.T01:intron 25.0%
! TTATACGTAACAAAAAGAAG+TGG - Chr7:85401830-85401849 None:intergenic 25.0%
! TTCATTATACAAAGGTAAGA+AGG + Chr7:85406784-85406803 MsG0780041002.01.T01:CDS 25.0%
! TTCTTCATATAGCAGTTAAA+AGG - Chr7:85403501-85403520 None:intergenic 25.0%
! TTGTGCTTTACATCTATAAA+TGG + Chr7:85405866-85405885 MsG0780041002.01.T01:intron 25.0%
!! CCAATTTTCTCTTAATAACT+AGG - Chr7:85403046-85403065 None:intergenic 25.0%
!! CTTGATGAGTATGAAATTTT+AGG + Chr7:85403684-85403703 MsG0780041002.01.T01:intron 25.0%
!! TGTTAATTTTCTTATGGCTA+CGG + Chr7:85406881-85406900 MsG0780041002.01.T01:CDS 25.0%
!! TTGCCATAATTATCATTTTC+AGG + Chr7:85405653-85405672 MsG0780041002.01.T01:intron 25.0%
!!! ACTGTGAAGTTTTGTTAAAA+TGG - Chr7:85405041-85405060 None:intergenic 25.0%
!!! CTGTATTGTTTCTTTGATTT+TGG + Chr7:85402867-85402886 MsG0780041002.01.T01:five_prime_UTR 25.0%
!!! TCCACTTGTTAATTTTCTTA+TGG + Chr7:85406875-85406894 MsG0780041002.01.T01:CDS 25.0%
!!! TCTAATGTCTTGTTTGTTTT+AGG + Chr7:85404513-85404532 MsG0780041002.01.T01:intron 25.0%
!!! TTGCATTTATTTTTTGCAGT+TGG + Chr7:85402589-85402608 MsG0780041002.01.T01:intron 25.0%
AAATGGAGCCATTAAATCAA+AGG + Chr7:85402748-85402767 MsG0780041002.01.T01:five_prime_UTR 30.0%
AACCAAATGTTATTGAGGTT+TGG - Chr7:85406617-85406636 None:intergenic 30.0%
ACAAACAAAGAACAAGAAGA+AGG - Chr7:85402397-85402416 None:intergenic 30.0%
ACCAAATGTTATTGAGGTTT+GGG - Chr7:85406616-85406635 None:intergenic 30.0%
ACCAGCATATATATGTGTAT+TGG + Chr7:85406115-85406134 MsG0780041002.01.T01:intron 30.0%
ACTATCTTAGAAGTTGTGTT+GGG - Chr7:85402039-85402058 None:intergenic 30.0%
AGAAGAATAGGTTTATGTTC+AGG - Chr7:85405331-85405350 None:intergenic 30.0%
AGATAGGAGTAATGTTTCAA+TGG + Chr7:85406809-85406828 MsG0780041002.01.T01:CDS 30.0%
ATAGATGGAATGAGAAATAC+TGG + Chr7:85406951-85406970 MsG0780041002.01.T01:CDS 30.0%
ATTAATGTTAGGAAGACAGT+AGG - Chr7:85403166-85403185 None:intergenic 30.0%
ATTATACGTCGAAGCATATA+TGG + Chr7:85405222-85405241 MsG0780041002.01.T01:intron 30.0%
ATTGTGTCAAAAATGCACTT+AGG - Chr7:85404634-85404653 None:intergenic 30.0%
ATTTGGTATAGAAGACTAAG+TGG + Chr7:85405827-85405846 MsG0780041002.01.T01:intron 30.0%
CACATTCTGACTTTATACTT+TGG - Chr7:85406277-85406296 None:intergenic 30.0%
CAGCCTGAAAATGATAATTA+TGG - Chr7:85405659-85405678 None:intergenic 30.0%
CTTAATAACTAGGCTAGAAA+CGG - Chr7:85403036-85403055 None:intergenic 30.0%
GACACAAGAATAAGAAGAAT+AGG - Chr7:85405343-85405362 None:intergenic 30.0%
GCCATAAGAAAATTAACAAG+TGG - Chr7:85406879-85406898 None:intergenic 30.0%
GTGGAACTTTCATTATACAA+AGG + Chr7:85406776-85406795 MsG0780041002.01.T01:CDS 30.0%
GTGTTCTAACTTGGTATATT+GGG + Chr7:85406250-85406269 MsG0780041002.01.T01:intron 30.0%
TACTATCTTAGAAGTTGTGT+TGG - Chr7:85402040-85402059 None:intergenic 30.0%
TAGACAACCAAATGTTATTG+AGG - Chr7:85406622-85406641 None:intergenic 30.0%
TATTGTAGAAGTTAGTGACA+AGG - Chr7:85404958-85404977 None:intergenic 30.0%
TCAAGTGCACAAACATAAAT+AGG - Chr7:85406067-85406086 None:intergenic 30.0%
TCACCTTAAATCTAACTCAA+AGG + Chr7:85401857-85401876 MsG0780041002.01.T02:five_prime_UTR 30.0%
TCAGGATCTTATATATAAGC+CGG + Chr7:85402105-85402124 MsG0780041002.01.T02:intron 30.0%
TCATTGAGTTCATTTGATTC+AGG + Chr7:85406719-85406738 MsG0780041002.01.T01:intron 30.0%
TCCAATACACATATATATGC+TGG - Chr7:85406119-85406138 None:intergenic 30.0%
TCTACTACATTATAGAGTCT+TGG + Chr7:85404391-85404410 MsG0780041002.01.T01:intron 30.0%
TCTCTCATGAAACAAAACAT+TGG - Chr7:85405569-85405588 None:intergenic 30.0%
TTCTTTCCTTCTTTCTTGTT+TGG + Chr7:85402471-85402490 MsG0780041002.01.T01:intron 30.0%
TTGCAGTTGGAAAAATCATA+GGG + Chr7:85402602-85402621 MsG0780041002.01.T01:intron 30.0%
TTGGAAAAATCATAGGGATA+TGG + Chr7:85402608-85402627 MsG0780041002.01.T01:five_prime_UTR 30.0%
TTGTCACTAACTTCTACAAT+AGG + Chr7:85404957-85404976 MsG0780041002.01.T01:five_prime_UTR 30.0%
TTTGCAGTTGGAAAAATCAT+AGG + Chr7:85402601-85402620 MsG0780041002.01.T01:intron 30.0%
! CTTAGTCTTCTATACCAAAT+AGG - Chr7:85405827-85405846 None:intergenic 30.0%
! CTTTTCCATCAATGATATCA+TGG - Chr7:85405507-85405526 None:intergenic 30.0%
! GTACCTTTGAGTTAGATTTA+AGG - Chr7:85401863-85401882 None:intergenic 30.0%
! GTAGTAGACCTTTGATTTAA+TGG - Chr7:85402759-85402778 None:intergenic 30.0%
! TCTCCACTAATTTTCCTATT+TGG + Chr7:85405810-85405829 MsG0780041002.01.T01:intron 30.0%
! TTACTTATGTTTTGTGAGCT+TGG + Chr7:85405913-85405932 MsG0780041002.01.T01:intron 30.0%
!! AAACCAAAGAGTATTCTTCT+AGG + Chr7:85406754-85406773 MsG0780041002.01.T01:CDS 30.0%
!! ATCATCTGGTCTTAATATGA+TGG - Chr7:85406229-85406248 None:intergenic 30.0%
!! TAGAATCCAAGTTCACTTTT+TGG + Chr7:85406041-85406060 MsG0780041002.01.T01:intron 30.0%
!!! GATTTTTTTGTTGGAGCTTT+GGG + Chr7:85406909-85406928 MsG0780041002.01.T01:CDS 30.0%
!!! TCTTTGATTTTGGCTATTCT+TGG + Chr7:85402877-85402896 MsG0780041002.01.T01:five_prime_UTR 30.0%
!!! TGATTTTTTTGTTGGAGCTT+TGG + Chr7:85406908-85406927 MsG0780041002.01.T01:CDS 30.0%
!!! TTTTTTACTGGCATGTACAA+TGG - Chr7:85407156-85407175 None:intergenic 30.0%
AAGCAATTACGCATTTGACA+CGG + Chr7:85406189-85406208 MsG0780041002.01.T01:intron 35.0%
AAGTTGCATGTGTATTCAGT+CGG - Chr7:85405702-85405721 None:intergenic 35.0%
AATAGGCCAAAAAGTGAACT+TGG - Chr7:85406050-85406069 None:intergenic 35.0%
AATGAGAAATACTGGTGGAA+AGG + Chr7:85406959-85406978 MsG0780041002.01.T01:CDS 35.0%
AATGTATGATGCAGGATATG+GGG + Chr7:85405363-85405382 MsG0780041002.01.T01:intron 35.0%
AGCATGTAAAAATGGACCAT+AGG - Chr7:85406374-85406393 None:intergenic 35.0%
AGTAAGTGCTTATGGAAACT+TGG + Chr7:85404135-85404154 MsG0780041002.01.T01:five_prime_UTR 35.0%
ATGTTATCTTGTAGCAAGTG+CGG - Chr7:85403796-85403815 None:intergenic 35.0%
ATTAGTGGAGAGTTAACCTT+TGG - Chr7:85405801-85405820 None:intergenic 35.0%
ATTGAGGATGCATTGAGTAA+AGG + Chr7:85405179-85405198 MsG0780041002.01.T01:five_prime_UTR 35.0%
CAACCAACAACCGATATAAA+CGG + Chr7:85405405-85405424 MsG0780041002.01.T01:CDS 35.0%
CAATGTATGATGCAGGATAT+GGG + Chr7:85405362-85405381 MsG0780041002.01.T01:intron 35.0%
CACAAGACTTCCGTTTATAT+CGG - Chr7:85405418-85405437 None:intergenic 35.0%
CACATGCAACTTATTGAATG+AGG + Chr7:85405710-85405729 MsG0780041002.01.T01:CDS 35.0%
CATAAGAAAGGAGAGTGAAA+TGG + Chr7:85402731-85402750 MsG0780041002.01.T01:five_prime_UTR 35.0%
CGTGTTCTAACTTGGTATAT+TGG + Chr7:85406249-85406268 MsG0780041002.01.T01:intron 35.0%
CTAAAAGGAACTTGACATTC+GGG - Chr7:85404844-85404863 None:intergenic 35.0%
GCTAAAAGGAACTTGACATT+CGG - Chr7:85404845-85404864 None:intergenic 35.0%
GGAAAATAACTTACTGATGG+TGG - Chr7:85402971-85402990 None:intergenic 35.0%
GGATATGCAGATTCATAGAA+TGG - Chr7:85405020-85405039 None:intergenic 35.0%
GTTGGTTGCAAATAATTCCA+CGG - Chr7:85405393-85405412 None:intergenic 35.0%
TAAAGCATGTGAAATGAGAG+TGG + Chr7:85406541-85406560 MsG0780041002.01.T01:CDS 35.0%
TATCTTTGCTTTACTCAGCT+TGG + Chr7:85404079-85404098 MsG0780041002.01.T01:five_prime_UTR 35.0%
TATGAGACAAAAAGGCTTTG+TGG + Chr7:85402177-85402196 MsG0780041002.01.T01:five_prime_UTR 35.0%
TCAATGTATGATGCAGGATA+TGG + Chr7:85405361-85405380 MsG0780041002.01.T01:intron 35.0%
TCCATGTTCATGCATAAGAA+AGG + Chr7:85402719-85402738 MsG0780041002.01.T01:five_prime_UTR 35.0%
TCCCAAACCTCAATAACATT+TGG + Chr7:85406612-85406631 MsG0780041002.01.T01:CDS 35.0%
TCCTTTCTTATGCATGAACA+TGG - Chr7:85402723-85402742 None:intergenic 35.0%
TTTATGTTCAGGACCTGTTA+CGG - Chr7:85405320-85405339 None:intergenic 35.0%
! CACTTACTTCTCTCAGTTTT+AGG - Chr7:85404123-85404142 None:intergenic 35.0%
! GATCCTTTTCTATTCTCCAT+TGG + Chr7:85401794-85401813 MsG0780041002.01.T02:five_prime_UTR 35.0%
! TACTACTACTGCACTTGTTT+TGG + Chr7:85406660-85406679 MsG0780041002.01.T01:intron 35.0%
! TGATTGATTGATTCCGTAAC+AGG + Chr7:85405304-85405323 MsG0780041002.01.T01:intron 35.0%
! TTCCTTCTTTCTTGTTTGGT+TGG + Chr7:85402475-85402494 MsG0780041002.01.T01:intron 35.0%
! TTGGCTATTCTTGGTAACTT+TGG + Chr7:85402886-85402905 MsG0780041002.01.T01:five_prime_UTR 35.0%
!! AACAAGGACAGATTTTGGTA+GGG + Chr7:85407005-85407024 MsG0780041002.01.T01:CDS 35.0%
!! CTTGCTATTGCAATCAATGA+AGG + Chr7:85404926-85404945 MsG0780041002.01.T01:five_prime_UTR 35.0%
!! TTTTCCAAATGTGGAGCATT+AGG - Chr7:85404180-85404199 None:intergenic 35.0%
!!! ACGGACTCTGATTTTTTTGT+TGG + Chr7:85406900-85406919 MsG0780041002.01.T01:CDS 35.0%
!!! TTGTCATGTATTTTGACCTC+TGG + Chr7:85406400-85406419 MsG0780041002.01.T01:intron 35.0%
AAATGGACCATAGGATTCCT+TGG - Chr7:85406365-85406384 None:intergenic 40.0%
AATCCTTTCCTACTTGTCCA+TGG - Chr7:85404267-85404286 None:intergenic 40.0%
ACGTAACAAAAAGAAGTGGG+TGG - Chr7:85401826-85401845 None:intergenic 40.0%
AGATTACCTGGATTTGGCAT+TGG + Chr7:85404875-85404894 MsG0780041002.01.T01:five_prime_UTR 40.0%
AGCCAACCAAACAAGAAAGA+AGG - Chr7:85402480-85402499 None:intergenic 40.0%
AGGCTGTACGTTACTTAATG+AGG + Chr7:85405673-85405692 MsG0780041002.01.T01:intron 40.0%
AGTAGCAATTCCAGCTAGAT+CGG - Chr7:85405106-85405125 None:intergenic 40.0%
AGTTGCATGTGTATTCAGTC+GGG - Chr7:85405701-85405720 None:intergenic 40.0%
ATAAGATCCTGACCTCATGA+AGG - Chr7:85402097-85402116 None:intergenic 40.0%
ATGAGTACCAAGGAATCCTA+TGG + Chr7:85406355-85406374 MsG0780041002.01.T01:intron 40.0%
ATTAAGAAACATACCCAGGG+TGG - Chr7:85404330-85404349 None:intergenic 40.0%
ATTTAGCTGGAGAAGCTAGA+CGG + Chr7:85406013-85406032 MsG0780041002.01.T01:intron 40.0%
CAAAGGTAAGAAGGCAAGAT+AGG + Chr7:85406793-85406812 MsG0780041002.01.T01:CDS 40.0%
CAAGATTTAGTTGGACGAAC+CGG - Chr7:85405954-85405973 None:intergenic 40.0%
CAAGTTAGAACACGATCATC+TGG - Chr7:85406243-85406262 None:intergenic 40.0%
CAATCTAAACCACCTGATCA+AGG - Chr7:85406305-85406324 None:intergenic 40.0%
CACATCGAAAAATGGATCGA+CGG + Chr7:85405442-85405461 MsG0780041002.01.T01:CDS 40.0%
CAGATGATCGTGTTCTAACT+TGG + Chr7:85406241-85406260 MsG0780041002.01.T01:intron 40.0%
CAGTATTGCGAACATCTACT+TGG + Chr7:85405057-85405076 MsG0780041002.01.T01:intron 40.0%
CCAACTAAATCTTGGCTGTT+GGG + Chr7:85405960-85405979 MsG0780041002.01.T01:intron 40.0%
CCACCAATGGAGAATAGAAA+AGG - Chr7:85401800-85401819 None:intergenic 40.0%
CCACCTAGAAGAATACTCTT+TGG - Chr7:85406760-85406779 None:intergenic 40.0%
CGATATAAACGGAAGTCTTG+TGG + Chr7:85405416-85405435 MsG0780041002.01.T01:CDS 40.0%
CTAAGCATGCATGTAAGGAT+GGG + Chr7:85406515-85406534 MsG0780041002.01.T01:CDS 40.0%
CTACAATAGGCTGATCATGA+TGG + Chr7:85404970-85404989 MsG0780041002.01.T01:five_prime_UTR 40.0%
CTCTTCTAAGCATGCATGTA+AGG + Chr7:85406510-85406529 MsG0780041002.01.T01:CDS 40.0%
CTGAGAGAAGTAAGTGCTTA+TGG + Chr7:85404127-85404146 MsG0780041002.01.T01:five_prime_UTR 40.0%
CTTACATGCATGCTTAGAAG+AGG - Chr7:85406512-85406531 None:intergenic 40.0%
CTTGATCAGGTGGTTTAGAT+TGG + Chr7:85406303-85406322 MsG0780041002.01.T01:intron 40.0%
CTTGTGTCAATGTATGATGC+AGG + Chr7:85405355-85405374 MsG0780041002.01.T01:intron 40.0%
GAAAAGTTCAACGCGACATA+TGG + Chr7:85404789-85404808 MsG0780041002.01.T01:five_prime_UTR 40.0%
GAAATGATTCCTTTCCACCA+TGG + Chr7:85404247-85404266 MsG0780041002.01.T01:five_prime_UTR 40.0%
GATGGAATGAGAAATACTGG+TGG + Chr7:85406954-85406973 MsG0780041002.01.T01:CDS 40.0%
GCATAGAAAAGTGAGCAAAC+TGG - Chr7:85402918-85402937 None:intergenic 40.0%
GTGGCTTGAATAGAAAGACT+CGG - Chr7:85402064-85402083 None:intergenic 40.0%
GTTGGAACTCGTGAAAATTG+AGG + Chr7:85405163-85405182 MsG0780041002.01.T01:five_prime_UTR 40.0%
TCCAACTAAATCTTGGCTGT+TGG + Chr7:85405959-85405978 MsG0780041002.01.T01:intron 40.0%
TCTAAGCATGCATGTAAGGA+TGG + Chr7:85406514-85406533 MsG0780041002.01.T01:CDS 40.0%
TCTTAGCAGAAACAGTGAGT+CGG - Chr7:85402211-85402230 None:intergenic 40.0%
TCTTATTGGAGAATGGCCAA+AGG + Chr7:85405782-85405801 MsG0780041002.01.T01:CDS 40.0%
TGGAAAAATGGCTGCGAAAA+TGG + Chr7:85405749-85405768 MsG0780041002.01.T01:CDS 40.0%
TGTCTTACACCAAGTGCTTA+TGG + Chr7:85402286-85402305 MsG0780041002.01.T01:five_prime_UTR 40.0%
TGTGGCTTCACATCGAAAAA+TGG + Chr7:85405434-85405453 MsG0780041002.01.T01:CDS 40.0%
TTGAGAGAGTGGTTTCTCAA+GGG + Chr7:85402784-85402803 MsG0780041002.01.T01:five_prime_UTR 40.0%
TTGGATTCTCTGTATCTGTC+CGG + Chr7:85405932-85405951 MsG0780041002.01.T01:intron 40.0%
! AGAAGCTTTTGCAGATTGCA+GGG + Chr7:85404738-85404757 MsG0780041002.01.T01:intron 40.0%
! CCTTTTCTATTCTCCATTGG+TGG + Chr7:85401797-85401816 MsG0780041002.01.T02:five_prime_UTR 40.0%
! CTTCCGTTTATATCGGTTGT+TGG - Chr7:85405411-85405430 None:intergenic 40.0%
! GCGTTGCAATTTTCCAAATG+TGG - Chr7:85404189-85404208 None:intergenic 40.0%
! TAGAAGCTTTTGCAGATTGC+AGG + Chr7:85404737-85404756 MsG0780041002.01.T01:intron 40.0%
!! ACTTGGTGCTTCCTTATAGA+TGG + Chr7:85406936-85406955 MsG0780041002.01.T01:CDS 40.0%
!! ATGTGCTGTTGCACTTTTTG+TGG + Chr7:85402841-85402860 MsG0780041002.01.T01:five_prime_UTR 40.0%
!! CAACAAGGACAGATTTTGGT+AGG + Chr7:85407004-85407023 MsG0780041002.01.T01:CDS 40.0%
!! CAAGTTCCTTTTAGCTGACT+GGG + Chr7:85404850-85404869 MsG0780041002.01.T01:five_prime_UTR 40.0%
!! CCAAAGAGTATTCTTCTAGG+TGG + Chr7:85406757-85406776 MsG0780041002.01.T01:CDS 40.0%
!! CGTTGAACTTTTCTAGTCAG+AGG - Chr7:85404782-85404801 None:intergenic 40.0%
!! TCAAGTTCCTTTTAGCTGAC+TGG + Chr7:85404849-85404868 MsG0780041002.01.T01:five_prime_UTR 40.0%
!! TGCAGCTTGCTGATAGAATT+AGG + Chr7:85406582-85406601 MsG0780041002.01.T01:CDS 40.0%
!!! TTTCGCAGCCATTTTTCCAA+AGG - Chr7:85405748-85405767 None:intergenic 40.0%
AAATCTTGGCTGTTGGGTCT+AGG + Chr7:85405966-85405985 MsG0780041002.01.T01:intron 45.0%
AAGTGCGGTCTGAGTCAAAA+AGG - Chr7:85403781-85403800 None:intergenic 45.0%
ACTTGGAATGTTGCTCATGC+AGG + Chr7:85405074-85405093 MsG0780041002.01.T01:intron 45.0%
AGAAAAGGATCACCTGCCTA+TGG - Chr7:85401785-85401804 None:intergenic 45.0%
ATCGAAAAATGGATCGACGG+TGG + Chr7:85405445-85405464 MsG0780041002.01.T01:CDS 45.0%
ATCTCTCCCAGTCAGCTAAA+AGG - Chr7:85404859-85404878 None:intergenic 45.0%
ATGCGTAATTGCTTGAGTGC+AGG - Chr7:85406151-85406170 None:intergenic 45.0%
ATGGCCCACAAGTTTCTTTG+AGG + Chr7:85402627-85402646 MsG0780041002.01.T01:five_prime_UTR 45.0%
CCCAACAGCCAAGATTTAGT+TGG - Chr7:85405963-85405982 None:intergenic 45.0%
CCTTGGTACTCATGCAATCA+CGG - Chr7:85406348-85406367 None:intergenic 45.0%
CGGTTCGTCCAACTAAATCT+TGG + Chr7:85405952-85405971 MsG0780041002.01.T01:intron 45.0%
CTATTCAAGCCACTCATGTC+AGG + Chr7:85402071-85402090 MsG0780041002.01.T02:intron 45.0%
CTTGAGAGAGTGGTTTCTCA+AGG + Chr7:85402783-85402802 MsG0780041002.01.T01:five_prime_UTR 45.0%
CTTGCCTAATGCTCCACATT+TGG + Chr7:85404173-85404192 MsG0780041002.01.T01:five_prime_UTR 45.0%
CTTGGAATGTTGCTCATGCA+GGG + Chr7:85405075-85405094 MsG0780041002.01.T01:intron 45.0%
GCAACAGCACATATCTGACA+TGG - Chr7:85402833-85402852 None:intergenic 45.0%
GCATGCAGAGTAGATACTTG+AGG + Chr7:85404670-85404689 MsG0780041002.01.T01:intron 45.0%
GCATGCTTAGAAGAGGTCTT+GGG - Chr7:85406505-85406524 None:intergenic 45.0%
GCCACCTCAAAGAAACTTGT+GGG - Chr7:85402634-85402653 None:intergenic 45.0%
GCTCAAATTGCTGGAATGTG+TGG + Chr7:85404899-85404918 MsG0780041002.01.T01:five_prime_UTR 45.0%
GTAGCAATTCCAGCTAGATC+GGG - Chr7:85405105-85405124 None:intergenic 45.0%
GTTCTTGTGAAAGCTTGCCT+TGG - Chr7:85405259-85405278 None:intergenic 45.0%
TACCCTCAGATACAGCAAGA+GGG - Chr7:85404302-85404321 None:intergenic 45.0%
TACGTCGAAGCATATATGGC+AGG + Chr7:85405226-85405245 MsG0780041002.01.T01:intron 45.0%
TACTACTCCTCTTGAGAGAG+TGG + Chr7:85402773-85402792 MsG0780041002.01.T01:five_prime_UTR 45.0%
TCCAACATGCGACATTTAGC+TGG + Chr7:85406000-85406019 MsG0780041002.01.T01:intron 45.0%
TCCAGCTAAATGTCGCATGT+TGG - Chr7:85406004-85406023 None:intergenic 45.0%
TGAGAAACCACTCTCTCAAG+AGG - Chr7:85402783-85402802 None:intergenic 45.0%
TGCATGCTTAGAAGAGGTCT+TGG - Chr7:85406506-85406525 None:intergenic 45.0%
TGCCACCTCAAAGAAACTTG+TGG - Chr7:85402635-85402654 None:intergenic 45.0%
TGGGAGAGATTACCTGGATT+TGG + Chr7:85404869-85404888 MsG0780041002.01.T01:five_prime_UTR 45.0%
TTACCCTCAGATACAGCAAG+AGG - Chr7:85404303-85404322 None:intergenic 45.0%
TTCCTATACGTGTGTCGAGA+CGG - Chr7:85404230-85404249 None:intergenic 45.0%
TTGGTTGTCTACAGAGATGC+AGG + Chr7:85406631-85406650 MsG0780041002.01.T01:CDS 45.0%
TTTCTACCATTCTCCTCCTG+AGG - Chr7:85406431-85406450 None:intergenic 45.0%
! ATGTGGAGCATTAGGCAAGT+TGG - Chr7:85404172-85404191 None:intergenic 45.0%
! ATTGGTGTCCCTGTGAATCA+CGG + Chr7:85406321-85406340 MsG0780041002.01.T01:intron 45.0%
! CCATGCTGCCTTTGGAAAAA+TGG + Chr7:85405737-85405756 MsG0780041002.01.T01:CDS 45.0%
! GCGTCAACAAGGACAGATTT+TGG + Chr7:85407000-85407019 MsG0780041002.01.T01:CDS 45.0%
!! CCATTTTTCCAAAGGCAGCA+TGG - Chr7:85405740-85405759 None:intergenic 45.0%
!! TTGGAGCTTTGGGTTCAACT+TGG + Chr7:85406919-85406938 MsG0780041002.01.T01:CDS 45.0%
!!! AATAATTTTTTTTTTTTTGA+GGG + Chr7:85403312-85403331 MsG0780041002.01.T01:intron 5.0%
AACCGTCTCGACACACGTAT+AGG + Chr7:85404225-85404244 MsG0780041002.01.T01:five_prime_UTR 50.0%
ACCCTCAGATACAGCAAGAG+GGG - Chr7:85404301-85404320 None:intergenic 50.0%
ACTCATGTCAGGCCTTCATG+AGG + Chr7:85402082-85402101 MsG0780041002.01.T02:intron 50.0%
ACTGGTGGAAAGGTCATGTC+TGG + Chr7:85406969-85406988 MsG0780041002.01.T01:CDS 50.0%
ATATGGCAGGACCAACTCCA+AGG + Chr7:85405239-85405258 MsG0780041002.01.T01:intron 50.0%
ATGGTCCAATCACAAGCCCT+GGG + Chr7:85406478-85406497 MsG0780041002.01.T01:CDS 50.0%
CCACCATGGACAAGTAGGAA+AGG + Chr7:85404261-85404280 MsG0780041002.01.T01:five_prime_UTR 50.0%
CCGTGATTGCATGAGTACCA+AGG + Chr7:85406345-85406364 MsG0780041002.01.T01:intron 50.0%
CCTTTCCACCATGGACAAGT+AGG + Chr7:85404256-85404275 MsG0780041002.01.T01:five_prime_UTR 50.0%
CCTTTCCTACTTGTCCATGG+TGG - Chr7:85404264-85404283 None:intergenic 50.0%
GAAAAATGGATCGACGGTGG+TGG + Chr7:85405448-85405467 MsG0780041002.01.T01:CDS 50.0%
GAATGTGAGCGACCTTGATC+AGG + Chr7:85406290-85406309 MsG0780041002.01.T01:intron 50.0%
GCTGATCATGATGGCTGCAA+GGG + Chr7:85404979-85404998 MsG0780041002.01.T01:five_prime_UTR 50.0%
GTGAAAGCTTGCCTTGGAGT+TGG - Chr7:85405253-85405272 None:intergenic 50.0%
TATGGTCCAATCACAAGCCC+TGG + Chr7:85406477-85406496 MsG0780041002.01.T01:CDS 50.0%
TCATGAAGGCCTGACATGAG+TGG - Chr7:85402083-85402102 None:intergenic 50.0%
TGAGCTCCAATGCCAAATCC+AGG - Chr7:85404884-85404903 None:intergenic 50.0%
TGAGGGTAATCATCCACCCT+GGG + Chr7:85404314-85404333 MsG0780041002.01.T01:five_prime_UTR 50.0%
TGGCTACTTGAGCGTCAACA+AGG + Chr7:85406989-85407008 MsG0780041002.01.T01:CDS 50.0%
TTCGGGTCGCTACAGTTTGA+TGG - Chr7:85404827-85404846 None:intergenic 50.0%
! AGTATGAAGCTAGCCTGGGA+AGG + Chr7:85406835-85406854 MsG0780041002.01.T01:CDS 50.0%
! CCTACTTGTCCATGGTGGAA+AGG - Chr7:85404259-85404278 None:intergenic 50.0%
! GCCCACAAGTTTCTTTGAGG+TGG + Chr7:85402630-85402649 MsG0780041002.01.T01:five_prime_UTR 50.0%
! GCTGAGTATGAAGCTAGCCT+GGG + Chr7:85406831-85406850 MsG0780041002.01.T01:CDS 50.0%
! GGCATTGGAGCTCAAATTGC+TGG + Chr7:85404890-85404909 MsG0780041002.01.T01:five_prime_UTR 50.0%
! GTATGAAGCTAGCCTGGGAA+GGG + Chr7:85406836-85406855 MsG0780041002.01.T01:CDS 50.0%
! TTGGTGTCCCTGTGAATCAC+GGG + Chr7:85406322-85406341 MsG0780041002.01.T01:intron 50.0%
AAGTGGGTGGCAACCACCAA+TGG - Chr7:85401813-85401832 None:intergenic 55.0%
AATCACGGCCCGTGATTCAC+AGG - Chr7:85406333-85406352 None:intergenic 55.0%
AGAAGAGGTCTTGGGACCCA+GGG - Chr7:85406497-85406516 None:intergenic 55.0%
AGAATGTCGCCAACGTGCGT+TGG + Chr7:85405145-85405164 MsG0780041002.01.T01:five_prime_UTR 55.0%
ATCACGGCCCGTGATTCACA+GGG - Chr7:85406332-85406351 None:intergenic 55.0%
CCCTCAGATACAGCAAGAGG+GGG - Chr7:85404300-85404319 None:intergenic 55.0%
CTGAGGGTAATCATCCACCC+TGG + Chr7:85404313-85404332 MsG0780041002.01.T01:five_prime_UTR 55.0%
GAGATGCCTCAGGAGGAGAA+TGG + Chr7:85406422-85406441 MsG0780041002.01.T01:intron 55.0%
GCTGACTGGGAGAGATTACC+TGG + Chr7:85404863-85404882 MsG0780041002.01.T01:five_prime_UTR 55.0%
GGCTGAGTATGAAGCTAGCC+TGG + Chr7:85406830-85406849 MsG0780041002.01.T01:CDS 55.0%
GGCTGATCATGATGGCTGCA+AGG + Chr7:85404978-85404997 MsG0780041002.01.T01:five_prime_UTR 55.0%
TAGAAGAGGTCTTGGGACCC+AGG - Chr7:85406498-85406517 None:intergenic 55.0%
TAGTGCTTCTCTCCCTTCCC+AGG - Chr7:85406851-85406870 None:intergenic 55.0%
TCACGAGTTCCAACGCACGT+TGG - Chr7:85405157-85405176 None:intergenic 55.0%
TGTCAGGCCTTCATGAGGTC+AGG + Chr7:85402087-85402106 MsG0780041002.01.T02:intron 55.0%
TGTGAGCGACCTTGATCAGG+TGG + Chr7:85406293-85406312 MsG0780041002.01.T01:intron 55.0%
! CCCCCTCTTGCTGTATCTGA+GGG + Chr7:85404297-85404316 MsG0780041002.01.T01:five_prime_UTR 55.0%
! TTGACCTCTGGAGATGCCTC+AGG + Chr7:85406412-85406431 MsG0780041002.01.T01:intron 55.0%
TGGGACCCAGGGCTTGTGAT+TGG - Chr7:85406486-85406505 None:intergenic 60.0%
! ACCTCTGGAGATGCCTCAGG+AGG + Chr7:85406415-85406434 MsG0780041002.01.T01:intron 60.0%
! GCCCCCTCTTGCTGTATCTG+AGG + Chr7:85404296-85404315 MsG0780041002.01.T01:five_prime_UTR 60.0%
! TCCTCCTGAGGCATCTCCAG+AGG - Chr7:85406419-85406438 None:intergenic 60.0%
CAGGGCTGTCCCGATCTAGC+TGG + Chr7:85405093-85405112 MsG0780041002.01.T01:intron 65.0%
GCAGGATATGGGGCGATCCG+TGG + Chr7:85405373-85405392 MsG0780041002.01.T01:intron 65.0%
!! GAGGAGCGCCATGCTGCCTT+TGG + Chr7:85405729-85405748 MsG0780041002.01.T01:CDS 65.0%
! TCGACGGTGGTGGCGAGCAC+AGG + Chr7:85405458-85405477 MsG0780041002.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 85401781 85407187 85401781 ID=MsG0780041002.01;Name=MsG0780041002.01
Chr7 mRNA 85402147 85407187 85402147 ID=MsG0780041002.01.T01;Parent=MsG0780041002.01;Name=MsG0780041002.01.T01;_AED=0.50;_eAED=0.50;_QI=1318|1|1|1|0.25|0.33|9|162|251
Chr7 exon 85402147 85402363 85402147 ID=MsG0780041002.01.T01:exon:41788;Parent=MsG0780041002.01.T01
Chr7 five_prime_UTR 85402147 85402363 85402147 ID=MsG0780041002.01.T01:five_prime_utr;Parent=MsG0780041002.01.T01
Chr7 five_prime_UTR 85402608 85402976 85402608 ID=MsG0780041002.01.T01:five_prime_utr;Parent=MsG0780041002.01.T01
Chr7 five_prime_UTR 85403998 85404335 85403998 ID=MsG0780041002.01.T01:five_prime_utr;Parent=MsG0780041002.01.T01
Chr7 five_prime_UTR 85404752 85405000 85404752 ID=MsG0780041002.01.T01:five_prime_utr;Parent=MsG0780041002.01.T01
Chr7 five_prime_UTR 85405096 85405240 85405096 ID=MsG0780041002.01.T01:five_prime_utr;Parent=MsG0780041002.01.T01
Chr7 CDS 85405241 85405260 85405241 ID=MsG0780041002.01.T01:cds;Parent=MsG0780041002.01.T01
Chr7 CDS 85405377 85405479 85405377 ID=MsG0780041002.01.T01:cds;Parent=MsG0780041002.01.T01
Chr7 CDS 85405675 85405803 85405675 ID=MsG0780041002.01.T01:cds;Parent=MsG0780041002.01.T01
Chr7 CDS 85406434 85406652 85406434 ID=MsG0780041002.01.T01:cds;Parent=MsG0780041002.01.T01
Chr7 CDS 85406741 85407025 85406741 ID=MsG0780041002.01.T01:cds;Parent=MsG0780041002.01.T01
Chr7 three_prime_UTR 85407026 85407187 85407026 ID=MsG0780041002.01.T01:three_prime_utr;Parent=MsG0780041002.01.T01
Chr7 mRNA 85401781 85407187 85401781 ID=MsG0780041002.01.T02;Parent=MsG0780041002.01;Name=MsG0780041002.01.T02;_AED=0.50;_eAED=0.50;_QI=1199|1|1|1|0.25|0.33|9|162|251
Chr7 exon 85401781 85401878 85401781 ID=MsG0780041002.01.T02:exon:41797;Parent=MsG0780041002.01.T02
Chr7 five_prime_UTR 85401781 85401878 85401781 ID=MsG0780041002.01.T02:five_prime_utr;Parent=MsG0780041002.01.T02
Chr7 five_prime_UTR 85402608 85402976 85402608 ID=MsG0780041002.01.T02:five_prime_utr;Parent=MsG0780041002.01.T02
Chr7 five_prime_UTR 85403998 85404335 85403998 ID=MsG0780041002.01.T02:five_prime_utr;Parent=MsG0780041002.01.T02
Chr7 five_prime_UTR 85404752 85405000 85404752 ID=MsG0780041002.01.T02:five_prime_utr;Parent=MsG0780041002.01.T02
Chr7 five_prime_UTR 85405096 85405240 85405096 ID=MsG0780041002.01.T02:five_prime_utr;Parent=MsG0780041002.01.T02
Chr7 CDS 85405241 85405260 85405241 ID=MsG0780041002.01.T02:cds;Parent=MsG0780041002.01.T02
Chr7 CDS 85405377 85405479 85405377 ID=MsG0780041002.01.T02:cds;Parent=MsG0780041002.01.T02
Chr7 CDS 85405675 85405803 85405675 ID=MsG0780041002.01.T02:cds;Parent=MsG0780041002.01.T02
Chr7 CDS 85406434 85406652 85406434 ID=MsG0780041002.01.T02:cds;Parent=MsG0780041002.01.T02
Chr7 CDS 85406741 85407025 85406741 ID=MsG0780041002.01.T02:cds;Parent=MsG0780041002.01.T02
Chr7 three_prime_UTR 85407026 85407187 85407026 ID=MsG0780041002.01.T02:three_prime_utr;Parent=MsG0780041002.01.T02
Chr7 mRNA 85403973 85405006 85403973 ID=MsG0780041002.01.T03;Parent=MsG0780041002.01;Name=MsG0780041002.01.T03;_AED=0.50;_eAED=0.53;_QI=0|0|0|1|0|0|2|0|216
Chr7 exon 85403973 85404368 85403973 ID=MsG0780041002.01.T03:exon:41798;Parent=MsG0780041002.01.T03
Chr7 exon 85404752 85405006 85404752 ID=MsG0780041002.01.T03:exon:41799;Parent=MsG0780041002.01.T03
Chr7 CDS 85403973 85404368 85403973 ID=MsG0780041002.01.T03:cds;Parent=MsG0780041002.01.T03
Chr7 CDS 85404752 85405006 85404752 ID=MsG0780041002.01.T03:cds;Parent=MsG0780041002.01.T03
Gene Sequence

>MsG0780041002.01.T01

ATGGCAGGACCAACTCCAAGGATATGGGGCGATCCGTGGAATTATTTGCAACCAACAACCGATATAAACGGAAGTCTTGTGGCTTCACATCGAAAAATGGATCGACGGTGGTGGCGAGCACAGGCTGTACGTTACTTAATGAGGTTCCCGACTGAATACACATGCAACTTATTGAATGAGGAGCGCCATGCTGCCTTTGGAAAAATGGCTGCGAAAATGGTTCTAAAAAGTCTTATTGGAGAATGGCCAAAGGAGGAGAATGGTAGAAAGCCAAAGTCTGATATTGATAAATTTGTATGGTCCAATCACAAGCCCTGGGTCCCAAGACCTCTTCTAAGCATGCATGTAAGGATGGGAGATAAAGCATGTGAAATGAGAGTGGTTGAATTTGAAGAGTACATGCAGCTTGCTGATAGAATTAGGAGTCATTTCCCAAACCTCAATAACATTTGGTTGTCTACAGAGATGCAGGAAGTGATAGACAAAACCAAAGAGTATTCTTCTAGGTGGAACTTTCATTATACAAAGGTAAGAAGGCAAGATAGGAGTAATGTTTCAATGGCTGAGTATGAAGCTAGCCTGGGAAGGGAGAGAAGCACTAATTATCCACTTGTTAATTTTCTTATGGCTACGGACTCTGATTTTTTTGTTGGAGCTTTGGGTTCAACTTGGTGCTTCCTTATAGATGGAATGAGAAATACTGGTGGAAAGGTCATGTCTGGCTACTTGAGCGTCAACAAGGACAGATTTTGGTAG

>MsG0780041002.01.T03

GACATTTTTTGCATTGTGACAACAGCACAGTGCTCCTTTAAACCTAAAGAAATAGAAAGATTAACAGATTTGAAGAGCAGAAAAGAGATTAATCAAGATGAAAGGGTATCTTTGCTTTACTCAGCTTGGAGTTTGTGTTTAACTGAACCTAAAACTGAGAGAAGTAAGTGCTTATGGAAACTTGGTATTAGTGAGTCCAACTTGCCTAATGCTCCACATTTGGAAAATTGCAACGCGAAATCGCAGCTGCATAACCGTCTCGACACACGTATAGGAAATGATTCCTTTCCACCATGGACAAGTAGGAAAGGATTGTTGAACATGCCCCCTCTTGCTGTATCTGAGGGTAATCATCCACCCTGGGTATGTTTCTTAATTATTGGTACTGTATTTAATATTGCAGGGTCTGATGAAGAAAACTATCCTCTGACTAGAAAAGTTCAACGCGACATATGGATTCATCAGCATCCATCAAACTGTAGCGACCCGAATGTCAAGTTCCTTTTAGCTGACTGGGAGAGATTACCTGGATTTGGCATTGGAGCTCAAATTGCTGGAATGTGTGGACTTCTTGCTATTGCAATCAATGAAGGAAGAGTCCTTGTCACTAACTTCTACAATAGGCTGATCATGATGGCTGCAAGGGTATAA

>MsG0780041002.01.T02

ATGGCAGGACCAACTCCAAGGATATGGGGCGATCCGTGGAATTATTTGCAACCAACAACCGATATAAACGGAAGTCTTGTGGCTTCACATCGAAAAATGGATCGACGGTGGTGGCGAGCACAGGCTGTACGTTACTTAATGAGGTTCCCGACTGAATACACATGCAACTTATTGAATGAGGAGCGCCATGCTGCCTTTGGAAAAATGGCTGCGAAAATGGTTCTAAAAAGTCTTATTGGAGAATGGCCAAAGGAGGAGAATGGTAGAAAGCCAAAGTCTGATATTGATAAATTTGTATGGTCCAATCACAAGCCCTGGGTCCCAAGACCTCTTCTAAGCATGCATGTAAGGATGGGAGATAAAGCATGTGAAATGAGAGTGGTTGAATTTGAAGAGTACATGCAGCTTGCTGATAGAATTAGGAGTCATTTCCCAAACCTCAATAACATTTGGTTGTCTACAGAGATGCAGGAAGTGATAGACAAAACCAAAGAGTATTCTTCTAGGTGGAACTTTCATTATACAAAGGTAAGAAGGCAAGATAGGAGTAATGTTTCAATGGCTGAGTATGAAGCTAGCCTGGGAAGGGAGAGAAGCACTAATTATCCACTTGTTAATTTTCTTATGGCTACGGACTCTGATTTTTTTGTTGGAGCTTTGGGTTCAACTTGGTGCTTCCTTATAGATGGAATGAGAAATACTGGTGGAAAGGTCATGTCTGGCTACTTGAGCGTCAACAAGGACAGATTTTGGTAG

Protein sequence

>MsG0780041002.01.T01

MAGPTPRIWGDPWNYLQPTTDINGSLVASHRKMDRRWWRAQAVRYLMRFPTEYTCNLLNEERHAAFGKMAAKMVLKSLIGEWPKEENGRKPKSDIDKFVWSNHKPWVPRPLLSMHVRMGDKACEMRVVEFEEYMQLADRIRSHFPNLNNIWLSTEMQEVIDKTKEYSSRWNFHYTKVRRQDRSNVSMAEYEASLGRERSTNYPLVNFLMATDSDFFVGALGSTWCFLIDGMRNTGGKVMSGYLSVNKDRFW*

>MsG0780041002.01.T03

DIFCIVTTAQCSFKPKEIERLTDLKSRKEINQDERVSLLYSAWSLCLTEPKTERSKCLWKLGISESNLPNAPHLENCNAKSQLHNRLDTRIGNDSFPPWTSRKGLLNMPPLAVSEGNHPPWVCFLIIGTVFNIAGSDEENYPLTRKVQRDIWIHQHPSNCSDPNVKFLLADWERLPGFGIGAQIAGMCGLLAIAINEGRVLVTNFYNRLIMMAARV*

>MsG0780041002.01.T02

MAGPTPRIWGDPWNYLQPTTDINGSLVASHRKMDRRWWRAQAVRYLMRFPTEYTCNLLNEERHAAFGKMAAKMVLKSLIGEWPKEENGRKPKSDIDKFVWSNHKPWVPRPLLSMHVRMGDKACEMRVVEFEEYMQLADRIRSHFPNLNNIWLSTEMQEVIDKTKEYSSRWNFHYTKVRRQDRSNVSMAEYEASLGRERSTNYPLVNFLMATDSDFFVGALGSTWCFLIDGMRNTGGKVMSGYLSVNKDRFW*