Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023375.01.T01 | XP_039685180.1 | 90.955 | 199 | 12 | 2 | 39 | 236 | 1 | 194 | 6.14E-125 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023375.01.T01 | Q9SJ02 | 55.385 | 195 | 81 | 3 | 39 | 230 | 1 | 192 | 7.68E-61 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023375.01.T01 | A0A396GPG0 | 90.955 | 199 | 12 | 2 | 39 | 236 | 1 | 194 | 2.93e-125 | 362 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000719.01 | MsG0480023375.01 | 0.816516 | 5.311987e-52 | 3.771930e-49 |
| MsG0180001147.01 | MsG0480023375.01 | 0.806608 | 7.574278e-50 | 4.128852e-47 |
| MsG0180001254.01 | MsG0480023375.01 | -0.805216 | 1.485661e-49 | 7.815143e-47 |
| MsG0180001588.01 | MsG0480023375.01 | -0.826905 | 2.098882e-54 | 1.995067e-51 |
| MsG0180001615.01 | MsG0480023375.01 | 0.807189 | 5.706371e-50 | 3.157900e-47 |
| MsG0180003905.01 | MsG0480023375.01 | -0.819687 | 1.018740e-52 | 7.894154e-50 |
| MsG0180004124.01 | MsG0480023375.01 | 0.828297 | 9.722705e-55 | 9.623858e-52 |
| MsG0180004125.01 | MsG0480023375.01 | 0.831776 | 1.378265e-55 | 1.510987e-52 |
| MsG0180004828.01 | MsG0480023375.01 | -0.841162 | 5.615369e-58 | 8.180103e-55 |
| MsG0180005338.01 | MsG0480023375.01 | 0.866918 | 2.006239e-65 | 6.877493e-62 |
| MsG0180005555.01 | MsG0480023375.01 | 0.820494 | 6.658269e-53 | 5.276521e-50 |
| MsG0180005556.01 | MsG0480023375.01 | 0.822209 | 2.677270e-53 | 2.226282e-50 |
| MsG0180005767.01 | MsG0480023375.01 | 0.809692 | 1.668569e-50 | 9.863337e-48 |
| MsG0180005819.01 | MsG0480023375.01 | -0.807283 | 5.452091e-50 | 3.024573e-47 |
| MsG0180005898.01 | MsG0480023375.01 | 0.814734 | 1.324968e-51 | 8.961661e-49 |
| MsG0180006063.01 | MsG0480023375.01 | 0.842578 | 2.373935e-58 | 3.615211e-55 |
| MsG0180006076.01 | MsG0480023375.01 | 0.843499 | 1.349913e-58 | 2.116056e-55 |
| MsG0180006183.01 | MsG0480023375.01 | -0.854970 | 8.631413e-62 | 1.961935e-58 |
| MsG0280006319.01 | MsG0480023375.01 | 0.808040 | 3.765282e-50 | 2.130383e-47 |
| MsG0280010617.01 | MsG0480023375.01 | -0.827049 | 1.938811e-54 | 1.850543e-51 |
| MsG0280010696.01 | MsG0480023375.01 | 0.803388 | 3.570672e-49 | 1.791987e-46 |
| MsG0280010854.01 | MsG0480023375.01 | 0.829657 | 4.553165e-55 | 4.690142e-52 |
| MsG0280011036.01 | MsG0480023375.01 | 0.859961 | 2.878522e-63 | 7.740712e-60 |
| MsG0380012818.01 | MsG0480023375.01 | -0.824027 | 1.007924e-53 | 8.823649e-51 |
| MsG0380012931.01 | MsG0480023375.01 | 0.802749 | 4.840085e-49 | 2.389814e-46 |
| MsG0380013063.01 | MsG0480023375.01 | 0.819312 | 1.240785e-52 | 9.513912e-50 |
| MsG0380014544.01 | MsG0480023375.01 | -0.839885 | 1.212170e-57 | 1.697185e-54 |
| MsG0380014646.01 | MsG0480023375.01 | 0.823910 | 1.073878e-53 | 9.371013e-51 |
| MsG0380014735.01 | MsG0480023375.01 | 0.805174 | 1.516462e-49 | 7.968722e-47 |
| MsG0480018486.01 | MsG0480023375.01 | -0.801228 | 9.942594e-49 | 4.723117e-46 |
| MsG0480018767.01 | MsG0480023375.01 | -0.820496 | 6.652374e-53 | 5.272040e-50 |
| MsG0480021151.01 | MsG0480023375.01 | 0.872394 | 3.288679e-67 | 1.374036e-63 |
| MsG0480021175.01 | MsG0480023375.01 | -0.839525 | 1.504148e-57 | 2.082604e-54 |
| MsG0480021226.01 | MsG0480023375.01 | -0.807778 | 4.280728e-50 | 2.405462e-47 |
| MsG0480021740.01 | MsG0480023375.01 | -0.812472 | 4.167817e-51 | 2.652516e-48 |
| MsG0480022241.01 | MsG0480023375.01 | 0.835891 | 1.288692e-56 | 1.597399e-53 |
| MsG0480022242.01 | MsG0480023375.01 | 0.829436 | 5.154709e-55 | 5.275284e-52 |
| MsG0480022244.01 | MsG0480023375.01 | 0.827734 | 1.328329e-54 | 1.293386e-51 |
| MsG0480023125.01 | MsG0480023375.01 | -0.828120 | 1.072350e-54 | 1.056101e-51 |
| MsG0480023375.01 | MsG0480023386.01 | 0.853738 | 1.959358e-61 | 4.275960e-58 |
| MsG0480023375.01 | MsG0480023414.01 | -0.818433 | 1.965352e-52 | 1.471044e-49 |
| MsG0480023375.01 | MsG0480023507.01 | 0.804972 | 1.671254e-49 | 8.736746e-47 |
| MsG0480023375.01 | MsG0480023626.01 | -0.826257 | 2.996405e-54 | 2.795584e-51 |
| MsG0480023375.01 | MsG0480023663.01 | -0.812185 | 4.814602e-51 | 3.040449e-48 |
| MsG0480023375.01 | MsG0580024471.01 | 0.804864 | 1.760424e-49 | 9.177830e-47 |
| MsG0480023375.01 | MsG0580024538.01 | 0.807842 | 4.148236e-50 | 2.334880e-47 |
| MsG0480023375.01 | MsG0580025153.01 | 0.818929 | 1.516437e-52 | 1.150773e-49 |
| MsG0480023375.01 | MsG0580025464.01 | -0.808924 | 2.438344e-50 | 1.412044e-47 |
| MsG0480023375.01 | MsG0580026237.01 | 0.836001 | 1.208347e-56 | 1.502838e-53 |
| MsG0480023375.01 | MsG0580026282.01 | -0.822099 | 2.839009e-53 | 2.353221e-50 |
| MsG0480023375.01 | MsG0580027854.01 | -0.801255 | 9.815404e-49 | 4.665945e-46 |
| MsG0480023375.01 | MsG0580028302.01 | -0.807801 | 4.233496e-50 | 2.380361e-47 |
| MsG0480023375.01 | MsG0580028364.01 | -0.815667 | 8.219899e-52 | 5.703032e-49 |
| MsG0480023375.01 | MsG0580030141.01 | -0.848583 | 5.587792e-60 | 1.030241e-56 |
| MsG0480023375.01 | MsG0680031356.01 | -0.812492 | 4.125272e-51 | 2.626760e-48 |
| MsG0480023375.01 | MsG0680031789.01 | 0.803429 | 3.500988e-49 | 1.758914e-46 |
| MsG0480023375.01 | MsG0680033645.01 | -0.821686 | 3.538919e-53 | 2.899298e-50 |
| MsG0480023375.01 | MsG0680035905.01 | -0.808802 | 2.589208e-50 | 1.494558e-47 |
| MsG0480023375.01 | MsG0780037982.01 | 0.832734 | 7.982558e-56 | 9.001338e-53 |
| MsG0480023375.01 | MsG0780038919.01 | -0.823878 | 1.092900e-53 | 9.528286e-51 |
| MsG0480023375.01 | MsG0780039536.01 | -0.844691 | 6.461531e-59 | 1.051490e-55 |
| MsG0480023375.01 | MsG0780040276.01 | -0.820061 | 8.366961e-53 | 6.552209e-50 |
| MsG0480023375.01 | MsG0780040367.01 | -0.802183 | 6.329852e-49 | 3.080517e-46 |
| MsG0480023375.01 | MsG0780040460.01 | -0.807155 | 5.802057e-50 | 3.207965e-47 |
| MsG0480023375.01 | MsG0780040978.01 | -0.806866 | 6.680123e-50 | 3.665971e-47 |
| MsG0480023375.01 | MsG0780041823.01 | -0.800919 | 1.149570e-48 | 5.418722e-46 |
| MsG0480023375.01 | MsG0880042392.01 | -0.808532 | 2.956657e-50 | 1.694722e-47 |
| MsG0480023375.01 | MsG0880043495.01 | -0.803785 | 2.952928e-49 | 1.497246e-46 |
| MsG0480023375.01 | MsG0880044317.01 | 0.828333 | 9.527480e-55 | 9.440780e-52 |
| MsG0480023375.01 | MsG0880044318.01 | 0.803365 | 3.609931e-49 | 1.810565e-46 |
| MsG0480023375.01 | MsG0880044436.01 | 0.808416 | 3.130036e-50 | 1.788686e-47 |
| MsG0480023375.01 | MsG0880044545.01 | 0.805187 | 1.506553e-49 | 7.919198e-47 |
| MsG0480023375.01 | MsG0880045356.01 | -0.837966 | 3.804403e-57 | 5.023117e-54 |
| MsG0480023375.01 | MsG0880045394.01 | 0.860446 | 2.054212e-63 | 5.616866e-60 |
| MsG0480023375.01 | MsG0880045761.01 | 0.854493 | 1.186848e-61 | 2.655349e-58 |
| MsG0480023375.01 | MsG0880045989.01 | -0.802760 | 4.815403e-49 | 2.378286e-46 |
| MsG0480023375.01 | MsG0880045991.01 | -0.815121 | 1.087488e-51 | 7.432440e-49 |
| MsG0480023375.01 | MsG0880047090.01 | -0.814293 | 1.658556e-51 | 1.108545e-48 |
| MsG0480023375.01 | MsG0880047414.01 | -0.809780 | 1.597309e-50 | 9.464314e-48 |
| MsG0380015393.01 | MsG0480023375.01 | -0.809108 | 2.227101e-50 | 1.296160e-47 |
| MsG0380015402.01 | MsG0480023375.01 | -0.829356 | 5.390295e-55 | 5.504225e-52 |
| MsG0380015656.01 | MsG0480023375.01 | -0.838429 | 2.890584e-57 | 3.870697e-54 |
| MsG0380015828.01 | MsG0480023375.01 | 0.861745 | 8.265642e-64 | 2.362691e-60 |
| MsG0380016031.01 | MsG0480023375.01 | -0.806031 | 1.002067e-49 | 5.382840e-47 |
| MsG0380016065.01 | MsG0480023375.01 | 0.855338 | 6.748485e-62 | 1.553025e-58 |
| MsG0380016066.01 | MsG0480023375.01 | 0.878362 | 2.987158e-69 | 1.555285e-65 |
| MsG0380016143.01 | MsG0480023375.01 | -0.807990 | 3.859351e-50 | 2.180784e-47 |
| MsG0380016250.01 | MsG0480023375.01 | -0.809245 | 2.081075e-50 | 1.215648e-47 |
| MsG0380016819.01 | MsG0480023375.01 | -0.853000 | 3.190524e-61 | 6.792324e-58 |
| MsG0380017416.01 | MsG0480023375.01 | -0.831716 | 1.425387e-55 | 1.559829e-52 |
| MsG0380017666.01 | MsG0480023375.01 | -0.826301 | 2.924875e-54 | 2.732252e-51 |
| MsG0380017826.01 | MsG0480023375.01 | -0.809184 | 2.144518e-50 | 1.250659e-47 |
| MsG0380017918.01 | MsG0480023375.01 | 0.816073 | 6.674302e-52 | 4.682407e-49 |
| MsG0480018228.01 | MsG0480023375.01 | -0.811031 | 8.580972e-51 | 5.255204e-48 |
| MsG0480018362.01 | MsG0480023375.01 | -0.803217 | 3.872611e-49 | 1.935076e-46 |
| MsG0280007085.01 | MsG0480023375.01 | -0.822540 | 2.243249e-53 | 1.883169e-50 |
| MsG0280007423.01 | MsG0480023375.01 | 0.848893 | 4.584824e-60 | 8.539072e-57 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023375.01.T01 | AT2G21970 | 55.385 | 195 | 81 | 3 | 39 | 230 | 1 | 192 | 7.83e-62 | 192 |
Find 80 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACAAACTGATTCTTTAA+TGG | 0.149334 | 4:+84334608 | MsG0480023375.01.T01:CDS |
| ATGTTTGTGTTCGCGCCTTC+TGG | 0.200953 | 4:-84334750 | None:intergenic |
| TTCTTTACGGGTCTTGATTA+TGG | 0.222006 | 4:-84334829 | None:intergenic |
| GCCTTCTGGTTCACTCGGTT+TGG | 0.276085 | 4:-84334736 | None:intergenic |
| CTTGCATGTCTTCTTCTTTA+CGG | 0.282945 | 4:-84334842 | None:intergenic |
| TTGCATGTCTTCTTCTTTAC+GGG | 0.300636 | 4:-84334841 | None:intergenic |
| CTTAGAACTCTCGATATATT+CGG | 0.302152 | 4:-84334901 | None:intergenic |
| CCTTCTGGTTCACTCGGTTT+GGG | 0.307109 | 4:-84334735 | None:intergenic |
| TTGTTTGGGTGCGGTTACTA+TGG | 0.311981 | 4:+84335204 | MsG0480023375.01.T01:CDS |
| GAATTCGGTGTTCAGGAAAA+TGG | 0.321728 | 4:+84335150 | MsG0480023375.01.T01:CDS |
| GAGGCGGGTGGGATTTGTTT+GGG | 0.354432 | 4:+84335190 | MsG0480023375.01.T01:CDS |
| ACTTGAGAAGTGGTAGTTGT+AGG | 0.364804 | 4:-84334569 | None:intergenic |
| GGAGGCGGGTGGGATTTGTT+TGG | 0.366265 | 4:+84335189 | MsG0480023375.01.T01:CDS |
| ATGTAACTGATTTCATTTAG+TGG | 0.375551 | 4:+84335633 | MsG0480023375.01.T01:three_prime_UTR |
| TGGTTCACTCGGTTTGGGTT+TGG | 0.379173 | 4:-84334730 | None:intergenic |
| GAACGAGACGATGATACTTT+TGG | 0.405757 | 4:-84334669 | None:intergenic |
| GGAGTTGGTGACGGGGAATT+CGG | 0.411121 | 4:+84335135 | MsG0480023375.01.T01:CDS |
| CTTGAGAAGTGGTAGTTGTA+GGG | 0.421678 | 4:-84334568 | None:intergenic |
| TTCAGGAAAATGGATATTGC+AGG | 0.423134 | 4:+84335160 | MsG0480023375.01.T01:CDS |
| CGCGAATTTAGTATTGAACT+TGG | 0.427182 | 4:+84335489 | MsG0480023375.01.T01:three_prime_UTR |
| TGACGGGGAATTCGGTGTTC+AGG | 0.428337 | 4:+84335143 | MsG0480023375.01.T01:CDS |
| AATGAACGAACGAACGTTGA+AGG | 0.431669 | 4:-84334537 | None:intergenic |
| ATCAATTAGCGAATCAATGA+AGG | 0.432023 | 4:-84335296 | None:intergenic |
| CGGAGATGATTTCGAAATCC+TGG | 0.437279 | 4:-84334929 | None:intergenic |
| CTATGGCGGCAATGTTTGCT+TGG | 0.440446 | 4:+84335221 | MsG0480023375.01.T01:CDS |
| TTCATTATTCAAATTTAAAG+TGG | 0.447869 | 4:+84335597 | MsG0480023375.01.T01:three_prime_UTR |
| GTGACGGTGGAGTTGGTGAC+GGG | 0.448839 | 4:+84335127 | MsG0480023375.01.T01:CDS |
| CTAATTGATCAAATCGTTGA+CGG | 0.458559 | 4:+84335310 | MsG0480023375.01.T01:CDS |
| GTCTTGATTATGGCGCCGAC+TGG | 0.478139 | 4:-84334819 | None:intergenic |
| CGTTCCCGCCCCAGAAAACC+TGG | 0.481238 | 4:+84334687 | MsG0480023375.01.T01:CDS |
| TGTTACCATGGCGAGGCGGC+CGG | 0.483455 | 4:-84334949 | None:intergenic |
| CCGCCCCAGAAAACCTGGTC+CGG | 0.484254 | 4:+84334692 | MsG0480023375.01.T01:CDS |
| AAGAATCAGTTTGTTTGTGA+GGG | 0.497960 | 4:-84334602 | None:intergenic |
| TTGGTGACGGAAAATTGAAC+CGG | 0.499068 | 4:-84334711 | None:intergenic |
| GATTATGGCGCCGACTGGAT+CGG | 0.505400 | 4:-84334814 | None:intergenic |
| AATGGATATTGCAGGGATAA+CGG | 0.508574 | 4:+84335168 | MsG0480023375.01.T01:CDS |
| TTCGCGCCTTCTGGTTCACT+CGG | 0.509001 | 4:-84334741 | None:intergenic |
| ACTCGGTTTGGGTTTGGTGA+CGG | 0.510065 | 4:-84334724 | None:intergenic |
| AAAGTTTGAGACTTGAGAAG+TGG | 0.510886 | 4:-84334579 | None:intergenic |
| TTCGGAAAGAGTGGCGAAGA+AGG | 0.517357 | 4:-84334883 | None:intergenic |
| AAAGAATCAGTTTGTTTGTG+AGG | 0.521674 | 4:-84334603 | None:intergenic |
| TATTGCAGGGATAACGGAGG+CGG | 0.525078 | 4:+84335174 | MsG0480023375.01.T01:CDS |
| ACGGAAAATTGAACCGGACC+AGG | 0.525085 | 4:-84334705 | None:intergenic |
| GCAGATGGTGTTTGCAGCGA+CGG | 0.525390 | 4:+84335105 | MsG0480023375.01.T01:intron |
| ATGTTCATAGATTGTAAGAT+GGG | 0.530332 | 4:+84335534 | MsG0480023375.01.T01:three_prime_UTR |
| TTTGGGTGCGGTTACTATGG+CGG | 0.548728 | 4:+84335207 | MsG0480023375.01.T01:CDS |
| CTATGCACTCTCAGATCATA+CGG | 0.549836 | 4:+84334789 | MsG0480023375.01.T01:CDS |
| GGGTGGGATTTGTTTGGGTG+CGG | 0.551031 | 4:+84335195 | MsG0480023375.01.T01:CDS |
| CAGGGATAACGGAGGCGGGT+GGG | 0.551178 | 4:+84335179 | MsG0480023375.01.T01:CDS |
| GGGTGAACTCTGATTCATCA+TGG | 0.556267 | 4:+84335354 | MsG0480023375.01.T01:exon |
| GCAGGGATAACGGAGGCGGG+TGG | 0.556957 | 4:+84335178 | MsG0480023375.01.T01:CDS |
| CGAGAGTTCTAAGAAAAGCC+AGG | 0.559263 | 4:+84334911 | MsG0480023375.01.T01:CDS |
| GGTGACGGTGGAGTTGGTGA+CGG | 0.559321 | 4:+84335126 | MsG0480023375.01.T01:CDS |
| ACAATCTATGAACATGCTCA+AGG | 0.561369 | 4:-84335526 | None:intergenic |
| GTGTGACTAACTGCGAGCTC+CGG | 0.567817 | 4:+84334643 | MsG0480023375.01.T01:CDS |
| ATTGCAGGGATAACGGAGGC+GGG | 0.570947 | 4:+84335175 | MsG0480023375.01.T01:CDS |
| CATCTCCGGCCGCCTCGCCA+TGG | 0.570988 | 4:+84334944 | MsG0480023375.01.T01:CDS |
| CATGTTCATAGATTGTAAGA+TGG | 0.573227 | 4:+84335533 | MsG0480023375.01.T01:three_prime_UTR |
| TGACGGTGGAGTTGGTGACG+GGG | 0.573283 | 4:+84335128 | MsG0480023375.01.T01:CDS |
| CAGGATTTCGAAATCATCTC+CGG | 0.574628 | 4:+84334930 | MsG0480023375.01.T01:CDS |
| ATTGTAAGATGGGTGGTTAG+CGG | 0.585816 | 4:+84335544 | MsG0480023375.01.T01:three_prime_UTR |
| AGCGACGGTGACGGTGGAGT+TGG | 0.587633 | 4:+84335120 | MsG0480023375.01.T01:CDS |
| TGATTCATCATGGTTTGATG+AGG | 0.593825 | 4:+84335364 | MsG0480023375.01.T01:exon |
| CTCGATATATTCGGAAAGAG+TGG | 0.596447 | 4:-84334892 | None:intergenic |
| TGTGAAGATTCGATCCACTC+TGG | 0.602920 | 4:-84335260 | None:intergenic |
| TTCATAGATTGTAAGATGGG+TGG | 0.607672 | 4:+84335537 | MsG0480023375.01.T01:three_prime_UTR |
| CAATCTATGAACATGCTCAA+GGG | 0.610585 | 4:-84335525 | None:intergenic |
| GAAGAAGGAGGACACGTCAT+CGG | 0.616933 | 4:-84334868 | None:intergenic |
| GGAAAGAGTGGCGAAGAAGG+AGG | 0.623174 | 4:-84334880 | None:intergenic |
| GGTGTTTGCAGCGACGGTGA+CGG | 0.625726 | 4:+84335111 | MsG0480023375.01.T01:CDS |
| CTCAAGTGCTCGTACCAGAG+TGG | 0.631041 | 4:+84335246 | MsG0480023375.01.T01:CDS |
| TTGTTCTATGATGATAGCGA+GGG | 0.632266 | 4:+84335334 | MsG0480023375.01.T01:CDS |
| TTTGTTCTATGATGATAGCG+AGG | 0.632796 | 4:+84335333 | MsG0480023375.01.T01:CDS |
| TCAGGAAAATGGATATTGCA+GGG | 0.643208 | 4:+84335161 | MsG0480023375.01.T01:CDS |
| CAAACATCGTTCTACAACCG+CGG | 0.645183 | 4:+84334766 | MsG0480023375.01.T01:CDS |
| GTTTGCAGCGACGGTGACGG+TGG | 0.675734 | 4:+84335114 | MsG0480023375.01.T01:CDS |
| CCCAAACCGAGTGAACCAGA+AGG | 0.690718 | 4:+84334735 | MsG0480023375.01.T01:CDS |
| GGATATTGCAGGGATAACGG+AGG | 0.721943 | 4:+84335171 | MsG0480023375.01.T01:CDS |
| GATCTGAGAGTGCATAGCCG+CGG | 0.723172 | 4:-84334783 | None:intergenic |
| TCATACGGTTCCGATCCAGT+CGG | 0.759723 | 4:+84334804 | MsG0480023375.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATTATTCAAATTTAAAG+TGG | + | Chr4:84335597-84335616 | MsG0480023375.01.T01:three_prime_UTR | 15.0% |
| !!! | ATTAATACTATGACTTTTTT+TGG | + | Chr4:84334504-84334523 | MsG0480023375.01.T01:exon | 15.0% |
| !! | CATTATTCTCAGTTTATTAT+TGG | + | Chr4:84335012-84335031 | MsG0480023375.01.T01:intron | 20.0% |
| !! | TTCCTCTAATATAGTATATA+TGG | - | Chr4:84335055-84335074 | None:intergenic | 20.0% |
| ! | AATATAGTATATATGGACAC+AGG | - | Chr4:84335048-84335067 | None:intergenic | 25.0% |
| ! | ATGTTCATAGATTGTAAGAT+GGG | + | Chr4:84335534-84335553 | MsG0480023375.01.T01:three_prime_UTR | 25.0% |
| ! | GTCCATATATACTATATTAG+AGG | + | Chr4:84335050-84335069 | MsG0480023375.01.T01:intron | 25.0% |
| !! | ATGTAACTGATTTCATTTAG+TGG | + | Chr4:84335633-84335652 | MsG0480023375.01.T01:three_prime_UTR | 25.0% |
| !! | CAAACAAACTGATTCTTTAA+TGG | + | Chr4:84334608-84334627 | MsG0480023375.01.T01:CDS | 25.0% |
| !!! | ATTGTTGCTTTTTATTGATG+TGG | + | Chr4:84335078-84335097 | MsG0480023375.01.T01:intron | 25.0% |
| ATCAATTAGCGAATCAATGA+AGG | - | Chr4:84335299-84335318 | None:intergenic | 30.0% | |
| CATGTTCATAGATTGTAAGA+TGG | + | Chr4:84335533-84335552 | MsG0480023375.01.T01:three_prime_UTR | 30.0% | |
| CTAATTGATCAAATCGTTGA+CGG | + | Chr4:84335310-84335329 | MsG0480023375.01.T01:CDS | 30.0% | |
| CTTAGAACTCTCGATATATT+CGG | - | Chr4:84334904-84334923 | None:intergenic | 30.0% | |
| ! | AAAGAATCAGTTTGTTTGTG+AGG | - | Chr4:84334606-84334625 | None:intergenic | 30.0% |
| ! | AAGAATCAGTTTGTTTGTGA+GGG | - | Chr4:84334605-84334624 | None:intergenic | 30.0% |
| AATGGATATTGCAGGGATAA+CGG | + | Chr4:84335168-84335187 | MsG0480023375.01.T01:CDS | 35.0% | |
| ACAATCTATGAACATGCTCA+AGG | - | Chr4:84335529-84335548 | None:intergenic | 35.0% | |
| CAATCTATGAACATGCTCAA+GGG | - | Chr4:84335528-84335547 | None:intergenic | 35.0% | |
| CTTGCATGTCTTCTTCTTTA+CGG | - | Chr4:84334845-84334864 | None:intergenic | 35.0% | |
| GATCACATGTGTTAGTGTTA+GGG | - | Chr4:84334978-84334997 | None:intergenic | 35.0% | |
| TCAGGAAAATGGATATTGCA+GGG | + | Chr4:84335161-84335180 | MsG0480023375.01.T01:CDS | 35.0% | |
| TGATCACATGTGTTAGTGTT+AGG | - | Chr4:84334979-84334998 | None:intergenic | 35.0% | |
| TGATTCATCATGGTTTGATG+AGG | + | Chr4:84335364-84335383 | MsG0480023375.01.T01:exon | 35.0% | |
| TTCAGGAAAATGGATATTGC+AGG | + | Chr4:84335160-84335179 | MsG0480023375.01.T01:CDS | 35.0% | |
| TTCATAGATTGTAAGATGGG+TGG | + | Chr4:84335537-84335556 | MsG0480023375.01.T01:three_prime_UTR | 35.0% | |
| TTCTTTACGGGTCTTGATTA+TGG | - | Chr4:84334832-84334851 | None:intergenic | 35.0% | |
| TTGCATGTCTTCTTCTTTAC+GGG | - | Chr4:84334844-84334863 | None:intergenic | 35.0% | |
| ! | AAAGTTTGAGACTTGAGAAG+TGG | - | Chr4:84334582-84334601 | None:intergenic | 35.0% |
| ! | CGCGAATTTAGTATTGAACT+TGG | + | Chr4:84335489-84335508 | MsG0480023375.01.T01:three_prime_UTR | 35.0% |
| ! | TTGTTCTATGATGATAGCGA+GGG | + | Chr4:84335334-84335353 | MsG0480023375.01.T01:CDS | 35.0% |
| ! | TTTGTTCTATGATGATAGCG+AGG | + | Chr4:84335333-84335352 | MsG0480023375.01.T01:CDS | 35.0% |
| !!! | GTTGCTTTTTATTGATGTGG+TGG | + | Chr4:84335081-84335100 | MsG0480023375.01.T01:intron | 35.0% |
| AATGAACGAACGAACGTTGA+AGG | - | Chr4:84334540-84334559 | None:intergenic | 40.0% | |
| ACTTGAGAAGTGGTAGTTGT+AGG | - | Chr4:84334572-84334591 | None:intergenic | 40.0% | |
| ATTGTAAGATGGGTGGTTAG+CGG | + | Chr4:84335544-84335563 | MsG0480023375.01.T01:three_prime_UTR | 40.0% | |
| CAGGATTTCGAAATCATCTC+CGG | + | Chr4:84334930-84334949 | MsG0480023375.01.T01:CDS | 40.0% | |
| CTATGCACTCTCAGATCATA+CGG | + | Chr4:84334789-84334808 | MsG0480023375.01.T01:CDS | 40.0% | |
| CTCGATATATTCGGAAAGAG+TGG | - | Chr4:84334895-84334914 | None:intergenic | 40.0% | |
| CTTGAGAAGTGGTAGTTGTA+GGG | - | Chr4:84334571-84334590 | None:intergenic | 40.0% | |
| ! | GAACGAGACGATGATACTTT+TGG | - | Chr4:84334672-84334691 | None:intergenic | 40.0% |
| !! | GAATTCGGTGTTCAGGAAAA+TGG | + | Chr4:84335150-84335169 | MsG0480023375.01.T01:CDS | 40.0% |
| !! | TTGGTGACGGAAAATTGAAC+CGG | - | Chr4:84334714-84334733 | None:intergenic | 40.0% |
| !!! | GTGTTAGGGTTTTGTTACCA+TGG | - | Chr4:84334964-84334983 | None:intergenic | 40.0% |
| CAAACATCGTTCTACAACCG+CGG | + | Chr4:84334766-84334785 | MsG0480023375.01.T01:CDS | 45.0% | |
| CGGAGATGATTTCGAAATCC+TGG | - | Chr4:84334932-84334951 | None:intergenic | 45.0% | |
| GGGTGAACTCTGATTCATCA+TGG | + | Chr4:84335354-84335373 | MsG0480023375.01.T01:exon | 45.0% | |
| TGTGAAGATTCGATCCACTC+TGG | - | Chr4:84335263-84335282 | None:intergenic | 45.0% | |
| TTGTTTGGGTGCGGTTACTA+TGG | + | Chr4:84335204-84335223 | MsG0480023375.01.T01:CDS | 45.0% | |
| ! | CGAGACGATGATACTTTTGG+TGG | - | Chr4:84334669-84334688 | None:intergenic | 45.0% |
| ! | TATTGATGTGGTGGTGCAGA+TGG | + | Chr4:84335090-84335109 | MsG0480023375.01.T01:intron | 45.0% |
| !! | ACGATGATACTTTTGGTGGC+CGG | - | Chr4:84334665-84334684 | None:intergenic | 45.0% |
| !! | CGAGAGTTCTAAGAAAAGCC+AGG | + | Chr4:84334911-84334930 | MsG0480023375.01.T01:CDS | 45.0% |
| ACGGAAAATTGAACCGGACC+AGG | - | Chr4:84334708-84334727 | None:intergenic | 50.0% | |
| ATGTTTGTGTTCGCGCCTTC+TGG | - | Chr4:84334753-84334772 | None:intergenic | 50.0% | |
| CTATGGCGGCAATGTTTGCT+TGG | + | Chr4:84335221-84335240 | MsG0480023375.01.T01:CDS | 50.0% | |
| GAAGAAGGAGGACACGTCAT+CGG | - | Chr4:84334871-84334890 | None:intergenic | 50.0% | |
| TCATACGGTTCCGATCCAGT+CGG | + | Chr4:84334804-84334823 | MsG0480023375.01.T01:CDS | 50.0% | |
| TTCGGAAAGAGTGGCGAAGA+AGG | - | Chr4:84334886-84334905 | None:intergenic | 50.0% | |
| TTTGGGTGCGGTTACTATGG+CGG | + | Chr4:84335207-84335226 | MsG0480023375.01.T01:CDS | 50.0% | |
| ! | GGATATTGCAGGGATAACGG+AGG | + | Chr4:84335171-84335190 | MsG0480023375.01.T01:CDS | 50.0% |
| ! | TGAACCGGACCAGGTTTTCT+GGG | - | Chr4:84334699-84334718 | None:intergenic | 50.0% |
| ! | TTGAACCGGACCAGGTTTTC+TGG | - | Chr4:84334700-84334719 | None:intergenic | 50.0% |
| !! | ACTCGGTTTGGGTTTGGTGA+CGG | - | Chr4:84334727-84334746 | None:intergenic | 50.0% |
| !! | CCTTCTGGTTCACTCGGTTT+GGG | - | Chr4:84334738-84334757 | None:intergenic | 50.0% |
| !! | GTTTTGTTACCATGGCGAGG+CGG | - | Chr4:84334956-84334975 | None:intergenic | 50.0% |
| !! | TATTGCAGGGATAACGGAGG+CGG | + | Chr4:84335174-84335193 | MsG0480023375.01.T01:CDS | 50.0% |
| !! | TGGTTCACTCGGTTTGGGTT+TGG | - | Chr4:84334733-84334752 | None:intergenic | 50.0% |
| !!! | AGGGTTTTGTTACCATGGCG+AGG | - | Chr4:84334959-84334978 | None:intergenic | 50.0% |
| CCCAAACCGAGTGAACCAGA+AGG | + | Chr4:84334735-84334754 | MsG0480023375.01.T01:CDS | 55.0% | |
| CTCAAGTGCTCGTACCAGAG+TGG | + | Chr4:84335246-84335265 | MsG0480023375.01.T01:CDS | 55.0% | |
| GCAGATGGTGTTTGCAGCGA+CGG | + | Chr4:84335105-84335124 | MsG0480023375.01.T01:intron | 55.0% | |
| GGAAAGAGTGGCGAAGAAGG+AGG | - | Chr4:84334883-84334902 | None:intergenic | 55.0% | |
| GTGTGACTAACTGCGAGCTC+CGG | + | Chr4:84334643-84334662 | MsG0480023375.01.T01:CDS | 55.0% | |
| ! | GAACCGGACCAGGTTTTCTG+GGG | - | Chr4:84334698-84334717 | None:intergenic | 55.0% |
| ! | GAGGCGGGTGGGATTTGTTT+GGG | + | Chr4:84335190-84335209 | MsG0480023375.01.T01:CDS | 55.0% |
| ! | GATCTGAGAGTGCATAGCCG+CGG | - | Chr4:84334786-84334805 | None:intergenic | 55.0% |
| ! | GGGTGGGATTTGTTTGGGTG+CGG | + | Chr4:84335195-84335214 | MsG0480023375.01.T01:CDS | 55.0% |
| !! | ATTGCAGGGATAACGGAGGC+GGG | + | Chr4:84335175-84335194 | MsG0480023375.01.T01:CDS | 55.0% |
| !! | GATTATGGCGCCGACTGGAT+CGG | - | Chr4:84334817-84334836 | None:intergenic | 55.0% |
| !! | GCCTTCTGGTTCACTCGGTT+TGG | - | Chr4:84334739-84334758 | None:intergenic | 55.0% |
| !! | GGAGTTGGTGACGGGGAATT+CGG | + | Chr4:84335135-84335154 | MsG0480023375.01.T01:CDS | 55.0% |
| !! | GTCTTGATTATGGCGCCGAC+TGG | - | Chr4:84334822-84334841 | None:intergenic | 55.0% |
| !! | TGACGGGGAATTCGGTGTTC+AGG | + | Chr4:84335143-84335162 | MsG0480023375.01.T01:CDS | 55.0% |
| !! | TTCGCGCCTTCTGGTTCACT+CGG | - | Chr4:84334744-84334763 | None:intergenic | 55.0% |
| GGTGTTTGCAGCGACGGTGA+CGG | + | Chr4:84335111-84335130 | MsG0480023375.01.T01:CDS | 60.0% | |
| ! | GGAGGCGGGTGGGATTTGTT+TGG | + | Chr4:84335189-84335208 | MsG0480023375.01.T01:CDS | 60.0% |
| !! | GGTGACGGTGGAGTTGGTGA+CGG | + | Chr4:84335126-84335145 | MsG0480023375.01.T01:CDS | 60.0% |
| !! | GTGACGGTGGAGTTGGTGAC+GGG | + | Chr4:84335127-84335146 | MsG0480023375.01.T01:CDS | 60.0% |
| !! | TGACGGTGGAGTTGGTGACG+GGG | + | Chr4:84335128-84335147 | MsG0480023375.01.T01:CDS | 60.0% |
| CCGCCCCAGAAAACCTGGTC+CGG | + | Chr4:84334692-84334711 | MsG0480023375.01.T01:CDS | 65.0% | |
| CGTTCCCGCCCCAGAAAACC+TGG | + | Chr4:84334687-84334706 | MsG0480023375.01.T01:CDS | 65.0% | |
| TGTTACCATGGCGAGGCGGC+CGG | - | Chr4:84334952-84334971 | None:intergenic | 65.0% | |
| ! | AGCGACGGTGACGGTGGAGT+TGG | + | Chr4:84335120-84335139 | MsG0480023375.01.T01:CDS | 65.0% |
| ! | GTTTGCAGCGACGGTGACGG+TGG | + | Chr4:84335114-84335133 | MsG0480023375.01.T01:CDS | 65.0% |
| !! | CAGGGATAACGGAGGCGGGT+GGG | + | Chr4:84335179-84335198 | MsG0480023375.01.T01:CDS | 65.0% |
| !! | CCGGACCAGGTTTTCTGGGG+CGG | - | Chr4:84334695-84334714 | None:intergenic | 65.0% |
| !!! | CGGACCAGGTTTTCTGGGGC+GGG | - | Chr4:84334694-84334713 | None:intergenic | 65.0% |
| !! | GCAGGGATAACGGAGGCGGG+TGG | + | Chr4:84335178-84335197 | MsG0480023375.01.T01:CDS | 70.0% |
| CATCTCCGGCCGCCTCGCCA+TGG | + | Chr4:84334944-84334963 | MsG0480023375.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 84334498 | 84335674 | 84334498 | ID=MsG0480023375.01;Name=MsG0480023375.01 |
| Chr4 | mRNA | 84334498 | 84335674 | 84334498 | ID=MsG0480023375.01.T01;Parent=MsG0480023375.01;Name=MsG0480023375.01.T01;_AED=0.18;_eAED=0.18;_QI=15|1|1|1|1|1|2|308|236 |
| Chr4 | exon | 84334498 | 84334965 | 84334498 | ID=MsG0480023375.01.T01:exon:6118;Parent=MsG0480023375.01.T01 |
| Chr4 | exon | 84335109 | 84335674 | 84335109 | ID=MsG0480023375.01.T01:exon:6119;Parent=MsG0480023375.01.T01 |
| Chr4 | five_prime_UTR | 84334498 | 84334512 | 84334498 | ID=MsG0480023375.01.T01:five_prime_utr;Parent=MsG0480023375.01.T01 |
| Chr4 | CDS | 84334513 | 84334965 | 84334513 | ID=MsG0480023375.01.T01:cds;Parent=MsG0480023375.01.T01 |
| Chr4 | CDS | 84335109 | 84335366 | 84335109 | ID=MsG0480023375.01.T01:cds;Parent=MsG0480023375.01.T01 |
| Chr4 | three_prime_UTR | 84335367 | 84335674 | 84335367 | ID=MsG0480023375.01.T01:three_prime_utr;Parent=MsG0480023375.01.T01 |
| Gene Sequence |
| Protein sequence |
