Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005338.01.T01 | KEH43619.1 | 97.59 | 83 | 2 | 0 | 65 | 147 | 41 | 123 | 8.77E-48 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005338.01.T01 | A0A072VNL7 | 97.590 | 83 | 2 | 0 | 65 | 147 | 41 | 123 | 4.19e-48 | 163 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048887.01 | MsG0180005338.01 | 0.810654 | 1.035142e-50 | 6.275843e-48 |
| MsG0080049023.01 | MsG0180005338.01 | 0.830260 | 3.245936e-55 | 3.402420e-52 |
| MsG0180000466.01 | MsG0180005338.01 | -0.832229 | 1.064754e-55 | 1.182698e-52 |
| MsG0180000490.01 | MsG0180005338.01 | 0.813621 | 2.333189e-51 | 1.531277e-48 |
| MsG0180000719.01 | MsG0180005338.01 | 0.812050 | 5.153212e-51 | 3.242120e-48 |
| MsG0180000976.01 | MsG0180005338.01 | 0.823297 | 1.493911e-53 | 1.281185e-50 |
| MsG0180001523.01 | MsG0180005338.01 | 0.801449 | 8.955725e-49 | 4.278190e-46 |
| MsG0180001615.01 | MsG0180005338.01 | 0.835074 | 2.073980e-56 | 2.508248e-53 |
| MsG0180002891.01 | MsG0180005338.01 | 0.817413 | 3.340553e-52 | 2.431206e-49 |
| MsG0180003351.01 | MsG0180005338.01 | 0.804644 | 1.956694e-49 | 1.014245e-46 |
| MsG0180003405.01 | MsG0180005338.01 | 0.811644 | 6.314765e-51 | 3.929942e-48 |
| MsG0180003503.01 | MsG0180005338.01 | 0.809776 | 1.601097e-50 | 9.485748e-48 |
| MsG0180003617.01 | MsG0180005338.01 | 0.840264 | 9.655282e-58 | 1.367909e-54 |
| MsG0180004662.01 | MsG0180005338.01 | 0.825795 | 3.856915e-54 | 3.551702e-51 |
| MsG0180004737.01 | MsG0180005338.01 | 0.810976 | 8.818114e-51 | 5.392959e-48 |
| MsG0180004787.01 | MsG0180005338.01 | 0.854402 | 1.260725e-61 | 2.812147e-58 |
| MsG0180005338.01 | MsG0180005555.01 | 0.808114 | 3.630037e-50 | 2.057983e-47 |
| MsG0180005338.01 | MsG0180005556.01 | 0.810482 | 1.127503e-50 | 6.804349e-48 |
| MsG0180005338.01 | MsG0180005558.01 | 0.801106 | 1.052722e-48 | 4.985800e-46 |
| MsG0180005338.01 | MsG0180005672.01 | 0.800087 | 1.698638e-48 | 7.839249e-46 |
| MsG0180005338.01 | MsG0180005767.01 | 0.856729 | 2.642338e-62 | 6.366481e-59 |
| MsG0180005338.01 | MsG0180005898.01 | 0.847933 | 8.451512e-60 | 1.526056e-56 |
| MsG0180005338.01 | MsG0180006063.01 | 0.817643 | 2.965037e-52 | 2.171398e-49 |
| MsG0180005338.01 | MsG0180006076.01 | 0.814621 | 1.403175e-51 | 9.461859e-49 |
| MsG0180005338.01 | MsG0180006183.01 | -0.810800 | 9.625352e-51 | 5.858404e-48 |
| MsG0180005338.01 | MsG0280006533.01 | 0.803881 | 2.821299e-49 | 1.434046e-46 |
| MsG0180005338.01 | MsG0280007423.01 | 0.827032 | 1.956926e-54 | 1.866896e-51 |
| MsG0180005338.01 | MsG0280007511.01 | 0.805986 | 1.024161e-49 | 5.495424e-47 |
| MsG0180005338.01 | MsG0280008139.01 | 0.805822 | 1.108664e-49 | 5.923766e-47 |
| MsG0180005338.01 | MsG0280009287.01 | 0.803211 | 3.883848e-49 | 1.940386e-46 |
| MsG0180005338.01 | MsG0280010253.01 | 0.808426 | 3.115366e-50 | 1.780775e-47 |
| MsG0180005338.01 | MsG0280010455.01 | 0.825807 | 3.831618e-54 | 3.529593e-51 |
| MsG0180005338.01 | MsG0280010854.01 | 0.809449 | 1.882068e-50 | 1.105319e-47 |
| MsG0180005338.01 | MsG0280011020.01 | 0.819788 | 9.663092e-53 | 7.509277e-50 |
| MsG0180005338.01 | MsG0280011036.01 | 0.860837 | 1.563109e-63 | 4.331507e-60 |
| MsG0180005338.01 | MsG0280011169.01 | 0.813359 | 2.664369e-51 | 1.736266e-48 |
| MsG0180005338.01 | MsG0280011207.01 | 0.805956 | 1.039075e-49 | 5.571056e-47 |
| MsG0180005338.01 | MsG0280011281.01 | 0.808181 | 3.513214e-50 | 1.995341e-47 |
| MsG0180005338.01 | MsG0280011362.01 | 0.818230 | 2.184962e-52 | 1.626059e-49 |
| MsG0180005338.01 | MsG0380012931.01 | 0.818594 | 1.806483e-52 | 1.358018e-49 |
| MsG0180005338.01 | MsG0380013063.01 | 0.820298 | 7.383665e-53 | 5.819692e-50 |
| MsG0180005338.01 | MsG0380014646.01 | 0.821289 | 4.370744e-53 | 3.541042e-50 |
| MsG0180005338.01 | MsG0380014735.01 | 0.808379 | 3.187869e-50 | 1.820017e-47 |
| MsG0180005338.01 | MsG0380015393.01 | -0.800212 | 1.602295e-48 | 7.418017e-46 |
| MsG0180005338.01 | MsG0380015828.01 | 0.842817 | 2.050971e-58 | 3.146587e-55 |
| MsG0180005338.01 | MsG0380016065.01 | 0.840749 | 7.206607e-58 | 1.036508e-54 |
| MsG0180005338.01 | MsG0380016066.01 | 0.877917 | 4.275153e-69 | 2.189081e-65 |
| MsG0180005338.01 | MsG0380016151.01 | 0.819054 | 1.420302e-52 | 1.081422e-49 |
| MsG0180005338.01 | MsG0380016861.01 | 0.858812 | 6.370619e-63 | 1.646676e-59 |
| MsG0180005338.01 | MsG0380016997.01 | 0.832792 | 7.724098e-56 | 8.724667e-53 |
| MsG0180005338.01 | MsG0380017030.01 | -0.800755 | 1.242018e-48 | 5.829680e-46 |
| MsG0180005338.01 | MsG0380017156.01 | -0.814866 | 1.238578e-51 | 8.406900e-49 |
| MsG0180005338.01 | MsG0380017353.01 | 0.813632 | 2.319928e-51 | 1.523019e-48 |
| MsG0180005338.01 | MsG0380017666.01 | -0.802538 | 5.351192e-49 | 2.627935e-46 |
| MsG0180005338.01 | MsG0380017918.01 | 0.828899 | 6.956847e-55 | 7.007691e-52 |
| MsG0180005338.01 | MsG0480020797.01 | -0.808587 | 2.878752e-50 | 1.652361e-47 |
| MsG0180005338.01 | MsG0480021151.01 | 0.835885 | 1.293222e-56 | 1.602727e-53 |
| MsG0180005338.01 | MsG0480021892.01 | 0.814234 | 1.709060e-51 | 1.140461e-48 |
| MsG0180005338.01 | MsG0480022002.01 | 0.814791 | 1.287037e-51 | 8.718495e-49 |
| MsG0180005338.01 | MsG0480022241.01 | 0.807762 | 4.313774e-50 | 2.423016e-47 |
| MsG0180005338.01 | MsG0480022664.01 | 0.805222 | 1.481414e-49 | 7.793925e-47 |
| MsG0180005338.01 | MsG0480022968.01 | -0.801634 | 8.208741e-49 | 3.939571e-46 |
| MsG0180005338.01 | MsG0480023242.01 | 0.812379 | 4.367315e-51 | 2.772444e-48 |
| MsG0180005338.01 | MsG0480023244.01 | 0.810981 | 8.795987e-51 | 5.380186e-48 |
| MsG0180005338.01 | MsG0480023375.01 | 0.866918 | 2.006239e-65 | 6.877493e-62 |
| MsG0180005338.01 | MsG0480023386.01 | 0.833521 | 5.083313e-56 | 5.868925e-53 |
| MsG0180005338.01 | MsG0480023466.01 | 0.800206 | 1.607059e-48 | 7.438835e-46 |
| MsG0180005338.01 | MsG0480023851.01 | 0.800343 | 1.506542e-48 | 6.998261e-46 |
| MsG0180005338.01 | MsG0580024201.01 | 0.826430 | 2.724571e-54 | 2.554674e-51 |
| MsG0180005338.01 | MsG0580024471.01 | 0.813900 | 2.025399e-51 | 1.339338e-48 |
| MsG0180005338.01 | MsG0580024538.01 | 0.842102 | 3.173622e-58 | 4.761634e-55 |
| MsG0180005338.01 | MsG0580024763.01 | 0.803296 | 3.730491e-49 | 1.867759e-46 |
| MsG0180005338.01 | MsG0580024768.01 | 0.803431 | 3.498245e-49 | 1.757607e-46 |
| MsG0180005338.01 | MsG0580025153.01 | 0.814135 | 1.797707e-51 | 1.196379e-48 |
| MsG0180005338.01 | MsG0580027276.01 | 0.810661 | 1.031594e-50 | 6.255579e-48 |
| MsG0180005338.01 | MsG0580028013.01 | 0.834379 | 3.100582e-56 | 3.673230e-53 |
| MsG0180005338.01 | MsG0580028159.01 | 0.824740 | 6.852694e-54 | 6.123485e-51 |
| MsG0180005338.01 | MsG0580028397.01 | 0.835191 | 1.936667e-56 | 2.350890e-53 |
| MsG0180005338.01 | MsG0580028398.01 | 0.835523 | 1.596761e-56 | 1.957504e-53 |
| MsG0180005338.01 | MsG0580028403.01 | 0.831815 | 1.347604e-55 | 1.479021e-52 |
| MsG0180005338.01 | MsG0580029751.01 | 0.801251 | 9.832512e-49 | 4.673636e-46 |
| MsG0180005338.01 | MsG0680030296.01 | -0.807479 | 4.955429e-50 | 2.763025e-47 |
| MsG0180005338.01 | MsG0680032245.01 | 0.801854 | 7.397637e-49 | 3.570338e-46 |
| MsG0180005338.01 | MsG0680032512.01 | 0.842788 | 2.087836e-58 | 3.200162e-55 |
| MsG0180005338.01 | MsG0680035623.01 | 0.804689 | 1.914519e-49 | 9.935757e-47 |
| MsG0180005338.01 | MsG0680035665.01 | 0.836085 | 1.150451e-56 | 1.434573e-53 |
| MsG0180005338.01 | MsG0780036060.01 | -0.811725 | 6.065141e-51 | 3.782919e-48 |
| MsG0180005338.01 | MsG0780036846.01 | 0.838382 | 2.972227e-57 | 3.974167e-54 |
| MsG0180005338.01 | MsG0780037458.01 | 0.802582 | 5.240361e-49 | 2.576351e-46 |
| MsG0180005338.01 | MsG0780038914.01 | -0.804556 | 2.040970e-49 | 1.055527e-46 |
| MsG0180005338.01 | MsG0780038919.01 | -0.821686 | 3.537846e-53 | 2.898454e-50 |
| MsG0180005338.01 | MsG0780039986.01 | 0.802351 | 5.847762e-49 | 2.858243e-46 |
| MsG0180005338.01 | MsG0780040154.01 | 0.849079 | 4.070553e-60 | 7.628009e-57 |
| MsG0180005338.01 | MsG0780040155.01 | 0.819991 | 8.682146e-53 | 6.785283e-50 |
| MsG0180005338.01 | MsG0780040167.01 | 0.810167 | 1.318515e-50 | 7.891464e-48 |
| MsG0180005338.01 | MsG0780040175.01 | 0.804509 | 2.088173e-49 | 1.078588e-46 |
| MsG0180005338.01 | MsG0780041002.01 | 0.816977 | 4.187582e-52 | 3.011534e-49 |
| MsG0180005338.01 | MsG0780041129.01 | 0.811958 | 5.396523e-51 | 3.386801e-48 |
| MsG0180005338.01 | MsG0780041436.01 | -0.803065 | 4.163735e-49 | 2.072342e-46 |
| MsG0180005338.01 | MsG0780041531.01 | 0.804678 | 1.925326e-49 | 9.988655e-47 |
| MsG0180005338.01 | MsG0880042256.01 | 0.801555 | 8.521787e-49 | 4.081614e-46 |
| MsG0180005338.01 | MsG0880042690.01 | 0.812067 | 5.107804e-51 | 3.215149e-48 |
| MsG0180005338.01 | MsG0880043056.01 | 0.821263 | 4.431485e-53 | 3.587525e-50 |
| MsG0180005338.01 | MsG0880043495.01 | -0.809118 | 2.215782e-50 | 1.289928e-47 |
| MsG0180005338.01 | MsG0880044317.01 | 0.863410 | 2.539120e-64 | 7.689610e-61 |
| MsG0180005338.01 | MsG0880044318.01 | 0.887848 | 9.951352e-73 | 7.522576e-69 |
| MsG0180005338.01 | MsG0880044453.01 | 0.840032 | 1.110230e-57 | 1.561894e-54 |
| MsG0180005338.01 | MsG0880044545.01 | 0.808065 | 3.718614e-50 | 2.105429e-47 |
| MsG0180005338.01 | MsG0880044548.01 | 0.800082 | 1.703151e-48 | 7.858981e-46 |
| MsG0180005338.01 | MsG0880045394.01 | 0.877658 | 5.267269e-69 | 2.669953e-65 |
| MsG0180005338.01 | MsG0880045725.01 | -0.817268 | 3.601103e-52 | 2.610238e-49 |
| MsG0180005338.01 | MsG0880045761.01 | 0.871587 | 6.099104e-67 | 2.473890e-63 |
| MsG0180005338.01 | MsG0880046010.01 | 0.816960 | 4.224561e-52 | 3.036814e-49 |
| MsG0180005338.01 | MsG0880046160.01 | 0.834931 | 2.252818e-56 | 2.713281e-53 |
| MsG0180005338.01 | MsG0880046969.01 | 0.800657 | 1.300436e-48 | 6.089037e-46 |
| MsG0180005338.01 | MsG0880047090.01 | -0.821244 | 4.475221e-53 | 3.621211e-50 |
| MsG0180005338.01 | MsG0880047207.01 | 0.826959 | 2.037246e-54 | 1.939495e-51 |
| MsG0180005338.01 | MsG0880047660.01 | 0.818366 | 2.034963e-52 | 1.520331e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005338.01.T01 | MTR_1g097430 | 97.590 | 83 | 2 | 0 | 65 | 147 | 41 | 123 | 1.06e-51 | 163 |
| MsG0180005338.01.T01 | MTR_1g097430 | 97.590 | 83 | 2 | 0 | 65 | 147 | 85 | 167 | 3.71e-51 | 163 |
| MsG0180005338.01.T01 | MTR_1g097430 | 97.590 | 83 | 2 | 0 | 65 | 147 | 85 | 167 | 6.53e-51 | 163 |
| MsG0180005338.01.T01 | MTR_1g097430 | 88.043 | 92 | 2 | 1 | 65 | 147 | 85 | 176 | 4.47e-48 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005338.01.T01 | AT1G22750 | 54.217 | 83 | 38 | 0 | 65 | 147 | 87 | 169 | 5.36e-22 | 88.2 |
| MsG0180005338.01.T01 | AT1G22750 | 54.217 | 83 | 38 | 0 | 65 | 147 | 87 | 169 | 5.79e-22 | 88.2 |
| MsG0180005338.01.T01 | AT1G22750 | 54.217 | 83 | 38 | 0 | 65 | 147 | 87 | 169 | 6.51e-22 | 88.2 |
| MsG0180005338.01.T01 | AT1G22750 | 54.217 | 83 | 38 | 0 | 65 | 147 | 87 | 169 | 7.12e-22 | 88.2 |
Find 18 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAAAATATGATGGAAAAT+TGG | 0.236549 | 1:+90518081 | None:intergenic |
| ATTGGGTCAGCTCGATTCTT+TGG | 0.271091 | 1:+90518544 | MsG0180005338.01.T01:CDS |
| TCTTGTCTAGGATCGTTTAA+AGG | 0.271904 | 1:+90519333 | MsG0180005338.01.T01:intron |
| TTATTTACAAGGAAGCAAAT+TGG | 0.370778 | 1:+90518526 | MsG0180005338.01.T01:CDS |
| TATTTACAAGGAAGCAAATT+GGG | 0.429007 | 1:+90518527 | MsG0180005338.01.T01:CDS |
| CAACACCCAAAATGCTGAAA+AGG | 0.432749 | 1:-90519779 | None:intergenic |
| TGTTGTCATGCTTGGAACCT+TGG | 0.450047 | 1:+90519797 | MsG0180005338.01.T01:CDS |
| CCAGGCCTGGGTTATTTACA+AGG | 0.474179 | 1:+90518515 | MsG0180005338.01.T01:intron |
| TGATGGAAAATTGGCTTAGG+TGG | 0.488862 | 1:+90518090 | MsG0180005338.01.T01:CDS |
| GTATACACTCTTGTCACTGA+TGG | 0.490061 | 1:+90519819 | MsG0180005338.01.T01:CDS |
| ATATGATGGAAAATTGGCTT+AGG | 0.498442 | 1:+90518087 | None:intergenic |
| CGCAATAGAACATAATACAT+AGG | 0.530191 | 1:-90519478 | None:intergenic |
| TGCTTCCTTGTAAATAACCC+AGG | 0.554220 | 1:-90518520 | None:intergenic |
| GCAATAGAACATAATACATA+GGG | 0.563470 | 1:-90519477 | None:intergenic |
| GTCAATAGCTCTGTACGGAA+AGG | 0.603621 | 1:-90519846 | None:intergenic |
| ACGGAGTCAATAGCTCTGTA+CGG | 0.618927 | 1:-90519851 | None:intergenic |
| GTCATCACAAGAGTCTTCAC+AGG | 0.620790 | 1:+90519453 | MsG0180005338.01.T01:CDS |
| AGTGACAAGAGTGTATACCA+AGG | 0.744399 | 1:-90519814 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTAATTTTAAATAT+AGG | + | Chr1:90518875-90518894 | MsG0180005338.01.T01:intron | 0.0% |
| !! | TAATGTTCCATAAATATATT+TGG | + | Chr1:90519575-90519594 | MsG0180005338.01.T01:intron | 15.0% |
| !! | TACTTAATTCTTACTTATAT+TGG | + | Chr1:90519100-90519119 | MsG0180005338.01.T01:intron | 15.0% |
| !! | TATAAATTGGAAAATATCAA+AGG | - | Chr1:90518733-90518752 | None:intergenic | 15.0% |
| !! | ACATTAAACATAAAATCATG+TGG | - | Chr1:90519660-90519679 | None:intergenic | 20.0% |
| !! | ATTTAGATAATCCTATTTCA+TGG | + | Chr1:90519617-90519636 | MsG0180005338.01.T01:intron | 20.0% |
| !! | CATAAATATATTTGGAGAAA+AGG | + | Chr1:90519583-90519602 | MsG0180005338.01.T01:intron | 20.0% |
| !! | TAAACATGACTAATGTTTAA+TGG | + | Chr1:90518408-90518427 | MsG0180005338.01.T01:intron | 20.0% |
| !! | TAAATCTTATCTATAATCTG+AGG | + | Chr1:90518664-90518683 | MsG0180005338.01.T01:intron | 20.0% |
| !! | TAGAACAAGGTAATATAAAT+TGG | - | Chr1:90518746-90518765 | None:intergenic | 20.0% |
| !! | TATAGTATGATGATTGAAAT+TGG | - | Chr1:90519255-90519274 | None:intergenic | 20.0% |
| !!! | AAAGTTTTATTTGAGTTACA+AGG | - | Chr1:90518773-90518792 | None:intergenic | 20.0% |
| !!! | ATAATTTTACTTATTGGCTT+TGG | + | Chr1:90518567-90518586 | MsG0180005338.01.T01:CDS | 20.0% |
| !!! | CTTTGGATAATTTTACTTAT+TGG | + | Chr1:90518561-90518580 | MsG0180005338.01.T01:CDS | 20.0% |
| !!! | CTTTTCTCCAAATATATTTA+TGG | - | Chr1:90519585-90519604 | None:intergenic | 20.0% |
| !!! | TAATGTGATGTTTTCTATAT+AGG | + | Chr1:90519706-90519725 | MsG0180005338.01.T01:intron | 20.0% |
| !!! | TGATTGATTTGCATAAAAAA+TGG | + | Chr1:90519022-90519041 | MsG0180005338.01.T01:intron | 20.0% |
| !!! | TTCTTTTTTGGTTTAAATAC+AGG | + | Chr1:90518816-90518835 | MsG0180005338.01.T01:intron | 20.0% |
| ! | AAAGTAGTAAACCATGAAAT+AGG | - | Chr1:90519631-90519650 | None:intergenic | 25.0% |
| ! | AGTCATGTTTAAATGAAAAG+TGG | - | Chr1:90518399-90518418 | None:intergenic | 25.0% |
| ! | ATAAAAATACCACAGAGAAA+TGG | - | Chr1:90519383-90519402 | None:intergenic | 25.0% |
| ! | ATTATTACAAGAGAGACAAA+AGG | - | Chr1:90519158-90519177 | None:intergenic | 25.0% |
| ! | CAAAAATTGCACAACAATAT+AGG | - | Chr1:90519428-90519447 | None:intergenic | 25.0% |
| ! | GCAATAGAACATAATACATA+GGG | - | Chr1:90519480-90519499 | None:intergenic | 25.0% |
| ! | GCATAAAAAATGGTTAATCT+TGG | + | Chr1:90519032-90519051 | MsG0180005338.01.T01:intron | 25.0% |
| ! | GTCATGTTTAAATGAAAAGT+GGG | - | Chr1:90518398-90518417 | None:intergenic | 25.0% |
| ! | TATTTACAAGGAAGCAAATT+GGG | + | Chr1:90518527-90518546 | MsG0180005338.01.T01:CDS | 25.0% |
| ! | TCACATTATATTAGAACTGA+TGG | - | Chr1:90519694-90519713 | None:intergenic | 25.0% |
| ! | TTATTACAAGAGAGACAAAA+GGG | - | Chr1:90519157-90519176 | None:intergenic | 25.0% |
| ! | TTATTTACAAGGAAGCAAAT+TGG | + | Chr1:90518526-90518545 | MsG0180005338.01.T01:CDS | 25.0% |
| ! | TTTAAATATAGGTGCTCTAA+GGG | + | Chr1:90518886-90518905 | MsG0180005338.01.T01:intron | 25.0% |
| !! | TCAATGTGAGCTTTTATAAT+AGG | - | Chr1:90519293-90519312 | None:intergenic | 25.0% |
| !! | TTTTAAATATAGGTGCTCTA+AGG | + | Chr1:90518885-90518904 | MsG0180005338.01.T01:intron | 25.0% |
| !!! | AAACTTTGAAACAAATGTCA+TGG | + | Chr1:90518786-90518805 | MsG0180005338.01.T01:intron | 25.0% |
| !!! | ACAATAGAACACTTTGTTTT+TGG | - | Chr1:90519744-90519763 | None:intergenic | 25.0% |
| !!! | TTTATTTTTCCATTTCTCTG+TGG | + | Chr1:90519371-90519390 | MsG0180005338.01.T01:CDS | 25.0% |
| AGAGAGTAGATTATGTAGTA+AGG | + | Chr1:90518124-90518143 | MsG0180005338.01.T01:intron | 30.0% | |
| CAGATAGATATTGGGTATTA+TGG | + | Chr1:90518848-90518867 | MsG0180005338.01.T01:intron | 30.0% | |
| CGCAATAGAACATAATACAT+AGG | - | Chr1:90519481-90519500 | None:intergenic | 30.0% | |
| CTGAAGTACAGATAGATATT+GGG | + | Chr1:90518840-90518859 | MsG0180005338.01.T01:intron | 30.0% | |
| ! | AAGAATCCTTTTCAGCATTT+TGG | + | Chr1:90519773-90519792 | MsG0180005338.01.T01:CDS | 30.0% |
| ! | AGAATCCTTTTCAGCATTTT+GGG | + | Chr1:90519774-90519793 | MsG0180005338.01.T01:CDS | 30.0% |
| ! | CATGGTTTCGTTTTCTTTTT+TGG | + | Chr1:90518804-90518823 | MsG0180005338.01.T01:intron | 30.0% |
| ! | CTCTTGTAATAATAGCTCTA+CGG | + | Chr1:90519165-90519184 | MsG0180005338.01.T01:intron | 30.0% |
| ! | TCTGAAGTACAGATAGATAT+TGG | + | Chr1:90518839-90518858 | MsG0180005338.01.T01:intron | 30.0% |
| ! | TGATGTTTTCTATATAGGAG+TGG | + | Chr1:90519711-90519730 | MsG0180005338.01.T01:intron | 30.0% |
| ! | TTTTTGTAGACATACTTGTG+TGG | - | Chr1:90519508-90519527 | None:intergenic | 30.0% |
| !!! | TTTTACTTATTGGCTTTGGA+AGG | + | Chr1:90518571-90518590 | MsG0180005338.01.T01:CDS | 30.0% |
| AAGCTCACATTGAAGTTTCT+AGG | + | Chr1:90519300-90519319 | MsG0180005338.01.T01:intron | 35.0% | |
| GTTACAAGGATAGTAGAACA+AGG | - | Chr1:90518759-90518778 | None:intergenic | 35.0% | |
| ! | AGGCATCTCTTTTTAACAAG+AGG | + | Chr1:90518693-90518712 | MsG0180005338.01.T01:intron | 35.0% |
| ! | AGTTTTTGTAGATCTTCTCC+TGG | - | Chr1:90518191-90518210 | None:intergenic | 35.0% |
| ! | TCTATAATCTGAGGTATGAG+AGG | + | Chr1:90518673-90518692 | MsG0180005338.01.T01:intron | 35.0% |
| ! | TCTTGTCTAGGATCGTTTAA+AGG | + | Chr1:90519333-90519352 | MsG0180005338.01.T01:intron | 35.0% |
| AGAGCTGATGAAACTTCAGT+TGG | - | Chr1:90518470-90518489 | None:intergenic | 40.0% | |
| AGTAAGGAGAGTAGATCAGA+TGG | + | Chr1:90518140-90518159 | MsG0180005338.01.T01:intron | 40.0% | |
| CAACACCCAAAATGCTGAAA+AGG | - | Chr1:90519782-90519801 | None:intergenic | 40.0% | |
| CCAATTTCCAAGTGGATACA+GGG | + | Chr1:90518940-90518959 | MsG0180005338.01.T01:intron | 40.0% | |
| CTGACAGAAAGTCACATGTT+TGG | + | Chr1:90519073-90519092 | MsG0180005338.01.T01:intron | 40.0% | |
| CTTATCCCACTATGTAGAGT+CGG | - | Chr1:90518290-90518309 | None:intergenic | 40.0% | |
| GGCTGTATCTTATCTTGTCT+AGG | + | Chr1:90519321-90519340 | MsG0180005338.01.T01:intron | 40.0% | |
| GTATACACTCTTGTCACTGA+TGG | + | Chr1:90519819-90519838 | MsG0180005338.01.T01:CDS | 40.0% | |
| GTTCAGCAGAAGGAAATTGA+CGG | - | Chr1:90518376-90518395 | None:intergenic | 40.0% | |
| TCCAATTTCCAAGTGGATAC+AGG | + | Chr1:90518939-90518958 | MsG0180005338.01.T01:intron | 40.0% | |
| TGCTTCCTTGTAAATAACCC+AGG | - | Chr1:90518523-90518542 | None:intergenic | 40.0% | |
| TGGAAAGAGATTCTGACACA+AGG | - | Chr1:90518450-90518469 | None:intergenic | 40.0% | |
| ! | AGTGACAAGAGTGTATACCA+AGG | - | Chr1:90519817-90519836 | None:intergenic | 40.0% |
| ! | TATATTTGGAGAAAAGGCGC+AGG | + | Chr1:90519589-90519608 | MsG0180005338.01.T01:intron | 40.0% |
| ! | TGATGGAAAATTGGCTTAGG+TGG | + | Chr1:90518090-90518109 | MsG0180005338.01.T01:CDS | 40.0% |
| !! | ATTTTGGGTGTTGTCATGCT+TGG | + | Chr1:90519789-90519808 | MsG0180005338.01.T01:CDS | 40.0% |
| AAGGAGAGTAGATCAGATGG+AGG | + | Chr1:90518143-90518162 | MsG0180005338.01.T01:intron | 45.0% | |
| AGGAGAGTAGATCAGATGGA+GGG | + | Chr1:90518144-90518163 | MsG0180005338.01.T01:intron | 45.0% | |
| ATCAGATCCCTGTATCCACT+TGG | - | Chr1:90518950-90518969 | None:intergenic | 45.0% | |
| ATCCTGTCAGCTTGCACTAT+AGG | - | Chr1:90519229-90519248 | None:intergenic | 45.0% | |
| ATTGGGTCAGCTCGATTCTT+TGG | + | Chr1:90518544-90518563 | MsG0180005338.01.T01:CDS | 45.0% | |
| CCCTGTATCCACTTGGAAAT+TGG | - | Chr1:90518943-90518962 | None:intergenic | 45.0% | |
| GACTCGTTCCAATTTCCAAG+TGG | + | Chr1:90518932-90518951 | MsG0180005338.01.T01:intron | 45.0% | |
| GTCATCACAAGAGTCTTCAC+AGG | + | Chr1:90519453-90519472 | MsG0180005338.01.T01:CDS | 45.0% | |
| TCAAATCATCAGAGAGAGCC+AGG | + | Chr1:90518170-90518189 | MsG0180005338.01.T01:intron | 45.0% | |
| TGTTGTCATGCTTGGAACCT+TGG | + | Chr1:90519797-90519816 | MsG0180005338.01.T01:CDS | 45.0% | |
| ! | ACGGAGTCAATAGCTCTGTA+CGG | - | Chr1:90519854-90519873 | None:intergenic | 45.0% |
| ! | ATGTAGCCGACTCTACATAG+TGG | + | Chr1:90518281-90518300 | MsG0180005338.01.T01:intron | 45.0% |
| ! | CGACTCTACATAGTGGGATA+AGG | + | Chr1:90518288-90518307 | MsG0180005338.01.T01:intron | 45.0% |
| ! | GTCAATAGCTCTGTACGGAA+AGG | - | Chr1:90519849-90519868 | None:intergenic | 45.0% |
| ! | GTTTTTCTGTCACACCAACC+AGG | + | Chr1:90518497-90518516 | MsG0180005338.01.T01:intron | 45.0% |
| ! | TGAAAAGTGGGTTCAGCAGA+AGG | - | Chr1:90518386-90518405 | None:intergenic | 45.0% |
| ! | TGTAGCCGACTCTACATAGT+GGG | + | Chr1:90518282-90518301 | MsG0180005338.01.T01:intron | 45.0% |
| CACCTATAGTGCAAGCTGAC+AGG | + | Chr1:90519224-90519243 | MsG0180005338.01.T01:intron | 50.0% | |
| CCAGGCCTGGGTTATTTACA+AGG | + | Chr1:90518515-90518534 | MsG0180005338.01.T01:intron | 50.0% | |
| CCTTGTAAATAACCCAGGCC+TGG | - | Chr1:90518518-90518537 | None:intergenic | 50.0% | |
| CTATAGGTGCAACAGGTGCT+TGG | - | Chr1:90519213-90519232 | None:intergenic | 50.0% | |
| GCTTGCACTATAGGTGCAAC+AGG | - | Chr1:90519220-90519239 | None:intergenic | 50.0% | |
| GTAAATAACCCAGGCCTGGT+TGG | - | Chr1:90518514-90518533 | None:intergenic | 50.0% | |
| CTGTCACACCAACCAGGCCT+GGG | + | Chr1:90518503-90518522 | MsG0180005338.01.T01:intron | 60.0% | |
| TCTGTCACACCAACCAGGCC+TGG | + | Chr1:90518502-90518521 | MsG0180005338.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 90518089 | 90519875 | 90518089 | ID=MsG0180005338.01;Name=MsG0180005338.01 |
| Chr1 | mRNA | 90518089 | 90519875 | 90518089 | ID=MsG0180005338.01.T01;Parent=MsG0180005338.01;Name=MsG0180005338.01.T01;_AED=0.49;_eAED=0.62;_QI=0|0.33|0.25|1|0.33|0.25|4|0|147 |
| Chr1 | exon | 90518089 | 90518140 | 90518089 | ID=MsG0180005338.01.T01:exon:48017;Parent=MsG0180005338.01.T01 |
| Chr1 | exon | 90518519 | 90518592 | 90518519 | ID=MsG0180005338.01.T01:exon:48018;Parent=MsG0180005338.01.T01 |
| Chr1 | exon | 90519343 | 90519512 | 90519343 | ID=MsG0180005338.01.T01:exon:48019;Parent=MsG0180005338.01.T01 |
| Chr1 | exon | 90519728 | 90519875 | 90519728 | ID=MsG0180005338.01.T01:exon:48020;Parent=MsG0180005338.01.T01 |
| Chr1 | CDS | 90518089 | 90518140 | 90518089 | ID=MsG0180005338.01.T01:cds;Parent=MsG0180005338.01.T01 |
| Chr1 | CDS | 90518519 | 90518592 | 90518519 | ID=MsG0180005338.01.T01:cds;Parent=MsG0180005338.01.T01 |
| Chr1 | CDS | 90519343 | 90519512 | 90519343 | ID=MsG0180005338.01.T01:cds;Parent=MsG0180005338.01.T01 |
| Chr1 | CDS | 90519728 | 90519875 | 90519728 | ID=MsG0180005338.01.T01:cds;Parent=MsG0180005338.01.T01 |
| Gene Sequence |
| Protein sequence |
