AlfalfaGEDB | MsG0180005338.01

M. sativa cultivar ZhongmuNo.1 / MsG0180005338.01

KEGG: -
GO: -
PFAM: PF07343

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005338.01.T01	KEH43619.1	97.59	83	2	0	65	147	41	123	8.77E-48	163

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005338.01.T01	A0A072VNL7	97.590	83	2	0	65	147	41	123	4.19e-48	163

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048887.01	MsG0180005338.01	0.810654	1.035142e-50	6.275843e-48
MsG0080049023.01	MsG0180005338.01	0.830260	3.245936e-55	3.402420e-52
MsG0180000466.01	MsG0180005338.01	-0.832229	1.064754e-55	1.182698e-52
MsG0180000490.01	MsG0180005338.01	0.813621	2.333189e-51	1.531277e-48
MsG0180000719.01	MsG0180005338.01	0.812050	5.153212e-51	3.242120e-48
MsG0180000976.01	MsG0180005338.01	0.823297	1.493911e-53	1.281185e-50
MsG0180001523.01	MsG0180005338.01	0.801449	8.955725e-49	4.278190e-46
MsG0180001615.01	MsG0180005338.01	0.835074	2.073980e-56	2.508248e-53
MsG0180002891.01	MsG0180005338.01	0.817413	3.340553e-52	2.431206e-49
MsG0180003351.01	MsG0180005338.01	0.804644	1.956694e-49	1.014245e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005338.01.T01	MTR_1g097430	97.590	83	2	0	65	147	41	123	1.06e-51	163
MsG0180005338.01.T01	MTR_1g097430	97.590	83	2	0	65	147	85	167	3.71e-51	163
MsG0180005338.01.T01	MTR_1g097430	97.590	83	2	0	65	147	85	167	6.53e-51	163
MsG0180005338.01.T01	MTR_1g097430	88.043	92	2	1	65	147	85	176	4.47e-48	155

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005338.01.T01	AT1G22750	54.217	83	38	65	147	87	169	5.36e-22	88.2
MsG0180005338.01.T01	AT1G22750	54.217	83	38	65	147	87	169	5.79e-22	88.2
MsG0180005338.01.T01	AT1G22750	54.217	83	38	65	147	87	169	6.51e-22	88.2
MsG0180005338.01.T01	AT1G22750	54.217	83	38	65	147	87	169	7.12e-22	88.2

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Find 18 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACGGAGTCAATAGCTCTGTA+CGG	0.618927	1:-90519851	None:intergenic
AGTGACAAGAGTGTATACCA+AGG	0.744399	1:-90519814	None:intergenic
ATATGATGGAAAATTGGCTT+AGG	0.498442	1:+90518087	None:intergenic
ATTGGGTCAGCTCGATTCTT+TGG	0.271091	1:+90518544	MsG0180005338.01.T01:CDS
CAACACCCAAAATGCTGAAA+AGG	0.432749	1:-90519779	None:intergenic
CCAGGCCTGGGTTATTTACA+AGG	0.474179	1:+90518515	MsG0180005338.01.T01:intron
CGCAATAGAACATAATACAT+AGG	0.530191	1:-90519478	None:intergenic
GCAATAGAACATAATACATA+GGG	0.563470	1:-90519477	None:intergenic
GTATACACTCTTGTCACTGA+TGG	0.490061	1:+90519819	MsG0180005338.01.T01:CDS
GTCAATAGCTCTGTACGGAA+AGG	0.603621	1:-90519846	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAGTAGATTATGTAGTA+AGG	+	Chr1:90518124-90518143	MsG0180005338.01.T01:intron	30.0%
CAGATAGATATTGGGTATTA+TGG	+	Chr1:90518848-90518867	MsG0180005338.01.T01:intron	30.0%
CGCAATAGAACATAATACAT+AGG	-	Chr1:90519481-90519500	None:intergenic	30.0%
CTGAAGTACAGATAGATATT+GGG	+	Chr1:90518840-90518859	MsG0180005338.01.T01:intron	30.0%
AAGCTCACATTGAAGTTTCT+AGG	+	Chr1:90519300-90519319	MsG0180005338.01.T01:intron	35.0%
GTTACAAGGATAGTAGAACA+AGG	-	Chr1:90518759-90518778	None:intergenic	35.0%
AGAGCTGATGAAACTTCAGT+TGG	-	Chr1:90518470-90518489	None:intergenic	40.0%
AGTAAGGAGAGTAGATCAGA+TGG	+	Chr1:90518140-90518159	MsG0180005338.01.T01:intron	40.0%
CAACACCCAAAATGCTGAAA+AGG	-	Chr1:90519782-90519801	None:intergenic	40.0%
CCAATTTCCAAGTGGATACA+GGG	+	Chr1:90518940-90518959	MsG0180005338.01.T01:intron	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	90518089	90519875	90518089	ID=MsG0180005338.01;Name=MsG0180005338.01
Chr1	mRNA	90518089	90519875	90518089	ID=MsG0180005338.01.T01;Parent=MsG0180005338.01;Name=MsG0180005338.01.T01;_AED=0.49;_eAED=0.62;_QI=0\|0.33\|0.25\|1\|0.33\|0.25\|4\|0\|147
Chr1	exon	90518089	90518140	90518089	ID=MsG0180005338.01.T01:exon:48017;Parent=MsG0180005338.01.T01
Chr1	exon	90518519	90518592	90518519	ID=MsG0180005338.01.T01:exon:48018;Parent=MsG0180005338.01.T01
Chr1	exon	90519343	90519512	90519343	ID=MsG0180005338.01.T01:exon:48019;Parent=MsG0180005338.01.T01
Chr1	exon	90519728	90519875	90519728	ID=MsG0180005338.01.T01:exon:48020;Parent=MsG0180005338.01.T01
Chr1	CDS	90518089	90518140	90518089	ID=MsG0180005338.01.T01:cds;Parent=MsG0180005338.01.T01
Chr1	CDS	90518519	90518592	90518519	ID=MsG0180005338.01.T01:cds;Parent=MsG0180005338.01.T01
Chr1	CDS	90519343	90519512	90519343	ID=MsG0180005338.01.T01:cds;Parent=MsG0180005338.01.T01
Chr1	CDS	90519728	90519875	90519728	ID=MsG0180005338.01.T01:cds;Parent=MsG0180005338.01.T01

Gene Sequence

>MsG0180005338.01.T01

ATGATGGAAAATTGGCTTAGGTGGTTTGAGCATGTAGAGAGTAGATTATGTAGCCTGGGTTATTTACAAGGAAGCAAATTGGGTCAGCTCGATTCTTTGGATAATTTTACTTATTGGCTTTGGAAGGATCGTTTAAAGGAATCTCACGTGCTGATTTATTTTTCCATTTCTCTGTGGTATTTTTATTGTTTCAGCATTGCTACATCTGCCTATATTGTTGTGCAATTTTTGAAGCTGTCATCACAAGAGTCTTCACAGGACCCTATGTATTATGTTCTATTGCGACATCCACACAAGAGTGGCACAGAACCAAAAACAAAGTGTTCTATTGTTGCGACTCTAAGAATCCTTTTCAGCATTTTGGGTGTTGTCATGCTTGGAACCTTGGTATACACTCTTGTCACTGATGGTTCTCCTTTCCGTACAGAGCTATTGACTCCGTAA

Protein sequence

>MsG0180005338.01.T01

MMENWLRWFEHVESRLCSLGYLQGSKLGQLDSLDNFTYWLWKDRLKESHVLIYFSISLWYFYCFSIATSAYIVVQFLKLSSQESSQDPMYYVLLRHPHKSGTEPKTKCSIVATLRILFSILGVVMLGTLVYTLVTDGSPFRTELLTP*