AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011083.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011083.01.T01 MTR_2g098330 90.909 363 32 1 16 377 91 453 0.0 625
MsG0280011083.01.T01 MTR_2g098330 90.634 363 32 2 16 377 91 452 0.0 619
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011083.01.T01 AT5G12930 43.119 327 153 9 9 316 85 397 3.87e-72 232

Find 111 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTACAAAACCATATTAA+TGG 0.223356 2:-79274685 None:intergenic
AAAGAAGGATTTGGTTGTTC+TGG 0.252617 2:+79272989 MsG0280011083.01.T01:CDS
GTCAACATTCTACAGGTTTA+TGG 0.253819 2:+79274592 MsG0280011083.01.T01:three_prime_UTR
GTTTCTTATTGTGCTGTTAT+TGG 0.258021 2:+79270122 MsG0280011083.01.T01:CDS
TGAAAATCTCTCGATCCTTT+TGG 0.259018 2:-79270162 None:intergenic
AATTGTAGATTCAGAATTCT+TGG 0.260695 2:-79274126 None:intergenic
TTCCTTCTGTAATGAATATA+TGG 0.287784 2:+79271865 MsG0280011083.01.T01:CDS
AATGTCTGGCTTGTCGGATT+TGG 0.295447 2:+79272275 MsG0280011083.01.T01:CDS
TAGAGAAGGGTGACTTATAT+TGG 0.298699 2:-79272233 None:intergenic
CTGAATTAGAAGACATTATA+CGG 0.313995 2:+79272940 MsG0280011083.01.T01:CDS
TTCAAAACTAAAGAAGGATT+TGG 0.320274 2:+79272980 MsG0280011083.01.T01:CDS
TTGCAATTAGATGAAACATT+TGG 0.367954 2:+79271788 MsG0280011083.01.T01:CDS
TTAAGAAATCCGTTGAGCTT+AGG 0.369730 2:+79270188 MsG0280011083.01.T01:CDS
AGATAACCTCATTTATGATA+TGG 0.377526 2:+79274016 MsG0280011083.01.T01:CDS
TGTGGCAGCTGAATTTCATT+TGG 0.377686 2:-79273987 None:intergenic
TAAGAAGGAATTTCTTTAAG+AGG 0.384480 2:-79274230 None:intergenic
TAAGAAATCCGTTGAGCTTA+GGG 0.394216 2:+79270189 MsG0280011083.01.T01:CDS
AAGATGTTTATAATCTTAAG+AGG 0.402964 2:+79272742 MsG0280011083.01.T01:CDS
TCCAAATATGTAAGAACAAA+AGG 0.409425 2:-79274504 None:intergenic
GGGTTGCCGTTAGTTGTTCA+TGG 0.409522 2:-79269857 None:intergenic
CTCAGAAGAGTTTAGCAGAT+TGG 0.411871 2:-79272802 None:intergenic
AACAATTTCAAAACTAAAGA+AGG 0.414561 2:+79272974 MsG0280011083.01.T01:CDS
CACATCTGCTGCTGATATCC+AGG 0.416831 2:+79272308 MsG0280011083.01.T01:CDS
ACAATAAGAAACCGATGAAT+AGG 0.418221 2:-79270111 None:intergenic
TGCAGGTTATGCAGCTTTCA+AGG 0.419818 2:+79273934 MsG0280011083.01.T01:intron
GTAGCCAGCTATTGCTGTCT+TGG 0.421687 2:+79274708 MsG0280011083.01.T01:three_prime_UTR
ATCAAATAGTAGCAAACAAT+AGG 0.424387 2:+79274567 MsG0280011083.01.T01:three_prime_UTR
CTCCTCTTGGTCATTAGAGA+AGG 0.433356 2:-79272247 None:intergenic
CGTTAACAACCCGTCCTTGA+AGG 0.436333 2:-79270012 None:intergenic
TAGCCAGCTATTGCTGTCTT+GGG 0.436751 2:+79274709 MsG0280011083.01.T01:three_prime_UTR
CAGACATTCTTCTCTCCTCT+TGG 0.440165 2:-79272260 None:intergenic
GGTAATGGTGAAGTAGCGTT+AGG 0.448670 2:-79269878 None:intergenic
TTTGGTTGTTCTGGAACAAA+AGG 0.449334 2:+79272998 MsG0280011083.01.T01:CDS
CGACGGCGGGAGAGAGTGAT+TGG 0.450699 2:-79269920 None:intergenic
GACTAATTACTCATTAAGTA+TGG 0.452612 2:+79274764 MsG0280011083.01.T01:three_prime_UTR
TAATTGCAATTCTCCGTCCT+TGG 0.457323 2:-79271774 None:intergenic
CAAGAGGAGAGAAGAATGTC+TGG 0.459713 2:+79272261 MsG0280011083.01.T01:CDS
GTTGGTAGAATGACATCAAC+AGG 0.459761 2:-79274104 None:intergenic
TGATGAACTTGCATTTGCTT+GGG 0.460645 2:+79270077 MsG0280011083.01.T01:exon
GAGAAGAATGTCTGGCTTGT+CGG 0.462441 2:+79272269 MsG0280011083.01.T01:CDS
GCATTAGATTTCTGATAAGA+AGG 0.463964 2:-79274245 None:intergenic
AGATCTTGTGCATTGTTGAC+AGG 0.464468 2:-79274080 None:intergenic
TTATGCTCAGTTTAACAACT+TGG 0.475767 2:+79272710 MsG0280011083.01.T01:intron
ATTTGGAATACTTGCAGAGA+AGG 0.479701 2:-79273970 None:intergenic
AGTTTGTTGATTGCGGTTGT+TGG 0.481813 2:+79271825 MsG0280011083.01.T01:CDS
GTGATGAACTTGCATTTGCT+TGG 0.487161 2:+79270076 MsG0280011083.01.T01:exon
ATGAGGTTATCTCTCATTTG+TGG 0.489300 2:-79274005 None:intergenic
TTGCAATTCTCCGTCCTTGG+TGG 0.492663 2:-79271771 None:intergenic
TTGCTGCTGCTCAGTCCAAA+AGG 0.495838 2:+79270147 MsG0280011083.01.T01:CDS
AAAACAATTGTCACCTCGTA+AGG 0.497486 2:+79274286 MsG0280011083.01.T01:CDS
AATGAGTAATTAGTCTATGA+AGG 0.508399 2:-79274756 None:intergenic
CTGGATTAACCTTCAAGGAC+GGG 0.510704 2:+79270003 MsG0280011083.01.T01:five_prime_UTR
GGCGGAGAGACGACGACGGC+GGG 0.511854 2:-79269933 None:intergenic
ATGGCCTGGATTAACCTTCA+AGG 0.513528 2:+79269998 MsG0280011083.01.T01:five_prime_UTR
TAAATATAGATAGTAGCAGC+AGG 0.513937 2:+79274645 MsG0280011083.01.T01:three_prime_UTR
ATAGGTAGTCAACATTCTAC+AGG 0.514539 2:+79274585 MsG0280011083.01.T01:three_prime_UTR
CATCCCAAGACAGCAATAGC+TGG 0.515588 2:-79274712 None:intergenic
CCGCCGCAACGGTCGAGCCG+CGG 0.517144 2:+79269951 MsG0280011083.01.T01:five_prime_UTR
TTGGAGGACCTCATTTCCAC+TGG 0.518085 2:-79272214 None:intergenic
TGAAGGTTAATCCAGGCCAT+TGG 0.520684 2:-79269995 None:intergenic
TGTCTCCTTGTAGGTTGCTG+TGG 0.522837 2:+79274460 MsG0280011083.01.T01:intron
AGTAGAAGACGATCTCTCAA+TGG 0.533967 2:+79274320 MsG0280011083.01.T01:CDS
TACCATATATTCATTACAGA+AGG 0.538276 2:-79271867 None:intergenic
GTGCGAGTGCAAATAAGAGA+TGG 0.543346 2:+79274351 MsG0280011083.01.T01:CDS
GTAGATTCAGAATTCTTGGT+TGG 0.551861 2:-79274122 None:intergenic
TCGTCGTCTCTCCGCCGCAA+CGG 0.552443 2:+79269940 MsG0280011083.01.T01:five_prime_UTR
CGCGGCTAGAACTGTTGGTG+TGG 0.555199 2:+79270048 MsG0280011083.01.T01:five_prime_UTR
ACGCCGCGGCTCGACCGTTG+CGG 0.555310 2:-79269954 None:intergenic
CGAATTAAGTTTGTTGATTG+CGG 0.555870 2:+79271818 MsG0280011083.01.T01:CDS
AGAAGGGTGACTTATATTGG+AGG 0.556146 2:-79272230 None:intergenic
AAGAGCCTCCAGTGGAAATG+AGG 0.559249 2:+79272206 MsG0280011083.01.T01:CDS
TAAGAGGGACTGTGATGAGA+AGG 0.561669 2:+79272758 MsG0280011083.01.T01:CDS
CCGTCCTTGAAGGTTAATCC+AGG 0.562538 2:-79270002 None:intergenic
CCGCGGCTCGACCGTTGCGG+CGG 0.564992 2:-79269951 None:intergenic
GGAATACTTGCAGAGAAGGA+TGG 0.566765 2:-79273966 None:intergenic
ACTATCAGAATCAGAAGATG+AGG 0.570063 2:-79274054 None:intergenic
GCTAGCGCGGCTAGAACTGT+TGG 0.576671 2:+79270043 MsG0280011083.01.T01:five_prime_UTR
GTAATGGTGAAGTAGCGTTA+GGG 0.578358 2:-79269877 None:intergenic
TCCTCTTGGTCATTAGAGAA+GGG 0.585045 2:-79272246 None:intergenic
CGGCGGGAGAGAGTGATTGG+TGG 0.585218 2:-79269917 None:intergenic
ATCAGAAGATGAGGGGCTAG+TGG 0.588405 2:-79274045 None:intergenic
CCTGGATTAACCTTCAAGGA+CGG 0.589852 2:+79270002 MsG0280011083.01.T01:five_prime_UTR
ACGCTTCCATGAACAACTAA+CGG 0.591030 2:+79269851 MsG0280011083.01.T01:five_prime_UTR
TGCTGTCCATATCATAAATG+AGG 0.592185 2:-79274022 None:intergenic
TGCGAGTGCAAATAAGAGAT+GGG 0.593088 2:+79274352 MsG0280011083.01.T01:CDS
CTATCAGAATCAGAAGATGA+GGG 0.593200 2:-79274053 None:intergenic
TCAGCTGTTATCAAGCATGC+AGG 0.594282 2:+79271676 MsG0280011083.01.T01:CDS
AATTTCTTTAAGAGGACTAG+CGG 0.594712 2:-79274222 None:intergenic
TTCTGAGGTTGCTAATAGCA+AGG 0.595094 2:+79272818 MsG0280011083.01.T01:CDS
AAGAAGTTATCCACCAAGGA+CGG 0.607937 2:+79271761 MsG0280011083.01.T01:CDS
AGATGTTTATAATCTTAAGA+GGG 0.615181 2:+79272743 MsG0280011083.01.T01:CDS
ACTGGAGGCTCTTCTACTCA+AGG 0.617031 2:-79272196 None:intergenic
ACCCTTCTCTAATGACCAAG+AGG 0.619980 2:+79272245 MsG0280011083.01.T01:CDS
ATTGGCTTCGAAAATGAGAT+CGG 0.626620 2:-79269977 None:intergenic
GAGGACCTCATTTCCACTGG+AGG 0.630298 2:-79272211 None:intergenic
TGTGGAATGTAGCAGAGTAC+AGG 0.632552 2:+79274478 MsG0280011083.01.T01:three_prime_UTR
CGGCGGAGAGACGACGACGG+CGG 0.644260 2:-79269934 None:intergenic
CAATCTGCTAAACTCTTCTG+AGG 0.648603 2:+79272803 MsG0280011083.01.T01:CDS
ATAAGAAACCGATGAATAGG+CGG 0.650348 2:-79270108 None:intergenic
TATACATACCCTAAGCTCAA+CGG 0.651300 2:-79270197 None:intergenic
AAATATAGATAGTAGCAGCA+GGG 0.664121 2:+79274646 MsG0280011083.01.T01:three_prime_UTR
GGTGGAATTGAAACGAGACA+TGG 0.665905 2:-79269899 None:intergenic
TTGAGTAGAAGAGCCTCCAG+TGG 0.670401 2:+79272198 MsG0280011083.01.T01:CDS
ATTGAAACGAGACATGGTAA+TGG 0.670705 2:-79269893 None:intergenic
TATCAGAATCAGAAGATGAG+GGG 0.677495 2:-79274052 None:intergenic
TAACGCTGATGAAGCTAGCG+CGG 0.686137 2:+79270030 MsG0280011083.01.T01:five_prime_UTR
TAGCGGATTGAAATTTCGAG+CGG 0.689209 2:-79274205 None:intergenic
GAAAATGAGATCGGACGCCG+CGG 0.709704 2:-79269968 None:intergenic
TATCAAGAAGTTATCCACCA+AGG 0.731353 2:+79271757 MsG0280011083.01.T01:CDS
AATTAGAAGACATTATACGG+AGG 0.745017 2:+79272943 MsG0280011083.01.T01:CDS
TTGCGGCGGAGAGACGACGA+CGG 0.751092 2:-79269937 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTAGTAGTATATATAT+TGG + Chr2:79273602-79273621 MsG0280011083.01.T01:intron 10.0%
!! AATTTACAAAACCATATTAA+TGG - Chr2:79274688-79274707 None:intergenic 15.0%
!! ATAAAGCCTATTAATTAAAT+AGG + Chr2:79273447-79273466 MsG0280011083.01.T01:intron 15.0%
!! TAAATAATGAAATCTTACAA+AGG - Chr2:79273638-79273657 None:intergenic 15.0%
!! TAAGAATTTAAAAGTCAAAT+CGG - Chr2:79273186-79273205 None:intergenic 15.0%
!! TACTAAATATTGTCAAATAA+TGG + Chr2:79272047-79272066 MsG0280011083.01.T01:intron 15.0%
!! TTATAAATACATCATATATC+AGG + Chr2:79272388-79272407 MsG0280011083.01.T01:intron 15.0%
!! TTATACATAAAAAGCTTAAT+AGG - Chr2:79273518-79273537 None:intergenic 15.0%
!!! TTAATTATTTGAAAAGCATT+TGG + Chr2:79270295-79270314 MsG0280011083.01.T01:intron 15.0%
!!! TTTTTAAATTAAGATTGTAG+AGG - Chr2:79270687-79270706 None:intergenic 15.0%
!! AAAAACTTAGTGTTATATAG+CGG + Chr2:79271984-79272003 MsG0280011083.01.T01:intron 20.0%
!! AACAATTTCAAAACTAAAGA+AGG + Chr2:79272974-79272993 MsG0280011083.01.T01:CDS 20.0%
!! AAGAATTTAAAAGTCAAATC+GGG - Chr2:79273185-79273204 None:intergenic 20.0%
!! AAGATGTTTATAATCTTAAG+AGG + Chr2:79272742-79272761 MsG0280011083.01.T01:CDS 20.0%
!! AATTAGTAATTGCTTAATTG+TGG + Chr2:79272540-79272559 MsG0280011083.01.T01:intron 20.0%
!! AATTGTTATAATATTGTTGC+TGG + Chr2:79270246-79270265 MsG0280011083.01.T01:intron 20.0%
!! AGATGTTTATAATCTTAAGA+GGG + Chr2:79272743-79272762 MsG0280011083.01.T01:CDS 20.0%
!! ATAGAACTAATAAAAACACA+AGG - Chr2:79272653-79272672 None:intergenic 20.0%
!! ATTGTTATAATATTGTTGCT+GGG + Chr2:79270247-79270266 MsG0280011083.01.T01:intron 20.0%
!! TGAAATGCTTCTTATATTAA+TGG + Chr2:79273314-79273333 MsG0280011083.01.T01:intron 20.0%
!! TGTTATGTTAATAGTCATTT+GGG + Chr2:79270466-79270485 MsG0280011083.01.T01:intron 20.0%
!! TTGAATGTGTGTATTAATAT+TGG + Chr2:79271629-79271648 MsG0280011083.01.T01:intron 20.0%
!! TTGTTATGTTAATAGTCATT+TGG + Chr2:79270465-79270484 MsG0280011083.01.T01:intron 20.0%
!!! TGCTTTTGATTTTTTTATCA+TGG + Chr2:79271569-79271588 MsG0280011083.01.T01:intron 20.0%
!!! TGTAAAATAGGCTTTTAAAT+AGG + Chr2:79273739-79273758 MsG0280011083.01.T01:intron 20.0%
!!! TTAAGTTTTAGCCATTAATA+TGG + Chr2:79274674-79274693 MsG0280011083.01.T01:three_prime_UTR 20.0%
!!! TTATTATATAGCTTTTCACT+TGG + Chr2:79271918-79271937 MsG0280011083.01.T01:intron 20.0%
!!! TTCAAATTTTCATCAGAAAT+TGG - Chr2:79270274-79270293 None:intergenic 20.0%
! AACTCATATACTTACTGTAT+TGG + Chr2:79271893-79271912 MsG0280011083.01.T01:intron 25.0%
! AACTTCAACGATATCAATAA+TGG - Chr2:79273549-79273568 None:intergenic 25.0%
! AATTGTAGATTCAGAATTCT+TGG - Chr2:79274129-79274148 None:intergenic 25.0%
! ACTCATATACTTACTGTATT+GGG + Chr2:79271894-79271913 MsG0280011083.01.T01:intron 25.0%
! AGATAACCTCATTTATGATA+TGG + Chr2:79274016-79274035 MsG0280011083.01.T01:CDS 25.0%
! ATATTGTCAAATAATGGTAG+CGG + Chr2:79272053-79272072 MsG0280011083.01.T01:intron 25.0%
! ATCAAATAGTAGCAAACAAT+AGG + Chr2:79274567-79274586 MsG0280011083.01.T01:three_prime_UTR 25.0%
! ATCTTCAATATGAGAAAACT+TGG + Chr2:79271436-79271455 MsG0280011083.01.T01:intron 25.0%
! ATTGACATAGTTAAATGCAA+TGG + Chr2:79272570-79272589 MsG0280011083.01.T01:intron 25.0%
! ATTGTAGTGAAAATGATAAG+TGG - Chr2:79272905-79272924 None:intergenic 25.0%
! CAAAAATCTTAAATTCGTCA+GGG + Chr2:79274168-79274187 MsG0280011083.01.T01:CDS 25.0%
! CTAAATAACCAATCATATGA+AGG - Chr2:79273590-79273609 None:intergenic 25.0%
! CTGAATTAGAAGACATTATA+CGG + Chr2:79272940-79272959 MsG0280011083.01.T01:CDS 25.0%
! CTGGAATTCAATTTACATTA+AGG + Chr2:79274404-79274423 MsG0280011083.01.T01:intron 25.0%
! GACTAATTACTCATTAAGTA+TGG + Chr2:79274764-79274783 MsG0280011083.01.T01:three_prime_UTR 25.0%
! GTTATGTTAATAGTCATTTG+GGG + Chr2:79270467-79270486 MsG0280011083.01.T01:intron 25.0%
! TAAGAAGGAATTTCTTTAAG+AGG - Chr2:79274233-79274252 None:intergenic 25.0%
! TACATGGTAGATATAAACAA+TGG + Chr2:79273029-79273048 MsG0280011083.01.T01:intron 25.0%
! TACCATATATTCATTACAGA+AGG - Chr2:79271870-79271889 None:intergenic 25.0%
! TCCAAATATGTAAGAACAAA+AGG - Chr2:79274507-79274526 None:intergenic 25.0%
! TTAATACACACATTCAAAGT+TGG - Chr2:79271626-79271645 None:intergenic 25.0%
! TTAGTACTAAATACGTATCA+TGG - Chr2:79272033-79272052 None:intergenic 25.0%
! TTCAAAACTAAAGAAGGATT+TGG + Chr2:79272980-79272999 MsG0280011083.01.T01:CDS 25.0%
! TTCCTTCTGTAATGAATATA+TGG + Chr2:79271865-79271884 MsG0280011083.01.T01:CDS 25.0%
! TTGCAATTAGATGAAACATT+TGG + Chr2:79271788-79271807 MsG0280011083.01.T01:CDS 25.0%
! TTGTAGTGAAAATGATAAGT+GGG - Chr2:79272904-79272923 None:intergenic 25.0%
! TTGTTATAATATTGTTGCTG+GGG + Chr2:79270248-79270267 MsG0280011083.01.T01:intron 25.0%
! TTTCTTTATATCCGATTTAG+AGG + Chr2:79271184-79271203 MsG0280011083.01.T01:intron 25.0%
!! AATGAGTAATTAGTCTATGA+AGG - Chr2:79274759-79274778 None:intergenic 25.0%
!! ACAAAAGGTACATATATACA+TGG + Chr2:79273013-79273032 MsG0280011083.01.T01:intron 25.0%
!! TTTCACTAAAAAAGACCTTT+TGG + Chr2:79270547-79270566 MsG0280011083.01.T01:intron 25.0%
!!! GAATTCGAGATCTTTTAAAA+TGG + Chr2:79271225-79271244 MsG0280011083.01.T01:intron 25.0%
!!! TTAATTGTTTTACTCTCTTG+CGG + Chr2:79272611-79272630 MsG0280011083.01.T01:intron 25.0%
!!! TTTGAATTTTGAGTTTGAGA+GGG - Chr2:79269829-79269848 None:intergenic 25.0%
AAATATAGATAGTAGCAGCA+GGG + Chr2:79274646-79274665 MsG0280011083.01.T01:three_prime_UTR 30.0%
AATAAAAACACAAGGAAACC+AGG - Chr2:79272645-79272664 None:intergenic 30.0%
AATGCACCAATAGGTAATTT+AGG + Chr2:79273052-79273071 MsG0280011083.01.T01:intron 30.0%
AATTAGAAGACATTATACGG+AGG + Chr2:79272943-79272962 MsG0280011083.01.T01:CDS 30.0%
ACAATAAGAAACCGATGAAT+AGG - Chr2:79270114-79270133 None:intergenic 30.0%
ACACTGAAGAAAATAATACC+TGG - Chr2:79272329-79272348 None:intergenic 30.0%
ACATAAAAAGCTTAATAGGC+CGG - Chr2:79273514-79273533 None:intergenic 30.0%
ACTATGACAACAACATTTCT+TGG - Chr2:79270943-79270962 None:intergenic 30.0%
ACTTATAGCATCCTCTAAAT+CGG - Chr2:79271198-79271217 None:intergenic 30.0%
CACATATATTCATGTGCTTT+AGG + Chr2:79273662-79273681 MsG0280011083.01.T01:intron 30.0%
CTCATATACTTACTGTATTG+GGG + Chr2:79271895-79271914 MsG0280011083.01.T01:intron 30.0%
CTGATTGAATTTGTAGTGTT+TGG - Chr2:79270771-79270790 None:intergenic 30.0%
GCAAAAATCTTAAATTCGTC+AGG + Chr2:79274167-79274186 MsG0280011083.01.T01:CDS 30.0%
GCAAAATGTTCGTAAATTAG+TGG + Chr2:79270423-79270442 MsG0280011083.01.T01:intron 30.0%
GCATTAGATTTCTGATAAGA+AGG - Chr2:79274248-79274267 None:intergenic 30.0%
TAAATATAGATAGTAGCAGC+AGG + Chr2:79274645-79274664 MsG0280011083.01.T01:three_prime_UTR 30.0%
TAATAGGCCAAAATTTACGA+AGG - Chr2:79273688-79273707 None:intergenic 30.0%
TATGCACCTAAATTACCTAT+TGG - Chr2:79273061-79273080 None:intergenic 30.0%
TCAAATAGTAGCTTGAGTTA+AGG - Chr2:79270895-79270914 None:intergenic 30.0%
TCTTATATTAATGGCCCTTA+GGG + Chr2:79273323-79273342 MsG0280011083.01.T01:intron 30.0%
TGCTAGACTTAGTGTAAAAT+AGG + Chr2:79273727-79273746 MsG0280011083.01.T01:intron 30.0%
TGGGCTACTTCAAAAATTAT+AGG - Chr2:79273846-79273865 None:intergenic 30.0%
TGTAGTGTTTGGCAAAATTA+GGG - Chr2:79270760-79270779 None:intergenic 30.0%
TTATGCTCAGTTTAACAACT+TGG + Chr2:79272710-79272729 MsG0280011083.01.T01:intron 30.0%
TTCTGCACAGTTATAAATTG+CGG - Chr2:79271382-79271401 None:intergenic 30.0%
TTCTTATATTAATGGCCCTT+AGG + Chr2:79273322-79273341 MsG0280011083.01.T01:intron 30.0%
TTGTAGTGTTTGGCAAAATT+AGG - Chr2:79270761-79270780 None:intergenic 30.0%
TTTGTTTCATCACTATTTCC+AGG + Chr2:79271652-79271671 MsG0280011083.01.T01:intron 30.0%
! AATTTCTTTAAGAGGACTAG+CGG - Chr2:79274225-79274244 None:intergenic 30.0%
! GCCTTTTGTTCTTACATATT+TGG + Chr2:79274503-79274522 MsG0280011083.01.T01:three_prime_UTR 30.0%
! GTTTCTTATTGTGCTGTTAT+TGG + Chr2:79270122-79270141 MsG0280011083.01.T01:CDS 30.0%
! TAGGCTTTTAAATAGGCTTT+CGG + Chr2:79273746-79273765 MsG0280011083.01.T01:intron 30.0%
!! AATTTTGGCCTATTAGTAGT+AGG + Chr2:79273693-79273712 MsG0280011083.01.T01:intron 30.0%
!! AGTGGTTATGTTAGTTTGTA+GGG + Chr2:79270441-79270460 MsG0280011083.01.T01:intron 30.0%
!! AGTTTTTCAATAGACACGTT+AGG - Chr2:79271971-79271990 None:intergenic 30.0%
!! ATTGACTCACTTGTTATTGT+TGG + Chr2:79273086-79273105 MsG0280011083.01.T01:intron 30.0%
!! CGAATTAAGTTTGTTGATTG+CGG + Chr2:79271818-79271837 MsG0280011083.01.T01:CDS 30.0%
!! GACGAATTTAAGATTTTTGC+TGG - Chr2:79274167-79274186 None:intergenic 30.0%
!! TAGTGGTTATGTTAGTTTGT+AGG + Chr2:79270440-79270459 MsG0280011083.01.T01:intron 30.0%
!!! GTTTGAATTTTGAGTTTGAG+AGG - Chr2:79269830-79269849 None:intergenic 30.0%
!!! TATAATTTTTGAAGTAGCCC+AGG + Chr2:79273845-79273864 MsG0280011083.01.T01:intron 30.0%
AAAAAGCCTATTAAGCCAGT+CGG + Chr2:79273487-79273506 MsG0280011083.01.T01:intron 35.0%
AAAACAATTGTCACCTCGTA+AGG + Chr2:79274286-79274305 MsG0280011083.01.T01:CDS 35.0%
AAACAATGGAATGCACCAAT+AGG + Chr2:79273043-79273062 MsG0280011083.01.T01:intron 35.0%
AACTCAAGCCTTCATATGAT+TGG + Chr2:79273579-79273598 MsG0280011083.01.T01:intron 35.0%
ACAATGTGTATTGTTGGTGT+TGG - Chr2:79271327-79271346 None:intergenic 35.0%
ACTATCAGAATCAGAAGATG+AGG - Chr2:79274057-79274076 None:intergenic 35.0%
AGTAAGTCAGCTCAAAATTC+TGG + Chr2:79274385-79274404 MsG0280011083.01.T01:intron 35.0%
ATAAGAAACCGATGAATAGG+CGG - Chr2:79270111-79270130 None:intergenic 35.0%
ATAGGTAGTCAACATTCTAC+AGG + Chr2:79274585-79274604 MsG0280011083.01.T01:three_prime_UTR 35.0%
ATGAGGTTATCTCTCATTTG+TGG - Chr2:79274008-79274027 None:intergenic 35.0%
ATTGAAACGAGACATGGTAA+TGG - Chr2:79269896-79269915 None:intergenic 35.0%
CACAGTTATAAATTGCGGAT+GGG - Chr2:79271377-79271396 None:intergenic 35.0%
CACGAATAAGCATATGTACA+TGG - Chr2:79274436-79274455 None:intergenic 35.0%
CATGTAAGCCTACTACTAAT+AGG - Chr2:79273704-79273723 None:intergenic 35.0%
CTATCAGAATCAGAAGATGA+GGG - Chr2:79274056-79274075 None:intergenic 35.0%
CTTATATTAATGGCCCTTAG+GGG + Chr2:79273324-79273343 MsG0280011083.01.T01:intron 35.0%
CTTTATAAAAAGCTTGAGCC+TGG - Chr2:79273433-79273452 None:intergenic 35.0%
GCCTATTAATTAAATAGGCC+AGG + Chr2:79273452-79273471 MsG0280011083.01.T01:intron 35.0%
GCCTGGCCTATTTAATTAAT+AGG - Chr2:79273456-79273475 None:intergenic 35.0%
GGTTATCTGTCAAATGATAC+AGG + Chr2:79272409-79272428 MsG0280011083.01.T01:intron 35.0%
GTAGATTCAGAATTCTTGGT+TGG - Chr2:79274125-79274144 None:intergenic 35.0%
GTAGTGTTTGGCAAAATTAG+GGG - Chr2:79270759-79270778 None:intergenic 35.0%
GTCAACATTCTACAGGTTTA+TGG + Chr2:79274592-79274611 MsG0280011083.01.T01:three_prime_UTR 35.0%
GTGTCATCGTTGAATGATAT+TGG + Chr2:79272345-79272364 MsG0280011083.01.T01:intron 35.0%
TAAGAAATCCGTTGAGCTTA+GGG + Chr2:79270189-79270208 MsG0280011083.01.T01:CDS 35.0%
TAATTAAATAGGCCAGGCTA+AGG + Chr2:79273458-79273477 MsG0280011083.01.T01:intron 35.0%
TAGAGAAGGGTGACTTATAT+TGG - Chr2:79272236-79272255 None:intergenic 35.0%
TATACATACCCTAAGCTCAA+CGG - Chr2:79270200-79270219 None:intergenic 35.0%
TATCAAGAAGTTATCCACCA+AGG + Chr2:79271757-79271776 MsG0280011083.01.T01:CDS 35.0%
TATCAGAATCAGAAGATGAG+GGG - Chr2:79274055-79274074 None:intergenic 35.0%
TCCAATTAAAGTCAAGACCA+TGG - Chr2:79272508-79272527 None:intergenic 35.0%
TGATGAACTTGCATTTGCTT+GGG + Chr2:79270077-79270096 MsG0280011083.01.T01:exon 35.0%
TGCTGTCCATATCATAAATG+AGG - Chr2:79274025-79274044 None:intergenic 35.0%
TTAAGAAATCCGTTGAGCTT+AGG + Chr2:79270188-79270207 MsG0280011083.01.T01:CDS 35.0%
TTACAATCACCACGCAATTA+CGG - Chr2:79271047-79271066 None:intergenic 35.0%
! AAAGAAGGATTTGGTTGTTC+TGG + Chr2:79272989-79273008 MsG0280011083.01.T01:CDS 35.0%
! AACCTGCAGTCAATTTTGAA+AGG - Chr2:79273922-79273941 None:intergenic 35.0%
! AGCTAGCTTATAACTGATAG+CGG - Chr2:79270803-79270822 None:intergenic 35.0%
! AGGCTTTTAAATAGGCTTTC+GGG + Chr2:79273747-79273766 MsG0280011083.01.T01:intron 35.0%
! ATCTTTTTCCGCCTATTCAT+CGG + Chr2:79270100-79270119 MsG0280011083.01.T01:CDS 35.0%
! ATTGGCTTCGAAAATGAGAT+CGG - Chr2:79269980-79269999 None:intergenic 35.0%
! ATTGGTCAGCTCTTTTATTG+TGG - Chr2:79272787-79272806 None:intergenic 35.0%
! ATTTGGAATACTTGCAGAGA+AGG - Chr2:79273973-79273992 None:intergenic 35.0%
! CAATGTGTATTGTTGGTGTT+GGG - Chr2:79271326-79271345 None:intergenic 35.0%
! CTTTAGGCCTTCGTAAATTT+TGG + Chr2:79273678-79273697 MsG0280011083.01.T01:intron 35.0%
! GCCTTTTTAATAAACGAGCT+GGG - Chr2:79273411-79273430 None:intergenic 35.0%
! GTGAAAATGATAAGTGGGTT+AGG - Chr2:79272899-79272918 None:intergenic 35.0%
! TACGAGGTGACAATTGTTTT+TGG - Chr2:79274286-79274305 None:intergenic 35.0%
! TCCATGGTCTTGACTTTAAT+TGG + Chr2:79272504-79272523 MsG0280011083.01.T01:intron 35.0%
! TGAAAATCTCTCGATCCTTT+TGG - Chr2:79270165-79270184 None:intergenic 35.0%
! TGCATTTTATTCTCCAGAGT+TGG + Chr2:79272848-79272867 MsG0280011083.01.T01:intron 35.0%
!! AATGATAAGTGGGTTAGGAA+AGG - Chr2:79272894-79272913 None:intergenic 35.0%
!! AATTTTGAAAGGGCCATTAG+GGG - Chr2:79273911-79273930 None:intergenic 35.0%
!! ACCTGCAGTCAATTTTGAAA+GGG - Chr2:79273921-79273940 None:intergenic 35.0%
!! ACTCATTGACTTTGTTAGCA+GGG + Chr2:79272171-79272190 MsG0280011083.01.T01:intron 35.0%
!! ATGATAAGTGGGTTAGGAAA+GGG - Chr2:79272893-79272912 None:intergenic 35.0%
!! CAATTTTGAAAGGGCCATTA+GGG - Chr2:79273912-79273931 None:intergenic 35.0%
!! TCAATTTTGAAAGGGCCATT+AGG - Chr2:79273913-79273932 None:intergenic 35.0%
!! TTTGGTTGTTCTGGAACAAA+AGG + Chr2:79272998-79273017 MsG0280011083.01.T01:CDS 35.0%
!!! CTCTTTTTTAAGTCCTTACG+AGG - Chr2:79274302-79274321 None:intergenic 35.0%
!!! TTTTTTACCAAACAGAGCCT+TGG + Chr2:79270865-79270884 MsG0280011083.01.T01:intron 35.0%
AAAAATTATAGGCCTGAGCC+TGG - Chr2:79273835-79273854 None:intergenic 40.0%
AAAAGCCTATTAAGCCAGTC+GGG + Chr2:79273488-79273507 MsG0280011083.01.T01:intron 40.0%
AAGAAGTTATCCACCAAGGA+CGG + Chr2:79271761-79271780 MsG0280011083.01.T01:CDS 40.0%
ACGCTTCCATGAACAACTAA+CGG + Chr2:79269851-79269870 MsG0280011083.01.T01:five_prime_UTR 40.0%
AGAAAGTGACGGTTACCAAA+AGG - Chr2:79270565-79270584 None:intergenic 40.0%
AGAAGGGTGACTTATATTGG+AGG - Chr2:79272233-79272252 None:intergenic 40.0%
AGATCTTGTGCATTGTTGAC+AGG - Chr2:79274083-79274102 None:intergenic 40.0%
AGTAGAAGACGATCTCTCAA+TGG + Chr2:79274320-79274339 MsG0280011083.01.T01:CDS 40.0%
ATAAATTGCGGATGGGATCA+CGG - Chr2:79271370-79271389 None:intergenic 40.0%
ATAAGCTCGTGAGAAAGTGA+CGG - Chr2:79270576-79270595 None:intergenic 40.0%
ATAGTAACCAATAGTCCGAG+TGG + Chr2:79270958-79270977 MsG0280011083.01.T01:intron 40.0%
ATTACGGAATGATGCAGTTG+CGG - Chr2:79271031-79271050 None:intergenic 40.0%
CAATCTGCTAAACTCTTCTG+AGG + Chr2:79272803-79272822 MsG0280011083.01.T01:CDS 40.0%
CTCAGAAGAGTTTAGCAGAT+TGG - Chr2:79272805-79272824 None:intergenic 40.0%
CTTTAAATAGGCTAGGCCAT+AGG - Chr2:79273378-79273397 None:intergenic 40.0%
GAAGTTGCAATTTCCAACTC+TGG - Chr2:79272864-79272883 None:intergenic 40.0%
GCACAGTTATAAATTGCGGA+TGG - Chr2:79271378-79271397 None:intergenic 40.0%
GCCCAGCTCGTTTATTAAAA+AGG + Chr2:79273407-79273426 MsG0280011083.01.T01:intron 40.0%
GCTCGTTTATTAAAAAGGCC+AGG + Chr2:79273412-79273431 MsG0280011083.01.T01:intron 40.0%
GCTGTGACAATGTGTATTGT+TGG - Chr2:79271333-79271352 None:intergenic 40.0%
GTAATGGTGAAGTAGCGTTA+GGG - Chr2:79269880-79269899 None:intergenic 40.0%
GTGATGAACTTGCATTTGCT+TGG + Chr2:79270076-79270095 MsG0280011083.01.T01:exon 40.0%
TAATTGCAATTCTCCGTCCT+TGG - Chr2:79271777-79271796 None:intergenic 40.0%
TCCTCTTGGTCATTAGAGAA+GGG - Chr2:79272249-79272268 None:intergenic 40.0%
TGCGAGTGCAAATAAGAGAT+GGG + Chr2:79274352-79274371 MsG0280011083.01.T01:CDS 40.0%
TGTGGCAGCTGAATTTCATT+TGG - Chr2:79273990-79274009 None:intergenic 40.0%
! AGCCTATTTAAAGCCTAGCT+CGG + Chr2:79273385-79273404 MsG0280011083.01.T01:intron 40.0%
! ATAGTCATTTGGGGTCTGTT+TGG + Chr2:79270476-79270495 MsG0280011083.01.T01:intron 40.0%
! GATCTCATTTTCGAAGCCAA+TGG + Chr2:79269979-79269998 MsG0280011083.01.T01:five_prime_UTR 40.0%
! GCTGATAAGCTAGCTTATAG+CGG - Chr2:79270836-79270855 None:intergenic 40.0%
! GGCCTTTTTAATAAACGAGC+TGG - Chr2:79273412-79273431 None:intergenic 40.0%
! GTTGGTAGAATGACATCAAC+AGG - Chr2:79274107-79274126 None:intergenic 40.0%
!! AGCTAGGCTTTAAATAGGCT+AGG - Chr2:79273385-79273404 None:intergenic 40.0%
!! AGTTTGTTGATTGCGGTTGT+TGG + Chr2:79271825-79271844 MsG0280011083.01.T01:CDS 40.0%
!! CACTCATTGACTTTGTTAGC+AGG + Chr2:79272170-79272189 MsG0280011083.01.T01:intron 40.0%
!! TAGCGGATTGAAATTTCGAG+CGG - Chr2:79274208-79274227 None:intergenic 40.0%
!! TGATAAGTGGGTTAGGAAAG+GGG - Chr2:79272892-79272911 None:intergenic 40.0%
!! TTCTGAGGTTGCTAATAGCA+AGG + Chr2:79272818-79272837 MsG0280011083.01.T01:CDS 40.0%
!!! ATAGCTTTTCACTTGGTGCT+GGG + Chr2:79271925-79271944 MsG0280011083.01.T01:intron 40.0%
!!! CTTTTTTGTAAGCCTTAGCC+TGG - Chr2:79273473-79273492 None:intergenic 40.0%
!!! TATAGCTTTTCACTTGGTGC+TGG + Chr2:79271924-79271943 MsG0280011083.01.T01:intron 40.0%
AACCAATAGTCCGAGTGGTA+AGG + Chr2:79270963-79270982 MsG0280011083.01.T01:intron 45.0%
ACACATTGTCACAGCCACAA+TGG + Chr2:79271338-79271357 MsG0280011083.01.T01:intron 45.0%
ACATTCCACAGCAACCTACA+AGG - Chr2:79274468-79274487 None:intergenic 45.0%
ACCCTTCTCTAATGACCAAG+AGG + Chr2:79272245-79272264 MsG0280011083.01.T01:CDS 45.0%
ATATTAATGGCCCTTAGGGG+TGG + Chr2:79273327-79273346 MsG0280011083.01.T01:intron 45.0%
ATGGCCTGGATTAACCTTCA+AGG + Chr2:79269998-79270017 MsG0280011083.01.T01:five_prime_UTR 45.0%
ATTAGGGGTGGAAATAGGCT+AGG - Chr2:79273896-79273915 None:intergenic 45.0%
CAAGACCATGGAATGCAAAC+AGG - Chr2:79272496-79272515 None:intergenic 45.0%
CAAGAGGAGAGAAGAATGTC+TGG + Chr2:79272261-79272280 MsG0280011083.01.T01:CDS 45.0%
CAGACATTCTTCTCTCCTCT+TGG - Chr2:79272263-79272282 None:intergenic 45.0%
CCACATCAACCACTTGCTTA+CGG - Chr2:79271407-79271426 None:intergenic 45.0%
CCTCGAAATTGAGCCTATGA+CGG + Chr2:79273801-79273820 MsG0280011083.01.T01:intron 45.0%
CCTGGATTAACCTTCAAGGA+CGG + Chr2:79270002-79270021 MsG0280011083.01.T01:five_prime_UTR 45.0%
CTCCTCTTGGTCATTAGAGA+AGG - Chr2:79272250-79272269 None:intergenic 45.0%
CTCGAAATTGAGCCTATGAC+GGG + Chr2:79273802-79273821 MsG0280011083.01.T01:intron 45.0%
CTGGATTAACCTTCAAGGAC+GGG + Chr2:79270003-79270022 MsG0280011083.01.T01:five_prime_UTR 45.0%
GCCCTTTCAAAATTGACTGC+AGG + Chr2:79273917-79273936 MsG0280011083.01.T01:intron 45.0%
GCTTGAGTTAAGGAACACCA+AGG - Chr2:79270885-79270904 None:intergenic 45.0%
GGAATACTTGCAGAGAAGGA+TGG - Chr2:79273969-79273988 None:intergenic 45.0%
GGCTTCATCAGGCCTTAAAT+AGG + Chr2:79273768-79273787 MsG0280011083.01.T01:intron 45.0%
GGTCGAGCAAGTTTCTCAAT+GGG + Chr2:79271457-79271476 MsG0280011083.01.T01:intron 45.0%
GGTGGAATTGAAACGAGACA+TGG - Chr2:79269902-79269921 None:intergenic 45.0%
GTGCAACACCTCAATGTAGT+GGG + Chr2:79271081-79271100 MsG0280011083.01.T01:intron 45.0%
GTGCGAGTGCAAATAAGAGA+TGG + Chr2:79274351-79274370 MsG0280011083.01.T01:CDS 45.0%
TAAGAGGGACTGTGATGAGA+AGG + Chr2:79272758-79272777 MsG0280011083.01.T01:CDS 45.0%
TAGCCAGCTATTGCTGTCTT+GGG + Chr2:79274709-79274728 MsG0280011083.01.T01:three_prime_UTR 45.0%
TAGCCTATTTCCACCCCTAA+TGG + Chr2:79273895-79273914 MsG0280011083.01.T01:intron 45.0%
TATTAATGGCCCTTAGGGGT+GGG + Chr2:79273328-79273347 MsG0280011083.01.T01:intron 45.0%
TCAGCTGTTATCAAGCATGC+AGG + Chr2:79271676-79271695 MsG0280011083.01.T01:CDS 45.0%
TCGTGTTCATGTCTCCTTGT+AGG + Chr2:79274451-79274470 MsG0280011083.01.T01:intron 45.0%
TGAAGGTTAATCCAGGCCAT+TGG - Chr2:79269998-79270017 None:intergenic 45.0%
TGCAGGTTATGCAGCTTTCA+AGG + Chr2:79273934-79273953 MsG0280011083.01.T01:intron 45.0%
TGCATCATTCCGTAATTGCG+TGG + Chr2:79271035-79271054 MsG0280011083.01.T01:intron 45.0%
TGGTCGAGCAAGTTTCTCAA+TGG + Chr2:79271456-79271475 MsG0280011083.01.T01:intron 45.0%
TGTAGCCTGTTTGCATTCCA+TGG + Chr2:79272488-79272507 MsG0280011083.01.T01:intron 45.0%
TGTGGAATGTAGCAGAGTAC+AGG + Chr2:79274478-79274497 MsG0280011083.01.T01:three_prime_UTR 45.0%
TGTTCCAGTGTCGTCATTTG+CGG - Chr2:79272132-79272151 None:intergenic 45.0%
TTCCTTACCACTCGGACTAT+TGG - Chr2:79270968-79270987 None:intergenic 45.0%
! AATGTCTGGCTTGTCGGATT+TGG + Chr2:79272275-79272294 MsG0280011083.01.T01:CDS 45.0%
! CGTAAGCAAGTGGTTGATGT+GGG + Chr2:79271405-79271424 MsG0280011083.01.T01:intron 45.0%
! GAGAAGAATGTCTGGCTTGT+CGG + Chr2:79272269-79272288 MsG0280011083.01.T01:CDS 45.0%
! GGTAATGGTGAAGTAGCGTT+AGG - Chr2:79269881-79269900 None:intergenic 45.0%
! GGTTTGAGTTCCTTACCACT+CGG - Chr2:79270976-79270995 None:intergenic 45.0%
! TGCTTGATAACAGCTGATCC+TGG - Chr2:79271673-79271692 None:intergenic 45.0%
!! CACTACATTGAGGTGTTGCA+CGG - Chr2:79271082-79271101 None:intergenic 45.0%
!! TGAGGTGTTGCACGGATATT+AGG - Chr2:79271074-79271093 None:intergenic 45.0%
!! TTGAGCCTATGACGGGTAAT+AGG + Chr2:79273809-79273828 MsG0280011083.01.T01:intron 45.0%
!!! TTTTGAAGTAGCCCAGGCTT+GGG + Chr2:79273851-79273870 MsG0280011083.01.T01:intron 45.0%
!!! TTTTTGAAGTAGCCCAGGCT+TGG + Chr2:79273850-79273869 MsG0280011083.01.T01:intron 45.0%
AAGAGCCTCCAGTGGAAATG+AGG + Chr2:79272206-79272225 MsG0280011083.01.T01:CDS 50.0%
ACTGCAACTGTGCACTTGGT+AGG - Chr2:79270997-79271016 None:intergenic 50.0%
ACTGGAGGCTCTTCTACTCA+AGG - Chr2:79272199-79272218 None:intergenic 50.0%
AGGAACACCAAGGCTCTGTT+TGG - Chr2:79270875-79270894 None:intergenic 50.0%
ATAGGCTCAATTTCGAGGCC+TGG - Chr2:79273799-79273818 None:intergenic 50.0%
ATAGGCTTTCGGGCTTCATC+AGG + Chr2:79273757-79273776 MsG0280011083.01.T01:intron 50.0%
ATCAGAAGATGAGGGGCTAG+TGG - Chr2:79274048-79274067 None:intergenic 50.0%
CACAACTGCAACTGTGCACT+TGG - Chr2:79271001-79271020 None:intergenic 50.0%
CACATCTGCTGCTGATATCC+AGG + Chr2:79272308-79272327 MsG0280011083.01.T01:CDS 50.0%
CATCAGGCCTTAAATAGGCC+AGG + Chr2:79273773-79273792 MsG0280011083.01.T01:intron 50.0%
CATCCCAAGACAGCAATAGC+TGG - Chr2:79274715-79274734 None:intergenic 50.0%
CCATTGCACCCACTACATTG+AGG - Chr2:79271092-79271111 None:intergenic 50.0%
CCGTCATAGGCTCAATTTCG+AGG - Chr2:79273804-79273823 None:intergenic 50.0%
CCGTCCTTGAAGGTTAATCC+AGG - Chr2:79270005-79270024 None:intergenic 50.0%
CGTGCAACACCTCAATGTAG+TGG + Chr2:79271080-79271099 MsG0280011083.01.T01:intron 50.0%
CGTTAACAACCCGTCCTTGA+AGG - Chr2:79270015-79270034 None:intergenic 50.0%
CTATCCGCAAATGACGACAC+TGG + Chr2:79272125-79272144 MsG0280011083.01.T01:intron 50.0%
GATCACGGATATGGCCATTG+TGG - Chr2:79271355-79271374 None:intergenic 50.0%
GGGTTGCCGTTAGTTGTTCA+TGG - Chr2:79269860-79269879 None:intergenic 50.0%
GTAGCCAGCTATTGCTGTCT+TGG + Chr2:79274708-79274727 MsG0280011083.01.T01:three_prime_UTR 50.0%
TAACGCTGATGAAGCTAGCG+CGG + Chr2:79270030-79270049 MsG0280011083.01.T01:five_prime_UTR 50.0%
TGCAGAACACCGTAAGCAAG+TGG + Chr2:79271395-79271414 MsG0280011083.01.T01:intron 50.0%
TGGGGTCTGTTTGGTAAGAC+AGG + Chr2:79270485-79270504 MsG0280011083.01.T01:intron 50.0%
TGTCTCCTTGTAGGTTGCTG+TGG + Chr2:79274460-79274479 MsG0280011083.01.T01:intron 50.0%
TTGAGTAGAAGAGCCTCCAG+TGG + Chr2:79272198-79272217 MsG0280011083.01.T01:CDS 50.0%
TTGCAATTCTCCGTCCTTGG+TGG - Chr2:79271774-79271793 None:intergenic 50.0%
TTGCTGCTGCTCAGTCCAAA+AGG + Chr2:79270147-79270166 MsG0280011083.01.T01:CDS 50.0%
TTGGAGGACCTCATTTCCAC+TGG - Chr2:79272217-79272236 None:intergenic 50.0%
TTTGAAAGGGCCATTAGGGG+TGG - Chr2:79273908-79273927 None:intergenic 50.0%
! CATTTTCGAAGCCAATGGCC+TGG + Chr2:79269984-79270003 MsG0280011083.01.T01:five_prime_UTR 50.0%
! CCGTAAGCAAGTGGTTGATG+TGG + Chr2:79271404-79271423 MsG0280011083.01.T01:intron 50.0%
!! CCTCAATGTAGTGGGTGCAA+TGG + Chr2:79271089-79271108 MsG0280011083.01.T01:intron 50.0%
!! GGCCGAGCTAGGCTTTAAAT+AGG - Chr2:79273390-79273409 None:intergenic 50.0%
!!! TCTCTTGCGGTGCTTTTTCC+TGG + Chr2:79272624-79272643 MsG0280011083.01.T01:intron 50.0%
CATCGCGCATAGGTCGCATT+AGG + Chr2:79271115-79271134 MsG0280011083.01.T01:intron 55.0%
CCTGGCCTATTACCCGTCAT+AGG - Chr2:79273817-79273836 None:intergenic 55.0%
GAAAATGAGATCGGACGCCG+CGG - Chr2:79269971-79269990 None:intergenic 55.0%
GAGGACCTCATTTCCACTGG+AGG - Chr2:79272214-79272233 None:intergenic 55.0%
GCATAGGTCGCATTAGGCTG+TGG + Chr2:79271121-79271140 MsG0280011083.01.T01:intron 55.0%
GCTTTGTAAGGCCCAAGCCT+GGG - Chr2:79273865-79273884 None:intergenic 55.0%
GGGCCATTAGGGGTGGAAAT+AGG - Chr2:79273901-79273920 None:intergenic 55.0%
TGCGGATGGGATCACGGATA+TGG - Chr2:79271364-79271383 None:intergenic 55.0%
!! CCTATGACGGGTAATAGGCC+AGG + Chr2:79273814-79273833 MsG0280011083.01.T01:intron 55.0%
ACGGGTAATAGGCCAGGCTC+AGG + Chr2:79273820-79273839 MsG0280011083.01.T01:intron 60.0%
CGCGGCTAGAACTGTTGGTG+TGG + Chr2:79270048-79270067 MsG0280011083.01.T01:five_prime_UTR 60.0%
GCAATGGACGCATCGCGCAT+AGG + Chr2:79271105-79271124 MsG0280011083.01.T01:intron 60.0%
GCCTATTAAGCCAGTCGGGC+CGG + Chr2:79273492-79273511 MsG0280011083.01.T01:intron 60.0%
GCTAGCGCGGCTAGAACTGT+TGG + Chr2:79270043-79270062 MsG0280011083.01.T01:five_prime_UTR 60.0%
GGCTTGGGCCTTACAAAGCC+CGG + Chr2:79273866-79273885 MsG0280011083.01.T01:intron 60.0%
GGGGTGGAAATAGGCTAGGC+CGG - Chr2:79273892-79273911 None:intergenic 60.0%
TAAACGAGCTGGGCCGAGCT+AGG - Chr2:79273401-79273420 None:intergenic 60.0%
TGGAAATAGGCTAGGCCGGC+CGG - Chr2:79273888-79273907 None:intergenic 60.0%
TGGCCTGTTCCCACCCCTAA+GGG - Chr2:79273340-79273359 None:intergenic 60.0%
! GGCTTTGTAAGGCCCAAGCC+TGG - Chr2:79273866-79273885 None:intergenic 60.0%
AACAGGCCAGGCCGTCGACA+GGG + Chr2:79273351-79273370 MsG0280011083.01.T01:intron 65.0%
AGGCCATAGGCCCCTGTCGA+CGG - Chr2:79273365-79273384 None:intergenic 65.0%
CGACGGCGGGAGAGAGTGAT+TGG - Chr2:79269923-79269942 None:intergenic 65.0%
CGGCGGGAGAGAGTGATTGG+TGG - Chr2:79269920-79269939 None:intergenic 65.0%
CTGGCCTGTTCCCACCCCTA+AGG - Chr2:79273341-79273360 None:intergenic 65.0%
CTTAGGGGTGGGAACAGGCC+AGG + Chr2:79273339-79273358 MsG0280011083.01.T01:intron 65.0%
GCTTAATAGGCCGGCCCGAC+TGG - Chr2:79273505-79273524 None:intergenic 65.0%
GGAAATAGGCTAGGCCGGCC+GGG - Chr2:79273887-79273906 None:intergenic 65.0%
TCGTCGTCTCTCCGCCGCAA+CGG + Chr2:79269940-79269959 MsG0280011083.01.T01:five_prime_UTR 65.0%
TGGCCCTTAGGGGTGGGAAC+AGG + Chr2:79273334-79273353 MsG0280011083.01.T01:intron 65.0%
TGGGCCTTACAAAGCCCGGC+CGG + Chr2:79273870-79273889 MsG0280011083.01.T01:intron 65.0%
TTGCGGCGGAGAGACGACGA+CGG - Chr2:79269940-79269959 None:intergenic 65.0%
! TAGGCCGGCCGGGCTTTGTA+AGG - Chr2:79273877-79273896 None:intergenic 65.0%
!! GCCGGCCCGACTGGCTTAAT+AGG - Chr2:79273496-79273515 None:intergenic 65.0%
ACAGGCCAGGCCGTCGACAG+GGG + Chr2:79273352-79273371 MsG0280011083.01.T01:intron 70.0%
AGGCCGTCGACAGGGGCCTA+TGG + Chr2:79273359-79273378 MsG0280011083.01.T01:intron 70.0%
ATAGGCCCCTGTCGACGGCC+TGG - Chr2:79273360-79273379 None:intergenic 70.0%
GAACAGGCCAGGCCGTCGAC+AGG + Chr2:79273350-79273369 MsG0280011083.01.T01:intron 70.0%
ACGCCGCGGCTCGACCGTTG+CGG - Chr2:79269957-79269976 None:intergenic 75.0%
CGGCGGAGAGACGACGACGG+CGG - Chr2:79269937-79269956 None:intergenic 75.0%
GGCGGAGAGACGACGACGGC+GGG - Chr2:79269936-79269955 None:intergenic 75.0%
! CCGCCGCAACGGTCGAGCCG+CGG + Chr2:79269951-79269970 MsG0280011083.01.T01:five_prime_UTR 80.0%
! CCGCGGCTCGACCGTTGCGG+CGG - Chr2:79269954-79269973 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr2 gene 79269797 79274816 79269797 ID=MsG0280011083.01;Name=MsG0280011083.01
Chr2 mRNA 79269797 79274816 79269797 ID=MsG0280011083.01.T01;Parent=MsG0280011083.01;Name=MsG0280011083.01.T01;_AED=0.26;_eAED=0.26;_QI=282|1|1|1|0.66|0.57|7|350|377
Chr2 exon 79269797 79270210 79269797 ID=MsG0280011083.01.T01:exon:21362;Parent=MsG0280011083.01.T01
Chr2 exon 79271674 79271886 79271674 ID=MsG0280011083.01.T01:exon:21363;Parent=MsG0280011083.01.T01
Chr2 exon 79272189 79272329 79272189 ID=MsG0280011083.01.T01:exon:21364;Parent=MsG0280011083.01.T01
Chr2 exon 79272720 79272839 79272720 ID=MsG0280011083.01.T01:exon:21365;Parent=MsG0280011083.01.T01
Chr2 exon 79272933 79273019 79272933 ID=MsG0280011083.01.T01:exon:21366;Parent=MsG0280011083.01.T01
Chr2 exon 79273939 79274385 79273939 ID=MsG0280011083.01.T01:exon:21367;Parent=MsG0280011083.01.T01
Chr2 exon 79274473 79274816 79274473 ID=MsG0280011083.01.T01:exon:21368;Parent=MsG0280011083.01.T01
Chr2 five_prime_UTR 79269797 79270078 79269797 ID=MsG0280011083.01.T01:five_prime_utr;Parent=MsG0280011083.01.T01
Chr2 CDS 79270079 79270210 79270079 ID=MsG0280011083.01.T01:cds;Parent=MsG0280011083.01.T01
Chr2 CDS 79271674 79271886 79271674 ID=MsG0280011083.01.T01:cds;Parent=MsG0280011083.01.T01
Chr2 CDS 79272189 79272329 79272189 ID=MsG0280011083.01.T01:cds;Parent=MsG0280011083.01.T01
Chr2 CDS 79272720 79272839 79272720 ID=MsG0280011083.01.T01:cds;Parent=MsG0280011083.01.T01
Chr2 CDS 79272933 79273019 79272933 ID=MsG0280011083.01.T01:cds;Parent=MsG0280011083.01.T01
Chr2 CDS 79273939 79274379 79273939 ID=MsG0280011083.01.T01:cds;Parent=MsG0280011083.01.T01
Chr2 three_prime_UTR 79274380 79274385 79274380 ID=MsG0280011083.01.T01:three_prime_utr;Parent=MsG0280011083.01.T01
Chr2 three_prime_UTR 79274473 79274816 79274473 ID=MsG0280011083.01.T01:three_prime_utr;Parent=MsG0280011083.01.T01
Gene Sequence

>MsG0280011083.01.T01

ATGAACTTGCATTTGCTTGGGATCTTTTTCCGCCTATTCATCGGTTTCTTATTGTGCTGTTATTGGTGTTGCTGCTGCTCAGTCCAAAAGGATCGAGAGATTTTCAATCTTAAGAAATCCGTTGAGCTTAGGGATCAGCTGTTATCAAGCATGCAGGAGAAGCTTGACAATCTTTGTGAGCAGTTTAACAATTCTAAAGAGAACACAGTTGCTGCTATCAAGAAGTTATCCACCAAGGACGGAGAATTGCAATTAGATGAAACATTTGGCTCTGAGCGAATTAAGTTTGTTGATTGCGGTTGTTGGCATTGTGATGAACACTCTTCCTTCTGTAATGAATATATGCAGGGTGCCTTGAGTAGAAGAGCCTCCAGTGGAAATGAGGTCCTCCAATATAAGTCACCCTTCTCTAATGACCAAGAGGAGAGAAGAATGTCTGGCTTGTCGGATTTGGCTTCAAGTGTCACATCTGCTGCTGATATCCAGTTTAACAACTTGGCTGTAGAACAAGATGTTTATAATCTTAAGAGGGACTGTGATGAGAAGGAGACCACAATAAAAGAGCTGACCAATCTGCTAAACTCTTCTGAGGTTGCTAATAGCAAGAGAGTTTCTGAATTAGAAGACATTATACGGAGGAAGAATACAACAATTTCAAAACTAAAGAAGGATTTGGTTGTTCTGGAACAAAAGGTTATGCAGCTTTCAAGGCTTCGTCGACCATCCTTCTCTGCAAGTATTCCAAATGAAATTCAGCTGCCACAAATGAGAGATAACCTCATTTATGATATGGACAGCACCACTAGCCCCTCATCTTCTGATTCTGATAGTTCTCCTGTCAACAATGCACAAGATCTTCCTGTTGATGTCATTCTACCAACCAAGAATTCTGAATCTACAATTGATCAGATATCTACGCCAGCAAAAATCTTAAATTCGTCAGGGAGACTCATTGAACGCCGCTCGAAATTTCAATCCGCTAGTCCTCTTAAAGAAATTCCTTCTTATCAGAAATCTAATGCAGCTTCTTCTTCGAGCCAAAAACAATTGTCACCTCGTAAGGACTTAAAAAAGAGTAGAAGACGATCTCTCAATGGAACTAAGAGTGCGAGTGCAAATAAGAGATGGGTTTAG

Protein sequence

>MsG0280011083.01.T01

MNLHLLGIFFRLFIGFLLCCYWCCCCSVQKDREIFNLKKSVELRDQLLSSMQEKLDNLCEQFNNSKENTVAAIKKLSTKDGELQLDETFGSERIKFVDCGCWHCDEHSSFCNEYMQGALSRRASSGNEVLQYKSPFSNDQEERRMSGLSDLASSVTSAADIQFNNLAVEQDVYNLKRDCDEKETTIKELTNLLNSSEVANSKRVSELEDIIRRKNTTISKLKKDLVVLEQKVMQLSRLRRPSFSASIPNEIQLPQMRDNLIYDMDSTTSPSSSDSDSSPVNNAQDLPVDVILPTKNSESTIDQISTPAKILNSSGRLIERRSKFQSASPLKEIPSYQKSNAASSSSQKQLSPRKDLKKSRRRSLNGTKSASANKRWV*