Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023679.01.T01 | XP_013447183.1 | 96.087 | 230 | 9 | 0 | 1 | 230 | 1 | 230 | 4.69E-163 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023679.01.T01 | Q499B3 | 34.459 | 148 | 85 | 3 | 83 | 228 | 334 | 471 | 4.34E-19 | 89 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023679.01.T01 | A0A072U5T9 | 96.087 | 230 | 9 | 0 | 1 | 230 | 1 | 230 | 2.24e-163 | 459 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047815.01 | MsG0480023679.01 | 0.854282 | 1.365195e-61 | 3.033622e-58 |
| MsG0080048258.01 | MsG0480023679.01 | 0.819438 | 1.161317e-52 | 8.936663e-50 |
| MsG0080048775.01 | MsG0480023679.01 | 0.814526 | 1.473146e-51 | 9.908592e-49 |
| MsG0180001293.01 | MsG0480023679.01 | 0.821150 | 4.705966e-53 | 3.798013e-50 |
| MsG0180001719.01 | MsG0480023679.01 | 0.827679 | 1.369707e-54 | 1.331563e-51 |
| MsG0180002218.01 | MsG0480023679.01 | 0.840384 | 8.980802e-58 | 1.277178e-54 |
| MsG0180002397.01 | MsG0480023679.01 | 0.817214 | 3.703233e-52 | 2.680399e-49 |
| MsG0180003857.01 | MsG0480023679.01 | 0.844185 | 8.840589e-59 | 1.416098e-55 |
| MsG0180004120.01 | MsG0480023679.01 | 0.820140 | 8.028007e-53 | 6.300467e-50 |
| MsG0180004185.01 | MsG0480023679.01 | 0.825512 | 4.500891e-54 | 4.111077e-51 |
| MsG0180004299.01 | MsG0480023679.01 | 0.821542 | 3.820025e-53 | 3.116889e-50 |
| MsG0180004538.01 | MsG0480023679.01 | 0.860539 | 1.925524e-63 | 5.281646e-60 |
| MsG0180004583.01 | MsG0480023679.01 | 0.859441 | 4.127495e-63 | 1.090232e-59 |
| MsG0180004835.01 | MsG0480023679.01 | 0.819797 | 9.617644e-53 | 7.475993e-50 |
| MsG0180004995.01 | MsG0480023679.01 | 0.835093 | 2.051053e-56 | 2.482012e-53 |
| MsG0180005048.01 | MsG0480023679.01 | 0.842737 | 2.153714e-58 | 3.295796e-55 |
| MsG0180005655.01 | MsG0480023679.01 | 0.804279 | 2.331646e-49 | 1.197277e-46 |
| MsG0180006133.01 | MsG0480023679.01 | 0.839490 | 1.535833e-57 | 2.124408e-54 |
| MsG0280011083.01 | MsG0480023679.01 | 0.804643 | 1.957262e-49 | 1.014527e-46 |
| MsG0380012956.01 | MsG0480023679.01 | 0.842297 | 2.817776e-58 | 4.253717e-55 |
| MsG0380014542.01 | MsG0480023679.01 | 0.849990 | 2.267522e-60 | 4.376917e-57 |
| MsG0380014544.01 | MsG0480023679.01 | 0.801200 | 1.007127e-48 | 4.780951e-46 |
| MsG0380014666.01 | MsG0480023679.01 | 0.851776 | 7.121373e-61 | 1.456965e-57 |
| MsG0480018785.01 | MsG0480023679.01 | 0.820923 | 5.306960e-53 | 4.256248e-50 |
| MsG0480020398.01 | MsG0480023679.01 | 0.819691 | 1.016592e-52 | 7.878353e-50 |
| MsG0480020921.01 | MsG0480023679.01 | 0.822053 | 2.909580e-53 | 2.408580e-50 |
| MsG0480020926.01 | MsG0480023679.01 | 0.820493 | 6.662643e-53 | 5.279822e-50 |
| MsG0480021100.01 | MsG0480023679.01 | 0.868149 | 8.093151e-66 | 2.897424e-62 |
| MsG0480021301.01 | MsG0480023679.01 | 0.834027 | 3.800463e-56 | 4.454716e-53 |
| MsG0480021456.01 | MsG0480023679.01 | 0.809890 | 1.512636e-50 | 8.987909e-48 |
| MsG0480021773.01 | MsG0480023679.01 | 0.859782 | 3.258109e-63 | 8.707427e-60 |
| MsG0480021902.01 | MsG0480023679.01 | 0.871002 | 9.521831e-67 | 3.780193e-63 |
| MsG0480022307.01 | MsG0480023679.01 | 0.851242 | 1.008161e-60 | 2.027768e-57 |
| MsG0480022378.01 | MsG0480023679.01 | 0.825815 | 3.814778e-54 | 3.514847e-51 |
| MsG0480022784.01 | MsG0480023679.01 | 0.867973 | 9.216499e-66 | 3.278512e-62 |
| MsG0480022991.01 | MsG0480023679.01 | 0.802443 | 5.597343e-49 | 2.742214e-46 |
| MsG0480023003.01 | MsG0480023679.01 | 0.872877 | 2.268583e-67 | 9.644879e-64 |
| MsG0480023424.01 | MsG0480023679.01 | 0.835241 | 1.881247e-56 | 2.287177e-53 |
| MsG0480023426.01 | MsG0480023679.01 | 0.862838 | 3.816191e-64 | 1.133370e-60 |
| MsG0480023428.01 | MsG0480023679.01 | 0.816775 | 4.647814e-52 | 3.323850e-49 |
| MsG0480023653.01 | MsG0480023679.01 | 0.811736 | 6.031105e-51 | 3.762823e-48 |
| MsG0480023679.01 | MsG0480023706.01 | 0.829398 | 5.263391e-55 | 5.380934e-52 |
| MsG0480023679.01 | MsG0480023842.01 | 0.815824 | 7.584696e-52 | 5.284741e-49 |
| MsG0480023679.01 | MsG0580024276.01 | 0.828624 | 8.105582e-55 | 8.100370e-52 |
| MsG0480023679.01 | MsG0580024742.01 | 0.817494 | 3.202662e-52 | 2.336006e-49 |
| MsG0480023679.01 | MsG0580024787.01 | 0.844898 | 5.681824e-59 | 9.306584e-56 |
| MsG0480023679.01 | MsG0580025177.01 | 0.802014 | 6.857835e-49 | 3.323205e-46 |
| MsG0480023679.01 | MsG0580025186.01 | 0.855985 | 4.367514e-62 | 1.026828e-58 |
| MsG0480023679.01 | MsG0580025504.01 | 0.850571 | 1.557660e-60 | 3.064408e-57 |
| MsG0480023679.01 | MsG0580025506.01 | 0.812096 | 5.035000e-51 | 3.171877e-48 |
| MsG0480023679.01 | MsG0580025775.01 | 0.804255 | 2.358321e-49 | 1.210194e-46 |
| MsG0480023679.01 | MsG0580028923.01 | 0.837637 | 4.622741e-57 | 6.042230e-54 |
| MsG0480023679.01 | MsG0580028927.01 | 0.809146 | 2.185403e-50 | 1.273192e-47 |
| MsG0480023679.01 | MsG0580028955.01 | 0.841486 | 4.615203e-58 | 6.792098e-55 |
| MsG0480023679.01 | MsG0580029591.01 | 0.824404 | 8.221014e-54 | 7.274193e-51 |
| MsG0480023679.01 | MsG0680035350.01 | 0.840786 | 7.050142e-58 | 1.015153e-54 |
| MsG0480023679.01 | MsG0680035776.01 | 0.815550 | 8.729816e-52 | 6.037257e-49 |
| MsG0480023679.01 | MsG0680035792.01 | 0.811071 | 8.410445e-51 | 5.155989e-48 |
| MsG0480023679.01 | MsG0780036534.01 | 0.823686 | 1.212122e-53 | 1.051140e-50 |
| MsG0480023679.01 | MsG0780037741.01 | 0.812366 | 4.396603e-51 | 2.790077e-48 |
| MsG0480023679.01 | MsG0780038402.01 | 0.837710 | 4.425752e-57 | 5.798007e-54 |
| MsG0480023679.01 | MsG0780038736.01 | 0.873293 | 1.644951e-67 | 7.101112e-64 |
| MsG0480023679.01 | MsG0780040620.01 | 0.863164 | 3.026653e-64 | 9.087906e-61 |
| MsG0480023679.01 | MsG0780040641.01 | 0.865522 | 5.557967e-65 | 1.813734e-61 |
| MsG0480023679.01 | MsG0780040899.01 | 0.813122 | 3.002987e-51 | 1.944124e-48 |
| MsG0480023679.01 | MsG0780041008.01 | 0.816270 | 6.028555e-52 | 4.252390e-49 |
| MsG0480023679.01 | MsG0780041273.01 | 0.835033 | 2.123870e-56 | 2.565627e-53 |
| MsG0480023679.01 | MsG0780041359.01 | 0.870825 | 1.088992e-66 | 4.295884e-63 |
| MsG0480023679.01 | MsG0780041546.01 | 0.820801 | 5.659844e-53 | 4.523778e-50 |
| MsG0480023679.01 | MsG0880043684.01 | 0.812826 | 3.487002e-51 | 2.239690e-48 |
| MsG0480023679.01 | MsG0880043752.01 | 0.839473 | 1.552062e-57 | 2.145668e-54 |
| MsG0480023679.01 | MsG0880044437.01 | 0.810510 | 1.112160e-50 | 6.716662e-48 |
| MsG0480023679.01 | MsG0880045612.01 | 0.850381 | 1.762206e-60 | 3.445299e-57 |
| MsG0480023679.01 | MsG0880045647.01 | 0.854304 | 1.345673e-61 | 2.992168e-58 |
| MsG0480023679.01 | MsG0880045879.01 | 0.814982 | 1.167614e-51 | 7.950286e-49 |
| MsG0480023679.01 | MsG0880046529.01 | 0.801927 | 7.147261e-49 | 3.455779e-46 |
| MsG0480023679.01 | MsG0880046646.01 | 0.823040 | 1.715176e-53 | 1.460462e-50 |
| MsG0480023679.01 | MsG0880046904.01 | 0.876235 | 1.640770e-68 | 7.893573e-65 |
| MsG0480023679.01 | MsG0880046905.01 | 0.866867 | 2.083194e-65 | 7.128504e-62 |
| MsG0480023679.01 | MsG0880047649.01 | 0.861712 | 8.462723e-64 | 2.416079e-60 |
| MsG0380015090.01 | MsG0480023679.01 | 0.848715 | 5.134955e-60 | 9.509328e-57 |
| MsG0380015340.01 | MsG0480023679.01 | 0.853580 | 2.175962e-61 | 4.724335e-58 |
| MsG0380015394.01 | MsG0480023679.01 | 0.813420 | 2.582788e-51 | 1.685878e-48 |
| MsG0380015954.01 | MsG0480023679.01 | 0.805487 | 1.303457e-49 | 6.904757e-47 |
| MsG0380016027.01 | MsG0480023679.01 | 0.822936 | 1.813742e-53 | 1.539781e-50 |
| MsG0380016091.01 | MsG0480023679.01 | 0.822109 | 2.823724e-53 | 2.341305e-50 |
| MsG0380016165.01 | MsG0480023679.01 | 0.808217 | 3.452582e-50 | 1.962729e-47 |
| MsG0380016217.01 | MsG0480023679.01 | 0.806597 | 7.615158e-50 | 4.150051e-47 |
| MsG0380016225.01 | MsG0480023679.01 | 0.821799 | 3.332297e-53 | 2.738766e-50 |
| MsG0380017605.01 | MsG0480023679.01 | 0.829250 | 5.718727e-55 | 5.821385e-52 |
| MsG0380017632.01 | MsG0480023679.01 | 0.817412 | 3.341764e-52 | 2.432010e-49 |
| MsG0380018055.01 | MsG0480023679.01 | 0.823199 | 1.574792e-53 | 1.346834e-50 |
| MsG0480018228.01 | MsG0480023679.01 | 0.825862 | 3.718153e-54 | 3.430510e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023679.01.T01 | MTR_8g099380 | 96.087 | 230 | 9 | 0 | 1 | 230 | 1 | 230 | 5.68e-167 | 459 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023679.01.T01 | AT5G41850 | 69.507 | 223 | 63 | 3 | 7 | 228 | 2 | 220 | 1.07e-113 | 325 |
Find 63 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAAGATTAAACCTTTAA+TGG | 0.116000 | 4:+88465977 | None:intergenic |
| ATGCTTGGGCTACCCATTAA+AGG | 0.224197 | 4:-88465990 | MsG0480023679.01.T01:intron |
| CCATTGTTCCAGGGAATTAA+TGG | 0.232308 | 4:-88465159 | MsG0480023679.01.T01:intron |
| TCATCATCCTTCAAGAGATT+TGG | 0.295222 | 4:+88464697 | None:intergenic |
| CCTTGAACCCATTGATTTGC+CGG | 0.305697 | 4:+88466186 | None:intergenic |
| GTGCTCCTTCCTCTTCTGAT+TGG | 0.352949 | 4:-88466884 | MsG0480023679.01.T01:CDS |
| TTCATTTCCAAATCTCTTGA+AGG | 0.365586 | 4:-88464704 | MsG0480023679.01.T01:CDS |
| GGGAATTAATGGTGCGGTTA+GGG | 0.366007 | 4:-88465148 | MsG0480023679.01.T01:CDS |
| ATAAAGATTAAACCTTTAAT+GGG | 0.373740 | 4:+88465978 | None:intergenic |
| AGGGAATTAATGGTGCGGTT+AGG | 0.374671 | 4:-88465149 | MsG0480023679.01.T01:CDS |
| TGTTTCCGCTGTACTATGCT+TGG | 0.395576 | 4:-88466005 | MsG0480023679.01.T01:CDS |
| CGTACTGGCCGGCAAATCAA+TGG | 0.407387 | 4:-88466194 | MsG0480023679.01.T01:CDS |
| CGCTTTCATCTTCTTTCGAG+TGG | 0.442942 | 4:+88464850 | None:intergenic |
| CCCTGGTCATCCTCTCGTAC+TGG | 0.456451 | 4:-88466209 | MsG0480023679.01.T01:CDS |
| AATGAGCTGCATGTCATTGA+TGG | 0.457649 | 4:-88464824 | MsG0480023679.01.T01:CDS |
| GTTTCCGCTGTACTATGCTT+GGG | 0.459114 | 4:-88466004 | MsG0480023679.01.T01:CDS |
| CCTCTTCTGATTGGATGCTA+AGG | 0.463132 | 4:-88466875 | MsG0480023679.01.T01:intron |
| GTTATCTTCGCTCACGGTGC+CGG | 0.468658 | 4:-88466906 | MsG0480023679.01.T01:CDS |
| TGACGACGTCGCTTTGCAGC+AGG | 0.475549 | 4:+88466984 | None:intergenic |
| GACAACATCAGTAGCATGTA+AGG | 0.476523 | 4:+88466739 | None:intergenic |
| TCTACCTGGACAAACATTGT+AGG | 0.478984 | 4:+88465099 | None:intergenic |
| CCGGCAAATCAATGGGTTCA+AGG | 0.480096 | 4:-88466186 | MsG0480023679.01.T01:intron |
| TGTCATTTGCTAGACATGTC+TGG | 0.481670 | 4:-88466313 | MsG0480023679.01.T01:intron |
| GCGGCGTTGATGATTCAATC+TGG | 0.483143 | 4:+88466949 | None:intergenic |
| TTATTGTAGAGTTGGATGTA+TGG | 0.486088 | 4:-88466050 | MsG0480023679.01.T01:intron |
| CTTGAGCAGGGCAGCAAGGA+TGG | 0.491768 | 4:-88464899 | MsG0480023679.01.T01:intron |
| TCCTCCTAAGGCAGAAAAGT+TGG | 0.503669 | 4:-88466275 | MsG0480023679.01.T01:CDS |
| AGTTCCTACAATGTTTGTCC+AGG | 0.535493 | 4:-88465103 | MsG0480023679.01.T01:intron |
| TGGATGTATGGTGGCTAGCA+TGG | 0.536453 | 4:-88466038 | MsG0480023679.01.T01:CDS |
| TAGATGGAAGAGTATGTTGA+AGG | 0.539873 | 4:-88466765 | MsG0480023679.01.T01:CDS |
| GTACTGGCCGGCAAATCAAT+GGG | 0.541862 | 4:-88466193 | MsG0480023679.01.T01:CDS |
| TCCTAAGGCAGAAAAGTTGG+TGG | 0.544615 | 4:-88466272 | MsG0480023679.01.T01:CDS |
| TTTGGAAATGAAAGCGGCAA+TGG | 0.545771 | 4:+88464715 | None:intergenic |
| GGCCTTCACAGCAGCAACTT+CGG | 0.546141 | 4:+88464736 | None:intergenic |
| AAGAAGCATCTGCAAGCAAA+GGG | 0.546181 | 4:-88464776 | MsG0480023679.01.T01:CDS |
| GCCAGTACGAGAGGATGACC+AGG | 0.550318 | 4:+88466208 | None:intergenic |
| ATCAGAAGAGGAAGGAGCAC+CGG | 0.562808 | 4:+88466887 | None:intergenic |
| TGCAGCAGGCAATGAATCCA+TGG | 0.567186 | 4:+88466998 | None:intergenic |
| GCCGCTAAAACAACTGTCAC+CGG | 0.570168 | 4:-88466931 | MsG0480023679.01.T01:CDS |
| GCAAGCAAAGGGTTCCACTC+AGG | 0.581589 | 4:-88464765 | MsG0480023679.01.T01:CDS |
| GGTCATCCTCTCGTACTGGC+CGG | 0.583683 | 4:-88466205 | MsG0480023679.01.T01:CDS |
| GAAACTGCAACTAAGTTCCC+TGG | 0.588797 | 4:-88466226 | MsG0480023679.01.T01:CDS |
| TAAGAAGCATCTGCAAGCAA+AGG | 0.590904 | 4:-88464777 | MsG0480023679.01.T01:CDS |
| TTGTAGAGTTGGATGTATGG+TGG | 0.595979 | 4:-88466047 | MsG0480023679.01.T01:intron |
| TCTTACCAACCTTAAAAGAG+TGG | 0.598472 | 4:+88464795 | None:intergenic |
| AAGAGATTTGGAAATGAAAG+CGG | 0.606643 | 4:+88464709 | None:intergenic |
| CCGGTGGTTATCTTCGCTCA+CGG | 0.607459 | 4:-88466912 | MsG0480023679.01.T01:CDS |
| GTGGTCTCTAACTTCTCAAG+TGG | 0.615459 | 4:+88464869 | None:intergenic |
| AGCCGAAGTTGCTGCTGTGA+AGG | 0.616142 | 4:-88464738 | MsG0480023679.01.T01:CDS |
| GATTTGCCGGCCAGTACGAG+AGG | 0.620100 | 4:+88466199 | None:intergenic |
| CCTTAGCATCCAATCAGAAG+AGG | 0.629184 | 4:+88466875 | None:intergenic |
| GTTTCATTCACATATCGTGA+AGG | 0.636747 | 4:-88466248 | MsG0480023679.01.T01:CDS |
| AGCATCCAATCAGAAGAGGA+AGG | 0.643596 | 4:+88466879 | None:intergenic |
| GTGTCTTGAGCAGGGCAGCA+AGG | 0.654400 | 4:-88464903 | MsG0480023679.01.T01:intron |
| CATTTGCTAGACATGTCTGG+TGG | 0.657074 | 4:-88466310 | MsG0480023679.01.T01:intron |
| CCGTGAGCGAAGATAACCAC+CGG | 0.665893 | 4:+88466912 | None:intergenic |
| ATTTGCTAGACATGTCTGGT+GGG | 0.692456 | 4:-88466309 | MsG0480023679.01.T01:intron |
| GAGCTGCATGTCATTGATGG+TGG | 0.695412 | 4:-88464821 | MsG0480023679.01.T01:CDS |
| GTTCCAGGGAATTAATGGTG+CGG | 0.699484 | 4:-88465154 | MsG0480023679.01.T01:intron |
| GCTAAAACAACTGTCACCGG+TGG | 0.706372 | 4:-88466928 | MsG0480023679.01.T01:CDS |
| AACTTCGGCTTCATCCTGAG+TGG | 0.718969 | 4:+88464751 | None:intergenic |
| CCAGTACGAGAGGATGACCA+GGG | 0.741907 | 4:+88466209 | None:intergenic |
| GTAGCCCAAGCATAGTACAG+CGG | 0.776936 | 4:+88466000 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTGAAGTTTTAATT+TGG | - | Chr4:88465553-88465572 | MsG0480023679.01.T01:intron | 10.0% |
| !! | AAACTTTAATTATCAACAAA+GGG | + | Chr4:88466135-88466154 | None:intergenic | 15.0% |
| !! | AAATGAATGAATAAAGAAAA+TGG | + | Chr4:88464849-88464868 | None:intergenic | 15.0% |
| !! | ATAAAGATTAAACCTTTAAT+GGG | + | Chr4:88465721-88465740 | None:intergenic | 15.0% |
| !! | TAAACTTTAATTATCAACAA+AGG | + | Chr4:88466136-88466155 | None:intergenic | 15.0% |
| !! | TGTTGAATCTTATTATAATT+AGG | - | Chr4:88464892-88464911 | MsG0480023679.01.T01:CDS | 15.0% |
| !! | AAAAAATCAACGAACTTATA+AGG | + | Chr4:88465238-88465257 | None:intergenic | 20.0% |
| !! | ATAAGTTAAATGAAATGGAT+TGG | + | Chr4:88465016-88465035 | None:intergenic | 20.0% |
| !! | CATAAAGATTAAACCTTTAA+TGG | + | Chr4:88465722-88465741 | None:intergenic | 20.0% |
| !! | GAATGATAAGTTAAATGAAA+TGG | + | Chr4:88465021-88465040 | None:intergenic | 20.0% |
| !! | TTTCTATAGCATTTATTCAT+AGG | - | Chr4:88466198-88466217 | MsG0480023679.01.T01:CDS | 20.0% |
| !!! | ATTTTCAACAAAATCACAAA+TGG | + | Chr4:88465876-88465895 | None:intergenic | 20.0% |
| !!! | CATTTATTTTATTGTAGAGT+TGG | - | Chr4:88465638-88465657 | MsG0480023679.01.T01:intron | 20.0% |
| !!! | TGCTAGCAATAATTTTTATT+AGG | + | Chr4:88465603-88465622 | None:intergenic | 20.0% |
| !!! | TTCGTTGATTTTTTTTATCT+AGG | - | Chr4:88465244-88465263 | MsG0480023679.01.T01:intron | 20.0% |
| !!! | TTTTCAACAAAATCACAAAT+GGG | + | Chr4:88465875-88465894 | None:intergenic | 20.0% |
| ! | AAGATATCATAGAGATCTTA+TGG | + | Chr4:88465129-88465148 | None:intergenic | 25.0% |
| ! | ACATCAAACAAGTAATCTAA+AGG | + | Chr4:88465327-88465346 | None:intergenic | 25.0% |
| ! | CACTTGTATATTTATCCAAA+CGG | - | Chr4:88465210-88465229 | MsG0480023679.01.T01:intron | 25.0% |
| ! | TTTCAACAAAATCACAAATG+GGG | + | Chr4:88465874-88465893 | None:intergenic | 25.0% |
| !! | GTAATGCACAGATAAATTTT+TGG | - | Chr4:88466748-88466767 | MsG0480023679.01.T01:CDS | 25.0% |
| !!! | TTAAATGAAATGGATTGGAT+TGG | + | Chr4:88465011-88465030 | None:intergenic | 25.0% |
| AAGAGATTTGGAAATGAAAG+CGG | + | Chr4:88466990-88467009 | None:intergenic | 30.0% | |
| ATTACAGAATGTCATACTGA+TGG | + | Chr4:88466733-88466752 | None:intergenic | 30.0% | |
| ATTGATGAAGTTGTCATTCT+TGG | - | Chr4:88466262-88466281 | MsG0480023679.01.T01:CDS | 30.0% | |
| ATTTCCACATATCACATTCT+AGG | + | Chr4:88466031-88466050 | None:intergenic | 30.0% | |
| CAAATTCATTAGATTCGCTT+CGG | + | Chr4:88465365-88465384 | None:intergenic | 30.0% | |
| CATTTATTCATAGGTGAGTT+TGG | - | Chr4:88466207-88466226 | MsG0480023679.01.T01:CDS | 30.0% | |
| GAAACTGTCATTACTACATA+TGG | - | Chr4:88466470-88466489 | MsG0480023679.01.T01:intron | 30.0% | |
| TTATTGTAGAGTTGGATGTA+TGG | - | Chr4:88465646-88465665 | MsG0480023679.01.T01:intron | 30.0% | |
| TTCATTTCCAAATCTCTTGA+AGG | - | Chr4:88466992-88467011 | MsG0480023679.01.T01:CDS | 30.0% | |
| TTTCCACATATCACATTCTA+GGG | + | Chr4:88466030-88466049 | None:intergenic | 30.0% | |
| ! | GTTTTCTGTTCAGAAATTGT+TGG | - | Chr4:88466385-88466404 | MsG0480023679.01.T01:intron | 30.0% |
| ! | TATTTTCTCCATGTGATAGA+TGG | - | Chr4:88464915-88464934 | MsG0480023679.01.T01:intron | 30.0% |
| ! | TTCATACACTGTTAGTCTAT+TGG | - | Chr4:88466681-88466700 | MsG0480023679.01.T01:intron | 30.0% |
| ! | TTTTCCTCTTCATTTCTTCA+TGG | - | Chr4:88466329-88466348 | MsG0480023679.01.T01:intron | 30.0% |
| !! | AAACTAAGATGACTAGCTTA+AGG | + | Chr4:88466233-88466252 | None:intergenic | 30.0% |
| !! | TTAGTTTTCTTAGGGTGTTT+TGG | - | Chr4:88466440-88466459 | MsG0480023679.01.T01:intron | 30.0% |
| !!! | TTGGTGCATTAGTTTTCTTA+GGG | - | Chr4:88466432-88466451 | MsG0480023679.01.T01:intron | 30.0% |
| ACAAAATCACAAATGGGGTA+AGG | + | Chr4:88465869-88465888 | None:intergenic | 35.0% | |
| ACTAACAGTGTATGAAACTG+AGG | + | Chr4:88466677-88466696 | None:intergenic | 35.0% | |
| AGAGCTCTCAAATATGTACT+AGG | - | Chr4:88466294-88466313 | MsG0480023679.01.T01:CDS | 35.0% | |
| ATACTCTTCCATCTATCACA+TGG | + | Chr4:88464926-88464945 | None:intergenic | 35.0% | |
| ATTCGACATCCACTTTAGTT+TGG | - | Chr4:88465894-88465913 | MsG0480023679.01.T01:intron | 35.0% | |
| ATTTCTTCAAACTGTTGGAC+CGG | - | Chr4:88465951-88465970 | MsG0480023679.01.T01:intron | 35.0% | |
| CTTCCATTTCTTCAAACTGT+TGG | - | Chr4:88465946-88465965 | MsG0480023679.01.T01:intron | 35.0% | |
| GATAAGCTGAAAATCAAGGA+TGG | + | Chr4:88465985-88466004 | None:intergenic | 35.0% | |
| GATTGGAAAGAAACTCACAA+GGG | + | Chr4:88464994-88465013 | None:intergenic | 35.0% | |
| GGAAATTGAAAACACATCCA+TGG | + | Chr4:88466712-88466731 | None:intergenic | 35.0% | |
| GTAATCTAAAGGTTCACACT+CGG | + | Chr4:88465316-88465335 | None:intergenic | 35.0% | |
| GTTTCATTCACATATCGTGA+AGG | - | Chr4:88465448-88465467 | MsG0480023679.01.T01:intron | 35.0% | |
| TAGAAAAAGAGAACTCTACC+TGG | + | Chr4:88466614-88466633 | None:intergenic | 35.0% | |
| TCTTACCAACCTTAAAAGAG+TGG | + | Chr4:88466904-88466923 | None:intergenic | 35.0% | |
| TGCAGATAAGCTGAAAATCA+AGG | + | Chr4:88465989-88466008 | None:intergenic | 35.0% | |
| TGGACATATATGTTTGCATG+AGG | - | Chr4:88465573-88465592 | MsG0480023679.01.T01:intron | 35.0% | |
| TTAGTCTATTGGATGAACCA+TGG | - | Chr4:88466692-88466711 | MsG0480023679.01.T01:intron | 35.0% | |
| TTCCACATATCACATTCTAG+GGG | + | Chr4:88466029-88466048 | None:intergenic | 35.0% | |
| ! | AATTTTGTTGCCATTGTTCC+AGG | - | Chr4:88466527-88466546 | MsG0480023679.01.T01:intron | 35.0% |
| ! | ATTTTGTTGCCATTGTTCCA+GGG | - | Chr4:88466528-88466547 | MsG0480023679.01.T01:intron | 35.0% |
| ! | TAGATGGAAGAGTATGTTGA+AGG | - | Chr4:88464931-88464950 | MsG0480023679.01.T01:intron | 35.0% |
| ! | TCTAACTTGTCATTGCAGTA+TGG | - | Chr4:88466630-88466649 | MsG0480023679.01.T01:intron | 35.0% |
| ! | TTCGACATCCACTTTAGTTT+GGG | - | Chr4:88465895-88465914 | MsG0480023679.01.T01:intron | 35.0% |
| !! | TGAAGAAATGGAAGTACTGA+AGG | + | Chr4:88465940-88465959 | None:intergenic | 35.0% |
| !!! | GTTGGTGCATTAGTTTTCTT+AGG | - | Chr4:88466431-88466450 | MsG0480023679.01.T01:intron | 35.0% |
| AATGAGCTGCATGTCATTGA+TGG | - | Chr4:88466872-88466891 | MsG0480023679.01.T01:intron | 40.0% | |
| ACACACACAAGACTAGCATT+AGG | + | Chr4:88466777-88466796 | None:intergenic | 40.0% | |
| AGTTCCTACAATGTTTGTCC+AGG | - | Chr4:88466593-88466612 | MsG0480023679.01.T01:intron | 40.0% | |
| ATCAAGGATGGTTTCATAGC+CGG | + | Chr4:88465973-88465992 | None:intergenic | 40.0% | |
| ATGCCACACTCAAGCAATTA+TGG | - | Chr4:88466409-88466428 | MsG0480023679.01.T01:intron | 40.0% | |
| CAACCATAATTGCTTGAGTG+TGG | + | Chr4:88466415-88466434 | None:intergenic | 40.0% | |
| CAAGCCATGAAGAAATGAAG+AGG | + | Chr4:88466336-88466355 | None:intergenic | 40.0% | |
| CACACTCAAGCAATTATGGT+TGG | - | Chr4:88466413-88466432 | MsG0480023679.01.T01:intron | 40.0% | |
| CCATTAATTCCCTGGAACAA+TGG | + | Chr4:88466540-88466559 | None:intergenic | 40.0% | |
| CCATTGTTCCAGGGAATTAA+TGG | - | Chr4:88466537-88466556 | MsG0480023679.01.T01:intron | 40.0% | |
| GACAACATCAGTAGCATGTA+AGG | + | Chr4:88464960-88464979 | None:intergenic | 40.0% | |
| GACAACTTCATCAATCGAGT+TGG | + | Chr4:88466257-88466276 | None:intergenic | 40.0% | |
| GCACTATCATTTGCACTTGT+TGG | - | Chr4:88466355-88466374 | MsG0480023679.01.T01:intron | 40.0% | |
| GGATTGGAAAGAAACTCACA+AGG | + | Chr4:88464995-88465014 | None:intergenic | 40.0% | |
| GGTCCAACAGTTTGAAGAAA+TGG | + | Chr4:88465952-88465971 | None:intergenic | 40.0% | |
| GTGTTGAAATCCAATGAGTG+TGG | + | Chr4:88466103-88466122 | None:intergenic | 40.0% | |
| TCCAAAGACCCAAACTAAAG+TGG | + | Chr4:88465906-88465925 | None:intergenic | 40.0% | |
| TCTACCTGGACAAACATTGT+AGG | + | Chr4:88466600-88466619 | None:intergenic | 40.0% | |
| TTGTAGAGTTGGATGTATGG+TGG | - | Chr4:88465649-88465668 | MsG0480023679.01.T01:intron | 40.0% | |
| TTTGGAAATGAAAGCGGCAA+TGG | + | Chr4:88466984-88467003 | None:intergenic | 40.0% | |
| ! | ATTTGCTAGACATGTCTGGT+GGG | - | Chr4:88465387-88465406 | MsG0480023679.01.T01:intron | 40.0% |
| ! | TGTCATTTGCTAGACATGTC+TGG | - | Chr4:88465383-88465402 | MsG0480023679.01.T01:intron | 40.0% |
| ! | TTTCTGCCCCTTTTACTTTG+TGG | - | Chr4:88465791-88465810 | MsG0480023679.01.T01:intron | 40.0% |
| !! | AAGAAGCATCTGCAAGCAAA+GGG | - | Chr4:88466920-88466939 | MsG0480023679.01.T01:CDS | 40.0% |
| !! | AGAAATGGAAGTACTGAAGG+TGG | + | Chr4:88465937-88465956 | None:intergenic | 40.0% |
| !! | TAAGAAGCATCTGCAAGCAA+AGG | - | Chr4:88466919-88466938 | MsG0480023679.01.T01:CDS | 40.0% |
| !! | TCCACTTTAGTTTGGGTCTT+TGG | - | Chr4:88465902-88465921 | MsG0480023679.01.T01:intron | 40.0% |
| ACATGTCTGGTGGGAAAAAG+AGG | - | Chr4:88465396-88465415 | MsG0480023679.01.T01:intron | 45.0% | |
| AGCATCCAATCAGAAGAGGA+AGG | + | Chr4:88464820-88464839 | None:intergenic | 45.0% | |
| AGGGAATTAATGGTGCGGTT+AGG | - | Chr4:88466547-88466566 | MsG0480023679.01.T01:intron | 45.0% | |
| ATCGCCGCCACAAAGTAAAA+GGG | + | Chr4:88465801-88465820 | None:intergenic | 45.0% | |
| ATGCTTGGGCTACCCATTAA+AGG | - | Chr4:88465706-88465725 | MsG0480023679.01.T01:intron | 45.0% | |
| CACAAATGGGGTAAGGCATA+TGG | + | Chr4:88465862-88465881 | None:intergenic | 45.0% | |
| CATGTCTGGTGGGAAAAAGA+GGG | - | Chr4:88465397-88465416 | MsG0480023679.01.T01:intron | 45.0% | |
| CCTCTTCTGATTGGATGCTA+AGG | - | Chr4:88464821-88464840 | MsG0480023679.01.T01:CDS | 45.0% | |
| CCTTAGCATCCAATCAGAAG+AGG | + | Chr4:88464824-88464843 | None:intergenic | 45.0% | |
| CGCTTTCATCTTCTTTCGAG+TGG | + | Chr4:88466849-88466868 | None:intergenic | 45.0% | |
| CTCCCCTAGAATGTGATATG+TGG | - | Chr4:88466024-88466043 | MsG0480023679.01.T01:CDS | 45.0% | |
| GAAACTGCAACTAAGTTCCC+TGG | - | Chr4:88465470-88465489 | MsG0480023679.01.T01:intron | 45.0% | |
| GGGAATTAATGGTGCGGTTA+GGG | - | Chr4:88466548-88466567 | MsG0480023679.01.T01:intron | 45.0% | |
| GTGGTCTCTAACTTCTCAAG+TGG | + | Chr4:88466830-88466849 | None:intergenic | 45.0% | |
| GTTCCAGGGAATTAATGGTG+CGG | - | Chr4:88466542-88466561 | MsG0480023679.01.T01:intron | 45.0% | |
| GTTTCCGCTGTACTATGCTT+GGG | - | Chr4:88465692-88465711 | MsG0480023679.01.T01:intron | 45.0% | |
| TAACCGCACCATTAATTCCC+TGG | + | Chr4:88466548-88466567 | None:intergenic | 45.0% | |
| TATCGCCGCCACAAAGTAAA+AGG | + | Chr4:88465802-88465821 | None:intergenic | 45.0% | |
| TCCTAAGGCAGAAAAGTTGG+TGG | - | Chr4:88465424-88465443 | MsG0480023679.01.T01:intron | 45.0% | |
| TCCTCCTAAGGCAGAAAAGT+TGG | - | Chr4:88465421-88465440 | MsG0480023679.01.T01:intron | 45.0% | |
| TCTTGTGTGTGTCTTGAGCA+GGG | - | Chr4:88466785-88466804 | MsG0480023679.01.T01:intron | 45.0% | |
| TGTTTCCGCTGTACTATGCT+TGG | - | Chr4:88465691-88465710 | MsG0480023679.01.T01:intron | 45.0% | |
| TTGCTAAGCTTGTACGTGAG+AGG | + | Chr4:88466065-88466084 | None:intergenic | 45.0% | |
| ! | ACCAACTTTTCTGCCTTAGG+AGG | + | Chr4:88465425-88465444 | None:intergenic | 45.0% |
| ! | CATTTGCTAGACATGTCTGG+TGG | - | Chr4:88465386-88465405 | MsG0480023679.01.T01:intron | 45.0% |
| ! | TCCACCAACTTTTCTGCCTT+AGG | + | Chr4:88465428-88465447 | None:intergenic | 45.0% |
| !! | CCTTGAACCCATTGATTTGC+CGG | + | Chr4:88465513-88465532 | None:intergenic | 45.0% |
| !! | CGAACTTATAAGGCACCGTT+TGG | + | Chr4:88465228-88465247 | None:intergenic | 45.0% |
| !! | TGGTGGTGACCACTCTTTTA+AGG | - | Chr4:88466892-88466911 | MsG0480023679.01.T01:CDS | 45.0% |
| !!! | ACCGGTGACAGTTGTTTTAG+CGG | + | Chr4:88464769-88464788 | None:intergenic | 45.0% |
| !!! | GGTGACCACTCTTTTAAGGT+TGG | - | Chr4:88466896-88466915 | MsG0480023679.01.T01:CDS | 45.0% |
| AACTTCGGCTTCATCCTGAG+TGG | + | Chr4:88466948-88466967 | None:intergenic | 50.0% | |
| GAAAAAGAGGGCTCCTCCTA+AGG | - | Chr4:88465409-88465428 | MsG0480023679.01.T01:intron | 50.0% | |
| GAGCTGCATGTCATTGATGG+TGG | - | Chr4:88466875-88466894 | MsG0480023679.01.T01:intron | 50.0% | |
| GCCGCTAAAACAACTGTCAC+CGG | - | Chr4:88464765-88464784 | MsG0480023679.01.T01:CDS | 50.0% | |
| GCTAAAACAACTGTCACCGG+TGG | - | Chr4:88464768-88464787 | MsG0480023679.01.T01:CDS | 50.0% | |
| GTAGCCCAAGCATAGTACAG+CGG | + | Chr4:88465699-88465718 | None:intergenic | 50.0% | |
| GTCTTGTGTGTGTCTTGAGC+AGG | - | Chr4:88466784-88466803 | MsG0480023679.01.T01:intron | 50.0% | |
| GTGCTCCTTCCTCTTCTGAT+TGG | - | Chr4:88464812-88464831 | MsG0480023679.01.T01:CDS | 50.0% | |
| TCCAATGAGTGTGGCTCAGT+TGG | + | Chr4:88466094-88466113 | None:intergenic | 50.0% | |
| TCGCCGCCACAAAGTAAAAG+GGG | + | Chr4:88465800-88465819 | None:intergenic | 50.0% | |
| TGGATGTATGGTGGCTAGCA+TGG | - | Chr4:88465658-88465677 | MsG0480023679.01.T01:intron | 50.0% | |
| ! | ATCAGAAGAGGAAGGAGCAC+CGG | + | Chr4:88464812-88464831 | None:intergenic | 50.0% |
| ! | CCGGCAAATCAATGGGTTCA+AGG | - | Chr4:88465510-88465529 | MsG0480023679.01.T01:intron | 50.0% |
| ! | CTGCCCCTTTTACTTTGTGG+CGG | - | Chr4:88465794-88465813 | MsG0480023679.01.T01:intron | 50.0% |
| ! | GTACTGGCCGGCAAATCAAT+GGG | - | Chr4:88465503-88465522 | MsG0480023679.01.T01:intron | 50.0% |
| !! | AAGTACTGAAGGTGGCACTG+AGG | + | Chr4:88465929-88465948 | None:intergenic | 50.0% |
| !! | GCGGCGTTGATGATTCAATC+TGG | + | Chr4:88464750-88464769 | None:intergenic | 50.0% |
| AGCCGAAGTTGCTGCTGTGA+AGG | - | Chr4:88466958-88466977 | MsG0480023679.01.T01:CDS | 55.0% | |
| CCAGTACGAGAGGATGACCA+GGG | + | Chr4:88465490-88465509 | None:intergenic | 55.0% | |
| CCGGTGGTTATCTTCGCTCA+CGG | - | Chr4:88464784-88464803 | MsG0480023679.01.T01:CDS | 55.0% | |
| CCGTGAGCGAAGATAACCAC+CGG | + | Chr4:88464787-88464806 | None:intergenic | 55.0% | |
| GCAAGCAAAGGGTTCCACTC+AGG | - | Chr4:88466931-88466950 | MsG0480023679.01.T01:CDS | 55.0% | |
| GCCAACTGAGCCACACTCAT+TGG | - | Chr4:88466090-88466109 | MsG0480023679.01.T01:intron | 55.0% | |
| GGCCTTCACAGCAGCAACTT+CGG | + | Chr4:88466963-88466982 | None:intergenic | 55.0% | |
| GTTATCTTCGCTCACGGTGC+CGG | - | Chr4:88464790-88464809 | MsG0480023679.01.T01:CDS | 55.0% | |
| ! | CGTACTGGCCGGCAAATCAA+TGG | - | Chr4:88465502-88465521 | MsG0480023679.01.T01:intron | 55.0% |
| CCCTGGTCATCCTCTCGTAC+TGG | - | Chr4:88465487-88465506 | MsG0480023679.01.T01:intron | 60.0% | |
| CTTGAGCAGGGCAGCAAGGA+TGG | - | Chr4:88466797-88466816 | MsG0480023679.01.T01:intron | 60.0% | |
| GATTTGCCGGCCAGTACGAG+AGG | + | Chr4:88465500-88465519 | None:intergenic | 60.0% | |
| GCCAGTACGAGAGGATGACC+AGG | + | Chr4:88465491-88465510 | None:intergenic | 60.0% | |
| GTGTCTTGAGCAGGGCAGCA+AGG | - | Chr4:88466793-88466812 | MsG0480023679.01.T01:intron | 60.0% | |
| ! | GGTCATCCTCTCGTACTGGC+CGG | - | Chr4:88465491-88465510 | MsG0480023679.01.T01:intron | 60.0% |
| ! | TGACGACGTCGCTTTGCAGC+AGG | + | Chr4:88464715-88464734 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 88464700 | 88467018 | 88464700 | ID=MsG0480023679.01;Name=MsG0480023679.01 |
| Chr4 | mRNA | 88464700 | 88467018 | 88464700 | ID=MsG0480023679.01.T01;Parent=MsG0480023679.01;Name=MsG0480023679.01.T01;_AED=0.40;_eAED=0.41;_QI=0|0|0|1|1|1|6|0|230 |
| Chr4 | exon | 88466876 | 88467018 | 88466876 | ID=MsG0480023679.01.T01:exon:12405;Parent=MsG0480023679.01.T01 |
| Chr4 | exon | 88466723 | 88466784 | 88466723 | ID=MsG0480023679.01.T01:exon:12404;Parent=MsG0480023679.01.T01 |
| Chr4 | exon | 88466187 | 88466322 | 88466187 | ID=MsG0480023679.01.T01:exon:12403;Parent=MsG0480023679.01.T01 |
| Chr4 | exon | 88465991 | 88466063 | 88465991 | ID=MsG0480023679.01.T01:exon:12402;Parent=MsG0480023679.01.T01 |
| Chr4 | exon | 88465104 | 88465169 | 88465104 | ID=MsG0480023679.01.T01:exon:12401;Parent=MsG0480023679.01.T01 |
| Chr4 | exon | 88464700 | 88464912 | 88464700 | ID=MsG0480023679.01.T01:exon:12400;Parent=MsG0480023679.01.T01 |
| Chr4 | CDS | 88466876 | 88467018 | 88466876 | ID=MsG0480023679.01.T01:cds;Parent=MsG0480023679.01.T01 |
| Chr4 | CDS | 88466723 | 88466784 | 88466723 | ID=MsG0480023679.01.T01:cds;Parent=MsG0480023679.01.T01 |
| Chr4 | CDS | 88466187 | 88466322 | 88466187 | ID=MsG0480023679.01.T01:cds;Parent=MsG0480023679.01.T01 |
| Chr4 | CDS | 88465991 | 88466063 | 88465991 | ID=MsG0480023679.01.T01:cds;Parent=MsG0480023679.01.T01 |
| Chr4 | CDS | 88465104 | 88465169 | 88465104 | ID=MsG0480023679.01.T01:cds;Parent=MsG0480023679.01.T01 |
| Chr4 | CDS | 88464700 | 88464912 | 88464700 | ID=MsG0480023679.01.T01:cds;Parent=MsG0480023679.01.T01 |
| Gene Sequence |
| Protein sequence |
