Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380015090.01.T01 | RHN67997.1 | 99.038 | 104 | 1 | 0 | 38 | 141 | 66 | 169 | 2.17E-66 | 210 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380015090.01.T01 | Q9STG6 | 91.346 | 104 | 9 | 0 | 38 | 141 | 45 | 148 | 1.66E-63 | 195 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380015090.01.T01 | A0A396IYG6 | 99.038 | 104 | 1 | 0 | 38 | 141 | 66 | 169 | 1.03e-66 | 210 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080047815.01 | MsG0380015090.01 | 0.874231 | 7.940302e-68 | 3.546878e-64 |
MsG0080048258.01 | MsG0380015090.01 | 0.847208 | 1.337118e-59 | 2.359097e-56 |
MsG0080048775.01 | MsG0380015090.01 | 0.843513 | 1.337689e-58 | 2.097881e-55 |
MsG0080048781.01 | MsG0380015090.01 | 0.825468 | 4.611166e-54 | 4.206319e-51 |
MsG0080048797.01 | MsG0380015090.01 | 0.802331 | 5.901581e-49 | 2.883172e-46 |
MsG0180000111.01 | MsG0380015090.01 | 0.818392 | 2.007426e-52 | 1.500822e-49 |
MsG0180001293.01 | MsG0380015090.01 | 0.838849 | 2.252129e-57 | 3.054446e-54 |
MsG0180001588.01 | MsG0380015090.01 | 0.803533 | 3.330675e-49 | 1.677929e-46 |
MsG0180001719.01 | MsG0380015090.01 | 0.827020 | 1.970363e-54 | 1.879034e-51 |
MsG0180002218.01 | MsG0380015090.01 | 0.848121 | 7.498327e-60 | 1.361843e-56 |
MsG0180002397.01 | MsG0380015090.01 | 0.834557 | 2.797648e-56 | 3.332121e-53 |
MsG0180002583.01 | MsG0380015090.01 | 0.811452 | 6.953538e-51 | 4.305861e-48 |
MsG0180003485.01 | MsG0380015090.01 | 0.826483 | 2.646601e-54 | 2.485087e-51 |
MsG0180003698.01 | MsG0380015090.01 | 0.843154 | 1.668727e-58 | 2.587214e-55 |
MsG0180003796.01 | MsG0380015090.01 | 0.802152 | 6.425622e-49 | 3.124722e-46 |
MsG0180003857.01 | MsG0380015090.01 | 0.878423 | 2.843656e-69 | 1.484162e-65 |
MsG0180004120.01 | MsG0380015090.01 | 0.860309 | 2.259800e-63 | 6.149696e-60 |
MsG0180004185.01 | MsG0380015090.01 | 0.845205 | 4.697077e-59 | 7.769008e-56 |
MsG0180004299.01 | MsG0380015090.01 | 0.860148 | 2.527691e-63 | 6.841584e-60 |
MsG0180004538.01 | MsG0380015090.01 | 0.881989 | 1.517160e-70 | 9.081528e-67 |
MsG0180004583.01 | MsG0380015090.01 | 0.911671 | 4.669275e-83 | 1.011439e-78 |
MsG0180004835.01 | MsG0380015090.01 | 0.842319 | 2.780430e-58 | 4.200175e-55 |
MsG0180004994.01 | MsG0380015090.01 | 0.810444 | 1.149300e-50 | 6.928803e-48 |
MsG0180004995.01 | MsG0380015090.01 | 0.850355 | 1.791391e-60 | 3.499410e-57 |
MsG0180005048.01 | MsG0380015090.01 | 0.856181 | 3.827413e-62 | 9.056446e-59 |
MsG0180005655.01 | MsG0380015090.01 | 0.821123 | 4.771964e-53 | 3.848573e-50 |
MsG0180006133.01 | MsG0380015090.01 | 0.881136 | 3.083131e-70 | 1.785128e-66 |
MsG0280010579.01 | MsG0380015090.01 | 0.801752 | 7.762480e-49 | 3.736496e-46 |
MsG0280011083.01 | MsG0380015090.01 | 0.825103 | 5.627159e-54 | 5.080409e-51 |
MsG0380012118.01 | MsG0380015090.01 | 0.832508 | 9.084043e-56 | 1.017473e-52 |
MsG0380012956.01 | MsG0380015090.01 | 0.910566 | 1.622877e-82 | 3.333463e-78 |
MsG0380013584.01 | MsG0380015090.01 | 0.816922 | 4.306420e-52 | 3.092235e-49 |
MsG0380014542.01 | MsG0380015090.01 | 0.871045 | 9.211593e-67 | 3.662953e-63 |
MsG0380014666.01 | MsG0380015090.01 | 0.883935 | 2.942901e-71 | 1.903564e-67 |
MsG0380014751.01 | MsG0380015090.01 | 0.817850 | 2.662292e-52 | 1.960913e-49 |
MsG0380015090.01 | MsG0380015219.01 | 0.822687 | 2.072839e-53 | 1.747349e-50 |
MsG0380015090.01 | MsG0380015340.01 | 0.843393 | 1.440582e-58 | 2.250985e-55 |
MsG0380015090.01 | MsG0380015394.01 | 0.854966 | 8.652625e-62 | 1.966461e-58 |
MsG0380015090.01 | MsG0380015825.01 | 0.810227 | 1.279893e-50 | 7.671991e-48 |
MsG0380015090.01 | MsG0380015954.01 | 0.833704 | 4.576749e-56 | 5.312448e-53 |
MsG0380015090.01 | MsG0380016027.01 | 0.885694 | 6.520651e-72 | 4.519972e-68 |
MsG0380015090.01 | MsG0380016091.01 | 0.831476 | 1.634062e-55 | 1.775309e-52 |
MsG0380015090.01 | MsG0380016165.01 | 0.825956 | 3.532939e-54 | 3.268194e-51 |
MsG0380015090.01 | MsG0380016225.01 | 0.834313 | 3.221467e-56 | 3.808961e-53 |
MsG0380015090.01 | MsG0380017164.01 | 0.802842 | 4.630104e-49 | 2.291671e-46 |
MsG0380015090.01 | MsG0380017282.01 | 0.839272 | 1.749887e-57 | 2.404213e-54 |
MsG0380015090.01 | MsG0380017440.01 | 0.843354 | 1.475044e-58 | 2.301908e-55 |
MsG0380015090.01 | MsG0380017605.01 | 0.859539 | 3.855712e-63 | 1.021830e-59 |
MsG0380015090.01 | MsG0380017632.01 | 0.831198 | 1.912318e-55 | 2.060410e-52 |
MsG0380015090.01 | MsG0380017696.01 | 0.804955 | 1.684454e-49 | 8.802392e-47 |
MsG0380015090.01 | MsG0380018055.01 | 0.855606 | 5.636042e-62 | 1.308473e-58 |
MsG0380015090.01 | MsG0480018228.01 | 0.839691 | 1.362102e-57 | 1.895560e-54 |
MsG0380015090.01 | MsG0480018785.01 | 0.842948 | 1.892609e-58 | 2.915361e-55 |
MsG0380015090.01 | MsG0480020398.01 | 0.844539 | 7.101363e-59 | 1.150137e-55 |
MsG0380015090.01 | MsG0480020856.01 | 0.840061 | 1.090692e-57 | 1.535771e-54 |
MsG0380015090.01 | MsG0480020921.01 | 0.834083 | 3.678878e-56 | 4.319394e-53 |
MsG0380015090.01 | MsG0480020926.01 | 0.829023 | 6.492105e-55 | 6.563350e-52 |
MsG0380015090.01 | MsG0480020970.01 | 0.810901 | 9.151812e-51 | 5.585624e-48 |
MsG0380015090.01 | MsG0480021016.01 | 0.800357 | 1.497052e-48 | 6.956511e-46 |
MsG0380015090.01 | MsG0480021100.01 | 0.865134 | 7.361670e-65 | 2.369342e-61 |
MsG0380015090.01 | MsG0480021301.01 | 0.861924 | 7.289110e-64 | 2.096362e-60 |
MsG0380015090.01 | MsG0480021449.01 | 0.808462 | 3.061005e-50 | 1.751364e-47 |
MsG0380015090.01 | MsG0480021456.01 | 0.864141 | 1.505543e-64 | 4.677427e-61 |
MsG0380015090.01 | MsG0480021704.01 | 0.847593 | 1.048573e-59 | 1.873015e-56 |
MsG0380015090.01 | MsG0480021773.01 | 0.873480 | 1.422970e-67 | 6.185496e-64 |
MsG0380015090.01 | MsG0480021902.01 | 0.882040 | 1.453164e-70 | 8.716490e-67 |
MsG0380015090.01 | MsG0480022307.01 | 0.858306 | 9.016305e-63 | 2.291105e-59 |
MsG0380015090.01 | MsG0480022378.01 | 0.823617 | 1.257806e-53 | 1.088541e-50 |
MsG0380015090.01 | MsG0480022559.01 | 0.818257 | 2.154358e-52 | 1.604482e-49 |
MsG0380015090.01 | MsG0480022784.01 | 0.889478 | 2.336131e-73 | 1.887932e-69 |
MsG0380015090.01 | MsG0480022982.01 | 0.805568 | 1.253508e-49 | 6.653784e-47 |
MsG0380015090.01 | MsG0480022991.01 | 0.827546 | 1.473751e-54 | 1.427176e-51 |
MsG0380015090.01 | MsG0480023003.01 | 0.886460 | 3.356086e-72 | 2.399570e-68 |
MsG0380015090.01 | MsG0480023296.01 | 0.801489 | 8.790039e-49 | 4.203232e-46 |
MsG0380015090.01 | MsG0480023424.01 | 0.864942 | 8.455403e-65 | 2.702321e-61 |
MsG0380015090.01 | MsG0480023426.01 | 0.882352 | 1.119465e-70 | 6.797031e-67 |
MsG0380015090.01 | MsG0480023428.01 | 0.807874 | 4.084677e-50 | 2.300957e-47 |
MsG0380015090.01 | MsG0480023653.01 | 0.836518 | 8.927956e-57 | 1.127749e-53 |
MsG0380015090.01 | MsG0480023679.01 | 0.848715 | 5.134955e-60 | 9.509328e-57 |
MsG0380015090.01 | MsG0480023706.01 | 0.849124 | 3.954163e-60 | 7.421397e-57 |
MsG0380015090.01 | MsG0480023842.01 | 0.831455 | 1.653593e-55 | 1.795409e-52 |
MsG0380015090.01 | MsG0480024019.01 | 0.822311 | 2.535667e-53 | 2.114723e-50 |
MsG0380015090.01 | MsG0580024060.01 | 0.810748 | 9.880011e-51 | 6.005121e-48 |
MsG0380015090.01 | MsG0580024276.01 | 0.844835 | 5.912081e-59 | 9.664617e-56 |
MsG0380015090.01 | MsG0580024742.01 | 0.832280 | 1.034196e-55 | 1.150416e-52 |
MsG0380015090.01 | MsG0580024748.01 | 0.820245 | 7.595820e-53 | 5.978017e-50 |
MsG0380015090.01 | MsG0580024787.01 | 0.876103 | 1.822371e-68 | 8.725861e-65 |
MsG0380015090.01 | MsG0580025177.01 | 0.821051 | 4.958322e-53 | 3.991096e-50 |
MsG0380015090.01 | MsG0580025186.01 | 0.854367 | 1.290605e-61 | 2.875383e-58 |
MsG0380015090.01 | MsG0580025203.01 | 0.816807 | 4.571101e-52 | 3.271812e-49 |
MsG0380015090.01 | MsG0580025504.01 | 0.894004 | 3.705427e-75 | 3.616468e-71 |
MsG0380015090.01 | MsG0580025506.01 | 0.841953 | 3.475324e-58 | 5.189289e-55 |
MsG0380015090.01 | MsG0580025775.01 | 0.844428 | 7.606270e-59 | 1.227587e-55 |
MsG0380015090.01 | MsG0580028923.01 | 0.835693 | 1.446061e-56 | 1.782035e-53 |
MsG0380015090.01 | MsG0580028927.01 | 0.808812 | 2.576747e-50 | 1.487769e-47 |
MsG0380015090.01 | MsG0580028955.01 | 0.880817 | 4.014539e-70 | 2.296528e-66 |
MsG0380015090.01 | MsG0580029102.01 | 0.831919 | 1.270269e-55 | 1.398407e-52 |
MsG0380015090.01 | MsG0580029123.01 | 0.849186 | 3.801407e-60 | 7.149380e-57 |
MsG0380015090.01 | MsG0580029261.01 | 0.823593 | 1.274029e-53 | 1.101816e-50 |
MsG0380015090.01 | MsG0580029591.01 | 0.846155 | 2.594125e-59 | 4.423958e-56 |
MsG0380015090.01 | MsG0680035350.01 | 0.861132 | 1.271198e-63 | 3.559163e-60 |
MsG0380015090.01 | MsG0680035776.01 | 0.828841 | 7.184421e-55 | 7.224426e-52 |
MsG0380015090.01 | MsG0680035792.01 | 0.830717 | 2.508875e-55 | 2.665179e-52 |
MsG0380015090.01 | MsG0780036534.01 | 0.892655 | 1.299275e-74 | 1.198728e-70 |
MsG0380015090.01 | MsG0780037741.01 | 0.833313 | 5.730193e-56 | 6.574678e-53 |
MsG0380015090.01 | MsG0780038402.01 | 0.857640 | 1.421913e-62 | 3.533382e-59 |
MsG0380015090.01 | MsG0780038642.01 | 0.815362 | 9.612902e-52 | 6.613732e-49 |
MsG0380015090.01 | MsG0780038736.01 | 0.871814 | 5.127836e-67 | 2.096616e-63 |
MsG0380015090.01 | MsG0780039861.01 | 0.850701 | 1.431865e-60 | 2.829021e-57 |
MsG0380015090.01 | MsG0780040474.01 | 0.815225 | 1.030955e-51 | 7.066117e-49 |
MsG0380015090.01 | MsG0780040620.01 | 0.894568 | 2.182206e-75 | 2.180915e-71 |
MsG0380015090.01 | MsG0780040641.01 | 0.874031 | 9.276228e-68 | 4.112717e-64 |
MsG0380015090.01 | MsG0780040899.01 | 0.815600 | 8.509586e-52 | 5.893257e-49 |
MsG0380015090.01 | MsG0780041008.01 | 0.838812 | 2.302208e-57 | 3.118930e-54 |
MsG0380015090.01 | MsG0780041143.01 | 0.805859 | 1.089139e-49 | 5.825111e-47 |
MsG0380015090.01 | MsG0780041273.01 | 0.857521 | 1.542977e-62 | 3.819032e-59 |
MsG0380015090.01 | MsG0780041340.01 | 0.832205 | 1.079535e-55 | 1.198260e-52 |
MsG0380015090.01 | MsG0780041359.01 | 0.891831 | 2.773336e-74 | 2.471022e-70 |
MsG0380015090.01 | MsG0880043684.01 | 0.834803 | 2.427082e-56 | 2.911660e-53 |
MsG0380015090.01 | MsG0880043714.01 | 0.841435 | 4.761085e-58 | 6.995553e-55 |
MsG0380015090.01 | MsG0880043752.01 | 0.831872 | 1.305137e-55 | 1.434819e-52 |
MsG0380015090.01 | MsG0880044437.01 | 0.826699 | 2.350097e-54 | 2.220388e-51 |
MsG0380015090.01 | MsG0880045015.01 | 0.821067 | 4.917778e-53 | 3.960153e-50 |
MsG0380015090.01 | MsG0880045612.01 | 0.873275 | 1.668024e-67 | 7.196008e-64 |
MsG0380015090.01 | MsG0880045647.01 | 0.867822 | 1.030826e-65 | 3.647806e-62 |
MsG0380015090.01 | MsG0880045879.01 | 0.813323 | 2.713292e-51 | 1.766368e-48 |
MsG0380015090.01 | MsG0880046411.01 | 0.800115 | 1.676449e-48 | 7.742133e-46 |
MsG0380015090.01 | MsG0880046529.01 | 0.833763 | 4.423476e-56 | 5.144154e-53 |
MsG0380015090.01 | MsG0880046646.01 | 0.858299 | 9.062289e-63 | 2.302386e-59 |
MsG0380015090.01 | MsG0880046904.01 | 0.891954 | 2.476287e-74 | 2.216521e-70 |
MsG0380015090.01 | MsG0880046905.01 | 0.891770 | 2.933360e-74 | 2.607042e-70 |
MsG0380015090.01 | MsG0880046993.01 | 0.841844 | 3.713742e-58 | 5.526354e-55 |
MsG0380015090.01 | MsG0880047649.01 | 0.901486 | 2.551949e-78 | 3.455947e-74 |
MsG0280006540.01 | MsG0380015090.01 | 0.818326 | 2.078169e-52 | 1.550778e-49 |
MsG0280006563.01 | MsG0380015090.01 | 0.848042 | 7.883323e-60 | 1.428191e-56 |
MsG0280007919.01 | MsG0380015090.01 | 0.808866 | 2.508935e-50 | 1.450722e-47 |
MsG0280009866.01 | MsG0380015090.01 | 0.837503 | 5.001585e-57 | 6.510479e-54 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380015090.01.T01 | MTR_3g063110 | 99.038 | 104 | 1 | 0 | 38 | 141 | 29 | 132 | 5.31e-70 | 208 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380015090.01.T01 | AT3G46940 | 91.346 | 104 | 9 | 0 | 38 | 141 | 86 | 189 | 1.28e-64 | 197 |
MsG0380015090.01.T01 | AT3G46940 | 91.346 | 104 | 9 | 0 | 38 | 141 | 45 | 148 | 1.70e-64 | 195 |
Find 49 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCCTGAAGTTTCTGAGGTT+TGG | 0.270793 | 3:+65057912 | MsG0380015090.01.T01:CDS |
GATTTGGATTCTACTGTTAG+AGG | 0.343621 | 3:+65057934 | MsG0380015090.01.T01:CDS |
TGAAGGTGGTTTGGATCTAC+TGG | 0.351476 | 3:+65057957 | MsG0380015090.01.T01:CDS |
AAGTTTCTGAGGTTTGGATT+TGG | 0.363384 | 3:+65057918 | MsG0380015090.01.T01:CDS |
ACACGAGCATAGGTTCCTTC+AGG | 0.369361 | 3:-65057636 | None:intergenic |
AACCTTTGAATCGGCGGCGC+TGG | 0.374420 | 3:-65057565 | None:intergenic |
TGTTAGAGGTGAAGGTGGTT+TGG | 0.409686 | 3:+65057948 | MsG0380015090.01.T01:CDS |
CTGATTACAGAGGACCTGTT+GGG | 0.415838 | 3:+65057804 | MsG0380015090.01.T01:CDS |
CATTCGATTGACGTTGGTGC+TGG | 0.432456 | 3:+65057770 | MsG0380015090.01.T01:CDS |
ATCCAAACCTCAGAAACTTC+AGG | 0.437816 | 3:-65057914 | None:intergenic |
ATGAGAGCTTTGCCGCGAGC+AGG | 0.461473 | 3:-65057588 | None:intergenic |
CGCCGAGATCGGGGTTGACA+TGG | 0.473074 | 3:+65057744 | MsG0380015090.01.T01:CDS |
GGCTAAAGATGAAGCTCTAA+AGG | 0.477089 | 3:+65055435 | MsG0380015090.01.T01:CDS |
TTCCATGTCAACCCCGATCT+CGG | 0.481839 | 3:-65057746 | None:intergenic |
CAAAATGGTGAAAGCTCTGC+AGG | 0.482204 | 3:+65055414 | None:intergenic |
TTAAACAGTATAACCCCAAC+AGG | 0.497604 | 3:-65057818 | None:intergenic |
GGAAGGTATAACGGCTTTGT+CGG | 0.505146 | 3:-65057509 | None:intergenic |
GATTCTACTGTTAGAGGTGA+AGG | 0.505946 | 3:+65057940 | MsG0380015090.01.T01:CDS |
TGTCGGAGAGTTTCTTCACT+CGG | 0.507441 | 3:-65057492 | None:intergenic |
CTCCAGCGCCGCCGATTCAA+AGG | 0.509909 | 3:+65057563 | MsG0380015090.01.T01:CDS |
CTCTCCATCGCCGTCCCTGA+AGG | 0.513836 | 3:+65057621 | MsG0380015090.01.T01:CDS |
GGCGCTGGAGAGATCGTATC+CGG | 0.519854 | 3:-65057550 | None:intergenic |
GAGAGCGCGGGAAGGTATAA+CGG | 0.522537 | 3:-65057518 | None:intergenic |
TATTACTCCTGAAGTTTCTG+AGG | 0.531575 | 3:+65057907 | MsG0380015090.01.T01:CDS |
CACGAGCATAGGTTCCTTCA+GGG | 0.535140 | 3:-65057635 | None:intergenic |
CCGCGCTCTCCTCTCTCCGC+CGG | 0.537228 | 3:+65057531 | MsG0380015090.01.T01:CDS |
GCGAGCAGGAACCTTTGAAT+CGG | 0.540643 | 3:-65057574 | None:intergenic |
GAAGGTGGTTTGGATCTACT+GGG | 0.541527 | 3:+65057958 | MsG0380015090.01.T01:CDS |
ACGGCGATGGAGAGATCTGT+GGG | 0.554559 | 3:-65057612 | None:intergenic |
GGTTCCTTCAGGGACGGCGA+TGG | 0.559917 | 3:-65057625 | None:intergenic |
GGAAGCTGATGAAGATGTTG+AGG | 0.569328 | 3:+65055456 | MsG0380015090.01.T01:CDS |
CCGGCGGAGAGAGGAGAGCG+CGG | 0.571771 | 3:-65057531 | None:intergenic |
TCTACTGTTAGAGGTGAAGG+TGG | 0.578300 | 3:+65057943 | MsG0380015090.01.T01:CDS |
GACGGCGATGGAGAGATCTG+TGG | 0.578622 | 3:-65057613 | None:intergenic |
AGCAGGAACCTTTGAATCGG+CGG | 0.581168 | 3:-65057571 | None:intergenic |
CGGCGGAGAGAGGAGAGCGC+GGG | 0.581769 | 3:-65057530 | None:intergenic |
GTAATTACCAACACGAGCAT+AGG | 0.588762 | 3:-65057646 | None:intergenic |
AGATCGTATCCGGCGGAGAG+AGG | 0.592423 | 3:-65057540 | None:intergenic |
GAAGGAACCTATGCTCGTGT+TGG | 0.606547 | 3:+65057639 | MsG0380015090.01.T01:CDS |
GGAGAGAGGAGAGCGCGGGA+AGG | 0.607060 | 3:-65057526 | None:intergenic |
GCTGATTACAGAGGACCTGT+TGG | 0.614644 | 3:+65057803 | MsG0380015090.01.T01:CDS |
TGGAAGCATTCGATTGACGT+TGG | 0.614719 | 3:+65057764 | MsG0380015090.01.T01:CDS |
AAGGTGGTTTGGATCTACTG+GGG | 0.628824 | 3:+65057959 | MsG0380015090.01.T01:CDS |
AGCATAGGTTCCTTCAGGGA+CGG | 0.629807 | 3:-65057631 | None:intergenic |
GATTCAAAGGTTCCTGCTCG+CGG | 0.632457 | 3:+65057576 | MsG0380015090.01.T01:CDS |
TGATTACAGAGGACCTGTTG+GGG | 0.654205 | 3:+65057805 | MsG0380015090.01.T01:CDS |
GTGATTGATGCTGATTACAG+AGG | 0.740502 | 3:+65057794 | MsG0380015090.01.T01:CDS |
GCTGGAGAGATCGTATCCGG+CGG | 0.743244 | 3:-65057547 | None:intergenic |
CGGCGATGGAGAGATCTGTG+GGG | 0.756952 | 3:-65057611 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTATTTAGTAATATTTTG+TGG | + | Chr3:65055917-65055936 | MsG0380015090.01.T01:intron | 10.0% |
!!! | ATTATTTAGTAATATTTTGT+GGG | + | Chr3:65055918-65055937 | MsG0380015090.01.T01:intron | 10.0% |
!!! | TTTAAGTATATTCAATTTTT+TGG | - | Chr3:65055739-65055758 | None:intergenic | 10.0% |
!!! | TTATTTAGTAATATTTTGTG+GGG | + | Chr3:65055919-65055938 | MsG0380015090.01.T01:intron | 15.0% |
!! | AAACAAATGATGTATCATTT+AGG | + | Chr3:65057083-65057102 | MsG0380015090.01.T01:intron | 20.0% |
!! | AAACCCTAAAATTCAAAATT+GGG | - | Chr3:65057685-65057704 | None:intergenic | 20.0% |
!! | AAATTTAGATTCATTGATCA+TGG | - | Chr3:65056601-65056620 | None:intergenic | 20.0% |
!! | AAATTTCTTAAGATGAACTT+TGG | - | Chr3:65056703-65056722 | None:intergenic | 20.0% |
!! | ATGTATTAGTAGAAGAATAT+GGG | - | Chr3:65056922-65056941 | None:intergenic | 20.0% |
!! | TAAAATTCAAAATTGGGAAA+GGG | - | Chr3:65057679-65057698 | None:intergenic | 20.0% |
!! | TATGTATTAGTAGAAGAATA+TGG | - | Chr3:65056923-65056942 | None:intergenic | 20.0% |
!! | TTTATATAGAAAGTGAGAAA+AGG | - | Chr3:65057363-65057382 | None:intergenic | 20.0% |
!!! | AATTTTAGGGTTTGAAATTT+AGG | + | Chr3:65057692-65057711 | MsG0380015090.01.T01:intron | 20.0% |
!!! | ATTTTAGGGTTTGAAATTTA+GGG | + | Chr3:65057693-65057712 | MsG0380015090.01.T01:intron | 20.0% |
!!! | ATTTTGAATTTGTTTGCAAA+AGG | - | Chr3:65056420-65056439 | None:intergenic | 20.0% |
!!! | ATTTTTTTCTTCTATTGATC+GGG | - | Chr3:65056312-65056331 | None:intergenic | 20.0% |
!!! | CATTTTTTTCTTCTATTGAT+CGG | - | Chr3:65056313-65056332 | None:intergenic | 20.0% |
!!! | TAAATTTGCAAAACGTTTTT+GGG | + | Chr3:65056614-65056633 | MsG0380015090.01.T01:intron | 20.0% |
!!! | TATTTAGTAATATTTTGTGG+GGG | + | Chr3:65055920-65055939 | MsG0380015090.01.T01:intron | 20.0% |
!!! | TTTCCCAATTTTGAATTTTA+GGG | + | Chr3:65057679-65057698 | MsG0380015090.01.T01:intron | 20.0% |
! | AAAATTCAAAATTGGGAAAG+GGG | - | Chr3:65057678-65057697 | None:intergenic | 25.0% |
! | AAATCTCTTGCAAATTTATG+TGG | - | Chr3:65056561-65056580 | None:intergenic | 25.0% |
! | AAATGATGAAGTAGTTATCT+TGG | + | Chr3:65056173-65056192 | MsG0380015090.01.T01:intron | 25.0% |
! | AAGAAGTAATTGGAAAAGAA+TGG | + | Chr3:65057299-65057318 | MsG0380015090.01.T01:intron | 25.0% |
! | AGTTATAGGAGAAAAAATCA+TGG | - | Chr3:65056538-65056557 | None:intergenic | 25.0% |
! | ATCCAGAAATATTGTTAAGT+GGG | + | Chr3:65055584-65055603 | MsG0380015090.01.T01:intron | 25.0% |
! | CAAACCCTAAAATTCAAAAT+TGG | - | Chr3:65057686-65057705 | None:intergenic | 25.0% |
! | CGATCAATAGAAGAAAAAAA+TGG | + | Chr3:65056311-65056330 | MsG0380015090.01.T01:intron | 25.0% |
! | CTAAAATTCAAAATTGGGAA+AGG | - | Chr3:65057680-65057699 | None:intergenic | 25.0% |
! | TAGATGATCAAAGACATTAA+AGG | + | Chr3:65057013-65057032 | MsG0380015090.01.T01:intron | 25.0% |
! | TGTATTAGTAGAAGAATATG+GGG | - | Chr3:65056921-65056940 | None:intergenic | 25.0% |
!! | CTAAATTTGCAAAACGTTTT+TGG | + | Chr3:65056613-65056632 | MsG0380015090.01.T01:intron | 25.0% |
!! | CTTTCCCAATTTTGAATTTT+AGG | + | Chr3:65057678-65057697 | MsG0380015090.01.T01:intron | 25.0% |
!! | GATTTGTCATTCTAGAAATT+AGG | - | Chr3:65056080-65056099 | None:intergenic | 25.0% |
!! | TTTTCACAGAAGTTTTCAAA+AGG | - | Chr3:65056503-65056522 | None:intergenic | 25.0% |
!!! | TTGAAAAGTGTTTTAACCAT+AGG | - | Chr3:65056214-65056233 | None:intergenic | 25.0% |
AAAATCAGAAGTGATCATGA+TGG | + | Chr3:65056461-65056480 | MsG0380015090.01.T01:intron | 30.0% | |
ATGAAAGTAATAGAGCATGT+GGG | + | Chr3:65055991-65056010 | MsG0380015090.01.T01:intron | 30.0% | |
CATCAATTGGAAGAAGTAAT+TGG | + | Chr3:65057289-65057308 | MsG0380015090.01.T01:intron | 30.0% | |
GATCCAGAAATATTGTTAAG+TGG | + | Chr3:65055583-65055602 | MsG0380015090.01.T01:intron | 30.0% | |
GCAAATTTATGTGGAGTTAT+AGG | - | Chr3:65056552-65056571 | None:intergenic | 30.0% | |
TAGGATATTTGAATGCTCAA+AGG | + | Chr3:65056751-65056770 | MsG0380015090.01.T01:intron | 30.0% | |
TATGAAAGTAATAGAGCATG+TGG | + | Chr3:65055990-65056009 | MsG0380015090.01.T01:intron | 30.0% | |
TCAACAATGTCCAACTTAAA+CGG | + | Chr3:65057448-65057467 | MsG0380015090.01.T01:intron | 30.0% | |
TCCAGAAATATTGTTAAGTG+GGG | + | Chr3:65055585-65055604 | MsG0380015090.01.T01:intron | 30.0% | |
TCTTATGAACAATTCTTCGT+TGG | + | Chr3:65056856-65056875 | MsG0380015090.01.T01:intron | 30.0% | |
TGATAACATGTAAGATGTGT+TGG | + | Chr3:65056951-65056970 | MsG0380015090.01.T01:intron | 30.0% | |
! | TCATTATTGATGACTTTAGC+AGG | + | Chr3:65056339-65056358 | MsG0380015090.01.T01:intron | 30.0% |
!!! | GGGGCAAATCTTATTTTTAA+TGG | + | Chr3:65055939-65055958 | MsG0380015090.01.T01:intron | 30.0% |
!!! | GTTGATTTTGAAGTGAAAGT+TGG | + | Chr3:65057851-65057870 | MsG0380015090.01.T01:CDS | 30.0% |
!!! | TGTTTTTTAGCTTACCTTCT+TGG | - | Chr3:65056102-65056121 | None:intergenic | 30.0% |
AATCCAAGTAATTGGACTCA+AGG | - | Chr3:65056896-65056915 | None:intergenic | 35.0% | |
ACGGATACATGAACAACAAA+TGG | - | Chr3:65056028-65056047 | None:intergenic | 35.0% | |
AGAATTGCTTTCACTACAAG+AGG | + | Chr3:65055544-65055563 | MsG0380015090.01.T01:intron | 35.0% | |
AGTAGTTATCTTGGTACTCA+TGG | + | Chr3:65056182-65056201 | MsG0380015090.01.T01:intron | 35.0% | |
ATCCAAGTAATTGGACTCAA+GGG | - | Chr3:65056895-65056914 | None:intergenic | 35.0% | |
ATGGGGAAAATCCAAGTAAT+TGG | - | Chr3:65056904-65056923 | None:intergenic | 35.0% | |
CCAGAAATATTGTTAAGTGG+GGG | + | Chr3:65055586-65055605 | MsG0380015090.01.T01:intron | 35.0% | |
CGGATACATGAACAACAAAT+GGG | - | Chr3:65056027-65056046 | None:intergenic | 35.0% | |
CTAGAATGACAAATCCAAGA+AGG | + | Chr3:65056085-65056104 | MsG0380015090.01.T01:intron | 35.0% | |
GAAAACTTCTGTGAAAAGCA+TGG | + | Chr3:65056506-65056525 | MsG0380015090.01.T01:intron | 35.0% | |
GAGCATTCAAATATCCTAAG+AGG | - | Chr3:65056749-65056768 | None:intergenic | 35.0% | |
GATACATGAACAACAAATGG+GGG | - | Chr3:65056025-65056044 | None:intergenic | 35.0% | |
GATTTGGATTCTACTGTTAG+AGG | + | Chr3:65057934-65057953 | MsG0380015090.01.T01:CDS | 35.0% | |
GGATACATGAACAACAAATG+GGG | - | Chr3:65056026-65056045 | None:intergenic | 35.0% | |
GTAATTGGAAAAGAATGGAG+CGG | + | Chr3:65057304-65057323 | MsG0380015090.01.T01:intron | 35.0% | |
TAATTGGAAAAGAATGGAGC+GGG | + | Chr3:65057305-65057324 | MsG0380015090.01.T01:intron | 35.0% | |
TATGAACAATTCTTCGTTGG+TGG | + | Chr3:65056859-65056878 | MsG0380015090.01.T01:intron | 35.0% | |
TATTACTCCTGAAGTTTCTG+AGG | + | Chr3:65057907-65057926 | MsG0380015090.01.T01:CDS | 35.0% | |
TCTTCCTTCAACTCATCAAT+TGG | + | Chr3:65057276-65057295 | MsG0380015090.01.T01:intron | 35.0% | |
TGAAAGTAATAGAGCATGTG+GGG | + | Chr3:65055992-65056011 | MsG0380015090.01.T01:intron | 35.0% | |
TTAAACAGTATAACCCCAAC+AGG | - | Chr3:65057821-65057840 | None:intergenic | 35.0% | |
TTCTGCACATTGATCTCTTT+AGG | + | Chr3:65056272-65056291 | MsG0380015090.01.T01:intron | 35.0% | |
! | TCTTCCAATTGATGAGTTGA+AGG | - | Chr3:65057283-65057302 | None:intergenic | 35.0% |
! | TTATTGATGACTTTAGCAGG+TGG | + | Chr3:65056342-65056361 | MsG0380015090.01.T01:intron | 35.0% |
!! | AAGTTTCTGAGGTTTGGATT+TGG | + | Chr3:65057918-65057937 | MsG0380015090.01.T01:CDS | 35.0% |
AACCCTTGAGTCCAATTACT+TGG | + | Chr3:65056890-65056909 | MsG0380015090.01.T01:intron | 40.0% | |
AAGAATGGAGCGGGAAAATT+TGG | + | Chr3:65057314-65057333 | MsG0380015090.01.T01:intron | 40.0% | |
ATCCAAACCTCAGAAACTTC+AGG | - | Chr3:65057917-65057936 | None:intergenic | 40.0% | |
CCCCCACTTAACAATATTTC+TGG | - | Chr3:65055589-65055608 | None:intergenic | 40.0% | |
CGTTCGACGAAACTATTCTT+AGG | - | Chr3:65056824-65056843 | None:intergenic | 40.0% | |
GATTCTACTGTTAGAGGTGA+AGG | + | Chr3:65057940-65057959 | MsG0380015090.01.T01:CDS | 40.0% | |
GGTGAAATTCCTTAGAAGCA+AGG | + | Chr3:65056370-65056389 | MsG0380015090.01.T01:intron | 40.0% | |
GTAATTACCAACACGAGCAT+AGG | - | Chr3:65057649-65057668 | None:intergenic | 40.0% | |
TCAATGTGCAGAAGTTCCAA+TGG | - | Chr3:65056265-65056284 | None:intergenic | 40.0% | |
TGCTAGTTGTTTGAACTCTC+TGG | - | Chr3:65055511-65055530 | None:intergenic | 40.0% | |
TTTCTTCACTCGGAGAAAAC+TGG | - | Chr3:65057485-65057504 | None:intergenic | 40.0% | |
! | GATGAAGATGTTGAGGTATC+TGG | + | Chr3:65055463-65055482 | MsG0380015090.01.T01:intron | 40.0% |
! | GGCTAAAGATGAAGCTCTAA+AGG | + | Chr3:65055435-65055454 | MsG0380015090.01.T01:CDS | 40.0% |
! | GTGATTGATGCTGATTACAG+AGG | + | Chr3:65057794-65057813 | MsG0380015090.01.T01:CDS | 40.0% |
!! | GAATCAGCTTTGAAATGACC+AGG | - | Chr3:65056056-65056075 | None:intergenic | 40.0% |
!! | TTGATCGGGTTAGTATTCAC+TGG | - | Chr3:65056298-65056317 | None:intergenic | 40.0% |
AAGACTCGTCCTTGCTTCTA+AGG | - | Chr3:65056382-65056401 | None:intergenic | 45.0% | |
AGAAGAGTCTCATGGCTACA+CGG | + | Chr3:65056128-65056147 | MsG0380015090.01.T01:intron | 45.0% | |
CAAAGCGAAGAAGAGTCTCA+TGG | + | Chr3:65056120-65056139 | MsG0380015090.01.T01:intron | 45.0% | |
CTGATTACAGAGGACCTGTT+GGG | + | Chr3:65057804-65057823 | MsG0380015090.01.T01:CDS | 45.0% | |
GGAAGCTGATGAAGATGTTG+AGG | + | Chr3:65055456-65055475 | MsG0380015090.01.T01:CDS | 45.0% | |
GTACTCATGGCAACATCCTA+TGG | + | Chr3:65056195-65056214 | MsG0380015090.01.T01:intron | 45.0% | |
TCTACTGTTAGAGGTGAAGG+TGG | + | Chr3:65057943-65057962 | MsG0380015090.01.T01:CDS | 45.0% | |
TGAAACGACGCCGTTTAAGT+TGG | - | Chr3:65057461-65057480 | None:intergenic | 45.0% | |
TGATTACAGAGGACCTGTTG+GGG | + | Chr3:65057805-65057824 | MsG0380015090.01.T01:CDS | 45.0% | |
TGTCGGAGAGTTTCTTCACT+CGG | - | Chr3:65057495-65057514 | None:intergenic | 45.0% | |
TGTTAGAGGTGAAGGTGGTT+TGG | + | Chr3:65057948-65057967 | MsG0380015090.01.T01:CDS | 45.0% | |
! | AAGCAAGGACGAGTCTTATG+AGG | + | Chr3:65056385-65056404 | MsG0380015090.01.T01:intron | 45.0% |
! | AAGGTGGTTTGGATCTACTG+GGG | + | Chr3:65057959-65057978 | MsG0380015090.01.T01:CDS | 45.0% |
! | GAAGATGTTGAGGTATCTGG+TGG | + | Chr3:65055466-65055485 | MsG0380015090.01.T01:intron | 45.0% |
! | GAAGGTGGTTTGGATCTACT+GGG | + | Chr3:65057958-65057977 | MsG0380015090.01.T01:CDS | 45.0% |
! | GAGGATACGCTTTTGAGCTT+TGG | - | Chr3:65056730-65056749 | None:intergenic | 45.0% |
! | GCTCAAAAGCGTATCCTCTT+AGG | + | Chr3:65056732-65056751 | MsG0380015090.01.T01:intron | 45.0% |
! | GGAAGGTATAACGGCTTTGT+CGG | - | Chr3:65057512-65057531 | None:intergenic | 45.0% |
! | TGAAGGTGGTTTGGATCTAC+TGG | + | Chr3:65057957-65057976 | MsG0380015090.01.T01:CDS | 45.0% |
! | TGACTTTAGCAGGTGGACTT+AGG | + | Chr3:65056349-65056368 | MsG0380015090.01.T01:intron | 45.0% |
! | TGTTTCTACCTCCAGACCAT+TGG | + | Chr3:65056246-65056265 | MsG0380015090.01.T01:intron | 45.0% |
!! | CTCCTGAAGTTTCTGAGGTT+TGG | + | Chr3:65057912-65057931 | MsG0380015090.01.T01:CDS | 45.0% |
!! | TGGAAGCATTCGATTGACGT+TGG | + | Chr3:65057764-65057783 | MsG0380015090.01.T01:CDS | 45.0% |
ACACGAGCATAGGTTCCTTC+AGG | - | Chr3:65057639-65057658 | None:intergenic | 50.0% | |
AGCAGGAACCTTTGAATCGG+CGG | - | Chr3:65057574-65057593 | None:intergenic | 50.0% | |
AGCATAGGTTCCTTCAGGGA+CGG | - | Chr3:65057634-65057653 | None:intergenic | 50.0% | |
CACGAGCATAGGTTCCTTCA+GGG | - | Chr3:65057638-65057657 | None:intergenic | 50.0% | |
CAGAAGTTCCAATGGTCTGG+AGG | - | Chr3:65056257-65056276 | None:intergenic | 50.0% | |
CATTCGATTGACGTTGGTGC+TGG | + | Chr3:65057770-65057789 | MsG0380015090.01.T01:CDS | 50.0% | |
GAAGAGTCTCATGGCTACAC+GGG | + | Chr3:65056129-65056148 | MsG0380015090.01.T01:intron | 50.0% | |
GAAGGAACCTATGCTCGTGT+TGG | + | Chr3:65057639-65057658 | MsG0380015090.01.T01:CDS | 50.0% | |
GATTCAAAGGTTCCTGCTCG+CGG | + | Chr3:65057576-65057595 | MsG0380015090.01.T01:CDS | 50.0% | |
GCGAGCAGGAACCTTTGAAT+CGG | - | Chr3:65057577-65057596 | None:intergenic | 50.0% | |
GCTGATTACAGAGGACCTGT+TGG | + | Chr3:65057803-65057822 | MsG0380015090.01.T01:CDS | 50.0% | |
GTGCAGAAGTTCCAATGGTC+TGG | - | Chr3:65056260-65056279 | None:intergenic | 50.0% | |
TGCTTTCACTACAAGAGGCC+TGG | + | Chr3:65055549-65055568 | MsG0380015090.01.T01:intron | 50.0% | |
TTCCATGTCAACCCCGATCT+CGG | - | Chr3:65057749-65057768 | None:intergenic | 50.0% | |
TTGAAATGACCAGGCAGGCA+CGG | - | Chr3:65056047-65056066 | None:intergenic | 50.0% | |
! | GGAGTGTGAGAGTGTGTTCA+TGG | - | Chr3:65057342-65057361 | None:intergenic | 50.0% |
!! | ATTTTTGCAGCGCCGAGATC+GGG | + | Chr3:65057734-65057753 | MsG0380015090.01.T01:intron | 50.0% |
!! | CAGCTTTGAAATGACCAGGC+AGG | - | Chr3:65056052-65056071 | None:intergenic | 50.0% |
!! | GATTTTTGCAGCGCCGAGAT+CGG | + | Chr3:65057733-65057752 | MsG0380015090.01.T01:intron | 50.0% |
AAGAGGCCTGGTCACAAGGA+CGG | + | Chr3:65055561-65055580 | MsG0380015090.01.T01:intron | 55.0% | |
ACGGCGATGGAGAGATCTGT+GGG | - | Chr3:65057615-65057634 | None:intergenic | 55.0% | |
CTACAAGAGGCCTGGTCACA+AGG | + | Chr3:65055557-65055576 | MsG0380015090.01.T01:intron | 55.0% | |
TTCATGTATCCGTGCCTGCC+TGG | + | Chr3:65056035-65056054 | MsG0380015090.01.T01:intron | 55.0% | |
! | GAGAGCGCGGGAAGGTATAA+CGG | - | Chr3:65057521-65057540 | None:intergenic | 55.0% |
!! | TTTTTGCAGCGCCGAGATCG+GGG | + | Chr3:65057735-65057754 | MsG0380015090.01.T01:intron | 55.0% |
AACCTTTGAATCGGCGGCGC+TGG | - | Chr3:65057568-65057587 | None:intergenic | 60.0% | |
AGATCGTATCCGGCGGAGAG+AGG | - | Chr3:65057543-65057562 | None:intergenic | 60.0% | |
ATGAGAGCTTTGCCGCGAGC+AGG | - | Chr3:65057591-65057610 | None:intergenic | 60.0% | |
CGGCGATGGAGAGATCTGTG+GGG | - | Chr3:65057614-65057633 | None:intergenic | 60.0% | |
CTGGATCCGTCCTTGTGACC+AGG | - | Chr3:65055570-65055589 | None:intergenic | 60.0% | |
GACGGCGATGGAGAGATCTG+TGG | - | Chr3:65057616-65057635 | None:intergenic | 60.0% | |
GCTGGAGAGATCGTATCCGG+CGG | - | Chr3:65057550-65057569 | None:intergenic | 60.0% | |
! | GGCGCTGGAGAGATCGTATC+CGG | - | Chr3:65057553-65057572 | None:intergenic | 60.0% |
CGCCGAGATCGGGGTTGACA+TGG | + | Chr3:65057744-65057763 | MsG0380015090.01.T01:CDS | 65.0% | |
CTCTCCATCGCCGTCCCTGA+AGG | + | Chr3:65057621-65057640 | MsG0380015090.01.T01:CDS | 65.0% | |
GGTTCCTTCAGGGACGGCGA+TGG | - | Chr3:65057628-65057647 | None:intergenic | 65.0% | |
!! | CTCCAGCGCCGCCGATTCAA+AGG | + | Chr3:65057563-65057582 | MsG0380015090.01.T01:CDS | 65.0% |
! | GGAGAGAGGAGAGCGCGGGA+AGG | - | Chr3:65057529-65057548 | None:intergenic | 70.0% |
CCGCGCTCTCCTCTCTCCGC+CGG | + | Chr3:65057531-65057550 | MsG0380015090.01.T01:CDS | 75.0% | |
CCGGCGGAGAGAGGAGAGCG+CGG | - | Chr3:65057534-65057553 | None:intergenic | 75.0% | |
! | CGGCGGAGAGAGGAGAGCGC+GGG | - | Chr3:65057533-65057552 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 65055418 | 65057997 | 65055418 | ID=MsG0380015090.01;Name=MsG0380015090.01 |
Chr3 | mRNA | 65055418 | 65057997 | 65055418 | ID=MsG0380015090.01.T01;Parent=MsG0380015090.01;Name=MsG0380015090.01.T01;_AED=0.33;_eAED=0.43;_QI=0|0|0|0.66|1|1|3|0|162 |
Chr3 | exon | 65055418 | 65055477 | 65055418 | ID=MsG0380015090.01.T01:exon:9940;Parent=MsG0380015090.01.T01 |
Chr3 | exon | 65057486 | 65057660 | 65057486 | ID=MsG0380015090.01.T01:exon:9941;Parent=MsG0380015090.01.T01 |
Chr3 | exon | 65057744 | 65057997 | 65057744 | ID=MsG0380015090.01.T01:exon:9942;Parent=MsG0380015090.01.T01 |
Chr3 | CDS | 65055418 | 65055477 | 65055418 | ID=MsG0380015090.01.T01:cds;Parent=MsG0380015090.01.T01 |
Chr3 | CDS | 65057486 | 65057660 | 65057486 | ID=MsG0380015090.01.T01:cds;Parent=MsG0380015090.01.T01 |
Chr3 | CDS | 65057744 | 65057997 | 65057744 | ID=MsG0380015090.01.T01:cds;Parent=MsG0380015090.01.T01 |
Gene Sequence |
Protein sequence |