AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038047.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038047.01.T01 MTR_7g444820 93.750 160 10 0 8 167 9 168 4.31e-107 304
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038047.01.T01 AT4G00030 76.056 142 34 0 26 167 36 177 2.71e-77 229

Find 61 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGCTTGGTGGGGTTGTTT+TGG 0.193274 7:+39035165 None:intergenic
ATTGAGAAGGCTGGCTTGTT+TGG 0.287312 7:-39035020 MsG0780038047.01.T01:CDS
GATTGAGAGGTGAATGGGTT+GGG 0.327881 7:+39035260 None:intergenic
CGGCAACTTGGCGGTTGCTC+TGG 0.343170 7:-39035070 MsG0780038047.01.T01:CDS
GAGGGTGAGGAGGTTCTTCT+TGG 0.375325 7:+39035217 None:intergenic
CAGTGTTACGTGGAAAGAAC+TGG 0.383547 7:-39033576 MsG0780038047.01.T01:CDS
ATGGGAATGTGTGGTGGTGG+TGG 0.384123 7:+39035314 None:intergenic
GGGTCTTGAGGCCACGGTCT+TGG 0.384643 7:+39035186 None:intergenic
GAAGAAAAGGGAAGTGGTGG+TGG 0.399827 7:+39035283 None:intergenic
TGAATGGGTTGGGGAAGAAA+AGG 0.412186 7:+39035270 None:intergenic
GGCTTGTTTGGAACTAAAGC+TGG 0.432776 7:-39035008 MsG0780038047.01.T01:CDS
GTCGAATATTGAAGTTGCTT+CGG 0.436707 7:-39034901 MsG0780038047.01.T01:CDS
GCCATGGGAATGTGTGGTGG+TGG 0.441355 7:+39035311 None:intergenic
AAGGGAAGTGGTGGTGGTGG+TGG 0.451258 7:+39035289 None:intergenic
AACGATCGATGCTAGCTTGG+TGG 0.460174 7:+39035154 None:intergenic
ACGATCGATGCTAGCTTGGT+GGG 0.461219 7:+39035155 None:intergenic
GAATGGGTTGGGGAAGAAAA+GGG 0.466912 7:+39035271 None:intergenic
TTGGTGGATTGAGAGGTGAA+TGG 0.467131 7:+39035254 None:intergenic
GAAAAGGGAAGTGGTGGTGG+TGG 0.471337 7:+39035286 None:intergenic
CTGTTCATCATTGAGAAGGC+TGG 0.471690 7:-39035029 MsG0780038047.01.T01:CDS
ACCATTGCCACCATTCGGAC+AGG 0.473527 7:-39033548 MsG0780038047.01.T01:CDS
GGTGAGGAGGTTCTTCTTGG+CGG 0.475367 7:+39035220 None:intergenic
TGGTGGATTGAGAGGTGAAT+GGG 0.475828 7:+39035255 None:intergenic
ATCGATGCAATGACCGAGCT+TGG 0.478728 7:-39035125 MsG0780038047.01.T01:CDS
TACTGTACCGGTGCCAAGCT+CGG 0.492553 7:+39035112 None:intergenic
GCAACCGCCAAGTTGCCGAC+AGG 0.496085 7:+39035075 None:intergenic
GGGGAAGAAAAGGGAAGTGG+TGG 0.500931 7:+39035280 None:intergenic
GTGGCCATGGGAATGTGTGG+TGG 0.507585 7:+39035308 None:intergenic
GTGGTGGCCATGGGAATGTG+TGG 0.511323 7:+39035305 None:intergenic
CCCTGTCCGAATGGTGGCAA+TGG 0.513481 7:+39033547 None:intergenic
GAAATACCATTGCCACCATT+CGG 0.514466 7:-39033553 MsG0780038047.01.T01:CDS
ATTCCCTGTCGGCAACTTGG+CGG 0.514923 7:-39035079 MsG0780038047.01.T01:CDS
ATCACCTGTGGTTACTGTAC+CGG 0.515371 7:+39035100 None:intergenic
GTGATTCCCTGTCGGCAACT+TGG 0.516351 7:-39035082 MsG0780038047.01.T01:CDS
ATTGAGAGGTGAATGGGTTG+GGG 0.525022 7:+39035261 None:intergenic
CGAACAAAGAAAACACCATC+AGG 0.525042 7:+39034924 None:intergenic
GGATTGAGAGGTGAATGGGT+TGG 0.533391 7:+39035259 None:intergenic
GTTGGGGAAGAAAAGGGAAG+TGG 0.533661 7:+39035277 None:intergenic
CAACCGCCAAGTTGCCGACA+GGG 0.535418 7:+39035076 None:intergenic
CACGGTCTTGGTCAGAGATG+AGG 0.542439 7:+39035198 None:intergenic
GGTAACGATCGATGCTAGCT+TGG 0.545911 7:+39035151 None:intergenic
ACGGTCTTGGTCAGAGATGA+GGG 0.570760 7:+39035199 None:intergenic
TGCCACCATTCGGACAGGGT+TGG 0.580620 7:-39033543 MsG0780038047.01.T01:CDS
CGATCGATGCTAGCTTGGTG+GGG 0.580899 7:+39035156 None:intergenic
ACCACCACCACACATTCCCA+TGG 0.596059 7:-39035312 MsG0780038047.01.T01:exon
CCATTGCCACCATTCGGACA+GGG 0.598795 7:-39033547 MsG0780038047.01.T01:CDS
GCAATGACCGAGCTTGGCAC+CGG 0.604566 7:-39035119 MsG0780038047.01.T01:CDS
TTTACGAGTGCAGTGTTACG+TGG 0.607226 7:-39033586 MsG0780038047.01.T01:CDS
GCAGCTGTTCATCATTGAGA+AGG 0.611613 7:-39035033 MsG0780038047.01.T01:CDS
CTTGGTCAGAGATGAGGGTG+AGG 0.611807 7:+39035204 None:intergenic
ACTTACCAACCCTGTCCGAA+TGG 0.612493 7:+39033538 None:intergenic
GTTGCTCTGGACTACTGAGA+AGG 0.629747 7:-39035057 MsG0780038047.01.T01:CDS
TACCAACCCTGTCCGAATGG+TGG 0.629823 7:+39033541 None:intergenic
GGCACCGGTACAGTAACCAC+AGG 0.633722 7:-39035104 MsG0780038047.01.T01:CDS
CTCGGTCATTGCATCGATCG+CGG 0.634291 7:+39035130 None:intergenic
GGTCAGAGATGAGGGTGAGG+AGG 0.635921 7:+39035207 None:intergenic
AGTGTTACGTGGAAAGAACT+GGG 0.637752 7:-39033575 MsG0780038047.01.T01:CDS
TGCCGACAGGGAATCACCTG+TGG 0.657281 7:+39035088 None:intergenic
AACCACAGGTGATTCCCTGT+CGG 0.661555 7:-39035090 MsG0780038047.01.T01:CDS
ACAAAGAAAACACCATCAGG+AGG 0.672815 7:+39034927 None:intergenic
CTCATCTCTGACCAAGACCG+TGG 0.686718 7:-39035197 MsG0780038047.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTGATTAATTTTGATTT+TGG - Chr7:39034058-39034077 MsG0780038047.01.T01:intron 10.0%
!! ATATTAATAATAAGACCAAT+TGG + Chr7:39034415-39034434 None:intergenic 15.0%
!! GTTATGAATCAAAATTAATT+TGG - Chr7:39035193-39035212 MsG0780038047.01.T01:CDS 15.0%
!!! GCATTCTTTTTTTTTTTTTT+TGG + Chr7:39035137-39035156 None:intergenic 15.0%
!! AAACATTAGATATGTAATGT+TGG + Chr7:39034356-39034375 None:intergenic 20.0%
!! AACATTAGATATGTAATGTT+GGG + Chr7:39034355-39034374 None:intergenic 20.0%
!! CAAAATTTATAGAACTCAAA+TGG + Chr7:39034854-39034873 None:intergenic 20.0%
!! TTACATATCTAATGTTTAAG+CGG - Chr7:39034359-39034378 MsG0780038047.01.T01:intron 20.0%
!!! AATTTTGATTTTGGTTTAAC+TGG - Chr7:39034067-39034086 MsG0780038047.01.T01:intron 20.0%
!!! CATTTGAGTTCTATAAATTT+TGG - Chr7:39034852-39034871 MsG0780038047.01.T01:intron 20.0%
! AATTCATACATTAGGTGTTT+AGG - Chr7:39034292-39034311 MsG0780038047.01.T01:intron 25.0%
! ACATTAGATATGTAATGTTG+GGG + Chr7:39034354-39034373 None:intergenic 25.0%
! CTTGATACCTATTGAAATTA+CGG + Chr7:39034964-39034983 None:intergenic 25.0%
! GTATAAATGAACTTTGTCAA+AGG + Chr7:39034782-39034801 None:intergenic 25.0%
! TACCTGTGAAAACTAATATT+TGG - Chr7:39035250-39035269 MsG0780038047.01.T01:CDS 25.0%
! TGACAAAGTTCATTTATACA+GGG - Chr7:39034783-39034802 MsG0780038047.01.T01:intron 25.0%
! TTGACAAAGTTCATTTATAC+AGG - Chr7:39034782-39034801 MsG0780038047.01.T01:intron 25.0%
! TTGATACCTATTGAAATTAC+GGG + Chr7:39034963-39034982 None:intergenic 25.0%
ATAACAATGTCAAGCTTGAA+GGG + Chr7:39034710-39034729 None:intergenic 30.0%
CGTAATTTCAATAGGTATCA+AGG - Chr7:39034962-39034981 MsG0780038047.01.T01:CDS 30.0%
GTTACGAGAATTCATACATT+AGG - Chr7:39034284-39034303 MsG0780038047.01.T01:intron 30.0%
TATAACAATGTCAAGCTTGA+AGG + Chr7:39034711-39034730 None:intergenic 30.0%
TGATACCTATTGAAATTACG+GGG + Chr7:39034962-39034981 None:intergenic 30.0%
TTTCTGATGAACTTGAACAT+TGG - Chr7:39034635-39034654 MsG0780038047.01.T01:intron 30.0%
!!! GACCAAATATTAGTTTTCAC+AGG + Chr7:39035255-39035274 None:intergenic 30.0%
AAAACCTACCTAGAGATTCA+AGG + Chr7:39034550-39034569 None:intergenic 35.0%
ACCAACTGAGCTATATTTAC+TGG + Chr7:39035017-39035036 None:intergenic 35.0%
ACCACTCATGTCTTAAAACA+TGG - Chr7:39034749-39034768 MsG0780038047.01.T01:intron 35.0%
CCAACTGAGCTATATTTACT+GGG + Chr7:39035016-39035035 None:intergenic 35.0%
CCACTCATGTCTTAAAACAT+GGG - Chr7:39034750-39034769 MsG0780038047.01.T01:intron 35.0%
CTGTGTAAAATTTGGTAGAC+TGG - Chr7:39035171-39035190 MsG0780038047.01.T01:CDS 35.0%
GGATTAAACTATCAACCACT+TGG + Chr7:39034995-39035014 None:intergenic 35.0%
GTCGAATATTGAAGTTGCTT+CGG - Chr7:39033968-39033987 MsG0780038047.01.T01:intron 35.0%
TAACAATGTCAAGCTTGAAG+GGG + Chr7:39034709-39034728 None:intergenic 35.0%
! ACGTGTCACTGTGTAAAATT+TGG - Chr7:39035163-39035182 MsG0780038047.01.T01:CDS 35.0%
! ATTAGAGAGGGATGTCTTTT+AGG - Chr7:39034807-39034826 MsG0780038047.01.T01:intron 35.0%
! ATTTATACAGGGCATTAGAG+AGG - Chr7:39034794-39034813 MsG0780038047.01.T01:intron 35.0%
! TAAAGCTGGAGATGTTTTAC+AGG - Chr7:39033875-39033894 MsG0780038047.01.T01:intron 35.0%
! TCAACATTGCTTGTTGAGTT+AGG - Chr7:39034202-39034221 MsG0780038047.01.T01:intron 35.0%
! TTTATACAGGGCATTAGAGA+GGG - Chr7:39034795-39034814 MsG0780038047.01.T01:intron 35.0%
!! CTGATGGTGTTTTCTTTGTT+CGG - Chr7:39033946-39033965 MsG0780038047.01.T01:intron 35.0%
!! GTGTTTAGGTGTTGAGAAAT+GGG - Chr7:39034306-39034325 MsG0780038047.01.T01:intron 35.0%
!! GTTATTACTTTTCCTCCTGA+TGG - Chr7:39033930-39033949 MsG0780038047.01.T01:intron 35.0%
!! TGTTTAGGTGTTGAGAAATG+GGG - Chr7:39034307-39034326 MsG0780038047.01.T01:intron 35.0%
AACAATGTCAAGCTTGAAGG+GGG + Chr7:39034708-39034727 None:intergenic 40.0%
ACAAAGAAAACACCATCAGG+AGG + Chr7:39033945-39033964 None:intergenic 40.0%
ACACTATAAGTGTGGAGAAG+TGG + Chr7:39035090-39035109 None:intergenic 40.0%
AGTGTTACGTGGAAAGAACT+GGG - Chr7:39035294-39035313 MsG0780038047.01.T01:CDS 40.0%
CACTATAAGTGTGGAGAAGT+GGG + Chr7:39035089-39035108 None:intergenic 40.0%
CCCAGTAAATATAGCTCAGT+TGG - Chr7:39035013-39035032 MsG0780038047.01.T01:CDS 40.0%
CGAACAAAGAAAACACCATC+AGG + Chr7:39033948-39033967 None:intergenic 40.0%
CTAGACTCACACTATAAGTG+TGG + Chr7:39035098-39035117 None:intergenic 40.0%
CTATTGAAATTACGGGGTTC+AGG + Chr7:39034956-39034975 None:intergenic 40.0%
CTGAACCCCGTAATTTCAAT+AGG - Chr7:39034954-39034973 MsG0780038047.01.T01:CDS 40.0%
GAAATACCATTGCCACCATT+CGG - Chr7:39035316-39035335 MsG0780038047.01.T01:five_prime_UTR 40.0%
TATCAAGGTTTCTGACCAAG+TGG - Chr7:39034977-39034996 MsG0780038047.01.T01:CDS 40.0%
TCCATGGACATTGGAATTCA+GGG - Chr7:39035040-39035059 MsG0780038047.01.T01:CDS 40.0%
TTGTGTGTATGAGTTTCAGG+TGG + Chr7:39034132-39034151 None:intergenic 40.0%
! TAATGTTTAAGCGGTGTCAG+TGG - Chr7:39034368-39034387 MsG0780038047.01.T01:intron 40.0%
! TTTTCTGACGTACTCAAGCT+TGG - Chr7:39034592-39034611 MsG0780038047.01.T01:intron 40.0%
!! ATGTCTGCACTGATTAAGAG+TGG + Chr7:39034900-39034919 None:intergenic 40.0%
!! GGTGTTTAGGTGTTGAGAAA+TGG - Chr7:39034305-39034324 MsG0780038047.01.T01:intron 40.0%
!!! CCCATGTTTTAAGACATGAG+TGG + Chr7:39034753-39034772 None:intergenic 40.0%
!!! TCTTTTGTTGGTGGATTGAG+AGG + Chr7:39033625-39033644 None:intergenic 40.0%
ACAATGTCAAGCTTGAAGGG+GGG + Chr7:39034707-39034726 None:intergenic 45.0%
ACCTCTAACTCCTTAACCCT+TGG - Chr7:39034658-39034677 MsG0780038047.01.T01:intron 45.0%
ACTCATGGGGCAATTCCAAT+TGG - Chr7:39034397-39034416 MsG0780038047.01.T01:intron 45.0%
ATAGTGTGAGTCTAGCCACT+GGG - Chr7:39035103-39035122 MsG0780038047.01.T01:CDS 45.0%
ATCACCTGTGGTTACTGTAC+CGG + Chr7:39033772-39033791 None:intergenic 45.0%
CAGTGTTACGTGGAAAGAAC+TGG - Chr7:39035293-39035312 MsG0780038047.01.T01:CDS 45.0%
CCAACCTTGAATCTCTAGGT+AGG - Chr7:39034543-39034562 MsG0780038047.01.T01:intron 45.0%
CCATGGACATTGGAATTCAG+GGG - Chr7:39035041-39035060 MsG0780038047.01.T01:CDS 45.0%
CCTACCTAGAGATTCAAGGT+TGG + Chr7:39034546-39034565 None:intergenic 45.0%
CGCTTGTGTGTATGAGTTTC+AGG + Chr7:39034135-39034154 None:intergenic 45.0%
CTCCATGGACATTGGAATTC+AGG - Chr7:39035039-39035058 MsG0780038047.01.T01:CDS 45.0%
CTGTTCATCATTGAGAAGGC+TGG - Chr7:39033840-39033859 MsG0780038047.01.T01:intron 45.0%
GAAATCCAGGGTTCAAACCT+CGG + Chr7:39035067-39035086 None:intergenic 45.0%
GCAGCTGTTCATCATTGAGA+AGG - Chr7:39033836-39033855 MsG0780038047.01.T01:intron 45.0%
GTCAGTGGAGTTGTACTCAT+GGG - Chr7:39034383-39034402 MsG0780038047.01.T01:intron 45.0%
TATAGTGTGAGTCTAGCCAC+TGG - Chr7:39035102-39035121 MsG0780038047.01.T01:CDS 45.0%
TCAGTGGAGTTGTACTCATG+GGG - Chr7:39034384-39034403 MsG0780038047.01.T01:intron 45.0%
TGTCAGTGGAGTTGTACTCA+TGG - Chr7:39034382-39034401 MsG0780038047.01.T01:intron 45.0%
TTTACGAGTGCAGTGTTACG+TGG - Chr7:39035283-39035302 MsG0780038047.01.T01:CDS 45.0%
! GATTGAGAGGTGAATGGGTT+GGG + Chr7:39033612-39033631 None:intergenic 45.0%
! GGCTTGTTTGGAACTAAAGC+TGG - Chr7:39033861-39033880 MsG0780038047.01.T01:intron 45.0%
!! ATTGAGAAGGCTGGCTTGTT+TGG - Chr7:39033849-39033868 MsG0780038047.01.T01:intron 45.0%
!! ATTGAGAGGTGAATGGGTTG+GGG + Chr7:39033611-39033630 None:intergenic 45.0%
!! GAATGGGTTGGGGAAGAAAA+GGG + Chr7:39033601-39033620 None:intergenic 45.0%
!! TAGCTTGGTGGGGTTGTTTT+GGG + Chr7:39033706-39033725 None:intergenic 45.0%
!! TGAATGGGTTGGGGAAGAAA+AGG + Chr7:39033602-39033621 None:intergenic 45.0%
!! TGGTGGATTGAGAGGTGAAT+GGG + Chr7:39033617-39033636 None:intergenic 45.0%
!! TTGGTGGATTGAGAGGTGAA+TGG + Chr7:39033618-39033637 None:intergenic 45.0%
!! TTTTTGGCCAAATAGCCCAG+TGG + Chr7:39035121-39035140 None:intergenic 45.0%
!!! CTTGGCGGTTAGTCTTTTGT+TGG + Chr7:39033637-39033656 None:intergenic 45.0%
!!! TTAAATTAAATTTGTTTTTT+CGG - Chr7:39034105-39034124 MsG0780038047.01.T01:intron 5.0%
AACCACAGGTGATTCCCTGT+CGG - Chr7:39033779-39033798 MsG0780038047.01.T01:intron 50.0%
ACACACAAGCGCGTTATCCT+GGG - Chr7:39034144-39034163 MsG0780038047.01.T01:intron 50.0%
ACGGTCTTGGTCAGAGATGA+GGG + Chr7:39033673-39033692 None:intergenic 50.0%
AGTCTAGCCACTGGGCTATT+TGG - Chr7:39035111-39035130 MsG0780038047.01.T01:CDS 50.0%
ATCGATGCAATGACCGAGCT+TGG - Chr7:39033744-39033763 MsG0780038047.01.T01:intron 50.0%
CCCCTGAATTCCAATGTCCA+TGG + Chr7:39035044-39035063 None:intergenic 50.0%
GAAGAAAAGGGAAGTGGTGG+TGG + Chr7:39033589-39033608 None:intergenic 50.0%
GCCAAGGGTTAAGGAGTTAG+AGG + Chr7:39034662-39034681 None:intergenic 50.0%
GCGACCAACCTTGAATCTCT+AGG - Chr7:39034539-39034558 MsG0780038047.01.T01:intron 50.0%
GGATTGAGAGGTGAATGGGT+TGG + Chr7:39033613-39033632 None:intergenic 50.0%
GGTAACGATCGATGCTAGCT+TGG + Chr7:39033721-39033740 None:intergenic 50.0%
GTGGAGAAGTGGGAAATCCA+GGG + Chr7:39035079-39035098 None:intergenic 50.0%
GTTGAGAAATGGGGAACTGC+CGG - Chr7:39034316-39034335 MsG0780038047.01.T01:intron 50.0%
GTTGGGGAAGAAAAGGGAAG+TGG + Chr7:39033595-39033614 None:intergenic 50.0%
GTTGGGGTACAAGTTCGAAC+CGG + Chr7:39034338-39034357 None:intergenic 50.0%
TACACACAAGCGCGTTATCC+TGG - Chr7:39034143-39034162 MsG0780038047.01.T01:intron 50.0%
TGTGGAGAAGTGGGAAATCC+AGG + Chr7:39035080-39035099 None:intergenic 50.0%
! AACGATCGATGCTAGCTTGG+TGG + Chr7:39033718-39033737 None:intergenic 50.0%
! ACGATCGATGCTAGCTTGGT+GGG + Chr7:39033717-39033736 None:intergenic 50.0%
! GTTGCTCTGGACTACTGAGA+AGG - Chr7:39033812-39033831 MsG0780038047.01.T01:intron 50.0%
!! CTAGCTTGGTGGGGTTGTTT+TGG + Chr7:39033707-39033726 None:intergenic 50.0%
!! GTTGGTAGCTCCATGGACAT+TGG - Chr7:39035031-39035050 MsG0780038047.01.T01:CDS 50.0%
!! TAGCTCAGTTGGTAGCTCCA+TGG - Chr7:39035024-39035043 MsG0780038047.01.T01:CDS 50.0%
!! TGTTTTGGGTCTTGAGGCCA+CGG + Chr7:39033692-39033711 None:intergenic 50.0%
!!! GGCGGTTAGTCTTTTGTTGG+TGG + Chr7:39033634-39033653 None:intergenic 50.0%
!!! TGGGGTTGTTTTGGGTCTTG+AGG + Chr7:39033698-39033717 None:intergenic 50.0%
ACATTGGAATTCAGGGGCCG+AGG - Chr7:39035047-39035066 MsG0780038047.01.T01:CDS 55.0%
ACCACCACCACACATTCCCA+TGG - Chr7:39033557-39033576 MsG0780038047.01.T01:CDS 55.0%
ACCATTGCCACCATTCGGAC+AGG - Chr7:39035321-39035340 MsG0780038047.01.T01:five_prime_UTR 55.0%
ATTCCCTGTCGGCAACTTGG+CGG - Chr7:39033790-39033809 MsG0780038047.01.T01:intron 55.0%
CACGGTCTTGGTCAGAGATG+AGG + Chr7:39033674-39033693 None:intergenic 55.0%
CCATTGCCACCATTCGGACA+GGG - Chr7:39035322-39035341 MsG0780038047.01.T01:five_prime_UTR 55.0%
CGTTATCCTGGGTTCGAGCT+CGG - Chr7:39034155-39034174 MsG0780038047.01.T01:intron 55.0%
CTCATCTCTGACCAAGACCG+TGG - Chr7:39033672-39033691 MsG0780038047.01.T01:intron 55.0%
CTGGTCTGAGCCAAGGGTTA+AGG + Chr7:39034671-39034690 None:intergenic 55.0%
CTTGGTCAGAGATGAGGGTG+AGG + Chr7:39033668-39033687 None:intergenic 55.0%
GAGGGTGAGGAGGTTCTTCT+TGG + Chr7:39033655-39033674 None:intergenic 55.0%
GGGGAAGAAAAGGGAAGTGG+TGG + Chr7:39033592-39033611 None:intergenic 55.0%
GGTGAGGAGGTTCTTCTTGG+CGG + Chr7:39033652-39033671 None:intergenic 55.0%
GTCAAGCTTGAAGGGGGGAT+GGG + Chr7:39034702-39034721 None:intergenic 55.0%
GTGATTCCCTGTCGGCAACT+TGG - Chr7:39033787-39033806 MsG0780038047.01.T01:intron 55.0%
GTTATCCTGGGTTCGAGCTC+GGG - Chr7:39034156-39034175 MsG0780038047.01.T01:intron 55.0%
TACCAACCCTGTCCGAATGG+TGG + Chr7:39035331-39035350 None:intergenic 55.0%
TGTCAAGCTTGAAGGGGGGA+TGG + Chr7:39034703-39034722 None:intergenic 55.0%
! AGCTCAACTGGTCTGAGCCA+AGG + Chr7:39034678-39034697 None:intergenic 55.0%
! CGATCGATGCTAGCTTGGTG+GGG + Chr7:39033716-39033735 None:intergenic 55.0%
! CTCGGTCATTGCATCGATCG+CGG + Chr7:39033742-39033761 None:intergenic 55.0%
! GCTCAACTGGTCTGAGCCAA+GGG + Chr7:39034677-39034696 None:intergenic 55.0%
! TACTGTACCGGTGCCAAGCT+CGG + Chr7:39033760-39033779 None:intergenic 55.0%
!! ATGGGAATGTGTGGTGGTGG+TGG + Chr7:39033558-39033577 None:intergenic 55.0%
!! GAAAAGGGAAGTGGTGGTGG+TGG + Chr7:39033586-39033605 None:intergenic 55.0%
CAACCGCCAAGTTGCCGACA+GGG + Chr7:39033796-39033815 None:intergenic 60.0%
CCCTGTCCGAATGGTGGCAA+TGG + Chr7:39035325-39035344 None:intergenic 60.0%
GCAATGACCGAGCTTGGCAC+CGG - Chr7:39033750-39033769 MsG0780038047.01.T01:intron 60.0%
GCCATGGGAATGTGTGGTGG+TGG + Chr7:39033561-39033580 None:intergenic 60.0%
GGTCAGAGATGAGGGTGAGG+AGG + Chr7:39033665-39033684 None:intergenic 60.0%
GTGGCCATGGGAATGTGTGG+TGG + Chr7:39033564-39033583 None:intergenic 60.0%
GTGGTGGCCATGGGAATGTG+TGG + Chr7:39033567-39033586 None:intergenic 60.0%
TGCCACCATTCGGACAGGGT+TGG - Chr7:39035326-39035345 MsG0780038047.01.T01:five_prime_UTR 60.0%
TGCCGACAGGGAATCACCTG+TGG + Chr7:39033784-39033803 None:intergenic 60.0%
!! AAGGGAAGTGGTGGTGGTGG+TGG + Chr7:39033583-39033602 None:intergenic 60.0%
!! CGAGCTCGGGTGAAGGCATT+CGG - Chr7:39034169-39034188 MsG0780038047.01.T01:intron 60.0%
!! GGCACCGGTACAGTAACCAC+AGG - Chr7:39033765-39033784 MsG0780038047.01.T01:intron 60.0%
AGGGGCCGAGGTTTGAACCC+TGG - Chr7:39035059-39035078 MsG0780038047.01.T01:CDS 65.0%
CGGCAACTTGGCGGTTGCTC+TGG - Chr7:39033799-39033818 MsG0780038047.01.T01:intron 65.0%
CTGGGTTCGAGCTCGGGTGA+AGG - Chr7:39034162-39034181 MsG0780038047.01.T01:intron 65.0%
CTTCACCCGAGCTCGAACCC+AGG + Chr7:39034164-39034183 None:intergenic 65.0%
GCAACCGCCAAGTTGCCGAC+AGG + Chr7:39033797-39033816 None:intergenic 65.0%
GGGGGGATGGGTAGCTCAAC+TGG + Chr7:39034690-39034709 None:intergenic 65.0%
GGGTCTTGAGGCCACGGTCT+TGG + Chr7:39033686-39033705 None:intergenic 65.0%
!! AGTGGTGGTGGTGGTGGCCA+TGG + Chr7:39033577-39033596 None:intergenic 65.0%
!! GTGGTGGTGGTGGTGGCCAT+GGG + Chr7:39033576-39033595 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 39033540 39035351 39033540 ID=MsG0780038047.01;Name=MsG0780038047.01
Chr7 mRNA 39033540 39035351 39033540 ID=MsG0780038047.01.T01;Parent=MsG0780038047.01;Name=MsG0780038047.01.T01;_AED=0.48;_eAED=0.48;_QI=36|1|0.5|1|1|1|2|0|167
Chr7 exon 39034882 39035351 39034882 ID=MsG0780038047.01.T01:exon:5109;Parent=MsG0780038047.01.T01
Chr7 exon 39033540 39033609 39033540 ID=MsG0780038047.01.T01:exon:5110;Parent=MsG0780038047.01.T01
Chr7 five_prime_UTR 39035316 39035351 39035316 ID=MsG0780038047.01.T01:five_prime_utr;Parent=MsG0780038047.01.T01
Chr7 CDS 39034882 39035315 39034882 ID=MsG0780038047.01.T01:cds;Parent=MsG0780038047.01.T01
Chr7 CDS 39033540 39033609 39033540 ID=MsG0780038047.01.T01:cds;Parent=MsG0780038047.01.T01
Gene Sequence

>MsG0780038047.01.T01

ATGGCCACCACCACCACCACTTCCCTTTTCTTCCCCAACCCATTCACCTCTCAATCCACCAACAAAAGACTAACCGCCAAGAAGAACCTCCTCACCCTCATCTCTGACCAAGACCGTGGCCTCAAGACCCAAAACAACCCCACCAAGCTAGCATCGATCGTTACCGCGATCGATGCAATGACCGAGCTTGGCACCGGTACAGTAACCACAGGTGATTCCCTGTCGGCAACTTGGCGGTTGCTCTGGACTACTGAGAAGGAGCAGCTGTTCATCATTGAGAAGGCTGGCTTGTTTGGAACTAAAGCTGGAGATGTTTTACAGGTCATTGACGTTAAGAATTTGATTCTTAACAATGTTATTACTTTTCCTCCTGATGGTGTTTTCTTTGTTCGGTCGAATATTGAAGTTGCTTCGGAGCAGAGAGTGAACTTCAAATTTACGAGTGCAGTGTTACGTGGAAAGAACTGGGAAATACCATTGCCACCATTCGGACAGGGTTGGTAA

Protein sequence

>MsG0780038047.01.T01

MATTTTTSLFFPNPFTSQSTNKRLTAKKNLLTLISDQDRGLKTQNNPTKLASIVTAIDAMTELGTGTVTTGDSLSATWRLLWTTEKEQLFIIEKAGLFGTKAGDVLQVIDVKNLILNNVITFPPDGVFFVRSNIEVASEQRVNFKFTSAVLRGKNWEIPLPPFGQGW*