AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035308.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035308.01.T01 MTR_6g080430 96.847 666 19 1 1 664 1 666 0.0 1323
MsG0680035308.01.T01 MTR_8g106680 66.617 674 199 14 7 664 4 667 0.0 831
MsG0680035308.01.T01 MTR_2g040970 35.928 167 104 1 113 279 81 244 5.17e-30 127
MsG0680035308.01.T01 MTR_2g040970 36.170 94 59 1 517 610 704 796 6.92e-12 69.3
MsG0680035308.01.T01 MTR_2g040970 35.928 167 104 1 113 279 81 244 6.28e-30 127
MsG0680035308.01.T01 MTR_2g040970 36.957 92 57 1 517 608 704 794 7.72e-12 69.3
MsG0680035308.01.T01 MTR_1g015120 28.532 361 201 11 78 420 44 365 4.69e-26 114
MsG0680035308.01.T01 MTR_4g125670 27.670 412 248 16 102 473 46 447 4.43e-24 108
MsG0680035308.01.T01 MTR_4g125670 34.615 104 65 2 516 619 593 693 4.17e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035308.01.T01 AT1G42550 54.252 682 274 16 1 661 1 665 0.0 667
MsG0680035308.01.T01 AT5G20610 27.119 413 216 13 1 395 1 346 4.23e-30 127
MsG0680035308.01.T01 AT5G20610 43.299 97 50 2 512 606 701 794 5.87e-15 79.3
MsG0680035308.01.T01 AT5G26160 33.333 186 118 3 96 278 48 230 3.91e-26 115
MsG0680035308.01.T01 AT5G26160 33.333 186 118 3 96 278 48 230 4.16e-26 115
MsG0680035308.01.T01 AT5G26160 33.333 186 118 3 96 278 48 230 4.16e-26 115

Find 110 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAACTCTAATCCATTTA+AGG 0.128652 6:+101839999 None:intergenic
AAAGGATTTCAACAGGAATT+TGG 0.166916 6:-101839756 MsG0680035308.01.T01:CDS
TCATTTCTGTTTGTGATTCT+TGG 0.170020 6:+101840732 None:intergenic
TTTGGAATTGGAAACCTATT+AGG 0.219662 6:-101841340 MsG0680035308.01.T01:CDS
TATGAATGATGAACTATATT+TGG 0.241024 6:+101840636 None:intergenic
ACATCACAAGACCCCTTAAA+TGG 0.244170 6:-101840012 MsG0680035308.01.T01:CDS
GCCTAACTCGATTTCCTTGC+CGG 0.266321 6:+101840955 None:intergenic
CCTGACCTTGGAAAAGGTTT+AGG 0.269757 6:-101840153 MsG0680035308.01.T01:CDS
GATGCTAAAGAGCTTGATTT+TGG 0.270366 6:-101841029 MsG0680035308.01.T01:CDS
ATTAGGGCTATTTCTCATAT+TGG 0.274179 6:-101841323 MsG0680035308.01.T01:CDS
AATTTGAGCCAAGACCATTT+TGG 0.305051 6:-101841070 MsG0680035308.01.T01:CDS
TTCACTTTCTAAGCAGATAA+AGG 0.307285 6:-101840397 MsG0680035308.01.T01:CDS
ATTAGAGTTGTTTCAGAAAC+TGG 0.313646 6:-101839989 MsG0680035308.01.T01:CDS
GACATTTGCATTGCTAGCTT+TGG 0.317570 6:+101840051 None:intergenic
TTCTAGCTGTTGTGTGTGAT+TGG 0.336318 6:+101841609 None:intergenic
GCAACAGGAGTTGAATTTCT+TGG 0.339458 6:+101841566 None:intergenic
TTACCTATCAGTTCATCTAT+TGG 0.347014 6:+101839919 None:intergenic
TTGGAATTGGAAACCTATTA+GGG 0.357658 6:-101841339 MsG0680035308.01.T01:CDS
TCCTTGACAATTTCACTTGA+AGG 0.360120 6:+101840465 None:intergenic
CTGTTTGTGATTCTTGGACT+AGG 0.370563 6:+101840738 None:intergenic
CTTTAGCATCAACTGCAAAA+AGG 0.371050 6:+101841042 None:intergenic
ACAAGAAAGGGATTTGGAAT+TGG 0.377769 6:-101841352 MsG0680035308.01.T01:CDS
ATGGCGAATGCAATGAGTTT+AGG 0.385047 6:-101839787 MsG0680035308.01.T01:CDS
GGTGGAGGACCTTGATCTTC+CGG 0.385688 6:-101840577 MsG0680035308.01.T01:CDS
TCAACAAGTTTATTAGTAGA+TGG 0.386259 6:+101840612 None:intergenic
ATATGAGAAATAGCCCTAAT+AGG 0.388608 6:+101841326 None:intergenic
TTAGAGCCTCTAGTTCTTCA+AGG 0.402903 6:+101841645 None:intergenic
GTGACAACAAGAAAGGGATT+TGG 0.407203 6:-101841358 MsG0680035308.01.T01:CDS
AAGTGCTGCACGGATAGTTT+CGG 0.411148 6:-101839821 MsG0680035308.01.T01:CDS
GGAGAGTTGGTTGTGAAACT+AGG 0.417962 6:-101840891 MsG0680035308.01.T01:CDS
CGAGCTACATAATTGTCTAA+AGG 0.424685 6:+101840084 None:intergenic
AACAACTCTAATCCATTTAA+GGG 0.424877 6:+101840000 None:intergenic
AGAATTTGAAGCCTAGTAGT+AGG 0.427655 6:-101840818 MsG0680035308.01.T01:CDS
CCTTGATCTTCCGGAGTTCG+AGG 0.428276 6:-101840568 MsG0680035308.01.T01:CDS
TTTGCTATGTTCTCCCATCA+TGG 0.429377 6:+101840365 None:intergenic
CTTAATCCATTCATTGATGA+AGG 0.431366 6:+101841245 None:intergenic
CTGAACATTGGAATTTCTCT+TGG 0.432062 6:+101841670 None:intergenic
TCTCTTCCTTCATCAATGAA+TGG 0.433021 6:-101841251 MsG0680035308.01.T01:CDS
CAATTGATTCTTGAACCAAC+TGG 0.437324 6:+101840985 None:intergenic
TATTGCAATCAACAAGGTAA+TGG 0.448877 6:-101841104 MsG0680035308.01.T01:CDS
TCTTGTGATGTTAACACAAA+AGG 0.450553 6:+101840024 None:intergenic
TATCTTCCTGACCTTGGAAA+AGG 0.459169 6:-101840159 MsG0680035308.01.T01:CDS
AAAAGCTAAAGGAGGAGAGT+TGG 0.468543 6:-101840904 MsG0680035308.01.T01:CDS
AGACAAGAAAGGATTTCAAC+AGG 0.470703 6:-101839763 MsG0680035308.01.T01:CDS
AAACTAGGATTTCAAATCAT+GGG 0.471260 6:-101840876 MsG0680035308.01.T01:CDS
TGACACGGAATCACAACGAT+TGG 0.471569 6:-101840337 MsG0680035308.01.T01:CDS
GAGTTCGAGGTTGTCGATAG+AGG 0.476589 6:-101840555 MsG0680035308.01.T01:CDS
CTGTTCAAACAATGCCATCA+AGG 0.476825 6:-101841181 MsG0680035308.01.T01:CDS
TCTTTAGTAGATGCAGCAAC+AGG 0.478322 6:+101841551 None:intergenic
AGGCATGCTAAACGATGTCT+TGG 0.478557 6:+101840758 None:intergenic
GCACCTTGAGAAACCCTTGA+TGG 0.478880 6:+101841167 None:intergenic
GCAAAGGTGGAATTTCAGAT+TGG 0.482762 6:+101840238 None:intergenic
CTATCGACAACCTCGAACTC+CGG 0.483620 6:+101840558 None:intergenic
TTTCAAATCATGGGGAAAGA+TGG 0.487596 6:-101840867 MsG0680035308.01.T01:CDS
CTCGGTGGATTTAAGCCAGT+TGG 0.491207 6:-101841000 MsG0680035308.01.T01:CDS
GAAACTAGGATTTCAAATCA+TGG 0.491842 6:-101840877 MsG0680035308.01.T01:CDS
AGGTATATCCAAAATGGTCT+TGG 0.495736 6:+101841062 None:intergenic
ACCGGCAAGGAAATCGAGTT+AGG 0.500647 6:-101840956 MsG0680035308.01.T01:CDS
CAAGTGTATCTTCCTGACCT+TGG 0.504483 6:-101840165 MsG0680035308.01.T01:CDS
AGAAAGAAAGAGAATAAAGA+TGG 0.506391 6:-101841206 MsG0680035308.01.T01:CDS
AGTTTGCAAGGAAAAGCTAA+AGG 0.507002 6:-101840915 MsG0680035308.01.T01:CDS
ATGCCAATAGATGAACTGAT+AGG 0.507132 6:-101839922 MsG0680035308.01.T01:CDS
TTCTTCAAGGAGCTGAACAT+TGG 0.510394 6:+101841658 None:intergenic
AACTCAGGTGACAACAAGAA+AGG 0.512839 6:-101841365 MsG0680035308.01.T01:CDS
GAAGAGAAGAAAGAAGATGA+AGG 0.517230 6:-101840522 MsG0680035308.01.T01:CDS
TGCGACGAGACCGAGGTTTG+TGG 0.521235 6:+101841489 None:intergenic
AGTTGAGGGTGACTTTCCAT+TGG 0.523342 6:+101841424 None:intergenic
CTGTTGTGTGTGATTGGTAA+AGG 0.525386 6:+101841615 None:intergenic
TGAGTTTAGGAAGACAAGAA+AGG 0.525668 6:-101839774 MsG0680035308.01.T01:CDS
TGTTGTGTGTGATTGGTAAA+GGG 0.529701 6:+101841616 None:intergenic
ACTCAGGTGACAACAAGAAA+GGG 0.533390 6:-101841364 MsG0680035308.01.T01:CDS
TCACAAACAGAAATGATGCT+TGG 0.533449 6:-101840725 MsG0680035308.01.T01:CDS
ACTTGTTGATGACAAAGAAA+AGG 0.539977 6:-101840598 MsG0680035308.01.T01:CDS
GTCGCATGTCCTTATCTCCA+TGG 0.541834 6:-101841472 MsG0680035308.01.T01:CDS
GAAACAAGCTTTAGTTTGCA+AGG 0.544388 6:-101840927 MsG0680035308.01.T01:CDS
TAGAATTTCTCTGCAGTAAG+TGG 0.544856 6:+101839718 None:intergenic
AAAGGCTCTTGAATCCATGA+TGG 0.546098 6:-101840379 MsG0680035308.01.T01:CDS
CCTCGAACTCCGGAAGATCA+AGG 0.553543 6:+101840568 None:intergenic
TGGAAAAGGTTTAGGTTGTG+TGG 0.555889 6:-101840145 MsG0680035308.01.T01:CDS
AAGAAAGAAGATGAAGGAGA+AGG 0.560474 6:-101840516 MsG0680035308.01.T01:CDS
AAGGAAATCGAGTTAGGCAG+TGG 0.560767 6:-101840950 MsG0680035308.01.T01:CDS
TGTGTGGTTCAAACAAGAGA+TGG 0.571908 6:-101840129 MsG0680035308.01.T01:CDS
ATAGCTTCTGCTATCATACA+AGG 0.577908 6:-101839868 MsG0680035308.01.T01:CDS
TCTGCTAATCTTCTCTGTGA+AGG 0.578831 6:+101840699 None:intergenic
ATACAAGGTAGAAACAAAGA+AGG 0.578846 6:-101839853 MsG0680035308.01.T01:CDS
CATCAATGAGAAAATTTGAG+AGG 0.579418 6:+101839942 None:intergenic
GAATATGAAACAACAAACTC+AGG 0.582610 6:-101841380 MsG0680035308.01.T01:CDS
TGTTCAAACAATGCCATCAA+GGG 0.586202 6:-101841180 MsG0680035308.01.T01:CDS
GATGATAATTCTTCATCATG+TGG 0.594745 6:-101840201 MsG0680035308.01.T01:CDS
CAAATCATGGGGAAAGATGG+AGG 0.596074 6:-101840864 MsG0680035308.01.T01:CDS
TGTTGATGACAAAGAAAAGG+TGG 0.597279 6:-101840595 MsG0680035308.01.T01:CDS
TGCTCTTCAAGATGCAAAGG+TGG 0.600242 6:+101840225 None:intergenic
ACCTTCAAGTGAAATTGTCA+AGG 0.601896 6:-101840466 MsG0680035308.01.T01:CDS
TCATGCTCTTCAAGATGCAA+AGG 0.602115 6:+101840222 None:intergenic
CATGTTTATTGCAATCAACA+AGG 0.603699 6:-101841110 MsG0680035308.01.T01:CDS
AAGGCTCTTGAATCCATGAT+GGG 0.604383 6:-101840378 MsG0680035308.01.T01:CDS
ACAAATCATGAAGATGCCAA+TGG 0.609561 6:-101841440 MsG0680035308.01.T01:CDS
AAGGACATGCGACGAGACCG+AGG 0.610630 6:+101841482 None:intergenic
AGAGTTTCTTCATATGCTTG+AGG 0.610639 6:-101840289 MsG0680035308.01.T01:CDS
AACTAGGATTTCAAATCATG+GGG 0.622554 6:-101840875 MsG0680035308.01.T01:CDS
TCAGCTCCTTGAAGAACTAG+AGG 0.632926 6:-101841651 MsG0680035308.01.T01:CDS
GTCGAGCGAATGAAGATGTG+AGG 0.633499 6:+101840787 None:intergenic
TTGCAAGGAAAAGCTAAAGG+AGG 0.636808 6:-101840912 MsG0680035308.01.T01:CDS
ACAACTCTAATCCATTTAAG+GGG 0.637198 6:+101840001 None:intergenic
AGTTTCGGCATTGAAAGACA+TGG 0.642413 6:-101839806 MsG0680035308.01.T01:CDS
ATGCCATCAAGGGTTTCTCA+AGG 0.644801 6:-101841170 MsG0680035308.01.T01:CDS
GAGCAAGTTCAAGTGCTGCA+CGG 0.645893 6:-101839831 MsG0680035308.01.T01:CDS
GTGGTTCAAACAAGAGATGG+AGG 0.648990 6:-101840126 MsG0680035308.01.T01:CDS
TGATGACAAAGAAAAGGTGG+AGG 0.650584 6:-101840592 MsG0680035308.01.T01:CDS
AGGAAATCGAGTTAGGCAGT+GGG 0.673151 6:-101840949 MsG0680035308.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGAATGATGAACTATATT+TGG + Chr6:101840773-101840792 None:intergenic 20.0%
! AAACAACTCTAATCCATTTA+AGG + Chr6:101841410-101841429 None:intergenic 25.0%
! AAACTAGGATTTCAAATCAT+GGG - Chr6:101840530-101840549 MsG0680035308.01.T01:CDS 25.0%
! AACAACTCTAATCCATTTAA+GGG + Chr6:101841409-101841428 None:intergenic 25.0%
! AAGAATCAATTGAGAAAAAC+CGG - Chr6:101840432-101840451 MsG0680035308.01.T01:CDS 25.0%
! AGAAAGAAAGAGAATAAAGA+TGG - Chr6:101840200-101840219 MsG0680035308.01.T01:CDS 25.0%
! TCAACAAGTTTATTAGTAGA+TGG + Chr6:101840797-101840816 None:intergenic 25.0%
!! TTGAAGAAACACTTTTCTTA+AGG - Chr6:101840270-101840289 MsG0680035308.01.T01:CDS 25.0%
!!! TGATTTGTTTTTGATTTCCA+TGG + Chr6:101839954-101839973 None:intergenic 25.0%
AAAGGATTTCAACAGGAATT+TGG - Chr6:101841650-101841669 MsG0680035308.01.T01:CDS 30.0%
AACTAGGATTTCAAATCATG+GGG - Chr6:101840531-101840550 MsG0680035308.01.T01:CDS 30.0%
ACAACTCTAATCCATTTAAG+GGG + Chr6:101841408-101841427 None:intergenic 30.0%
ATACAAGGTAGAAACAAAGA+AGG - Chr6:101841553-101841572 MsG0680035308.01.T01:CDS 30.0%
ATATGAGAAATAGCCCTAAT+AGG + Chr6:101840083-101840102 None:intergenic 30.0%
CATCAATGAGAAAATTTGAG+AGG + Chr6:101841467-101841486 None:intergenic 30.0%
CATGTTTATTGCAATCAACA+AGG - Chr6:101840296-101840315 MsG0680035308.01.T01:CDS 30.0%
CTTAATCCATTCATTGATGA+AGG + Chr6:101840164-101840183 None:intergenic 30.0%
GAAACTAGGATTTCAAATCA+TGG - Chr6:101840529-101840548 MsG0680035308.01.T01:CDS 30.0%
GAATATGAAACAACAAACTC+AGG - Chr6:101840026-101840045 MsG0680035308.01.T01:CDS 30.0%
GATGATAATTCTTCATCATG+TGG - Chr6:101841205-101841224 MsG0680035308.01.T01:CDS 30.0%
TATTGCAATCAACAAGGTAA+TGG - Chr6:101840302-101840321 MsG0680035308.01.T01:CDS 30.0%
TCATTTCTGTTTGTGATTCT+TGG + Chr6:101840677-101840696 None:intergenic 30.0%
TCTTGTGATGTTAACACAAA+AGG + Chr6:101841385-101841404 None:intergenic 30.0%
TTACCTATCAGTTCATCTAT+TGG + Chr6:101841490-101841509 None:intergenic 30.0%
TTCACTTTCTAAGCAGATAA+AGG - Chr6:101841009-101841028 MsG0680035308.01.T01:CDS 30.0%
TTGGAATTGGAAACCTATTA+GGG - Chr6:101840067-101840086 MsG0680035308.01.T01:CDS 30.0%
! ATTAGAGTTGTTTCAGAAAC+TGG - Chr6:101841417-101841436 MsG0680035308.01.T01:CDS 30.0%
! GCAAAAAGGTATATCCAAAA+TGG + Chr6:101840353-101840372 None:intergenic 30.0%
! TTTGGAATTGGAAACCTATT+AGG - Chr6:101840066-101840085 MsG0680035308.01.T01:CDS 30.0%
!! ACATAGCAAAGATTTTGACA+CGG - Chr6:101841054-101841073 MsG0680035308.01.T01:CDS 30.0%
!! ACTTGTTGATGACAAAGAAA+AGG - Chr6:101840808-101840827 MsG0680035308.01.T01:CDS 30.0%
!! ATTAGGGCTATTTCTCATAT+TGG - Chr6:101840083-101840102 MsG0680035308.01.T01:CDS 30.0%
!! ATTGTTTTCTGATTGAGTTG+AGG + Chr6:101840000-101840019 None:intergenic 30.0%
!!! TTGTTTTCTGATTGAGTTGA+GGG + Chr6:101839999-101840018 None:intergenic 30.0%
!!! TTTTGATTTCCATGGAGATA+AGG + Chr6:101839946-101839965 None:intergenic 30.0%
AAGAAAGAAGATGAAGGAGA+AGG - Chr6:101840890-101840909 MsG0680035308.01.T01:CDS 35.0%
ACAAATCATGAAGATGCCAA+TGG - Chr6:101839966-101839985 MsG0680035308.01.T01:CDS 35.0%
ACCTTCAAGTGAAATTGTCA+AGG - Chr6:101840940-101840959 MsG0680035308.01.T01:CDS 35.0%
AGACAAGAAAGGATTTCAAC+AGG - Chr6:101841643-101841662 MsG0680035308.01.T01:CDS 35.0%
AGAGTTTCTTCATATGCTTG+AGG - Chr6:101841117-101841136 MsG0680035308.01.T01:CDS 35.0%
AGGTATATCCAAAATGGTCT+TGG + Chr6:101840347-101840366 None:intergenic 35.0%
AGTTTGCAAGGAAAAGCTAA+AGG - Chr6:101840491-101840510 MsG0680035308.01.T01:CDS 35.0%
ATAGCTTCTGCTATCATACA+AGG - Chr6:101841538-101841557 MsG0680035308.01.T01:CDS 35.0%
ATGCCAATAGATGAACTGAT+AGG - Chr6:101841484-101841503 MsG0680035308.01.T01:CDS 35.0%
CGAGCTACATAATTGTCTAA+AGG + Chr6:101841325-101841344 None:intergenic 35.0%
CTGAACATTGGAATTTCTCT+TGG + Chr6:101839739-101839758 None:intergenic 35.0%
CTTTAGCATCAACTGCAAAA+AGG + Chr6:101840367-101840386 None:intergenic 35.0%
GAAGAGAAGAAAGAAGATGA+AGG - Chr6:101840884-101840903 MsG0680035308.01.T01:CDS 35.0%
TAGAATTTCTCTGCAGTAAG+TGG + Chr6:101841691-101841710 None:intergenic 35.0%
TCACAAACAGAAATGATGCT+TGG - Chr6:101840681-101840700 MsG0680035308.01.T01:CDS 35.0%
TCCTTGACAATTTCACTTGA+AGG + Chr6:101840944-101840963 None:intergenic 35.0%
TCTCTTCCTTCATCAATGAA+TGG - Chr6:101840155-101840174 MsG0680035308.01.T01:CDS 35.0%
TGAGTTTAGGAAGACAAGAA+AGG - Chr6:101841632-101841651 MsG0680035308.01.T01:CDS 35.0%
TGTTCAAACAATGCCATCAA+GGG - Chr6:101840226-101840245 MsG0680035308.01.T01:CDS 35.0%
TGTTGTGTGTGATTGGTAAA+GGG + Chr6:101839793-101839812 None:intergenic 35.0%
TTTCAAATCATGGGGAAAGA+TGG - Chr6:101840539-101840558 MsG0680035308.01.T01:CDS 35.0%
! AATTTGAGCCAAGACCATTT+TGG - Chr6:101840336-101840355 MsG0680035308.01.T01:CDS 35.0%
! ACAAGAAAGGGATTTGGAAT+TGG - Chr6:101840054-101840073 MsG0680035308.01.T01:CDS 35.0%
! AGAATTTGAAGCCTAGTAGT+AGG - Chr6:101840588-101840607 MsG0680035308.01.T01:CDS 35.0%
! AGGTTTTTGAACCTACTACT+AGG + Chr6:101840602-101840621 None:intergenic 35.0%
! CAATTGATTCTTGAACCAAC+TGG + Chr6:101840424-101840443 None:intergenic 35.0%
! GATGCTAAAGAGCTTGATTT+TGG - Chr6:101840377-101840396 MsG0680035308.01.T01:CDS 35.0%
!! GAAACAAGCTTTAGTTTGCA+AGG - Chr6:101840479-101840498 MsG0680035308.01.T01:CDS 35.0%
!! GCTTGATTTTGGAAGAAACT+CGG - Chr6:101840388-101840407 MsG0680035308.01.T01:CDS 35.0%
!! TGTTGATGACAAAGAAAAGG+TGG - Chr6:101840811-101840830 MsG0680035308.01.T01:CDS 35.0%
AAAAGCTAAAGGAGGAGAGT+TGG - Chr6:101840502-101840521 MsG0680035308.01.T01:CDS 40.0%
AAAGGCTCTTGAATCCATGA+TGG - Chr6:101841027-101841046 MsG0680035308.01.T01:CDS 40.0%
AACTCAGGTGACAACAAGAA+AGG - Chr6:101840041-101840060 MsG0680035308.01.T01:CDS 40.0%
AAGGCTCTTGAATCCATGAT+GGG - Chr6:101841028-101841047 MsG0680035308.01.T01:CDS 40.0%
ACAAAAACAGCCACAAACCT+CGG - Chr6:101839907-101839926 MsG0680035308.01.T01:CDS 40.0%
ACATCACAAGACCCCTTAAA+TGG - Chr6:101841394-101841413 MsG0680035308.01.T01:CDS 40.0%
ACTCAGGTGACAACAAGAAA+GGG - Chr6:101840042-101840061 MsG0680035308.01.T01:CDS 40.0%
ATGGCGAATGCAATGAGTTT+AGG - Chr6:101841619-101841638 MsG0680035308.01.T01:CDS 40.0%
CTGTTCAAACAATGCCATCA+AGG - Chr6:101840225-101840244 MsG0680035308.01.T01:CDS 40.0%
CTGTTGTGTGTGATTGGTAA+AGG + Chr6:101839794-101839813 None:intergenic 40.0%
CTGTTTGTGATTCTTGGACT+AGG + Chr6:101840671-101840690 None:intergenic 40.0%
GCAAAGGTGGAATTTCAGAT+TGG + Chr6:101841171-101841190 None:intergenic 40.0%
GCAACAGGAGTTGAATTTCT+TGG + Chr6:101839843-101839862 None:intergenic 40.0%
GTGACAACAAGAAAGGGATT+TGG - Chr6:101840048-101840067 MsG0680035308.01.T01:CDS 40.0%
TATCTTCCTGACCTTGGAAA+AGG - Chr6:101841247-101841266 MsG0680035308.01.T01:CDS 40.0%
TCAATTGAGAAAAACCGGCA+AGG - Chr6:101840437-101840456 MsG0680035308.01.T01:CDS 40.0%
TCATGCTCTTCAAGATGCAA+AGG + Chr6:101841187-101841206 None:intergenic 40.0%
TCTGCTAATCTTCTCTGTGA+AGG + Chr6:101840710-101840729 None:intergenic 40.0%
TCTTTAGTAGATGCAGCAAC+AGG + Chr6:101839858-101839877 None:intergenic 40.0%
TGATGACAAAGAAAAGGTGG+AGG - Chr6:101840814-101840833 MsG0680035308.01.T01:CDS 40.0%
TGTGTGGTTCAAACAAGAGA+TGG - Chr6:101841277-101841296 MsG0680035308.01.T01:CDS 40.0%
TTCTTCAAGGAGCTGAACAT+TGG + Chr6:101839751-101839770 None:intergenic 40.0%
TTGCAAGGAAAAGCTAAAGG+AGG - Chr6:101840494-101840513 MsG0680035308.01.T01:CDS 40.0%
! AGTTTCGGCATTGAAAGACA+TGG - Chr6:101841600-101841619 MsG0680035308.01.T01:CDS 40.0%
! CACAACCTAAACCTTTTCCA+AGG + Chr6:101841261-101841280 None:intergenic 40.0%
! GACATTTGCATTGCTAGCTT+TGG + Chr6:101841358-101841377 None:intergenic 40.0%
! TTCTAGCTGTTGTGTGTGAT+TGG + Chr6:101839800-101839819 None:intergenic 40.0%
! TTTGCTATGTTCTCCCATCA+TGG + Chr6:101841044-101841063 None:intergenic 40.0%
!! GCTGAACAGATTGCTTTTGA+AGG - Chr6:101841514-101841533 MsG0680035308.01.T01:CDS 40.0%
!! TGATTTTGGAAGAAACTCGG+TGG - Chr6:101840391-101840410 MsG0680035308.01.T01:CDS 40.0%
!! TGGAAAAGGTTTAGGTTGTG+TGG - Chr6:101841261-101841280 MsG0680035308.01.T01:CDS 40.0%
!! TTAGAGCCTCTAGTTCTTCA+AGG + Chr6:101839764-101839783 None:intergenic 40.0%
AAGGAAATCGAGTTAGGCAG+TGG - Chr6:101840456-101840475 MsG0680035308.01.T01:CDS 45.0%
AGGAAATCGAGTTAGGCAGT+GGG - Chr6:101840457-101840476 MsG0680035308.01.T01:CDS 45.0%
AGGCATGCTAAACGATGTCT+TGG + Chr6:101840651-101840670 None:intergenic 45.0%
AGTTGAGGGTGACTTTCCAT+TGG + Chr6:101839985-101840004 None:intergenic 45.0%
ATGCCATCAAGGGTTTCTCA+AGG - Chr6:101840236-101840255 MsG0680035308.01.T01:CDS 45.0%
CAAATCATGGGGAAAGATGG+AGG - Chr6:101840542-101840561 MsG0680035308.01.T01:CDS 45.0%
CAAGTGTATCTTCCTGACCT+TGG - Chr6:101841241-101841260 MsG0680035308.01.T01:CDS 45.0%
CCTGACCTTGGAAAAGGTTT+AGG - Chr6:101841253-101841272 MsG0680035308.01.T01:CDS 45.0%
GTGGTTCAAACAAGAGATGG+AGG - Chr6:101841280-101841299 MsG0680035308.01.T01:CDS 45.0%
TCAGCTCCTTGAAGAACTAG+AGG - Chr6:101839755-101839774 MsG0680035308.01.T01:CDS 45.0%
TGACACGGAATCACAACGAT+TGG - Chr6:101841069-101841088 MsG0680035308.01.T01:CDS 45.0%
TGCTCTTCAAGATGCAAAGG+TGG + Chr6:101841184-101841203 None:intergenic 45.0%
! AAGTGCTGCACGGATAGTTT+CGG - Chr6:101841585-101841604 MsG0680035308.01.T01:CDS 45.0%
! CCTAAACCTTTTCCAAGGTC+AGG + Chr6:101841256-101841275 None:intergenic 45.0%
! GGAGAGTTGGTTGTGAAACT+AGG - Chr6:101840515-101840534 MsG0680035308.01.T01:CDS 45.0%
ACCGGCAAGGAAATCGAGTT+AGG - Chr6:101840450-101840469 MsG0680035308.01.T01:CDS 50.0%
CTATCGACAACCTCGAACTC+CGG + Chr6:101840851-101840870 None:intergenic 50.0%
GAGTTCGAGGTTGTCGATAG+AGG - Chr6:101840851-101840870 MsG0680035308.01.T01:CDS 50.0%
GCACCTTGAGAAACCCTTGA+TGG + Chr6:101840242-101840261 None:intergenic 50.0%
GCCTAACTCGATTTCCTTGC+CGG + Chr6:101840454-101840473 None:intergenic 50.0%
GTCGAGCGAATGAAGATGTG+AGG + Chr6:101840622-101840641 None:intergenic 50.0%
GTCGCATGTCCTTATCTCCA+TGG - Chr6:101839934-101839953 MsG0680035308.01.T01:CDS 50.0%
! CTCGGTGGATTTAAGCCAGT+TGG - Chr6:101840406-101840425 MsG0680035308.01.T01:CDS 50.0%
! GAGCAAGTTCAAGTGCTGCA+CGG - Chr6:101841575-101841594 MsG0680035308.01.T01:CDS 50.0%
CCTCGAACTCCGGAAGATCA+AGG + Chr6:101840841-101840860 None:intergenic 55.0%
CCTTGATCTTCCGGAGTTCG+AGG - Chr6:101840838-101840857 MsG0680035308.01.T01:CDS 55.0%
GGTGGAGGACCTTGATCTTC+CGG - Chr6:101840829-101840848 MsG0680035308.01.T01:CDS 55.0%
AAGGACATGCGACGAGACCG+AGG + Chr6:101839927-101839946 None:intergenic 60.0%
TGCGACGAGACCGAGGTTTG+TGG + Chr6:101839920-101839939 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 101839717 101841711 101839717 ID=MsG0680035308.01;Name=MsG0680035308.01
Chr6 mRNA 101839717 101841711 101839717 ID=MsG0680035308.01.T01;Parent=MsG0680035308.01;Name=MsG0680035308.01.T01;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|1|1|0|664
Chr6 exon 101839717 101841711 101839717 ID=MsG0680035308.01.T01:exon:10812;Parent=MsG0680035308.01.T01
Chr6 CDS 101839717 101841711 101839717 ID=MsG0680035308.01.T01:cds;Parent=MsG0680035308.01.T01
Gene Sequence

>MsG0680035308.01.T01

ATGGCAACTGATAACTCTACCAAGAGAAATTCCAATGTTCAGCTCCTTGAAGAACTAGAGGCTCTAAGTGATTCCCTTTACCAATCACACACAACAGCTAGAAGAGCAGCTTCTTTAGCTCTTCCAAGAAATTCAACTCCTGTTGCTGCATCTACTAAAGATGATAATGACACTGCTAAACTTGATAACAACAAAAACAGCCACAAACCTCGGTCTCGTCGCATGTCCTTATCTCCATGGAAATCAAAAACAAATCATGAAGATGCCAATGGAAAGTCACCCTCAACTCAATCAGAAAACAATAAGTTTGAATATGAAACAACAAACTCAGGTGACAACAAGAAAGGGATTTGGAATTGGAAACCTATTAGGGCTATTTCTCATATTGGAAAGCAGAAAATAAGCTGTTTGTTTTCTGTTGAAATTCTCACTGCTCAATCTCTTCCTTCATCAATGAATGGATTAAGACTTTCTGTTTGTGTTAGAAAGAAAGAGAATAAAGATGGTGCTGTTCAAACAATGCCATCAAGGGTTTCTCAAGGTGCTGCAGATTTTGAAGAAACACTTTTCTTAAGGTGTCATGTTTATTGCAATCAACAAGGTAATGGTAAAAATCTTAAATTTGAGCCAAGACCATTTTGGATATACCTTTTTGCAGTTGATGCTAAAGAGCTTGATTTTGGAAGAAACTCGGTGGATTTAAGCCAGTTGGTTCAAGAATCAATTGAGAAAAACCGGCAAGGAAATCGAGTTAGGCAGTGGGAAACAAGCTTTAGTTTGCAAGGAAAAGCTAAAGGAGGAGAGTTGGTTGTGAAACTAGGATTTCAAATCATGGGGAAAGATGGAGGAGTTGAAATATATAATAATGAAGAGAATTTGAAGCCTAGTAGTAGGTTCAAAAACCTCACATCTTCATTCGCTCGACGAAGATCCAAGACATCGTTTAGCATGCCTAGTCCAAGAATCACAAACAGAAATGATGCTTGGACTCCTTCACAGAGAAGATTAGCAGAAGATATTCAAGAAATCGATGATTTGAATCTTGATGATGATCCAAATATAGTTCATCATTCATATCCATCTACTAATAAACTTGTTGATGACAAAGAAAAGGTGGAGGACCTTGATCTTCCGGAGTTCGAGGTTGTCGATAGAGGAATTGAAGTTGAAGAGAAGAAAGAAGATGAAGGAGAAGGATCAGAGAAATCTATAGAAGTGAAATCACCTTCAAGTGAAATTGTCAAGGAAATAGTTCATGATCAATTACACTTAACAAGATTAAATGAGCTTGATTCACTTTCTAAGCAGATAAAGGCTCTTGAATCCATGATGGGAGAACATAGCAAAGATTTTGACACGGAATCACAACGATTGGATTCTGATGAAGAAAATGTTACAAGAGAGTTTCTTCATATGCTTGAGGATCAAAAGTCTAGATTATACAAACTCAACCAATCTGAAATTCCACCTTTGCATCTTGAAGAGCATGATGATAATTCTTCATCATGTGGAGAATCTAATTCTCAAGTGTATCTTCCTGACCTTGGAAAAGGTTTAGGTTGTGTGGTTCAAACAAGAGATGGAGGATACTTAGCATCTATGAATCCTTTAGACAATTATGTAGCTCGAAACGATACTCCAAAGCTAGCAATGCAAATGTCAAAGCCTTTTGTGTTAACATCACAAGACCCCTTAAATGGATTAGAGTTGTTTCAGAAACTGGCTGCAATTGATCTTGATGAACTCACCTCTCAAATTTTCTCATTGATGCCAATAGATGAACTGATAGGTAAAACTGCTGAACAGATTGCTTTTGAAGGCATAGCTTCTGCTATCATACAAGGTAGAAACAAAGAAGGAGCAAGTTCAAGTGCTGCACGGATAGTTTCGGCATTGAAAGACATGGCGAATGCAATGAGTTTAGGAAGACAAGAAAGGATTTCAACAGGAATTTGGAATGTTGATGACATTCCACTTACTGCAGAGAAATTCTAG

Protein sequence

>MsG0680035308.01.T01

MATDNSTKRNSNVQLLEELEALSDSLYQSHTTARRAASLALPRNSTPVAASTKDDNDTAKLDNNKNSHKPRSRRMSLSPWKSKTNHEDANGKSPSTQSENNKFEYETTNSGDNKKGIWNWKPIRAISHIGKQKISCLFSVEILTAQSLPSSMNGLRLSVCVRKKENKDGAVQTMPSRVSQGAADFEETLFLRCHVYCNQQGNGKNLKFEPRPFWIYLFAVDAKELDFGRNSVDLSQLVQESIEKNRQGNRVRQWETSFSLQGKAKGGELVVKLGFQIMGKDGGVEIYNNEENLKPSSRFKNLTSSFARRRSKTSFSMPSPRITNRNDAWTPSQRRLAEDIQEIDDLNLDDDPNIVHHSYPSTNKLVDDKEKVEDLDLPEFEVVDRGIEVEEKKEDEGEGSEKSIEVKSPSSEIVKEIVHDQLHLTRLNELDSLSKQIKALESMMGEHSKDFDTESQRLDSDEENVTREFLHMLEDQKSRLYKLNQSEIPPLHLEEHDDNSSSCGESNSQVYLPDLGKGLGCVVQTRDGGYLASMNPLDNYVARNDTPKLAMQMSKPFVLTSQDPLNGLELFQKLAAIDLDELTSQIFSLMPIDELIGKTAEQIAFEGIASAIIQGRNKEGASSSAARIVSALKDMANAMSLGRQERISTGIWNVDDIPLTAEKF*