AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045044.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045044.01.T01 MTR_8g063940 85.965 342 7 1 1 301 1 342 0.0 589
MsG0880045044.01.T01 MTR_5g034470 70.690 348 47 4 2 301 3 343 6.58e-174 484
MsG0880045044.01.T01 MTR_5g034470 68.328 341 53 4 2 294 3 336 1.27e-161 454
MsG0880045044.01.T01 MTR_3g091090 54.369 309 85 5 44 296 45 353 1.54e-112 330
MsG0880045044.01.T01 MTR_1g028360 52.941 306 90 5 44 296 53 357 3.67e-105 311
MsG0880045044.01.T01 MTR_3g078190 46.259 294 96 3 51 299 41 317 9.45e-93 278
MsG0880045044.01.T01 MTR_5g006140 34.911 169 101 7 89 252 101 265 8.37e-23 96.7
MsG0880045044.01.T01 MTR_5g006140 35.294 153 92 5 89 236 101 251 1.28e-22 94.7
MsG0880045044.01.T01 MTR_1g015300 31.176 170 109 6 90 254 109 275 1.79e-19 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045044.01.T01 AT1G23820 67.674 331 61 5 12 301 9 334 3.22e-157 442
MsG0880045044.01.T01 AT1G70310 64.723 343 76 3 1 301 1 340 3.39e-155 437
MsG0880045044.01.T01 AT1G23820 65.918 267 48 3 12 237 51 315 1.71e-119 346
MsG0880045044.01.T01 AT5G53120 54.545 308 82 5 48 298 49 355 1.77e-110 324
MsG0880045044.01.T01 AT5G53120 54.545 308 82 5 48 298 49 355 1.77e-110 324
MsG0880045044.01.T01 AT5G53120 54.545 308 82 5 48 298 49 355 1.77e-110 324
MsG0880045044.01.T01 AT5G53120 54.545 308 82 5 48 298 49 355 1.77e-110 324
MsG0880045044.01.T01 AT5G53120 54.545 308 82 5 48 298 49 355 1.77e-110 324
MsG0880045044.01.T01 AT5G53120 54.545 308 82 5 48 298 66 372 6.43e-110 323
MsG0880045044.01.T01 AT5G53120 65.672 201 67 2 99 298 183 382 9.00e-95 285
MsG0880045044.01.T01 AT5G53120 40.000 95 35 3 48 120 49 143 5.09e-11 63.2
MsG0880045044.01.T01 AT5G19530 29.231 195 126 7 90 279 110 297 1.69e-20 90.5
MsG0880045044.01.T01 AT5G19530 29.231 195 126 7 90 279 103 290 1.74e-20 90.5

Find 83 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGGAAGACCATGACTTTC+TGG 0.202805 8:+53167462 None:intergenic
ATCATCTCTTTGTCTCTTCA+TGG 0.223026 8:+53170946 None:intergenic
GAGAAGTAACTGTTTATTTC+AGG 0.232605 8:-53164278 MsG0880045044.01.T01:three_prime_UTR
GGTGTTTCATCTGTGATTCC+TGG 0.309804 8:-53170848 MsG0880045044.01.T01:CDS
GATGATGAAGAAGAGAATAA+TGG 0.312917 8:-53170929 MsG0880045044.01.T01:CDS
CCAGAAAGTCATGGTCTTCC+AGG 0.315838 8:-53167462 MsG0880045044.01.T01:intron
CAGGATAATGACAAAGTTGA+TGG 0.324169 8:-53164259 MsG0880045044.01.T01:three_prime_UTR
ATGATGAAGAAGAGAATAAT+GGG 0.324828 8:-53170928 MsG0880045044.01.T01:CDS
TTGGTTATTGGTGGAGGTGA+TGG 0.328542 8:-53166849 MsG0880045044.01.T01:CDS
GGAGAAATGGAATAGAATAA+AGG 0.345981 8:+53171091 None:intergenic
TTTGAAAATCTGACGACAAT+TGG 0.351640 8:+53165714 None:intergenic
TTGAGAAATTATTGGAGAAA+TGG 0.354209 8:+53171078 None:intergenic
ACTGCATCATAAGTTCCTTC+TGG 0.359338 8:+53165987 None:intergenic
GATGAAACACCATTACCATT+TGG 0.374994 8:+53170860 None:intergenic
CATTTGTGAAATTGACAATA+TGG 0.376368 8:-53166778 MsG0880045044.01.T01:CDS
CATGGCTGCTGCAGAGAGTA+TGG 0.377150 8:-53170984 MsG0880045044.01.T01:CDS
TTAAACCCTACTGCAACTTC+AGG 0.398829 8:+53166346 None:intergenic
AGGCTCTGTTTGGCTTTGAC+TGG 0.400351 8:+53171047 None:intergenic
GCACTCAGGCTGAAAGTATA+TGG 0.405219 8:-53165768 MsG0880045044.01.T01:CDS
GAGAAATGGAATAGAATAAA+GGG 0.406818 8:+53171092 None:intergenic
ATGAAACACCATTACCATTT+GGG 0.414247 8:+53170861 None:intergenic
AACTTATGATGCAGTTATAG+TGG 0.422946 8:-53165979 MsG0880045044.01.T01:CDS
TTATTAGCTAAGGCTCTGTT+TGG 0.426988 8:+53171037 None:intergenic
TACTTCTCGACATCAAATTT+AGG 0.427367 8:+53164293 None:intergenic
GTTATTGGTGGAGGTGATGG+TGG 0.427899 8:-53166846 MsG0880045044.01.T01:CDS
GGAATAGAATAAAGGGAAAA+GGG 0.431475 8:+53171099 None:intergenic
GTGGATTCATCTGATCCTAT+TGG 0.434928 8:-53165960 MsG0880045044.01.T01:intron
AAAACTAACCTGGCCACATT+GGG 0.439033 8:+53170807 None:intergenic
TGGAATAGAATAAAGGGAAA+AGG 0.440441 8:+53171098 None:intergenic
AAAGGGAAAAGGGTGTTGTA+TGG 0.453264 8:+53171109 None:intergenic
CGAGTAAAAGATATGAATGA+TGG 0.469620 8:+53164354 None:intergenic
TGCAGAGAGTATGGTGGAAC+TGG 0.481978 8:-53170975 MsG0880045044.01.T01:CDS
TATGTTGAAACATGATTAGC+TGG 0.482503 8:-53164197 MsG0880045044.01.T01:three_prime_UTR
TGAAAGTATATGGCTTCATA+TGG 0.483697 8:-53165758 MsG0880045044.01.T01:CDS
AAGGCTCTGTCAATTATGCT+TGG 0.485127 8:-53165693 MsG0880045044.01.T01:CDS
TTTCTCTGAATTATTAGCTA+AGG 0.490717 8:+53171027 None:intergenic
AAAACATACCTTGGATATGT+AGG 0.492840 8:+53165661 None:intergenic
GAAATTAGCCCAATGTGGCC+AGG 0.496157 8:-53170815 MsG0880045044.01.T01:intron
GTGTTTCATCTGTGATTCCT+GGG 0.503605 8:-53170847 MsG0880045044.01.T01:CDS
TCGTTTGCGAGGAGGAAGAT+TGG 0.509808 8:-53164437 MsG0880045044.01.T01:CDS
AAGGGAAAAGGGTGTTGTAT+GGG 0.511496 8:+53171110 None:intergenic
GTGGCAAGGGCTCTTCGTCC+AGG 0.512123 8:-53165802 MsG0880045044.01.T01:CDS
TGTTGAAGGTGGTGGTGATA+AGG 0.524499 8:-53170885 MsG0880045044.01.T01:CDS
TGAGTGCACATAACTCCTCC+TGG 0.525919 8:+53165784 None:intergenic
CAAACATCCAGTGAATCCTA+TGG 0.529311 8:-53164648 MsG0880045044.01.T01:CDS
TAAACCCTACTGCAACTTCA+GGG 0.530870 8:+53166347 None:intergenic
GCTTCATATGGATATAATTG+AGG 0.531349 8:-53165746 MsG0880045044.01.T01:CDS
GTTTCAACAATGGATGTTGA+AGG 0.531892 8:-53170899 MsG0880045044.01.T01:CDS
TTTATGCTTTGCTCAACTGA+GGG 0.534590 8:-53164686 MsG0880045044.01.T01:CDS
TATGGGTGAGACTAGTGGAA+TGG 0.538921 8:+53171127 None:intergenic
TGGGGTTTCTGTTTCAACAA+TGG 0.540223 8:-53170909 MsG0880045044.01.T01:CDS
ATATCCTTAAGGTCCTGCTC+AGG 0.540360 8:-53165854 MsG0880045044.01.T01:intron
TTAGGCACCGACTTATTCCA+TGG 0.563264 8:+53164311 None:intergenic
CTCGATTGGTCATCTATCAA+CGG 0.564251 8:-53164335 MsG0880045044.01.T01:three_prime_UTR
ATCTCTTTGTCTCTTCATGG+AGG 0.564464 8:+53170949 None:intergenic
GGTGGTGATAAGGACCCAAA+TGG 0.579962 8:-53170875 MsG0880045044.01.T01:CDS
TCTGTTTGCCGTCGTTTGCG+AGG 0.581679 8:-53164448 MsG0880045044.01.T01:CDS
TGTTGTATGGGTGAGACTAG+TGG 0.594687 8:+53171122 None:intergenic
GATAAGGACCCAAATGGTAA+TGG 0.604632 8:-53170869 MsG0880045044.01.T01:CDS
TCAGAGTTGTAAAATTTGAG+TGG 0.611670 8:+53164596 None:intergenic
CCACGTGTGACTCTTCGCAT+TGG 0.612172 8:-53166319 MsG0880045044.01.T01:CDS
GTGACTCTTCGCATTGGTGA+TGG 0.620618 8:-53166313 MsG0880045044.01.T01:intron
AGGAGGAGTTATGTGCACTC+AGG 0.621343 8:-53165782 MsG0880045044.01.T01:CDS
GTTTGCCGTCGTTTGCGAGG+AGG 0.626127 8:-53164445 MsG0880045044.01.T01:CDS
TGAGCTCAAAGTAGCTCATG+TGG 0.628171 8:-53164387 MsG0880045044.01.T01:three_prime_UTR
CAACGGACCATGGAATAAGT+CGG 0.630265 8:-53164318 MsG0880045044.01.T01:three_prime_UTR
CTACAGTTCCTACATATCCA+AGG 0.636790 8:-53165669 MsG0880045044.01.T01:intron
GGTCATCTATCAACGGACCA+TGG 0.641202 8:-53164328 MsG0880045044.01.T01:three_prime_UTR
TAATCATGTTTCAACATATG+CGG 0.643176 8:+53164202 None:intergenic
GTCAGATTACCAGAAAGTCA+TGG 0.643976 8:-53167471 MsG0880045044.01.T01:CDS
ATCTTCCTCCTCGCAAACGA+CGG 0.645194 8:+53164440 None:intergenic
AATGACGTGCTACTTCTCGC+AGG 0.646893 8:+53166820 None:intergenic
GTGAGACTAGTGGAATGGAA+AGG 0.652688 8:+53171132 None:intergenic
TTTCATCTGTGATTCCTGGG+TGG 0.656590 8:-53170844 MsG0880045044.01.T01:CDS
ACAATGGATGTTGAAGGTGG+TGG 0.657096 8:-53170893 MsG0880045044.01.T01:CDS
GCAAGGGCTCTTCGTCCAGG+AGG 0.657812 8:-53165799 MsG0880045044.01.T01:CDS
TGATGAAGAAGAGAATAATG+GGG 0.657977 8:-53170927 MsG0880045044.01.T01:CDS
GGATGTTTGAAATCAACAAG+AGG 0.663795 8:+53164662 None:intergenic
TTTCTGAAATTAGCCCAATG+TGG 0.672641 8:-53170820 MsG0880045044.01.T01:CDS
CTAATTTCAGAAAACCACCC+AGG 0.684797 8:+53170830 None:intergenic
TCAACAATGGATGTTGAAGG+TGG 0.691448 8:-53170896 MsG0880045044.01.T01:CDS
GGCTGCTGCAGAGAGTATGG+TGG 0.698354 8:-53170981 MsG0880045044.01.T01:CDS
CCAATGCGAAGAGTCACACG+TGG 0.702718 8:+53166319 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG + Chr8:53166489-53166470 None:intergenic 0.0%
!! AAATTAAACACAAATATTTA+AGG + Chr8:53169011-53169030 None:intergenic 10.0%
!! CTTCAAAAAAAAAAAATAAT+AGG + Chr8:53170050-53170069 None:intergenic 10.0%
!! TTGATAGAATATATATTTAA+CGG - Chr8:53166621-53166640 MsG0880045044.01.T01:intron 10.0%
!!! TATTTTTGACAAAATAAATT+CGG - Chr8:53167672-53167691 MsG0880045044.01.T01:intron 10.0%
!! AAAAAAAGTTTATATCACTT+AGG + Chr8:53169373-53169392 None:intergenic 15.0%
!! ATAATTCAAATTGAATCAAT+TGG - Chr8:53166657-53166676 MsG0880045044.01.T01:intron 15.0%
!! CATCCATTAAATATAATAAA+CGG + Chr8:53167001-53167020 None:intergenic 15.0%
!! CATTCATTAGATATAATAAA+CGG - Chr8:53166143-53166162 MsG0880045044.01.T01:intron 15.0%
!! CTACATCAAATAAAAAAAAT+TGG + Chr8:53168760-53168779 None:intergenic 15.0%
!!! AAAAGTTTTTTTTTCTTTCA+TGG - Chr8:53164271-53164290 MsG0880045044.01.T01:three_prime_UTR 15.0%
!!! AATAACATGATTTTAAATTG+TGG - Chr8:53168574-53168593 MsG0880045044.01.T01:intron 15.0%
!!! ATATTTTTATATTGTGATTC+TGG + Chr8:53168676-53168695 None:intergenic 15.0%
!!! CAAAATAATAAAATTTTGTG+TGG + Chr8:53168538-53168557 None:intergenic 15.0%
!!! CAATTTTTTTTATTTGATGT+AGG - Chr8:53168758-53168777 MsG0880045044.01.T01:intron 15.0%
!!! TAATTTTTATCTTCATCATT+TGG - Chr8:53170752-53170771 MsG0880045044.01.T01:intron 15.0%
!!! TTTCATTTTTTTGTTATAGT+GGG - Chr8:53170555-53170574 MsG0880045044.01.T01:intron 15.0%
!!! TTTTATGATTGAGAAATTAT+TGG + Chr8:53164206-53164225 None:intergenic 15.0%
!! AAAATTCCATGATATAAACA+CGG - Chr8:53169790-53169809 MsG0880045044.01.T01:intron 20.0%
!! AAAGACAAAAAACGATAAAA+AGG + Chr8:53170429-53170448 None:intergenic 20.0%
!! AAATGAAAGAAATATTACGA+TGG + Chr8:53170543-53170562 None:intergenic 20.0%
!! AAGCCGTTTATTATATTTAA+TGG - Chr8:53166995-53167014 MsG0880045044.01.T01:intron 20.0%
!! AAGTAATTGAATGTAATAAC+AGG + Chr8:53164858-53164877 None:intergenic 20.0%
!! AATAAAAGAAAAAGTAGGAA+AGG + Chr8:53166329-53166348 None:intergenic 20.0%
!! ACCTGTAATAATTAATACAT+AGG + Chr8:53170111-53170130 None:intergenic 20.0%
!! CGTTATATTTAATATCCTTA+AGG - Chr8:53169408-53169427 MsG0880045044.01.T01:intron 20.0%
!! CTTATTGTGTTTAAACTTAT+TGG - Chr8:53164972-53164991 MsG0880045044.01.T01:intron 20.0%
!! GAAAACAAGATTATAATAGA+AGG - Chr8:53166295-53166314 MsG0880045044.01.T01:intron 20.0%
!! TCCTATGTATTAATTATTAC+AGG - Chr8:53170107-53170126 MsG0880045044.01.T01:intron 20.0%
!! TGATCAATAAAAGAAAAAGT+AGG + Chr8:53166334-53166353 None:intergenic 20.0%
!! TGCCATTATTAAAAAAACAT+AGG + Chr8:53170079-53170098 None:intergenic 20.0%
!! TTATTACAGGTTAAGTTTAT+AGG - Chr8:53170120-53170139 MsG0880045044.01.T01:intron 20.0%
!!! AAAATCATGTTATTTAGCTT+AGG + Chr8:53168568-53168587 None:intergenic 20.0%
!!! ATAGAAAAGATTTTGTTTCA+AGG - Chr8:53167776-53167795 MsG0880045044.01.T01:intron 20.0%
!!! ATGTTTTTTTAATAATGGCA+AGG - Chr8:53170079-53170098 MsG0880045044.01.T01:intron 20.0%
!!! CATGATTATTTTGCATAAAT+GGG - Chr8:53167168-53167187 MsG0880045044.01.T01:intron 20.0%
!!! CTCCTATGTTTTTTTAATAA+TGG - Chr8:53170074-53170093 MsG0880045044.01.T01:intron 20.0%
!!! CTCTGTATATATTTTTTACT+GGG - Chr8:53167349-53167368 MsG0880045044.01.T01:intron 20.0%
!!! CTTTCATTTTTTTGTTATAG+TGG - Chr8:53170554-53170573 MsG0880045044.01.T01:intron 20.0%
!!! TAAGATTTAATTTACAACCA+TGG + Chr8:53166270-53166289 None:intergenic 20.0%
!!! TAATTTTCTGTTTTAGGTTT+TGG - Chr8:53168405-53168424 MsG0880045044.01.T01:intron 20.0%
!!! TCATGATTATTTTGCATAAA+TGG - Chr8:53167167-53167186 MsG0880045044.01.T01:intron 20.0%
!!! TCTTCAGATTATCTTTTTAT+CGG - Chr8:53167550-53167569 MsG0880045044.01.T01:intron 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG - Chr8:53165171-53165190 MsG0880045044.01.T01:intron 20.0%
!!! TTATTCTGTTCTTTTTTAGT+CGG - Chr8:53168809-53168828 MsG0880045044.01.T01:intron 20.0%
! AAAACTCATGAATTAAACTC+TGG - Chr8:53167719-53167738 MsG0880045044.01.T01:intron 25.0%
! AAATCACAAATTCAAGTCAT+AGG - Chr8:53169678-53169697 MsG0880045044.01.T01:intron 25.0%
! AAATTTCATATCTATGACCA+GGG + Chr8:53165859-53165878 None:intergenic 25.0%
! AATTTCATATGACCAATTTG+CGG + Chr8:53170159-53170178 None:intergenic 25.0%
! ACAAGATTATAATAGAAGGA+AGG - Chr8:53166299-53166318 MsG0880045044.01.T01:intron 25.0%
! ACTATTGTGTTTAAACTTGT+TGG - Chr8:53164701-53164720 MsG0880045044.01.T01:CDS 25.0%
! AGCAAAATTTCAATGCAAAT+CGG - Chr8:53170191-53170210 MsG0880045044.01.T01:intron 25.0%
! ATAAATATGACTTCTCAATG+AGG + Chr8:53169213-53169232 None:intergenic 25.0%
! ATCAATGATCTTAACTGTTT+GGG - Chr8:53167121-53167140 MsG0880045044.01.T01:intron 25.0%
! ATGATGAAGAAGAGAATAAT+GGG - Chr8:53164345-53164364 MsG0880045044.01.T01:three_prime_UTR 25.0%
! ATGCCTTTCTATATATTTAC+AGG + Chr8:53167197-53167216 None:intergenic 25.0%
! ATGTATGGAATATATGACAA+AGG + Chr8:53166739-53166758 None:intergenic 25.0%
! ATTTCCAGTGTTATAATTTG+CGG - Chr8:53165516-53165535 MsG0880045044.01.T01:intron 25.0%
! CATTTGTGAAATTGACAATA+TGG - Chr8:53168495-53168514 MsG0880045044.01.T01:intron 25.0%
! CTAACAAAAGAATATTTGCT+TGG + Chr8:53167436-53167455 None:intergenic 25.0%
! GAAAGAAAAAAAAACTAACC+TGG + Chr8:53164479-53164498 None:intergenic 25.0%
! GAGAAATGGAATAGAATAAA+GGG + Chr8:53164184-53164203 None:intergenic 25.0%
! GTAAAAAATCTTTACACTGA+CGG - Chr8:53169156-53169175 MsG0880045044.01.T01:intron 25.0%
! TAAATTTCATATCTATGACC+AGG + Chr8:53166061-53166080 None:intergenic 25.0%
! TAATCATGTTTCAACATATG+CGG + Chr8:53171074-53171093 None:intergenic 25.0%
! TAGATTACAAAAACATACCT+TGG + Chr8:53169624-53169643 None:intergenic 25.0%
! TAGTTACTATTTGACAACAT+TGG - Chr8:53165679-53165698 MsG0880045044.01.T01:CDS 25.0%
! TATATTCCATACATAAGACT+AGG - Chr8:53166745-53166764 MsG0880045044.01.T01:intron 25.0%
! TATCAATGATCTTAACTGTT+TGG - Chr8:53167120-53167139 MsG0880045044.01.T01:intron 25.0%
! TGGTCATAGATATGAAATTT+AGG - Chr8:53165859-53165878 MsG0880045044.01.T01:intron 25.0%
! TTAAGGAAACATATTAGTGT+AGG + Chr8:53168994-53169013 None:intergenic 25.0%
! TTCAGTGTAACTATAAATGT+CGG + Chr8:53165146-53165165 None:intergenic 25.0%
! TTGAGAAATTATTGGAGAAA+TGG + Chr8:53164198-53164217 None:intergenic 25.0%
! TTGTATTAAATAGCGTATCT+TGG - Chr8:53170304-53170323 MsG0880045044.01.T01:intron 25.0%
! TTGTCAAATAGTAACTACAT+CGG + Chr8:53165676-53165695 None:intergenic 25.0%
! TTTATAACCAACATGCAAAA+GGG + Chr8:53164508-53164527 None:intergenic 25.0%
! TTTCTCTGAATTATTAGCTA+AGG + Chr8:53164249-53164268 None:intergenic 25.0%
!! AAGTATAAATGACCTTTTTG+GGG + Chr8:53168050-53168069 None:intergenic 25.0%
!! ATTCATATCTTTTACTCGAT+TGG - Chr8:53170924-53170943 MsG0880045044.01.T01:CDS 25.0%
!! ATTTGCATTGAAATTTTGCT+TGG + Chr8:53170191-53170210 None:intergenic 25.0%
!! CAAAATCTTTTCTATCTTCA+AGG + Chr8:53167771-53167790 None:intergenic 25.0%
!! CAATTTGTTTAAATTCCTCT+AGG - Chr8:53165642-53165661 MsG0880045044.01.T01:intron 25.0%
!! GAAGTATAAATGACCTTTTT+GGG + Chr8:53168051-53168070 None:intergenic 25.0%
!! GACAAAATAAATTCGGTTTT+TGG - Chr8:53167679-53167698 MsG0880045044.01.T01:intron 25.0%
!! GTGTTTATATCATGGAATTT+TGG + Chr8:53169791-53169810 None:intergenic 25.0%
!! TATTGACTAAATTATCTTGC+TGG - Chr8:53168693-53168712 MsG0880045044.01.T01:intron 25.0%
!! TATTTAACGGATCTATCTTT+CGG - Chr8:53166634-53166653 MsG0880045044.01.T01:intron 25.0%
!! TATTTGCATCAAACTTTTGA+AGG - Chr8:53166545-53166564 MsG0880045044.01.T01:intron 25.0%
!! TCACTGTAATTTTCTGTTTT+AGG - Chr8:53168399-53168418 MsG0880045044.01.T01:intron 25.0%
!! TTTGCATTGAAATTTTGCTT+GGG + Chr8:53170190-53170209 None:intergenic 25.0%
!! TTTTATAACCAACATGCAAA+AGG + Chr8:53164509-53164528 None:intergenic 25.0%
!!! ACTTAACTTGTATTGGTTTT+TGG - Chr8:53165021-53165040 MsG0880045044.01.T01:intron 25.0%
!!! AGAAGTATAAATGACCTTTT+TGG + Chr8:53168052-53168071 None:intergenic 25.0%
!!! ATGGAAAACTTAACTTGTAT+TGG - Chr8:53165014-53165033 MsG0880045044.01.T01:intron 25.0%
!!! CTTAACTTGTATTGGTTTTT+GGG - Chr8:53165022-53165041 MsG0880045044.01.T01:intron 25.0%
!!! GCAAATTTTTCTAAGGATTT+TGG + Chr8:53167643-53167662 None:intergenic 25.0%
!!! GCTCTGTATATATTTTTTAC+TGG - Chr8:53167348-53167367 MsG0880045044.01.T01:intron 25.0%
!!! TAACATACCCTTTTCTAAAA+CGG - Chr8:53169931-53169950 MsG0880045044.01.T01:intron 25.0%
!!! TATTGGTTTGTGTTTTTGTA+TGG - Chr8:53164989-53165008 MsG0880045044.01.T01:intron 25.0%
!!! TTTGTGTTTTTGTATGGTTA+TGG - Chr8:53164724-53164743 MsG0880045044.01.T01:intron 25.0%
!!! TTTTTGTCTTTATTTCCTCT+AGG - Chr8:53170438-53170457 MsG0880045044.01.T01:intron 25.0%
!!! TTTTTTGTTATACCAATCCT+AGG - Chr8:53167467-53167486 MsG0880045044.01.T01:CDS 25.0%
AAAACATACCTTGGATATGT+AGG + Chr8:53169615-53169634 None:intergenic 30.0%
AAAGTATAGTCTCTATTGCT+CGG - Chr8:53168837-53168856 MsG0880045044.01.T01:intron 30.0%
AACTTATGATGCAGTTATAG+TGG - Chr8:53169294-53169313 MsG0880045044.01.T01:intron 30.0%
AACTTCAGGGAAAAATTGTT+TGG + Chr8:53168916-53168935 None:intergenic 30.0%
AAGATAAGATTGTCCACAAT+AGG - Chr8:53169730-53169749 MsG0880045044.01.T01:intron 30.0%
AATACATAGCAATCTTTGCA+AGG + Chr8:53167295-53167314 None:intergenic 30.0%
AATGTTGAGATGGTGAAATA+CGG - Chr8:53166787-53166806 MsG0880045044.01.T01:CDS 30.0%
ACATAGTTGAGTTCATCTTA+TGG - Chr8:53167579-53167598 MsG0880045044.01.T01:intron 30.0%
AGAGAGGTTCAATGATAAAA+CGG + Chr8:53167319-53167338 None:intergenic 30.0%
AGTATTGCATATTGGATTAC+TGG + Chr8:53170353-53170372 None:intergenic 30.0%
ATATAGACATAAGTCCAGTT+TGG + Chr8:53168312-53168331 None:intergenic 30.0%
ATGAAACACCATTACCATTT+GGG + Chr8:53164415-53164434 None:intergenic 30.0%
ATGGTAATTATACCGCAAAT+TGG - Chr8:53170144-53170163 MsG0880045044.01.T01:intron 30.0%
CAAACAGGGAAATAGAAAAA+GGG + Chr8:53170009-53170028 None:intergenic 30.0%
CAAATTTCATATCTATGACC+AGG + Chr8:53165860-53165879 None:intergenic 30.0%
CAACATTTCTCTTCTCAAAT+AGG + Chr8:53169651-53169670 None:intergenic 30.0%
CAATAAATAAGAGTTCTCAC+CGG - Chr8:53167044-53167063 MsG0880045044.01.T01:intron 30.0%
CATAAAATTGAACACAGATG+AGG + Chr8:53168630-53168649 None:intergenic 30.0%
CATTTACAAACATTTGCAAG+AGG + Chr8:53169709-53169728 None:intergenic 30.0%
CGAGTAAAAGATATGAATGA+TGG + Chr8:53170922-53170941 None:intergenic 30.0%
CTATTTGAGAAGAGAAATGT+TGG - Chr8:53169649-53169668 MsG0880045044.01.T01:intron 30.0%
GAGAAGTAACTGTTTATTTC+AGG - Chr8:53170995-53171014 MsG0880045044.01.T01:exon 30.0%
GATGATGAAGAAGAGAATAA+TGG - Chr8:53164344-53164363 MsG0880045044.01.T01:three_prime_UTR 30.0%
GCTTCATATGGATATAATTG+AGG - Chr8:53169527-53169546 MsG0880045044.01.T01:intron 30.0%
GGAATAGAATAAAGGGAAAA+GGG + Chr8:53164177-53164196 None:intergenic 30.0%
GGAGAAATGGAATAGAATAA+AGG + Chr8:53164185-53164204 None:intergenic 30.0%
GTATTGCATATTGGATTACT+GGG + Chr8:53170352-53170371 None:intergenic 30.0%
TAATCACACAGACATATAAC+AGG + Chr8:53165727-53165746 None:intergenic 30.0%
TAATTTACAACCATGGAGAA+AGG + Chr8:53166263-53166282 None:intergenic 30.0%
TACTTCTCGACATCAAATTT+AGG + Chr8:53170983-53171002 None:intergenic 30.0%
TATGGAATATATGACAAAGG+TGG + Chr8:53166736-53166755 None:intergenic 30.0%
TATGTTGAAACATGATTAGC+TGG - Chr8:53171076-53171095 MsG0880045044.01.T01:five_prime_UTR 30.0%
TATTGATCGTCATGTCATAT+AGG + Chr8:53166697-53166716 None:intergenic 30.0%
TCAAACAGGGAAATAGAAAA+AGG + Chr8:53170010-53170029 None:intergenic 30.0%
TCAGAGTTGTAAAATTTGAG+TGG + Chr8:53170680-53170699 None:intergenic 30.0%
TGATGAAGAAGAGAATAATG+GGG - Chr8:53164346-53164365 MsG0880045044.01.T01:three_prime_UTR 30.0%
TGGAATAGAATAAAGGGAAA+AGG + Chr8:53164178-53164197 None:intergenic 30.0%
TTAAATTGTGGTCACAACTA+TGG - Chr8:53168586-53168605 MsG0880045044.01.T01:intron 30.0%
TTATATGTCTGTGTGATTAG+TGG - Chr8:53165728-53165747 MsG0880045044.01.T01:CDS 30.0%
TTCACAACTTGGAATTGATT+TGG - Chr8:53166363-53166382 MsG0880045044.01.T01:CDS 30.0%
TTCTTTGACATATGAACATG+TGG - Chr8:53165773-53165792 MsG0880045044.01.T01:CDS 30.0%
TTGAATGTAATAACAGGTGT+TGG + Chr8:53164852-53164871 None:intergenic 30.0%
TTGATTCAATACGTGTATGT+AGG + Chr8:53165448-53165467 None:intergenic 30.0%
TTTGAAAATCTGACGACAAT+TGG + Chr8:53169562-53169581 None:intergenic 30.0%
! AAAGCACTAGTATTGCATAT+TGG + Chr8:53170361-53170380 None:intergenic 30.0%
! AATTGTCGTCAGATTTTCAA+AGG - Chr8:53169561-53169580 MsG0880045044.01.T01:intron 30.0%
! ACTCAAATTTTACAACTCTG+AGG - Chr8:53170679-53170698 MsG0880045044.01.T01:intron 30.0%
! ACTGTGTGCAAATTTTTCTA+AGG + Chr8:53167650-53167669 None:intergenic 30.0%
! AGAATCTTCTCAGTTTTCTT+TGG + Chr8:53170864-53170883 None:intergenic 30.0%
! ATACTACTCTTTTTGTGTTG+AGG - Chr8:53170496-53170515 MsG0880045044.01.T01:intron 30.0%
! ATTGAGTTGTTTATCCAAAC+TGG - Chr8:53168295-53168314 MsG0880045044.01.T01:intron 30.0%
! GAAATACGGATTTGAAACAA+GGG - Chr8:53166801-53166820 MsG0880045044.01.T01:CDS 30.0%
! GATGTAGGATTTTCTACTTA+GGG - Chr8:53168773-53168792 MsG0880045044.01.T01:intron 30.0%
! GATTTTCTACTTAGGGAAAT+TGG - Chr8:53168780-53168799 MsG0880045044.01.T01:intron 30.0%
! TCACAACTTGGAATTGATTT+GGG - Chr8:53166364-53166383 MsG0880045044.01.T01:CDS 30.0%
! TGAAAGTATATGGCTTCATA+TGG - Chr8:53169515-53169534 MsG0880045044.01.T01:intron 30.0%
! TGAAATACGGATTTGAAACA+AGG - Chr8:53166800-53166819 MsG0880045044.01.T01:CDS 30.0%
! TGATGTAGGATTTTCTACTT+AGG - Chr8:53168772-53168791 MsG0880045044.01.T01:intron 30.0%
! TTCTTTTATTGATCAGCAAC+AGG - Chr8:53166339-53166358 MsG0880045044.01.T01:CDS 30.0%
! TTGCATTGAAATTTTGCTTG+GGG + Chr8:53170189-53170208 None:intergenic 30.0%
! TTTGTAGGTATTGTACAGAA+GGG - Chr8:53166877-53166896 MsG0880045044.01.T01:intron 30.0%
!! AGAAAAATAGCGGATACAAT+AGG - Chr8:53169837-53169856 MsG0880045044.01.T01:intron 30.0%
!! ATTTGGGGATTTGATTTTGT+TGG - Chr8:53166380-53166399 MsG0880045044.01.T01:intron 30.0%
!! GAAAAATAGCGGATACAATA+GGG - Chr8:53169838-53169857 MsG0880045044.01.T01:intron 30.0%
!! GATTATTTTGCATAAATGGG+CGG - Chr8:53167171-53167190 MsG0880045044.01.T01:intron 30.0%
!! TAATGTGTCAGTGTTGTTTA+CGG - Chr8:53164643-53164662 MsG0880045044.01.T01:CDS 30.0%
!! TTATGTTTAGTTCTGTGTAG+CGG - Chr8:53164770-53164789 MsG0880045044.01.T01:intron 30.0%
!! TTTTGTTATAGTGGGATGAT+TGG - Chr8:53170563-53170582 MsG0880045044.01.T01:intron 30.0%
!!! AACATACCCTTTTCTAAAAC+GGG - Chr8:53169932-53169951 MsG0880045044.01.T01:intron 30.0%
!!! CTGTTTTAGGTTTTGGTTAT+TGG - Chr8:53168412-53168431 MsG0880045044.01.T01:intron 30.0%
!!! TGTTGGTTTGTGTTTTTGTA+TGG - Chr8:53164718-53164737 MsG0880045044.01.T01:intron 30.0%
!!! TTGGTTAAGCCATTTTTTCT+TGG - Chr8:53165810-53165829 MsG0880045044.01.T01:CDS 30.0%
!!! TTTTAGGTTTTGGTTATTGG+TGG - Chr8:53168415-53168434 MsG0880045044.01.T01:intron 30.0%
!!! TTTTTGGGTTCAACTTAATG+TGG - Chr8:53165037-53165056 MsG0880045044.01.T01:intron 30.0%
AAACCCATACAATGTTGAGA+TGG - Chr8:53166777-53166796 MsG0880045044.01.T01:CDS 35.0%
AACGAAGGAAATGCAAAAGA+TGG + Chr8:53170718-53170737 None:intergenic 35.0%
AACGATAAAAAGGCAACAAG+AGG + Chr8:53170419-53170438 None:intergenic 35.0%
ACAGGTTAAGTTTATAGGCA+TGG - Chr8:53170125-53170144 MsG0880045044.01.T01:intron 35.0%
AGGCTGTTTGAGAAAACTTA+TGG - Chr8:53168178-53168197 MsG0880045044.01.T01:intron 35.0%
AGTTATTCAGCTCACAGAAA+GGG - Chr8:53167969-53167988 MsG0880045044.01.T01:intron 35.0%
ATCATCTCTTTGTCTCTTCA+TGG + Chr8:53164330-53164349 None:intergenic 35.0%
ATGAGTGATCATTTCTTGGT+AGG + Chr8:53168004-53168023 None:intergenic 35.0%
CAGGATAATGACAAAGTTGA+TGG - Chr8:53171014-53171033 MsG0880045044.01.T01:five_prime_UTR 35.0%
CATATGAACATGTGGTAGTT+TGG - Chr8:53165781-53165800 MsG0880045044.01.T01:CDS 35.0%
CGGCCTGTAAATATATAGAA+AGG - Chr8:53167191-53167210 MsG0880045044.01.T01:intron 35.0%
CTAACACCGTGTTTATATCA+TGG + Chr8:53169799-53169818 None:intergenic 35.0%
GACAAAAAGTGGAAACGATT+TGG + Chr8:53166214-53166233 None:intergenic 35.0%
GAGAGGTTCAATGATAAAAC+GGG + Chr8:53167318-53167337 None:intergenic 35.0%
GATGAAACACCATTACCATT+TGG + Chr8:53164416-53164435 None:intergenic 35.0%
GATTCATAGGTTTAGTTGCT+GGG - Chr8:53164942-53164961 MsG0880045044.01.T01:intron 35.0%
GTAAACTAGATCGAAGACAA+TGG + Chr8:53167494-53167513 None:intergenic 35.0%
GTAGATGAGTGATCATTTCT+TGG + Chr8:53168008-53168027 None:intergenic 35.0%
GTTATAGAATCAATGCGTAG+CGG + Chr8:53170261-53170280 None:intergenic 35.0%
GTTTCAACAATGGATGTTGA+AGG - Chr8:53164374-53164393 MsG0880045044.01.T01:three_prime_UTR 35.0%
TAATGTGGAGCTATAAACCA+CGG - Chr8:53165052-53165071 MsG0880045044.01.T01:intron 35.0%
TACACATGTAGCATACCAAT+AGG + Chr8:53169331-53169350 None:intergenic 35.0%
TATAAACCACGGACACTTAT+TGG - Chr8:53165063-53165082 MsG0880045044.01.T01:intron 35.0%
TATACGTGTCAGTGATTCAT+AGG - Chr8:53164929-53164948 MsG0880045044.01.T01:intron 35.0%
TCACCATCTCAACATTGTAT+GGG + Chr8:53166783-53166802 None:intergenic 35.0%
TCTCAAATTATTAGCGGTGT+CGG - Chr8:53165177-53165196 MsG0880045044.01.T01:intron 35.0%
TGAGTGAAGAGATTTGGATT+TGG - Chr8:53165270-53165289 MsG0880045044.01.T01:intron 35.0%
TGATCCGCAAATTATAACAC+TGG + Chr8:53165523-53165542 None:intergenic 35.0%
TGATTCATAGGTTTAGTTGC+TGG - Chr8:53164941-53164960 MsG0880045044.01.T01:intron 35.0%
TGTCAAATAACAGCTACTGT+GGG + Chr8:53165586-53165605 None:intergenic 35.0%
TGTCAAATAGCCACCATTAT+TGG + Chr8:53169901-53169920 None:intergenic 35.0%
TGTTAGTGTGTTATGGTCTA+TGG - Chr8:53169813-53169832 MsG0880045044.01.T01:intron 35.0%
TTATTAGCTAAGGCTCTGTT+TGG + Chr8:53164239-53164258 None:intergenic 35.0%
TTCACCATCTCAACATTGTA+TGG + Chr8:53166784-53166803 None:intergenic 35.0%
TTCAGAATCAGAGTGCAAAA+CGG + Chr8:53165356-53165375 None:intergenic 35.0%
TTGTCAAATAACAGCTACTG+TGG + Chr8:53165587-53165606 None:intergenic 35.0%
TTTATGCTTTGCTCAACTGA+GGG - Chr8:53170587-53170606 MsG0880045044.01.T01:intron 35.0%
! AAAAAGTGGAAACGATTTGG+TGG + Chr8:53166211-53166230 None:intergenic 35.0%
! ACGTCTTCAATAAGAAGTGT+CGG + Chr8:53164567-53164586 None:intergenic 35.0%
! CAGTATGAATCTGGAATTGA+AGG + Chr8:53170799-53170818 None:intergenic 35.0%
! CTTTTGCAGTCATCAACATA+TGG - Chr8:53167925-53167944 MsG0880045044.01.T01:intron 35.0%
! GGATGTTTGAAATCAACAAG+AGG + Chr8:53170614-53170633 None:intergenic 35.0%
! GTTTGTAGGTATTGTACAGA+AGG - Chr8:53166876-53166895 MsG0880045044.01.T01:intron 35.0%
! TAGGTGTTACCAATAGCAAA+TGG - Chr8:53169749-53169768 MsG0880045044.01.T01:intron 35.0%
! TCTAGGAGTTGCATTTTTGA+AGG - Chr8:53169258-53169277 MsG0880045044.01.T01:intron 35.0%
! TGACATTCGTTTTCATCCAT+AGG + Chr8:53170644-53170663 None:intergenic 35.0%
! TGCACTCTGATTCTGAAAAT+TGG - Chr8:53165359-53165378 MsG0880045044.01.T01:intron 35.0%
! TGCATTGAAATTTTGCTTGG+GGG + Chr8:53170188-53170207 None:intergenic 35.0%
! TTGAAGTCTTGATTTTGTGC+AGG - Chr8:53168887-53168906 MsG0880045044.01.T01:intron 35.0%
! TTGTAGGTATTGTACAGAAG+GGG - Chr8:53166878-53166897 MsG0880045044.01.T01:intron 35.0%
! TTGTCTTTATTTCCTCTAGG+AGG - Chr8:53170441-53170460 MsG0880045044.01.T01:intron 35.0%
! TTTTATGCTTTGCTCAACTG+AGG - Chr8:53170586-53170605 MsG0880045044.01.T01:intron 35.0%
! TTTTCATCCATAGGATTCAC+TGG + Chr8:53170635-53170654 None:intergenic 35.0%
!! AGAAGTTCTGAAAAGAACGA+AGG + Chr8:53170733-53170752 None:intergenic 35.0%
!! AGTTTGCCTAGTCTTATGTA+TGG + Chr8:53166754-53166773 None:intergenic 35.0%
!! ATATGGCAAGGTTCTTGTTT+TGG - Chr8:53167942-53167961 MsG0880045044.01.T01:intron 35.0%
!! CACAACTTGGAATTGATTTG+GGG - Chr8:53166365-53166384 MsG0880045044.01.T01:CDS 35.0%
!! CTCTATTTCTAACCCCAAAA+AGG - Chr8:53168035-53168054 MsG0880045044.01.T01:intron 35.0%
!! CTTCTAAAGTCACACATGAT+TGG + Chr8:53169078-53169097 None:intergenic 35.0%
!! TAAGGATTTTGGCAATGCTT+TGG + Chr8:53167632-53167651 None:intergenic 35.0%
!! TATAAATGTCGGTGTCATGT+CGG + Chr8:53165135-53165154 None:intergenic 35.0%
!! TGCATCAAACTTTTGAAGGT+TGG - Chr8:53166549-53166568 MsG0880045044.01.T01:intron 35.0%
!! TTTCTGAAATTAGCCCAATG+TGG - Chr8:53164453-53164472 MsG0880045044.01.T01:CDS 35.0%
!!! AAAGCCATTTTTTCAGTCAG+TGG - Chr8:53169452-53169471 MsG0880045044.01.T01:intron 35.0%
!!! ATTTTTTCAGTCAGTGGCAA+GGG - Chr8:53169458-53169477 MsG0880045044.01.T01:intron 35.0%
!!! CATTTTTTCTTGGTTTACCG+GGG - Chr8:53165820-53165839 MsG0880045044.01.T01:CDS 35.0%
!!! CCATTTTTTCTTGGTTTACC+GGG - Chr8:53165819-53165838 MsG0880045044.01.T01:CDS 35.0%
!!! GATTTTTTACCAGGAGCTAT+AGG + Chr8:53169871-53169890 None:intergenic 35.0%
!!! GCCATTTTTTCTTGGTTTAC+CGG - Chr8:53165818-53165837 MsG0880045044.01.T01:CDS 35.0%
!!! GTTCAGGTTTTAGATTGTAC+TGG - Chr8:53170463-53170482 MsG0880045044.01.T01:intron 35.0%
AAAAACTAACCTGGCCACAT+TGG + Chr8:53164470-53164489 None:intergenic 40.0%
AAAACTAACCTGGCCACATT+GGG + Chr8:53164469-53164488 None:intergenic 40.0%
AAAATCCGCCATGCCAATAA+TGG - Chr8:53169885-53169904 MsG0880045044.01.T01:intron 40.0%
AACTCCACATCTATGAAGCA+CGG + Chr8:53165244-53165263 None:intergenic 40.0%
AACTCTGGTTGTAACTTTGC+AGG - Chr8:53167734-53167753 MsG0880045044.01.T01:intron 40.0%
AAGGCTCTGTCAATTATGCT+TGG - Chr8:53169580-53169599 MsG0880045044.01.T01:intron 40.0%
AATAGCCACCATTATTGGCA+TGG + Chr8:53169896-53169915 None:intergenic 40.0%
AATCAATTGGATGTCCGAGT+CGG - Chr8:53166670-53166689 MsG0880045044.01.T01:intron 40.0%
ACAGAGCTTAAGAACTAGAG+AGG + Chr8:53167335-53167354 None:intergenic 40.0%
ACATCTATGAAGCACGGATA+CGG + Chr8:53165238-53165257 None:intergenic 40.0%
ACTGCATCATAAGTTCCTTC+TGG + Chr8:53169289-53169308 None:intergenic 40.0%
AGAAAGCTGCAGTATGAATC+TGG + Chr8:53170808-53170827 None:intergenic 40.0%
ATAGGTTTAGTTGCTGGGAA+AGG - Chr8:53164947-53164966 MsG0880045044.01.T01:intron 40.0%
ATCTCTTTGTCTCTTCATGG+AGG + Chr8:53164327-53164346 None:intergenic 40.0%
ATGCCTTACAGAACTCAAAC+AGG + Chr8:53170024-53170043 None:intergenic 40.0%
CAAACATCCAGTGAATCCTA+TGG - Chr8:53170625-53170644 MsG0880045044.01.T01:intron 40.0%
CAATAGACGCCAAACCAAAA+GGG + Chr8:53166579-53166598 None:intergenic 40.0%
CACAGATGAGGTTGACATTA+CGG + Chr8:53168618-53168637 None:intergenic 40.0%
CACATCACAGTGTTTAGATC+TGG - Chr8:53166828-53166847 MsG0880045044.01.T01:CDS 40.0%
CCCGGTAAACCAAGAAAAAA+TGG + Chr8:53165822-53165841 None:intergenic 40.0%
CGAATGGAGAAGACAAAAAG+TGG + Chr8:53166225-53166244 None:intergenic 40.0%
CTAATTTCAGAAAACCACCC+AGG + Chr8:53164446-53164465 None:intergenic 40.0%
CTACAGTTCCTACATATCCA+AGG - Chr8:53169604-53169623 MsG0880045044.01.T01:intron 40.0%
CTATGACCAGGGTCTTAAAT+TGG + Chr8:53165848-53165867 None:intergenic 40.0%
CTTCTTATTGAAGACGTGTC+TGG - Chr8:53164570-53164589 MsG0880045044.01.T01:intron 40.0%
GAATCACTGACACGTATACA+CGG + Chr8:53164927-53164946 None:intergenic 40.0%
GAGTTATTCAGCTCACAGAA+AGG - Chr8:53167968-53167987 MsG0880045044.01.T01:intron 40.0%
GATAAGGACCCAAATGGTAA+TGG - Chr8:53164404-53164423 MsG0880045044.01.T01:exon 40.0%
GATGACTGCAAAAGACATCA+TGG + Chr8:53167919-53167938 None:intergenic 40.0%
GGAAATGCAAAAGATGGTTG+AGG + Chr8:53170712-53170731 None:intergenic 40.0%
GGGTTAGAAATAGAGCAAAG+AGG + Chr8:53168030-53168049 None:intergenic 40.0%
GGTCTATGGCAGAAAAATAG+CGG - Chr8:53169827-53169846 MsG0880045044.01.T01:intron 40.0%
GTAGAAGCGATTCAAACGAA+TGG + Chr8:53166241-53166260 None:intergenic 40.0%
GTCAAATAACAGCTACTGTG+GGG + Chr8:53165585-53165604 None:intergenic 40.0%
GTCAGATTACCAGAAAGTCA+TGG - Chr8:53167802-53167821 MsG0880045044.01.T01:intron 40.0%
GTGGATTCATCTGATCCTAT+TGG - Chr8:53169313-53169332 MsG0880045044.01.T01:intron 40.0%
GTGTGTTTGAGCTTATTTGC+TGG - Chr8:53168141-53168160 MsG0880045044.01.T01:intron 40.0%
GTGTTACCAATAGCAAATGG+CGG - Chr8:53169752-53169771 MsG0880045044.01.T01:intron 40.0%
GTGTTTCATCTGTGATTCCT+GGG - Chr8:53164426-53164445 MsG0880045044.01.T01:CDS 40.0%
GTTGTTTACGGTGTTTGTGT+CGG - Chr8:53164655-53164674 MsG0880045044.01.T01:CDS 40.0%
GTTTATCTGCAGTCACTGAA+AGG - Chr8:53167255-53167274 MsG0880045044.01.T01:intron 40.0%
TAAACCCTACTGCAACTTCA+GGG + Chr8:53168929-53168948 None:intergenic 40.0%
TACATGCCAAGCAAACATCA+GGG + Chr8:53165425-53165444 None:intergenic 40.0%
TCAACAATGGATGTTGAAGG+TGG - Chr8:53164377-53164396 MsG0880045044.01.T01:three_prime_UTR 40.0%
TCAATAGACGCCAAACCAAA+AGG + Chr8:53166580-53166599 None:intergenic 40.0%
TGAGAATTCATGAGCGTATC+CGG + Chr8:53167066-53167085 None:intergenic 40.0%
TGCCTTACAGAACTCAAACA+GGG + Chr8:53170023-53170042 None:intergenic 40.0%
TGCTATGAAACAAAGACGTG+CGG - Chr8:53166854-53166873 MsG0880045044.01.T01:CDS 40.0%
TGGGGTTTCTGTTTCAACAA+TGG - Chr8:53164364-53164383 MsG0880045044.01.T01:three_prime_UTR 40.0%
TGTCTCTGAGTGAAGAGATT+TGG - Chr8:53165264-53165283 MsG0880045044.01.T01:intron 40.0%
TTAAACCCTACTGCAACTTC+AGG + Chr8:53168930-53168949 None:intergenic 40.0%
TTACTTGAACCTCATGTACC+TGG + Chr8:53167832-53167851 None:intergenic 40.0%
! AACACGGTGTTAGTGTGTTA+TGG - Chr8:53169806-53169825 MsG0880045044.01.T01:intron 40.0%
! CATGATGACTTTTCCCACAA+TGG - Chr8:53169235-53169254 MsG0880045044.01.T01:intron 40.0%
! CTCAATACCCTTTTGCATGT+TGG - Chr8:53164498-53164517 MsG0880045044.01.T01:intron 40.0%
! CTCGATTGGTCATCTATCAA+CGG - Chr8:53170938-53170957 MsG0880045044.01.T01:CDS 40.0%
! CTTGCCACTGACTGAAAAAA+TGG + Chr8:53169459-53169478 None:intergenic 40.0%
! GCATTGAAATTTTGCTTGGG+GGG + Chr8:53170187-53170206 None:intergenic 40.0%
! GCTATTGGTAACACCTATTG+TGG + Chr8:53169746-53169765 None:intergenic 40.0%
! TGTGGTAGTTTGGCTTACTT+TGG - Chr8:53165791-53165810 MsG0880045044.01.T01:CDS 40.0%
! TGTTTGTGTCGGTGATTCAT+TGG - Chr8:53164666-53164685 MsG0880045044.01.T01:CDS 40.0%
! TTATTTCCTCTAGGAGGTTC+AGG - Chr8:53170447-53170466 MsG0880045044.01.T01:intron 40.0%
! TTCCCTGTTTGAGTTCTGTA+AGG - Chr8:53170018-53170037 MsG0880045044.01.T01:intron 40.0%
! TTTTCCCTGAAGTTGCAGTA+GGG - Chr8:53168922-53168941 MsG0880045044.01.T01:intron 40.0%
! TTTTTCCCTGAAGTTGCAGT+AGG - Chr8:53168921-53168940 MsG0880045044.01.T01:intron 40.0%
!! AAAGGGAAAAGGGTGTTGTA+TGG + Chr8:53164167-53164186 None:intergenic 40.0%
!! AAGGGAAAAGGGTGTTGTAT+GGG + Chr8:53164166-53164185 None:intergenic 40.0%
!! CAATAGCAAATGGCGGATTA+CGG - Chr8:53169759-53169778 MsG0880045044.01.T01:intron 40.0%
!! GGAAAGGAATCTGCTTTTGA+TGG + Chr8:53164128-53164147 None:intergenic 40.0%
!!! CATTTTTTCAGTCAGTGGCA+AGG - Chr8:53169457-53169476 MsG0880045044.01.T01:intron 40.0%
!!! GTCAGACCCGTTTTAGAAAA+GGG + Chr8:53169941-53169960 None:intergenic 40.0%
!!! TAGGTTTTGGTTATTGGTGG+AGG - Chr8:53168418-53168437 MsG0880045044.01.T01:intron 40.0%
AACAAAGACGTGCGGTTTGT+AGG - Chr8:53166862-53166881 MsG0880045044.01.T01:intron 45.0%
ACAATGGATGTTGAAGGTGG+TGG - Chr8:53164380-53164399 MsG0880045044.01.T01:three_prime_UTR 45.0%
ACATCGGCACTATATCCTAG+AGG + Chr8:53165660-53165679 None:intergenic 45.0%
AGAATCAGAGTGCAAAACGG+TGG + Chr8:53165353-53165372 None:intergenic 45.0%
AGATCGAAGACAATGGTCCT+AGG + Chr8:53167487-53167506 None:intergenic 45.0%
AGGGTCTTAAATTGGTACCC+CGG + Chr8:53165840-53165859 None:intergenic 45.0%
AGGTAAGAGGGAGAATTGAG+TGG - Chr8:53166933-53166952 MsG0880045044.01.T01:intron 45.0%
ATAGGGTTGCTGAGTGATAG+TGG - Chr8:53166906-53166925 MsG0880045044.01.T01:intron 45.0%
ATATCCTTAAGGTCCTGCTC+AGG - Chr8:53169419-53169438 MsG0880045044.01.T01:intron 45.0%
ATCAATTGGATGTCCGAGTC+GGG - Chr8:53166671-53166690 MsG0880045044.01.T01:intron 45.0%
ATCGCTTCTACCTTTCTCCA+TGG - Chr8:53166250-53166269 MsG0880045044.01.T01:intron 45.0%
ATGCAACTCCTAGACCATTG+TGG + Chr8:53169252-53169271 None:intergenic 45.0%
ATTGTGATTCTGGTCGCGTT+AGG + Chr8:53168666-53168685 None:intergenic 45.0%
CAACGGACCATGGAATAAGT+CGG - Chr8:53170955-53170974 MsG0880045044.01.T01:CDS 45.0%
CAGCAACAGGTTTCACAACT+TGG - Chr8:53166352-53166371 MsG0880045044.01.T01:CDS 45.0%
CATGTTCCCTGATGTTTGCT+TGG - Chr8:53165416-53165435 MsG0880045044.01.T01:intron 45.0%
CTAAAACCTGAACCTCCTAG+AGG + Chr8:53170456-53170475 None:intergenic 45.0%
GAAGACAATGGTCCTAGGAT+TGG + Chr8:53167482-53167501 None:intergenic 45.0%
GCAGTCATCAACATATGGCA+AGG - Chr8:53167930-53167949 MsG0880045044.01.T01:intron 45.0%
GGTGTTTCATCTGTGATTCC+TGG - Chr8:53164425-53164444 MsG0880045044.01.T01:CDS 45.0%
GTACAGAAGGGGATGCAATA+GGG - Chr8:53166889-53166908 MsG0880045044.01.T01:intron 45.0%
GTACATGCCAAGCAAACATC+AGG + Chr8:53165426-53165445 None:intergenic 45.0%
GTATCCGTGCTTCATAGATG+TGG - Chr8:53165237-53165256 MsG0880045044.01.T01:intron 45.0%
GTGAGACTAGTGGAATGGAA+AGG + Chr8:53164144-53164163 None:intergenic 45.0%
TAAGAGGGAGAATTGAGTGG+AGG - Chr8:53166936-53166955 MsG0880045044.01.T01:intron 45.0%
TATGGGTGAGACTAGTGGAA+TGG + Chr8:53164149-53164168 None:intergenic 45.0%
TGAGCTCAAAGTAGCTCATG+TGG - Chr8:53170886-53170905 MsG0880045044.01.T01:CDS 45.0%
TGCAACTCCTAGACCATTGT+GGG + Chr8:53169251-53169270 None:intergenic 45.0%
TGTACAGAAGGGGATGCAAT+AGG - Chr8:53166888-53166907 MsG0880045044.01.T01:intron 45.0%
TGTGGTCACAACTATGGTTG+CGG - Chr8:53168592-53168611 MsG0880045044.01.T01:intron 45.0%
TGTTGTATGGGTGAGACTAG+TGG + Chr8:53164154-53164173 None:intergenic 45.0%
TTGGTTATTGGTGGAGGTGA+TGG - Chr8:53168424-53168443 MsG0880045044.01.T01:intron 45.0%
TTGTCAATTGCGAATCGCAG+AGG - Chr8:53170216-53170235 MsG0880045044.01.T01:intron 45.0%
TTTCATCTGTGATTCCTGGG+TGG - Chr8:53164429-53164448 MsG0880045044.01.T01:CDS 45.0%
! GACTTTTCCCACAATGGTCT+AGG - Chr8:53169241-53169260 MsG0880045044.01.T01:intron 45.0%
! GCACTCAGGCTGAAAGTATA+TGG - Chr8:53169505-53169524 MsG0880045044.01.T01:intron 45.0%
! GGTGATTCATTGGCTGGAAA+AGG - Chr8:53164676-53164695 MsG0880045044.01.T01:CDS 45.0%
! TGTTGAAGGTGGTGGTGATA+AGG - Chr8:53164388-53164407 MsG0880045044.01.T01:three_prime_UTR 45.0%
! TTTTCGAAAAGCTCCTGAGC+AGG + Chr8:53169435-53169454 None:intergenic 45.0%
!! AAGTGGAAACGATTTGGTGG+AGG + Chr8:53166208-53166227 None:intergenic 45.0%
!! AGTGGAAACGATTTGGTGGA+GGG + Chr8:53166207-53166226 None:intergenic 45.0%
!! CGTAATCCGCCATTTGCTAT+TGG + Chr8:53169761-53169780 None:intergenic 45.0%
!! GATAGTGGAAGGAGGTAAGA+GGG - Chr8:53166921-53166940 MsG0880045044.01.T01:intron 45.0%
!! TGATAGTGGAAGGAGGTAAG+AGG - Chr8:53166920-53166939 MsG0880045044.01.T01:intron 45.0%
!! TTAGGCACCGACTTATTCCA+TGG + Chr8:53170965-53170984 None:intergenic 45.0%
!! TTTTTGAAGGCAGCTCCAGA+AGG - Chr8:53169271-53169290 MsG0880045044.01.T01:intron 45.0%
!!! GGCAAGGTTCTTGTTTTGGA+TGG - Chr8:53167946-53167965 MsG0880045044.01.T01:intron 45.0%
!!! GGTCAGACCCGTTTTAGAAA+AGG + Chr8:53169942-53169961 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTGTAT+TGG + Chr8:53167608-53167627 None:intergenic 5.0%
AGACGCCAAACCAAAAGGGT+TGG + Chr8:53166575-53166594 None:intergenic 50.0%
AGCCACCATTATTGGCATGG+CGG + Chr8:53169893-53169912 None:intergenic 50.0%
AGGAGGAGTTATGTGCACTC+AGG - Chr8:53169491-53169510 MsG0880045044.01.T01:intron 50.0%
ATCCGCCATGCCAATAATGG+TGG - Chr8:53169888-53169907 MsG0880045044.01.T01:intron 50.0%
ATCTTCCTCCTCGCAAACGA+CGG + Chr8:53170836-53170855 None:intergenic 50.0%
ATGAAGCACGGATACGGACA+CGG + Chr8:53165232-53165251 None:intergenic 50.0%
CAGTGACTGCAGATAAACGC+TGG + Chr8:53167253-53167272 None:intergenic 50.0%
CATGGTCTTCCAGGTACATG+AGG - Chr8:53167820-53167839 MsG0880045044.01.T01:intron 50.0%
CATGTCATATAGGCCCGACT+CGG + Chr8:53166687-53166706 None:intergenic 50.0%
CCAGAAAGTCATGGTCTTCC+AGG - Chr8:53167811-53167830 MsG0880045044.01.T01:intron 50.0%
CCTAAGCCAATAAGTGTCCG+TGG + Chr8:53165072-53165091 None:intergenic 50.0%
CCTGGAAGACCATGACTTTC+TGG + Chr8:53167814-53167833 None:intergenic 50.0%
GAAATTAGCCCAATGTGGCC+AGG - Chr8:53164458-53164477 MsG0880045044.01.T01:CDS 50.0%
GGTCATCTATCAACGGACCA+TGG - Chr8:53170945-53170964 MsG0880045044.01.T01:CDS 50.0%
GGTGGTGATAAGGACCCAAA+TGG - Chr8:53164398-53164417 MsG0880045044.01.T01:three_prime_UTR 50.0%
TATACAGCTCCCGCCATATC+AGG + Chr8:53169975-53169994 None:intergenic 50.0%
TCGTTTGCGAGGAGGAAGAT+TGG - Chr8:53170836-53170855 MsG0880045044.01.T01:CDS 50.0%
TGAGTGCACATAACTCCTCC+TGG + Chr8:53169492-53169511 None:intergenic 50.0%
TGCTGGCATAAACACTTGCG+AGG - Chr8:53168158-53168177 MsG0880045044.01.T01:intron 50.0%
TTGCGAATCGCAGAGGATAG+TGG - Chr8:53170223-53170242 MsG0880045044.01.T01:intron 50.0%
! GGGGTACCAATTTAAGACCC+TGG - Chr8:53165839-53165858 MsG0880045044.01.T01:CDS 50.0%
! GTGACTCTTCGCATTGGTGA+TGG - Chr8:53168960-53168979 MsG0880045044.01.T01:intron 50.0%
! GTTATTGGTGGAGGTGATGG+TGG - Chr8:53168427-53168446 MsG0880045044.01.T01:intron 50.0%
! TGCAGAGAGTATGGTGGAAC+TGG - Chr8:53164298-53164317 MsG0880045044.01.T01:three_prime_UTR 50.0%
! TGTGTCGGTGATTCATTGGC+TGG - Chr8:53164670-53164689 MsG0880045044.01.T01:CDS 50.0%
!! AATGACGTGCTACTTCTCGC+AGG + Chr8:53168456-53168475 None:intergenic 50.0%
!! AGGCTCTGTTTGGCTTTGAC+TGG + Chr8:53164229-53164248 None:intergenic 50.0%
!! CCACGGACACTTATTGGCTT+AGG - Chr8:53165069-53165088 MsG0880045044.01.T01:intron 50.0%
!! GGTTGCTGAGTGATAGTGGA+AGG - Chr8:53166910-53166929 MsG0880045044.01.T01:intron 50.0%
!! GTGGAAACGATTTGGTGGAG+GGG + Chr8:53166206-53166225 None:intergenic 50.0%
!! GTTGGCCAACCCTTTTGGTT+TGG - Chr8:53166567-53166586 MsG0880045044.01.T01:intron 50.0%
!! TGAAGGTTGGCCAACCCTTT+TGG - Chr8:53166562-53166581 MsG0880045044.01.T01:intron 50.0%
!! TGCTGAGTGATAGTGGAAGG+AGG - Chr8:53166913-53166932 MsG0880045044.01.T01:intron 50.0%
!! TTATTGGCTTAGGCGTGTCC+CGG - Chr8:53165079-53165098 MsG0880045044.01.T01:intron 50.0%
!!! GGCATGGCGGATTTTTTACC+AGG + Chr8:53169880-53169899 None:intergenic 50.0%
ACCCTCCGAGGATCCTGATA+TGG - Chr8:53169959-53169978 MsG0880045044.01.T01:intron 55.0%
AGCTCCTGAGCAGGACCTTA+AGG + Chr8:53169426-53169445 None:intergenic 55.0%
CATGGCTGCTGCAGAGAGTA+TGG - Chr8:53164289-53164308 MsG0880045044.01.T01:three_prime_UTR 55.0%
CCAATGCGAAGAGTCACACG+TGG + Chr8:53168957-53168976 None:intergenic 55.0%
CCACGTGTGACTCTTCGCAT+TGG - Chr8:53168954-53168973 MsG0880045044.01.T01:intron 55.0%
CTCCGAGGATCCTGATATGG+CGG - Chr8:53169962-53169981 MsG0880045044.01.T01:intron 55.0%
GCCATATCAGGATCCTCGGA+GGG + Chr8:53169963-53169982 None:intergenic 55.0%
GGTTTGCGACCTATAGCTCC+TGG - Chr8:53169859-53169878 MsG0880045044.01.T01:intron 55.0%
TAACAGCTACTGTGGGGCTG+TGG + Chr8:53165579-53165598 None:intergenic 55.0%
TCCCGCCATATCAGGATCCT+CGG + Chr8:53169967-53169986 None:intergenic 55.0%
TCCGAGGATCCTGATATGGC+GGG - Chr8:53169963-53169982 MsG0880045044.01.T01:intron 55.0%
TCTGTTTGCCGTCGTTTGCG+AGG - Chr8:53170825-53170844 MsG0880045044.01.T01:CDS 55.0%
AAAACGGGTCTGACCCTCCG+AGG - Chr8:53169947-53169966 MsG0880045044.01.T01:intron 60.0%
CGCCATATCAGGATCCTCGG+AGG + Chr8:53169964-53169983 None:intergenic 60.0%
GTCTGTGTGCGTGTCGTGTC+TGG - Chr8:53165203-53165222 MsG0880045044.01.T01:intron 60.0%
GTTTGCCGTCGTTTGCGAGG+AGG - Chr8:53170828-53170847 MsG0880045044.01.T01:CDS 60.0%
TCACGACACGTGTCCGACAC+CGG + Chr8:53165101-53165120 None:intergenic 60.0%
! GGCTGCTGCAGAGAGTATGG+TGG - Chr8:53164292-53164311 MsG0880045044.01.T01:three_prime_UTR 60.0%
CACGACACGTGTCCGACACC+GGG + Chr8:53165100-53165119 None:intergenic 65.0%
GCAAGGGCTCTTCGTCCAGG+AGG - Chr8:53169474-53169493 MsG0880045044.01.T01:intron 65.0%
GCTTAGGCGTGTCCCGGTGT+CGG - Chr8:53165085-53165104 MsG0880045044.01.T01:intron 65.0%
GTGGCAAGGGCTCTTCGTCC+AGG - Chr8:53169471-53169490 MsG0880045044.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 53164115 53171180 53164115 ID=MsG0880045044.01;Name=MsG0880045044.01
Chr8 mRNA 53164115 53171180 53164115 ID=MsG0880045044.01.T01;Parent=MsG0880045044.01;Name=MsG0880045044.01.T01;_AED=0.44;_eAED=0.44;_QI=175|0.85|1|1|1|1|8|306|301
Chr8 exon 53164115 53164486 53164115 ID=MsG0880045044.01.T01:exon:22874;Parent=MsG0880045044.01.T01
Chr8 exon 53164595 53164721 53164595 ID=MsG0880045044.01.T01:exon:22873;Parent=MsG0880045044.01.T01
Chr8 exon 53165670 53165865 53165670 ID=MsG0880045044.01.T01:exon:22872;Parent=MsG0880045044.01.T01
Chr8 exon 53165961 53166032 53165961 ID=MsG0880045044.01.T01:exon:22871;Parent=MsG0880045044.01.T01
Chr8 exon 53166314 53166386 53166314 ID=MsG0880045044.01.T01:exon:22870;Parent=MsG0880045044.01.T01
Chr8 exon 53166770 53166874 53166770 ID=MsG0880045044.01.T01:exon:22869;Parent=MsG0880045044.01.T01
Chr8 exon 53167463 53167539 53167463 ID=MsG0880045044.01.T01:exon:22868;Parent=MsG0880045044.01.T01
Chr8 exon 53170816 53171180 53170816 ID=MsG0880045044.01.T01:exon:22867;Parent=MsG0880045044.01.T01
Chr8 five_prime_UTR 53171006 53171180 53171006 ID=MsG0880045044.01.T01:five_prime_utr;Parent=MsG0880045044.01.T01
Chr8 CDS 53170816 53171005 53170816 ID=MsG0880045044.01.T01:cds;Parent=MsG0880045044.01.T01
Chr8 CDS 53167463 53167539 53167463 ID=MsG0880045044.01.T01:cds;Parent=MsG0880045044.01.T01
Chr8 CDS 53166770 53166874 53166770 ID=MsG0880045044.01.T01:cds;Parent=MsG0880045044.01.T01
Chr8 CDS 53166314 53166386 53166314 ID=MsG0880045044.01.T01:cds;Parent=MsG0880045044.01.T01
Chr8 CDS 53165961 53166032 53165961 ID=MsG0880045044.01.T01:cds;Parent=MsG0880045044.01.T01
Chr8 CDS 53165670 53165865 53165670 ID=MsG0880045044.01.T01:cds;Parent=MsG0880045044.01.T01
Chr8 CDS 53164595 53164721 53164595 ID=MsG0880045044.01.T01:cds;Parent=MsG0880045044.01.T01
Chr8 CDS 53164421 53164486 53164421 ID=MsG0880045044.01.T01:cds;Parent=MsG0880045044.01.T01
Chr8 three_prime_UTR 53164115 53164420 53164115 ID=MsG0880045044.01.T01:three_prime_utr;Parent=MsG0880045044.01.T01
Gene Sequence

>MsG0880045044.01.T01

ATGGCTGCTGCAGAGAGTATGGTGGAACTGGAATCCTCCATGAAGAGACAAAGAGATGATGAAGAAGAGAATAATGGGGTTTCTGTTTCAACAATGGATGTTGAAGGTGGTGGTGATAAGGACCCAAATGGTAATGGTGTTTCATCTGTGATTCCTGGGTGGTTTTCTGAAATTAGCCCAATGTGGCCAGGAGAAGCTCACTCCTTGAAGATAGAAAAGATTTTGTTTCAAGGAAAGTCAGATTACCAGAAAGTCATGGTCTTCCAGGTTTTGGTTATTGGTGGAGGTGATGGTGGAGTCCTGCGAGAAGTAGCACGTCATTCTTCAATTGAAAAGATAGACATTTGTGAAATTGACAATATGGTTGTTGAAGTTTCCAAACAATTTTTCCCTGAAGTTGCAGTAGGGTTTAACGATCCACGTGTGACTCTTCGCATTGGTGATGGAGTTGCATTTTTGAAGGCAGCTCCAGAAGGAACTTATGATGCAGTTATAGTGGATTCATCTGATCCTATTGGTCCTGCTCAGGAGCTTTTCGAAAAGCCATTTTTTCAGTCAGTGGCAAGGGCTCTTCGTCCAGGAGGAGTTATGTGCACTCAGGCTGAAAGTATATGGCTTCATATGGATATAATTGAGGACATTGTGTCCAATTGTCGTCAGATTTTCAAAGGCTCTGTCAATTATGCTTGGACTACAGTTCCTACATATCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGACCTCTTGTTGATTTCAAACATCCAGTGAATCCTATGGATGAAAACGAATGTCAGAAGTCAGTAAGACCACTCAAATTTTACAACTCTGAGATTCATACTGCAGCTTTCTGTTTGCCGTCGTTTGCGAGGAGGAAGATTGGTTCCAAAGAAAACTGA

Protein sequence

>MsG0880045044.01.T01

MAAAESMVELESSMKRQRDDEEENNGVSVSTMDVEGGGDKDPNGNGVSSVIPGWFSEISPMWPGEAHSLKIEKILFQGKSDYQKVMVFQVLVIGGGDGGVLREVARHSSIEKIDICEIDNMVVEVSKQFFPEVAVGFNDPRVTLRIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVARALRPGGVMCTQAESIWLHMDIIEDIVSNCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPLVDFKHPVNPMDENECQKSVRPLKFYNSEIHTAAFCLPSFARRKIGSKEN*