AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016762.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016762.01.T01 MTR_3g095010 89.081 577 5 2 1 543 148 700 0.0 1022
MsG0380016762.01.T01 MTR_3g095010 28.198 344 191 7 225 515 58 398 3.69e-24 107
MsG0380016762.01.T01 MTR_2g095440 27.642 492 283 8 21 475 65 520 6.09e-48 175
MsG0380016762.01.T01 MTR_2g095440 26.230 244 149 3 278 493 12 252 3.44e-19 91.3
MsG0380016762.01.T01 MTR_4g057795 27.439 492 284 8 21 475 9 464 6.37e-48 173
MsG0380016762.01.T01 MTR_4g057795 27.586 145 102 1 349 493 55 196 4.16e-14 75.1
MsG0380016762.01.T01 MTR_2g095440 27.642 492 283 8 21 475 59 514 7.38e-48 174
MsG0380016762.01.T01 MTR_2g095440 26.016 246 151 3 276 493 4 246 3.43e-19 91.3
MsG0380016762.01.T01 MTR_2g095440 27.642 492 283 8 21 475 119 574 1.55e-47 174
MsG0380016762.01.T01 MTR_2g095440 26.016 246 151 3 276 493 64 306 2.14e-19 92.0
MsG0380016762.01.T01 MTR_3g080970 28.472 432 246 8 84 479 302 706 2.26e-47 176
MsG0380016762.01.T01 MTR_4g057795 27.642 492 283 9 21 475 119 574 7.32e-47 172
MsG0380016762.01.T01 MTR_4g057795 26.316 247 149 4 276 493 64 306 1.58e-19 92.4
MsG0380016762.01.T01 MTR_8g075040 27.339 545 300 15 16 499 257 766 1.12e-43 166
MsG0380016762.01.T01 MTR_8g075040 26.736 288 169 7 276 524 207 491 2.65e-22 101
MsG0380016762.01.T01 MTR_7g018380 26.874 547 302 15 16 499 204 715 9.90e-43 162
MsG0380016762.01.T01 MTR_7g018380 26.389 288 170 6 276 524 154 438 1.80e-22 102
MsG0380016762.01.T01 MTR_1g066620 27.813 471 254 11 84 499 122 561 5.17e-42 159
MsG0380016762.01.T01 MTR_1g066620 28.966 290 162 9 288 535 12 299 2.82e-22 100
MsG0380016762.01.T01 MTR_3g096300 31.383 188 87 6 265 426 21 192 6.05e-16 78.6
MsG0380016762.01.T01 MTR_8g442660 31.383 188 87 6 265 426 21 192 6.05e-16 78.6
MsG0380016762.01.T01 MTR_4g081190 28.063 253 147 9 248 477 971 1211 2.44e-15 80.1
MsG0380016762.01.T01 MTR_1g063170 27.236 246 152 8 273 493 1052 1295 5.58e-15 79.0
MsG0380016762.01.T01 MTR_8g022270 26.383 235 149 7 270 482 592 824 1.38e-14 77.8
MsG0380016762.01.T01 MTR_7g102070 26.016 246 155 8 273 493 1078 1321 2.40e-14 77.0
MsG0380016762.01.T01 MTR_1567s0010 29.353 201 123 6 291 473 241 440 3.16e-14 75.5
MsG0380016762.01.T01 MTR_1g059830 29.231 195 111 7 280 449 384 576 1.22e-12 70.9
MsG0380016762.01.T01 MTR_3g093430 27.477 222 128 9 254 449 345 559 1.52e-12 71.2
MsG0380016762.01.T01 MTR_5g029750 30.811 185 103 7 287 449 370 551 7.43e-12 68.9
MsG0380016762.01.T01 MTR_5g029750 24.280 243 145 7 248 469 979 1203 3.82e-11 66.6
MsG0380016762.01.T01 MTR_3g437870 24.436 266 172 6 295 531 642 907 1.13e-11 68.2
MsG0380016762.01.T01 MTR_1g025560 30.220 182 108 5 287 449 1008 1189 1.21e-11 68.2
MsG0380016762.01.T01 MTR_7g079540 27.826 230 128 6 275 467 85 313 2.35e-11 65.9
MsG0380016762.01.T01 MTR_3g086430 28.079 203 124 6 287 469 1015 1215 5.18e-11 66.2
MsG0380016762.01.T01 MTR_7g079540 28.251 223 122 6 275 460 85 306 5.95e-11 64.3
MsG0380016762.01.T01 MTR_1g114170 30.178 169 103 5 304 462 377 540 6.37e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016762.01.T01 AT5G64840 77.816 577 70 2 1 543 140 692 0.0 862
MsG0380016762.01.T01 AT5G09930 73.137 577 97 2 1 543 126 678 0.0 787
MsG0380016762.01.T01 AT1G64550 28.733 442 253 8 72 479 294 707 8.82e-48 177
MsG0380016762.01.T01 AT1G64550 23.026 304 169 6 269 526 168 452 1.96e-14 76.6
MsG0380016762.01.T01 AT5G60790 26.962 497 290 9 16 475 119 579 1.44e-44 166
MsG0380016762.01.T01 AT5G60790 26.016 246 151 4 276 493 69 311 3.86e-18 88.2
MsG0380016762.01.T01 AT3G54540 26.872 454 251 10 84 481 283 711 1.39e-39 154
MsG0380016762.01.T01 AT3G54540 26.421 299 180 5 276 535 163 460 3.78e-24 107
MsG0380016762.01.T01 AT3G54540 26.872 454 251 10 84 481 283 711 1.39e-39 154
MsG0380016762.01.T01 AT3G54540 26.421 299 180 5 276 535 163 460 3.78e-24 107
MsG0380016762.01.T01 AT1G28010 26.961 204 123 6 290 471 389 588 1.85e-13 73.9
MsG0380016762.01.T01 AT1G28010 26.396 197 121 6 276 449 1006 1201 9.19e-12 68.6
MsG0380016762.01.T01 AT1G27940 26.961 204 123 6 290 471 174 373 2.61e-13 73.6
MsG0380016762.01.T01 AT1G27940 27.320 194 117 6 279 449 793 985 8.93e-13 71.6
MsG0380016762.01.T01 AT1G27940 26.961 204 123 6 290 471 388 587 4.75e-13 72.8
MsG0380016762.01.T01 AT1G27940 27.320 194 117 6 279 449 1007 1199 1.58e-12 71.2
MsG0380016762.01.T01 AT5G52860 25.547 274 177 6 295 542 49 321 7.44e-13 71.6
MsG0380016762.01.T01 AT4G25960 27.391 230 143 7 287 496 415 640 1.21e-12 71.6
MsG0380016762.01.T01 AT4G33460 31.313 198 101 8 276 449 40 226 1.23e-12 68.9
MsG0380016762.01.T01 AT3G28390 25.974 231 147 9 290 500 364 590 6.21e-12 69.3
MsG0380016762.01.T01 AT3G28345 22.968 283 190 10 273 531 356 634 6.56e-12 68.9
MsG0380016762.01.T01 AT1G10680 27.322 183 112 5 287 449 375 556 1.48e-11 67.8
MsG0380016762.01.T01 AT5G46540 23.140 242 146 6 251 471 1000 1222 1.54e-11 67.8
MsG0380016762.01.T01 AT3G28415 27.556 225 137 9 290 493 355 574 1.72e-11 67.8
MsG0380016762.01.T01 AT1G10680 27.322 183 112 5 287 449 375 556 1.87e-11 67.8
MsG0380016762.01.T01 AT3G28415 27.556 225 137 9 290 493 363 582 1.94e-11 67.4

Find 191 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATTTGCAGTATTATT+TGG 0.118260 3:+87567407 MsG0380016762.01.T01:intron
TTGGATTTGGCTTTCAATTT+AGG 0.142201 3:-87567492 None:intergenic
TCTCTGCCTCACACTTCTTC+TGG 0.178581 3:+87562249 MsG0380016762.01.T01:five_prime_UTR
TACTTTACTAAAATTGATTA+TGG 0.188943 3:+87564677 MsG0380016762.01.T01:CDS
ACCATCAACTCTACTTGTTT+TGG 0.234739 3:+87565920 MsG0380016762.01.T01:CDS
ACGAGCTCAGGCTGTGAATT+TGG 0.235081 3:+87563019 MsG0380016762.01.T01:CDS
AATGGAGGTTGCGGGGAAAT+TGG 0.247694 3:+87562911 MsG0380016762.01.T01:CDS
ACGGTTTGAAAGAGGTTAAT+TGG 0.258937 3:+87562676 MsG0380016762.01.T01:five_prime_UTR
GGAGTTGATGGGGAGGCTTT+TGG 0.263336 3:+87562974 MsG0380016762.01.T01:CDS
GGTTAATTGGGAAGTGAAAA+AGG 0.267296 3:+87562689 MsG0380016762.01.T01:five_prime_UTR
CAGAAATTGGAAAGACTTCT+TGG 0.282365 3:+87564373 MsG0380016762.01.T01:intron
GACGATATTAAAGGACTTCT+TGG 0.283294 3:+87564947 MsG0380016762.01.T01:CDS
TACCTTTGACATCTTGGATT+TGG 0.289284 3:-87567505 None:intergenic
GAAGTTTACCTTTGACATCT+TGG 0.293270 3:-87567511 None:intergenic
GTGGGTTTAGTTGGTGTAAA+TGG 0.300569 3:+87562720 MsG0380016762.01.T01:five_prime_UTR
GGTTTGGAGGAACCGGATTC+GGG 0.308979 3:+87562777 MsG0380016762.01.T01:CDS
TCCAAAACAAGTAGAGTTGA+TGG 0.315178 3:-87565921 None:intergenic
ACAGTTAGGAACTTGGATTT+TGG 0.319199 3:+87564481 MsG0380016762.01.T01:CDS
ACCTCAAGCATTTCTTTAGA+AGG 0.324032 3:-87565969 None:intergenic
AGGTTTGGAGGAACCGGATT+CGG 0.327589 3:+87562776 MsG0380016762.01.T01:CDS
AGAAGATTGTGTGGCGGTTA+TGG 0.334542 3:-87562285 None:intergenic
ATTATAGCATTTGTGATTCC+TGG 0.339255 3:+87567888 MsG0380016762.01.T01:three_prime_UTR
TTAGGTGCCGGAGCAAGTTC+TGG 0.354938 3:+87563989 MsG0380016762.01.T01:CDS
AACGGAAACAAATGAAAATC+AGG 0.359605 3:+87564422 MsG0380016762.01.T01:CDS
GATGAGGATTATTGCAGGTT+TGG 0.363247 3:+87562761 MsG0380016762.01.T01:exon
TGTGAATGATTTGGAGTTGA+TGG 0.367327 3:+87562962 MsG0380016762.01.T01:CDS
TTGATGCCTGAGCTTGGTTT+TGG 0.370792 3:+87563068 MsG0380016762.01.T01:CDS
ACTTTACTAAAATTGATTAT+GGG 0.374049 3:+87564678 MsG0380016762.01.T01:CDS
GTGTTAGTGTTGAAGGTGTT+GGG 0.375541 3:-87562427 None:intergenic
ACAGGCTGAGGCACTTGATC+TGG 0.376554 3:+87564874 MsG0380016762.01.T01:intron
TAACTATTTCGAGCAGAATC+AGG 0.379580 3:+87564755 MsG0380016762.01.T01:CDS
GAGTGCTTTCAAAGAGGAAA+TGG 0.382990 3:+87562893 MsG0380016762.01.T01:CDS
TTCATTTGTTTCCGTTCAAA+TGG 0.384165 3:-87564415 None:intergenic
CTCTGCCTCACACTTCTTCT+GGG 0.390476 3:+87562250 MsG0380016762.01.T01:five_prime_UTR
GGGGTTAGTGTTAGTGTTGA+AGG 0.391042 3:-87562434 None:intergenic
TTAATCACATTCCCCGAATC+CGG 0.391790 3:-87562789 None:intergenic
TGAGGGTTCTGTGAATGATT+TGG 0.394197 3:+87562953 MsG0380016762.01.T01:CDS
ATTGCCATTCTTGGTCCAAA+TGG 0.399808 3:+87564642 MsG0380016762.01.T01:CDS
AAAGAGGAAATGGAGGTTGC+GGG 0.405864 3:+87562903 MsG0380016762.01.T01:CDS
AAAATTGTTCTCTTCATGTA+TGG 0.407853 3:-87567736 None:intergenic
GTACTCTTGCCACATCCATT+TGG 0.408591 3:-87564657 None:intergenic
TGGAGGAGTGACGATATTAA+AGG 0.411374 3:+87564938 MsG0380016762.01.T01:CDS
AGTGTTGAAGGTGTTGGGTT+TGG 0.414116 3:-87562422 None:intergenic
GGTGAGAAAGTGGGTTTAGT+TGG 0.417873 3:+87562711 MsG0380016762.01.T01:five_prime_UTR
TCATCTAACAACAACAAATC+TGG 0.426653 3:-87563696 None:intergenic
CTCCGGTGAGGTCGAGGTGG+TGG 0.428069 3:-87562342 None:intergenic
TAGAGGAAGCTGCCGAGGAC+TGG 0.429062 3:+87564918 MsG0380016762.01.T01:CDS
AGTGTTAGTGTTGAAGGTGT+TGG 0.429428 3:-87562428 None:intergenic
GGCAAATCTTACAATTGAAA+GGG 0.431561 3:+87564611 MsG0380016762.01.T01:CDS
TATTGCAGGTTTGGAGGAAC+CGG 0.432241 3:+87562770 MsG0380016762.01.T01:CDS
CGGTTTGAAAGAGGTTAATT+GGG 0.439084 3:+87562677 MsG0380016762.01.T01:five_prime_UTR
TTTGAAGTGAAGAATCGATT+GGG 0.440366 3:-87562454 None:intergenic
AGGATAACTTCACCGCTGAT+TGG 0.444666 3:-87564711 None:intergenic
AGATTGGACGTGTCTTCAAT+TGG 0.444820 3:+87563347 MsG0380016762.01.T01:CDS
AGAGAGTTGATAAGCAGGTT+AGG 0.447090 3:+87563971 MsG0380016762.01.T01:CDS
ACGCAGATGAGGATTATTGC+AGG 0.447820 3:+87562756 MsG0380016762.01.T01:exon
TGATTCTGCTCGAAATAGTT+AGG 0.448814 3:-87564753 None:intergenic
CGATGAGATGAGTGTGGGAT+AGG 0.448984 3:-87562399 None:intergenic
TCAAGATCAAGGTGATTTGT+AGG 0.461063 3:-87563720 None:intergenic
GTCGAGGTGGTGGAGCTTTG+AGG 0.461557 3:-87562332 None:intergenic
CGTTTCGTCTGGTGTGAAGT+TGG 0.462519 3:+87562624 MsG0380016762.01.T01:five_prime_UTR
TCTCTTCATGTATGGTGTAA+TGG 0.464376 3:-87567728 None:intergenic
TCAGCGGTGAAGTTATCCTT+GGG 0.465273 3:+87564715 MsG0380016762.01.T01:CDS
TGGAGAAGAATCTTGATGCC+AGG 0.465875 3:+87567427 MsG0380016762.01.T01:CDS
TGTTGTAACAGTTAGGAACT+TGG 0.467480 3:+87564474 MsG0380016762.01.T01:CDS
AGTTTCGTCCACGGCGGCTA+CGG 0.469289 3:-87562506 None:intergenic
ATCAGCGGTGAAGTTATCCT+TGG 0.477715 3:+87564714 MsG0380016762.01.T01:CDS
TTAGTTGGTGTAAATGGTGC+GGG 0.479604 3:+87562726 MsG0380016762.01.T01:five_prime_UTR
CTTTGTCGTCAAGCTCAGCC+TGG 0.480481 3:-87567467 None:intergenic
ACATCCATTTGGACCAAGAA+TGG 0.482881 3:-87564646 None:intergenic
GGAGCTTCAAGCGTTTCGTC+TGG 0.483696 3:+87562613 MsG0380016762.01.T01:five_prime_UTR
AGACGAAACGCTTGAAGCTC+CGG 0.485415 3:-87562611 None:intergenic
GAGGATTATTGCAGGTTTGG+AGG 0.486864 3:+87562764 MsG0380016762.01.T01:CDS
TTTGCTTCAGAGACGAGCTC+AGG 0.488113 3:+87563007 MsG0380016762.01.T01:CDS
ACGATATTAAAGGACTTCTT+GGG 0.489351 3:+87564948 MsG0380016762.01.T01:CDS
GTCGAGTCTGTATTGGAGAT+TGG 0.490869 3:+87563331 MsG0380016762.01.T01:CDS
AGTTAAAGATGGCACTGTGC+AGG 0.495959 3:+87566214 MsG0380016762.01.T01:CDS
AGGCAAATCTTACAATTGAA+AGG 0.498825 3:+87564610 MsG0380016762.01.T01:CDS
ATTCCAGTATATTCTTTCAA+AGG 0.499442 3:+87563886 MsG0380016762.01.T01:intron
GAAGATCTGTTGTAACAGTT+AGG 0.500389 3:+87564467 MsG0380016762.01.T01:CDS
ATATTCTTTCAAAGGCGACT+TGG 0.503007 3:+87563894 MsG0380016762.01.T01:CDS
TTGTATATATCATGTCTCAA+TGG 0.506183 3:+87567822 MsG0380016762.01.T01:three_prime_UTR
CCGTGCTTCGACTGCTGAGA+AGG 0.506367 3:+87564012 MsG0380016762.01.T01:CDS
TGAGGCCAACTCCATTGTGT+TGG 0.508062 3:-87562314 None:intergenic
GGATGAACCAACGAATCACT+TGG 0.511588 3:+87565941 MsG0380016762.01.T01:CDS
GGTATATCCAAGTGATTCGT+TGG 0.512337 3:-87565948 None:intergenic
CTTCCACTGCTTCCACGCAC+AGG 0.512959 3:-87564448 None:intergenic
GTGAATGATTTGGAGTTGAT+GGG 0.513667 3:+87562963 MsG0380016762.01.T01:CDS
TGAAGATTATCTTAACAAGC+AGG 0.517743 3:+87563758 MsG0380016762.01.T01:CDS
ACTCAATTGTGTCAAGATCA+AGG 0.517929 3:-87563731 None:intergenic
GTGCAAAGAATTCAAAGAGA+TGG 0.519064 3:+87567689 MsG0380016762.01.T01:CDS
GGCACTGTGCAGGATTATGC+TGG 0.519823 3:+87566224 MsG0380016762.01.T01:CDS
TGTCAGTGTCGAGTCTGTAT+TGG 0.521180 3:+87563324 MsG0380016762.01.T01:intron
ATCGTCACTCCTCCAGTCCT+CGG 0.521542 3:-87564930 None:intergenic
CAAAGAGGAAATGGAGGTTG+CGG 0.522263 3:+87562902 MsG0380016762.01.T01:CDS
TGAATGCTCCGGTGAGGTCG+AGG 0.525529 3:-87562348 None:intergenic
TTAGATTTATTCACCCAATG+AGG 0.528320 3:+87567757 MsG0380016762.01.T01:three_prime_UTR
CAAGCAAAACAGAAGTCTAA+AGG 0.530649 3:+87567667 MsG0380016762.01.T01:CDS
TTCCCTGTGCGTGGAAGCAG+TGG 0.531912 3:+87564445 MsG0380016762.01.T01:CDS
TCGTTCATCGACTGAAGTAT+CGG 0.532089 3:-87562563 None:intergenic
AGTAAGTTGATGCCTGAGCT+TGG 0.532687 3:+87563062 MsG0380016762.01.T01:CDS
TGTAGAGGATTCCGATAGGT+TGG 0.537166 3:+87563091 MsG0380016762.01.T01:CDS
AGCACGGCCAGAACTTGCTC+CGG 0.538120 3:-87563996 None:intergenic
AATTTGAGGTTTCGCCGAGT+AGG 0.539440 3:+87562850 MsG0380016762.01.T01:CDS
GACGTGTCTTCAATTGGAAG+TGG 0.539759 3:+87563353 MsG0380016762.01.T01:CDS
AAAGTGCAGAAGGCGCTTGA+GGG 0.540064 3:+87562936 MsG0380016762.01.T01:CDS
AAGGTGTCACGGTTTGAAAG+AGG 0.540924 3:+87562668 MsG0380016762.01.T01:five_prime_UTR
TGAGACATGATATATACAAA+AGG 0.541276 3:-87567818 None:intergenic
ATCATCCAACACAATGGAGT+TGG 0.547922 3:+87562309 MsG0380016762.01.T01:five_prime_UTR
ATCATGAGATACGGTGATAA+CGG 0.548364 3:-87566153 None:intergenic
CTCCACCACCTCGACCTCAC+CGG 0.548859 3:+87562340 MsG0380016762.01.T01:five_prime_UTR
GACAGTAGAGGAAGCTGCCG+AGG 0.548939 3:+87564913 MsG0380016762.01.T01:CDS
TCTATTGAGTGGTGGTGAGA+AGG 0.550123 3:+87565012 MsG0380016762.01.T01:CDS
GAAAGTGCAGAAGGCGCTTG+AGG 0.550395 3:+87562935 MsG0380016762.01.T01:CDS
TAGATTTATTCACCCAATGA+GGG 0.551076 3:+87567758 MsG0380016762.01.T01:three_prime_UTR
AGGAAGCTGCCGAGGACTGG+AGG 0.551231 3:+87564921 MsG0380016762.01.T01:CDS
TGTGGGATAGGGTGCGTGGA+AGG 0.551650 3:-87562387 None:intergenic
TTGATAAGCAGGTTAGGTGC+CGG 0.551653 3:+87563977 MsG0380016762.01.T01:CDS
AAGGAAGAAGCAAAAGATGC+AGG 0.553204 3:+87567636 MsG0380016762.01.T01:CDS
TGAGGTTTCGCCGAGTAGGA+CGG 0.553445 3:+87562854 MsG0380016762.01.T01:CDS
AGAGTGATTGAAGTTAAAGA+TGG 0.555267 3:+87566203 MsG0380016762.01.T01:CDS
TGAAACACAGTATGCTGCAT+GGG 0.558064 3:+87563919 MsG0380016762.01.T01:CDS
GGAGAAGAATCTTGATGCCA+GGG 0.558623 3:+87567428 MsG0380016762.01.T01:CDS
AAACAAGAGAGTTGATAAGC+AGG 0.561228 3:+87563966 MsG0380016762.01.T01:CDS
TTACAGTCTCAACAACAACT+TGG 0.561617 3:+87567917 MsG0380016762.01.T01:three_prime_UTR
GTTTGGCGATGAGATGAGTG+TGG 0.563673 3:-87562405 None:intergenic
CGGGAAAGACGACGCAGATG+AGG 0.567288 3:+87562745 MsG0380016762.01.T01:exon
AAAAGAAGCAACCAACCTAT+CGG 0.568234 3:-87563102 None:intergenic
GTTTATGAGTGCTTTCAAAG+AGG 0.568928 3:+87562887 MsG0380016762.01.T01:CDS
TCATGTATGGTGTAATGGAA+TGG 0.574779 3:-87567723 None:intergenic
AAAATCAGGTTCCCTGTGCG+TGG 0.579340 3:+87564436 MsG0380016762.01.T01:CDS
TCTACACCAAAACCAAGCTC+AGG 0.581292 3:-87563074 None:intergenic
TTGAAGTGAAGAATCGATTG+GGG 0.582917 3:-87562453 None:intergenic
TTCGTCCACGGCGGCTACGG+CGG 0.583554 3:-87562503 None:intergenic
TGCTTTCAAAGAGGAAATGG+AGG 0.585578 3:+87562896 MsG0380016762.01.T01:CDS
TTGAGACTGTAAACTTCACC+AGG 0.588650 3:-87567906 None:intergenic
TTCCACTGCTTCCACGCACA+GGG 0.589830 3:-87564447 None:intergenic
CGTAAAGTTTCTCTATTGAG+TGG 0.590268 3:+87565001 MsG0380016762.01.T01:CDS
TTGATCTTGACACAATTGAG+TGG 0.591241 3:+87563733 MsG0380016762.01.T01:CDS
AGCTACTGAAGTTTCGTCCA+CGG 0.592252 3:-87562515 None:intergenic
CTTCAATTGGAAGTGGCTAG+TGG 0.592746 3:+87563360 MsG0380016762.01.T01:CDS
GGCACTTGATCTGGAAAAGA+CGG 0.593050 3:+87564883 MsG0380016762.01.T01:CDS
AACAATAAACAATCTAACAC+CGG 0.593481 3:+87562592 MsG0380016762.01.T01:five_prime_UTR
TTTAGTTGGTGTAAATGGTG+CGG 0.595148 3:+87562725 MsG0380016762.01.T01:five_prime_UTR
CCTTCTCAGCAGTCGAAGCA+CGG 0.596601 3:-87564012 None:intergenic
GAAATTGGAGAAAGTGCAGA+AGG 0.599509 3:+87562926 MsG0380016762.01.T01:CDS
TGAATCGAGAATGAATGCTC+CGG 0.603746 3:-87562359 None:intergenic
GATGAGATGAGTGTGGGATA+GGG 0.605531 3:-87562398 None:intergenic
AAAGTACCGATCATGAGATA+CGG 0.606013 3:-87566162 None:intergenic
GATTTATTCACCCAATGAGG+GGG 0.608387 3:+87567760 MsG0380016762.01.T01:three_prime_UTR
TCTTCCCTCACCGTCCTACT+CGG 0.608929 3:-87562864 None:intergenic
AGCCAAATCCAAGATGTCAA+AGG 0.614850 3:+87567503 MsG0380016762.01.T01:CDS
GAAGTGTGAGGCAGAGAACG+AGG 0.618933 3:-87562243 None:intergenic
ATGATTTGGAGTTGATGGGG+AGG 0.619037 3:+87562967 MsG0380016762.01.T01:CDS
TTTATCCGCCGTAGCCGCCG+TGG 0.619187 3:+87562498 MsG0380016762.01.T01:five_prime_UTR
GCAAATCTTACAATTGAAAG+GGG 0.619588 3:+87564612 MsG0380016762.01.T01:CDS
AGATTTATTCACCCAATGAG+GGG 0.625503 3:+87567759 MsG0380016762.01.T01:three_prime_UTR
AAAGTTTCTCTATTGAGTGG+TGG 0.627890 3:+87565004 MsG0380016762.01.T01:CDS
ATCAGGCTGAGAAAGAAGCA+AGG 0.628611 3:+87567617 MsG0380016762.01.T01:intron
ATTCTTGGTCCAAATGGATG+TGG 0.633025 3:+87564648 MsG0380016762.01.T01:CDS
TGAGTGTGGGATAGGGTGCG+TGG 0.633289 3:-87562391 None:intergenic
TAACAAGCAGGATGTGCCGA+TGG 0.633293 3:+87563770 MsG0380016762.01.T01:CDS
ATTGGAAAGACTTCTTGGAG+AGG 0.634177 3:+87564378 MsG0380016762.01.T01:CDS
GCAATACATTATGCTCCCCA+AGG 0.635416 3:-87564731 None:intergenic
GTTTGGAGGAACCGGATTCG+GGG 0.635581 3:+87562778 MsG0380016762.01.T01:CDS
TGGCAGATGAGGATGTGTCT+TGG 0.636187 3:+87563134 MsG0380016762.01.T01:CDS
CAATTGGAAGTGGCTAGTGG+TGG 0.636685 3:+87563363 MsG0380016762.01.T01:CDS
TAGTAGAGAAGCCATTTGAA+CGG 0.638546 3:+87564404 MsG0380016762.01.T01:CDS
TTCGCCGAGTAGGACGGTGA+GGG 0.642046 3:+87562860 MsG0380016762.01.T01:CDS
GACGGTGCTTGAGACAGTAG+AGG 0.647160 3:+87564901 MsG0380016762.01.T01:CDS
TTAGTGGTGGATGGCAGATG+AGG 0.647334 3:+87563123 MsG0380016762.01.T01:CDS
TTTCGCCGAGTAGGACGGTG+AGG 0.648524 3:+87562859 MsG0380016762.01.T01:CDS
TTTGGCGATGAGATGAGTGT+GGG 0.650568 3:-87562404 None:intergenic
TTGGTGTAGAGGATTCCGAT+AGG 0.651148 3:+87563087 MsG0380016762.01.T01:CDS
CTTCTGATCATCCAACACAA+TGG 0.653608 3:+87562303 MsG0380016762.01.T01:five_prime_UTR
TGAATGATTTGGAGTTGATG+GGG 0.654862 3:+87562964 MsG0380016762.01.T01:CDS
TTATCACCGTATCTCATGAT+CGG 0.661904 3:+87566156 MsG0380016762.01.T01:CDS
ACCTTCTAAAGAAATGCTTG+AGG 0.662881 3:+87565968 MsG0380016762.01.T01:CDS
TTGAAACACAGTATGCTGCA+TGG 0.664460 3:+87563918 MsG0380016762.01.T01:CDS
GGAGGCAATAAATGAGTACG+AGG 0.667247 3:+87566127 MsG0380016762.01.T01:intron
AAGAGGAAATGGAGGTTGCG+GGG 0.668229 3:+87562904 MsG0380016762.01.T01:CDS
TGGTGGTATTGCAAATTGCA+TGG 0.677034 3:+87563380 MsG0380016762.01.T01:CDS
CGAGAATGAATGCTCCGGTG+AGG 0.684460 3:-87562354 None:intergenic
CAGCGGTGAAGTTATCCTTG+GGG 0.685607 3:+87564716 MsG0380016762.01.T01:CDS
GGTTTAGAGAAGCCAATCAG+CGG 0.693977 3:+87564699 MsG0380016762.01.T01:CDS
ATGCTCCGGTGAGGTCGAGG+TGG 0.714725 3:-87562345 None:intergenic
TGGATGATCAGAAGATTGTG+TGG 0.717773 3:-87562294 None:intergenic
GAGGCAATAAATGAGTACGA+GGG 0.751118 3:+87566128 MsG0380016762.01.T01:CDS
TACTGAAGTTTCGTCCACGG+CGG 0.754126 3:-87562512 None:intergenic
ATGATCAGAAGATTGTGTGG+CGG 0.771267 3:-87562291 None:intergenic
ACTTCAGTCGATGAACGACG+CGG 0.772804 3:+87562568 MsG0380016762.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAATCAATATTAGT+CGG - Chr3:87566098-87566117 None:intergenic 10.0%
!! GATTTATCATTTAAAAATAA+CGG - Chr3:87563507-87563526 None:intergenic 10.0%
!! TCAAAAAAAAAGAAAATATT+AGG - Chr3:87566052-87566071 None:intergenic 10.0%
!! TTAAATGATAAATCAATAAA+GGG + Chr3:87563513-87563532 MsG0380016762.01.T01:intron 10.0%
!! TTTAAATGATAAATCAATAA+AGG + Chr3:87563512-87563531 MsG0380016762.01.T01:intron 10.0%
!!! AAACATTAATTTTTACAATA+CGG - Chr3:87564296-87564315 None:intergenic 10.0%
!!! TTTTTTTTACTAAAATTAAG+GGG + Chr3:87567018-87567037 MsG0380016762.01.T01:intron 10.0%
!! AAAAAGAATACAAATGATTA+TGG + Chr3:87563451-87563470 MsG0380016762.01.T01:intron 15.0%
!! AAGTATATTTAAACAATCTA+TGG - Chr3:87566306-87566325 None:intergenic 15.0%
!! AATATTAGAAAAACTTACAA+AGG + Chr3:87562649-87562668 MsG0380016762.01.T01:five_prime_UTR 15.0%
!! ACTTTACTAAAATTGATTAT+GGG + Chr3:87564678-87564697 MsG0380016762.01.T01:CDS 15.0%
!! AGTATATTTAAACAATCTAT+GGG - Chr3:87566305-87566324 None:intergenic 15.0%
!! ATATTCATTATATACAAAAC+TGG - Chr3:87567321-87567340 None:intergenic 15.0%
!! ATGATTTATTCCTAATAAAA+AGG + Chr3:87565542-87565561 MsG0380016762.01.T01:intron 15.0%
!! TACTTTACTAAAATTGATTA+TGG + Chr3:87564677-87564696 MsG0380016762.01.T01:CDS 15.0%
!! TATTTAAGTGACTAATATTA+AGG - Chr3:87564213-87564232 None:intergenic 15.0%
!! TGATTTATTCCTAATAAAAA+GGG + Chr3:87565543-87565562 MsG0380016762.01.T01:intron 15.0%
!! TTTAAAGAAATTTAAGAAAC+AGG + Chr3:87565323-87565342 MsG0380016762.01.T01:intron 15.0%
!!! ATTGATTTATTTGAAAAATC+AGG + Chr3:87567600-87567619 MsG0380016762.01.T01:intron 15.0%
!!! TAAATGTATTTGACAATTTT+GGG + Chr3:87565429-87565448 MsG0380016762.01.T01:intron 15.0%
!!! TTCTTAAATTTCTTTAAAGA+CGG - Chr3:87565321-87565340 None:intergenic 15.0%
!!! TTCTTTTAAGTAAATAACAT+AGG - Chr3:87564331-87564350 None:intergenic 15.0%
!! AAATTAAAACAGAATACATC+AGG - Chr3:87566671-87566690 None:intergenic 20.0%
!! AATGATTATGGTTAGTAATT+AGG + Chr3:87563463-87563482 MsG0380016762.01.T01:intron 20.0%
!! ATTGCAATTTACAACTATTT+CGG - Chr3:87564265-87564284 None:intergenic 20.0%
!! CATGTTTGTTTATTGTTATA+GGG + Chr3:87567364-87567383 MsG0380016762.01.T01:intron 20.0%
!! TAAATTATACCCTCAAAATT+AGG - Chr3:87567202-87567221 None:intergenic 20.0%
!! TGAAAATTTGCAGTATTATT+TGG + Chr3:87567407-87567426 MsG0380016762.01.T01:intron 20.0%
!! TGAACATTAAATACAGATAA+AGG - Chr3:87566015-87566034 None:intergenic 20.0%
!! TTGAATCATTCAATGAAAAA+TGG - Chr3:87567261-87567280 None:intergenic 20.0%
!!! AAAAACGCAATTTTCATATT+TGG - Chr3:87562822-87562841 None:intergenic 20.0%
!!! AAAGATTTTCAAAATGTCTA+AGG - Chr3:87565243-87565262 None:intergenic 20.0%
!!! AAAGTTTTGAAATGAAGAAT+TGG - Chr3:87564824-87564843 None:intergenic 20.0%
!!! ATTAATTTTTACAATACGGA+AGG - Chr3:87564292-87564311 None:intergenic 20.0%
!!! CCATATTTTACTTTTTGAAA+GGG - Chr3:87566783-87566802 None:intergenic 20.0%
!!! GTAAATGTATTTGACAATTT+TGG + Chr3:87565428-87565447 MsG0380016762.01.T01:intron 20.0%
!!! TATCATTTAAAAATAACGGA+CGG - Chr3:87563503-87563522 None:intergenic 20.0%
!!! TCCATATTTTACTTTTTGAA+AGG - Chr3:87566784-87566803 None:intergenic 20.0%
!!! TGATGTATTCTGTTTTAATT+TGG + Chr3:87566670-87566689 MsG0380016762.01.T01:intron 20.0%
! AAAAGAAAATATTAGGCTGA+TGG - Chr3:87566045-87566064 None:intergenic 25.0%
! AAAATTGTTCTCTTCATGTA+TGG - Chr3:87567739-87567758 None:intergenic 25.0%
! AAAGAAAATATTAGGCTGAT+GGG - Chr3:87566044-87566063 None:intergenic 25.0%
! AAATAAAGTGAAGAAATCTG+AGG - Chr3:87566625-87566644 None:intergenic 25.0%
! AAATAACTTAGACGATCAAA+AGG + Chr3:87566945-87566964 MsG0380016762.01.T01:intron 25.0%
! AAATCTAGTTGTTGTCTAAA+AGG - Chr3:87563419-87563438 None:intergenic 25.0%
! AACAATAAACAAACATGCAT+TGG - Chr3:87567361-87567380 None:intergenic 25.0%
! AACAATAAACAATCTAACAC+CGG + Chr3:87562592-87562611 MsG0380016762.01.T01:five_prime_UTR 25.0%
! AATAAAGTGAAGAAATCTGA+GGG - Chr3:87566624-87566643 None:intergenic 25.0%
! AATCTAGTTGTTGTCTAAAA+GGG - Chr3:87563418-87563437 None:intergenic 25.0%
! ACTTAAATAACCCAAAAATG+CGG + Chr3:87564224-87564243 MsG0380016762.01.T01:intron 25.0%
! AGGTAAGAAAAAAAATGAGA+CGG - Chr3:87565995-87566014 None:intergenic 25.0%
! AGTATATTGTGTATGTGTAT+AGG + Chr3:87563200-87563219 MsG0380016762.01.T01:intron 25.0%
! ATATAATGCAACACTATTAG+GGG + Chr3:87565840-87565859 MsG0380016762.01.T01:intron 25.0%
! ATGTAAAATTCCTATCACAA+AGG - Chr3:87566698-87566717 None:intergenic 25.0%
! ATTCCAGTATATTCTTTCAA+AGG + Chr3:87563886-87563905 MsG0380016762.01.T01:intron 25.0%
! CATATAATGCAACACTATTA+GGG + Chr3:87565839-87565858 MsG0380016762.01.T01:intron 25.0%
! CATGTAATACTAATGATCAA+TGG - Chr3:87566401-87566420 None:intergenic 25.0%
! CCCTTTCAAAAAGTAAAATA+TGG + Chr3:87566780-87566799 MsG0380016762.01.T01:intron 25.0%
! CTTAAACTTTGTTAGACATA+TGG - Chr3:87564187-87564206 None:intergenic 25.0%
! GCATGTTTGTTTATTGTTAT+AGG + Chr3:87567363-87567382 MsG0380016762.01.T01:intron 25.0%
! TATATGCATTTAGTGAGAAA+GGG - Chr3:87565825-87565844 None:intergenic 25.0%
! TCAACTATGTACAAAAATTG+TGG + Chr3:87563824-87563843 MsG0380016762.01.T01:intron 25.0%
! TCAGATTTCTTCACTTTATT+TGG + Chr3:87566624-87566643 MsG0380016762.01.T01:intron 25.0%
! TGAATGATTCAATAGACATA+TGG + Chr3:87567269-87567288 MsG0380016762.01.T01:intron 25.0%
! TGAGACATGATATATACAAA+AGG - Chr3:87567821-87567840 None:intergenic 25.0%
! TGATTTATAATTCTTCTACC+AGG + Chr3:87566106-87566125 MsG0380016762.01.T01:intron 25.0%
! TTAAGAAAATTGAGGAATGA+GGG - Chr3:87566503-87566522 None:intergenic 25.0%
! TTAAGAAACAGGAACTAAAA+TGG + Chr3:87565334-87565353 MsG0380016762.01.T01:intron 25.0%
! TTATATATCTAGTGCTATGA+TGG + Chr3:87564161-87564180 MsG0380016762.01.T01:intron 25.0%
! TTATATGCATTTAGTGAGAA+AGG - Chr3:87565826-87565845 None:intergenic 25.0%
! TTGTATATATCATGTCTCAA+TGG + Chr3:87567822-87567841 MsG0380016762.01.T01:three_prime_UTR 25.0%
!! AATCTCAATCCTTATGATTT+TGG - Chr3:87564134-87564153 None:intergenic 25.0%
!! ATATTGTTCCATGTTTTACT+AGG + Chr3:87565866-87565885 MsG0380016762.01.T01:intron 25.0%
!! ATCTCAATCCTTATGATTTT+GGG - Chr3:87564133-87564152 None:intergenic 25.0%
!! CAGATTTCTTCACTTTATTT+GGG + Chr3:87566625-87566644 MsG0380016762.01.T01:intron 25.0%
!!! AGCTTATTTCTATGATTGAA+TGG + Chr3:87565119-87565138 MsG0380016762.01.T01:intron 25.0%
!!! AGTCAAAAGTACTCATTAAA+TGG + Chr3:87564091-87564110 MsG0380016762.01.T01:intron 25.0%
!!! ATCATTTAAAAATAACGGAC+GGG - Chr3:87563502-87563521 None:intergenic 25.0%
!!! GTATTACATGTGTTTTTTGT+TGG + Chr3:87566411-87566430 MsG0380016762.01.T01:intron 25.0%
!!! GTCAAAAGTACTCATTAAAT+GGG + Chr3:87564092-87564111 MsG0380016762.01.T01:intron 25.0%
!!! TTTTTTTTCAACAGCATATC+TGG + Chr3:87566733-87566752 MsG0380016762.01.T01:intron 25.0%
AAAAATTGTGGAAACTGACA+TGG + Chr3:87563836-87563855 MsG0380016762.01.T01:intron 30.0%
AAAACAGAATACATCAGGTA+GGG - Chr3:87566666-87566685 None:intergenic 30.0%
AAAATTGTGGAAACTGACAT+GGG + Chr3:87563837-87563856 MsG0380016762.01.T01:intron 30.0%
AAACTATTTACATGCTTCCA+TGG + Chr3:87565750-87565769 MsG0380016762.01.T01:intron 30.0%
AAACTTCTGTGAAACTCATA+TGG + Chr3:87567527-87567546 MsG0380016762.01.T01:intron 30.0%
AACAAACAACCACATTTCAA+AGG - Chr3:87565274-87565293 None:intergenic 30.0%
AACGGAAACAAATGAAAATC+AGG + Chr3:87564422-87564441 MsG0380016762.01.T01:CDS 30.0%
AATCATCATTTGCATCTAGA+TGG - Chr3:87566465-87566484 None:intergenic 30.0%
ACGATATTAAAGGACTTCTT+GGG + Chr3:87564948-87564967 MsG0380016762.01.T01:CDS 30.0%
AGGCAAATCTTACAATTGAA+AGG + Chr3:87564610-87564629 MsG0380016762.01.T01:CDS 30.0%
ATTATAGCATTTGTGATTCC+TGG + Chr3:87567888-87567907 MsG0380016762.01.T01:three_prime_UTR 30.0%
CAGCAATATCATCTAATTTG+CGG - Chr3:87565213-87565232 None:intergenic 30.0%
CATTCAATGAAAAATGGCTT+CGG - Chr3:87567255-87567274 None:intergenic 30.0%
GCAAATCTTACAATTGAAAG+GGG + Chr3:87564612-87564631 MsG0380016762.01.T01:CDS 30.0%
GCATATAATGCAACACTATT+AGG + Chr3:87565838-87565857 MsG0380016762.01.T01:intron 30.0%
GGCAAATCTTACAATTGAAA+GGG + Chr3:87564611-87564630 MsG0380016762.01.T01:CDS 30.0%
GTATATGTGACAACAGAAAT+TGG + Chr3:87564360-87564379 MsG0380016762.01.T01:intron 30.0%
GTTAAGAAAATTGAGGAATG+AGG - Chr3:87566504-87566523 None:intergenic 30.0%
GTTAATTGGGAAGTGAAAAA+GGG + Chr3:87562690-87562709 MsG0380016762.01.T01:five_prime_UTR 30.0%
TAAAACAGAATACATCAGGT+AGG - Chr3:87566667-87566686 None:intergenic 30.0%
TAGATTTATTCACCCAATGA+GGG + Chr3:87567758-87567777 MsG0380016762.01.T01:three_prime_UTR 30.0%
TCAGTCTTTCATTTCATAAG+TGG + Chr3:87566849-87566868 MsG0380016762.01.T01:intron 30.0%
TCATCTAACAACAACAAATC+TGG - Chr3:87563699-87563718 None:intergenic 30.0%
TCCTAATAAAAAGGGAAATG+TGG + Chr3:87565551-87565570 MsG0380016762.01.T01:intron 30.0%
TCTGTTGTCACATATACATA+AGG - Chr3:87564357-87564376 None:intergenic 30.0%
TCTTTCATTTCATAAGTGGA+AGG + Chr3:87566853-87566872 MsG0380016762.01.T01:intron 30.0%
TGAAGATTATCTTAACAAGC+AGG + Chr3:87563758-87563777 MsG0380016762.01.T01:CDS 30.0%
TTAGATTTATTCACCCAATG+AGG + Chr3:87567757-87567776 MsG0380016762.01.T01:three_prime_UTR 30.0%
TTCATTTGTTTCCGTTCAAA+TGG - Chr3:87564418-87564437 None:intergenic 30.0%
TTGACTGAGAAAATGCTATT+TGG + Chr3:87564787-87564806 MsG0380016762.01.T01:intron 30.0%
TTTATAATTCTTCTACCAGG+AGG + Chr3:87566109-87566128 MsG0380016762.01.T01:intron 30.0%
TTTCATAAGTGGAAGGATAT+AGG + Chr3:87566860-87566879 MsG0380016762.01.T01:intron 30.0%
! ACCACATTTCCCTTTTTATT+AGG - Chr3:87565555-87565574 None:intergenic 30.0%
! AGCAATATCATCTAATTTGC+GGG - Chr3:87565212-87565231 None:intergenic 30.0%
! CAATTTTCTCAAATCAGTGT+CGG - Chr3:87563275-87563294 None:intergenic 30.0%
! CTAGATGCAAATGATGATTT+TGG + Chr3:87566466-87566485 MsG0380016762.01.T01:intron 30.0%
! TAATTTGGTTCCTTTGTGAT+AGG + Chr3:87566685-87566704 MsG0380016762.01.T01:intron 30.0%
! TTTGAAGTGAAGAATCGATT+GGG - Chr3:87562457-87562476 None:intergenic 30.0%
!! AAAAACTTACAAAGGTGTCA+CGG + Chr3:87562657-87562676 MsG0380016762.01.T01:five_prime_UTR 30.0%
!! ATAACCAATGTTACTTTGCA+AGG + Chr3:87563583-87563602 MsG0380016762.01.T01:intron 30.0%
!! GATTCTTCTTCAACTTGTTT+TGG + Chr3:87565406-87565425 MsG0380016762.01.T01:intron 30.0%
!! TTGGATTTGGCTTTCAATTT+AGG - Chr3:87567495-87567514 None:intergenic 30.0%
!!! GACACTTTGTTTTCAATTTC+AGG + Chr3:87563671-87563690 MsG0380016762.01.T01:intron 30.0%
!!! TGTGTTTTTTGTTGGATTCT+TGG + Chr3:87566419-87566438 MsG0380016762.01.T01:intron 30.0%
!!! TTTTGAAGTGAAGAATCGAT+TGG - Chr3:87562458-87562477 None:intergenic 30.0%
AAAAGAAGCAACCAACCTAT+CGG - Chr3:87563105-87563124 None:intergenic 35.0%
AAAGTTTCTCTATTGAGTGG+TGG + Chr3:87565004-87565023 MsG0380016762.01.T01:CDS 35.0%
AAATGAAGAATTGGAACCGA+TGG - Chr3:87564815-87564834 None:intergenic 35.0%
AATCAATATTAGTCGGTCCT+TGG - Chr3:87566091-87566110 None:intergenic 35.0%
ACCTCAAGCATTTCTTTAGA+AGG - Chr3:87565972-87565991 None:intergenic 35.0%
ACGGTTTGAAAGAGGTTAAT+TGG + Chr3:87562676-87562695 MsG0380016762.01.T01:five_prime_UTR 35.0%
ACTCAATTGTGTCAAGATCA+AGG - Chr3:87563734-87563753 None:intergenic 35.0%
AGATTTATTCACCCAATGAG+GGG + Chr3:87567759-87567778 MsG0380016762.01.T01:three_prime_UTR 35.0%
ATAATTTCCCTCAAATGTCC+TGG - Chr3:87563868-87563887 None:intergenic 35.0%
ATATTCTTTCAAAGGCGACT+TGG + Chr3:87563894-87563913 MsG0380016762.01.T01:CDS 35.0%
ATCATGAGATACGGTGATAA+CGG - Chr3:87566156-87566175 None:intergenic 35.0%
ATGGGACACAAAAAAGCTAA+TGG - Chr3:87566287-87566306 None:intergenic 35.0%
CAAGCAAAACAGAAGTCTAA+AGG + Chr3:87567667-87567686 MsG0380016762.01.T01:CDS 35.0%
CAGAAATTGGAAAGACTTCT+TGG + Chr3:87564373-87564392 MsG0380016762.01.T01:intron 35.0%
CCAATTCTCCCAAAATCATA+AGG + Chr3:87564122-87564141 MsG0380016762.01.T01:intron 35.0%
CGGTTTGAAAGAGGTTAATT+GGG + Chr3:87562677-87562696 MsG0380016762.01.T01:five_prime_UTR 35.0%
CGTAAAGTTTCTCTATTGAG+TGG + Chr3:87565001-87565020 MsG0380016762.01.T01:CDS 35.0%
GAAGATCTGTTGTAACAGTT+AGG + Chr3:87564467-87564486 MsG0380016762.01.T01:CDS 35.0%
GAAGTTTACCTTTGACATCT+TGG - Chr3:87567514-87567533 None:intergenic 35.0%
GACGATATTAAAGGACTTCT+TGG + Chr3:87564947-87564966 MsG0380016762.01.T01:CDS 35.0%
GCGGATAGTTAAGAAAATTG+AGG - Chr3:87566511-87566530 None:intergenic 35.0%
GGAGAAAAAATTGCCATTCT+TGG + Chr3:87564633-87564652 MsG0380016762.01.T01:CDS 35.0%
GGTTAATTGGGAAGTGAAAA+AGG + Chr3:87562689-87562708 MsG0380016762.01.T01:five_prime_UTR 35.0%
GTGCAAAGAATTCAAAGAGA+TGG + Chr3:87567689-87567708 MsG0380016762.01.T01:CDS 35.0%
GTTCATAATCTAAGTTGCAC+TGG + Chr3:87567137-87567156 MsG0380016762.01.T01:intron 35.0%
GTTTATGAGTGCTTTCAAAG+AGG + Chr3:87562887-87562906 MsG0380016762.01.T01:CDS 35.0%
TAACTATTTCGAGCAGAATC+AGG + Chr3:87564755-87564774 MsG0380016762.01.T01:CDS 35.0%
TAATGAAGTGAACAGTCTTG+TGG + Chr3:87566808-87566827 MsG0380016762.01.T01:intron 35.0%
TACACCTTGCAAAGTAACAT+TGG - Chr3:87563590-87563609 None:intergenic 35.0%
TACCTTTGACATCTTGGATT+TGG - Chr3:87567508-87567527 None:intergenic 35.0%
TAGTAGAGAAGCCATTTGAA+CGG + Chr3:87564404-87564423 MsG0380016762.01.T01:CDS 35.0%
TATATCAGCATTACAGCCTA+TGG - Chr3:87563566-87563585 None:intergenic 35.0%
TCACGAAGTTACTATCAACA+TGG - Chr3:87567225-87567244 None:intergenic 35.0%
TCAGGTAGGGACTAATAATT+TGG - Chr3:87566653-87566672 None:intergenic 35.0%
TCCAAAACAAGTAGAGTTGA+TGG - Chr3:87565924-87565943 None:intergenic 35.0%
TCGTGAGAAATGATAACCAT+CGG - Chr3:87563789-87563808 None:intergenic 35.0%
TCTCTTCATGTATGGTGTAA+TGG - Chr3:87567731-87567750 None:intergenic 35.0%
TGATTCTGCTCGAAATAGTT+AGG - Chr3:87564756-87564775 None:intergenic 35.0%
TGTTGTAACAGTTAGGAACT+TGG + Chr3:87564474-87564493 MsG0380016762.01.T01:CDS 35.0%
TTACAGTCTCAACAACAACT+TGG + Chr3:87567917-87567936 MsG0380016762.01.T01:three_prime_UTR 35.0%
TTATCACCGTATCTCATGAT+CGG + Chr3:87566156-87566175 MsG0380016762.01.T01:CDS 35.0%
TTGAAGTGAAGAATCGATTG+GGG - Chr3:87562456-87562475 None:intergenic 35.0%
TTGATCTTGACACAATTGAG+TGG + Chr3:87563733-87563752 MsG0380016762.01.T01:CDS 35.0%
! AACACTACTACCGCATTTTT+GGG - Chr3:87564237-87564256 None:intergenic 35.0%
! ACAGTTAGGAACTTGGATTT+TGG + Chr3:87564481-87564500 MsG0380016762.01.T01:CDS 35.0%
! ACCATCAACTCTACTTGTTT+TGG + Chr3:87565920-87565939 MsG0380016762.01.T01:CDS 35.0%
! ACCTTCTAAAGAAATGCTTG+AGG + Chr3:87565968-87565987 MsG0380016762.01.T01:CDS 35.0%
! ATGACGGTTACCTAATTTTG+AGG + Chr3:87567189-87567208 MsG0380016762.01.T01:intron 35.0%
! ATGGCTATGATGATGTTAAG+AGG + Chr3:87565353-87565372 MsG0380016762.01.T01:intron 35.0%
! GAGTTTGAATGTGAAAGTGT+TGG + Chr3:87563638-87563657 MsG0380016762.01.T01:intron 35.0%
! GTGAATGATTTGGAGTTGAT+GGG + Chr3:87562963-87562982 MsG0380016762.01.T01:CDS 35.0%
! TCAAGATCAAGGTGATTTGT+AGG - Chr3:87563723-87563742 None:intergenic 35.0%
! TCATGTATGGTGTAATGGAA+TGG - Chr3:87567726-87567745 None:intergenic 35.0%
! TCGCCTTTGAAAGAATATAC+TGG - Chr3:87563892-87563911 None:intergenic 35.0%
! TGACGGTTACCTAATTTTGA+GGG + Chr3:87567190-87567209 MsG0380016762.01.T01:intron 35.0%
! TGTGAATGATTTGGAGTTGA+TGG + Chr3:87562962-87562981 MsG0380016762.01.T01:CDS 35.0%
! TTGCCTTGTTGAAAAGTTTC+TGG - Chr3:87564596-87564615 None:intergenic 35.0%
! TTGCTATTAAGCTCTCTTAG+TGG + Chr3:87567048-87567067 MsG0380016762.01.T01:intron 35.0%
! TTTAGTTGGTGTAAATGGTG+CGG + Chr3:87562725-87562744 MsG0380016762.01.T01:five_prime_UTR 35.0%
!! AAAATGCTATTTGGTGCCAT+CGG + Chr3:87564796-87564815 MsG0380016762.01.T01:intron 35.0%
!! AAACAAGAGAGTTGATAAGC+AGG + Chr3:87563966-87563985 MsG0380016762.01.T01:CDS 35.0%
!! AAAGTACCGATCATGAGATA+CGG - Chr3:87566165-87566184 None:intergenic 35.0%
!! ATGTGTTCCATTTTTCGTCA+AGG + Chr3:87567162-87567181 MsG0380016762.01.T01:intron 35.0%
!! CCTTATGATTTTGGGAGAAT+TGG - Chr3:87564125-87564144 None:intergenic 35.0%
!! TGAATGATTTGGAGTTGATG+GGG + Chr3:87562964-87562983 MsG0380016762.01.T01:CDS 35.0%
!!! ACTTAGTTTTGACACTTGAG+AGG + Chr3:87566976-87566995 MsG0380016762.01.T01:intron 35.0%
!!! CTTAGTTTTGACACTTGAGA+GGG + Chr3:87566977-87566996 MsG0380016762.01.T01:intron 35.0%
!!! GAAAATTGCGTTTTTGAGTC+AGG + Chr3:87562827-87562846 MsG0380016762.01.T01:CDS 35.0%
!!! GTTTTTGAGTCAGGAATTTG+AGG + Chr3:87562836-87562855 MsG0380016762.01.T01:CDS 35.0%
!!! TTTTGCTCTCCTTTGAAATG+TGG + Chr3:87565262-87565281 MsG0380016762.01.T01:intron 35.0%
AAAACTCTGTATCCGATCCA+AGG + Chr3:87566071-87566090 MsG0380016762.01.T01:intron 40.0%
AAGGAAGAAGCAAAAGATGC+AGG + Chr3:87567636-87567655 MsG0380016762.01.T01:CDS 40.0%
ACACAAAAAAGCTAATGGCG+GGG - Chr3:87566282-87566301 None:intergenic 40.0%
ACATCCATTTGGACCAAGAA+TGG - Chr3:87564649-87564668 None:intergenic 40.0%
AGAGATGAGAGGTAAAACAG+AGG - Chr3:87565640-87565659 None:intergenic 40.0%
AGATTGGACGTGTCTTCAAT+TGG + Chr3:87563347-87563366 MsG0380016762.01.T01:CDS 40.0%
AGCCAAATCCAAGATGTCAA+AGG + Chr3:87567503-87567522 MsG0380016762.01.T01:CDS 40.0%
AGTGAAAAAGGGTGAGAAAG+TGG + Chr3:87562701-87562720 MsG0380016762.01.T01:five_prime_UTR 40.0%
ATATTAGTCGGTCCTTGGAT+CGG - Chr3:87566086-87566105 None:intergenic 40.0%
ATCAACCATCTCAATGTTCG+AGG - Chr3:87565389-87565408 None:intergenic 40.0%
ATCATCCAACACAATGGAGT+TGG + Chr3:87562309-87562328 MsG0380016762.01.T01:five_prime_UTR 40.0%
ATCCATACACCTGCATTCTT+TGG + Chr3:87565456-87565475 MsG0380016762.01.T01:intron 40.0%
ATGAAATGCCCAAAGAATGC+AGG - Chr3:87565468-87565487 None:intergenic 40.0%
ATGAACAAGATCGCCAAGAA+GGG - Chr3:87566540-87566559 None:intergenic 40.0%
ATGATCAGAAGATTGTGTGG+CGG - Chr3:87562294-87562313 None:intergenic 40.0%
ATTCTTGGTCCAAATGGATG+TGG + Chr3:87564648-87564667 MsG0380016762.01.T01:CDS 40.0%
ATTGCCATTCTTGGTCCAAA+TGG + Chr3:87564642-87564661 MsG0380016762.01.T01:CDS 40.0%
ATTGGAAAGACTTCTTGGAG+AGG + Chr3:87564378-87564397 MsG0380016762.01.T01:CDS 40.0%
CAACATGTTAGTGTCGTGAT+CGG - Chr3:87563249-87563268 None:intergenic 40.0%
CATACAGCCTTGACGAAAAA+TGG - Chr3:87567172-87567191 None:intergenic 40.0%
CTGTGAAACTCATATGGATG+AGG + Chr3:87567533-87567552 MsG0380016762.01.T01:intron 40.0%
CTTCTGATCATCCAACACAA+TGG + Chr3:87562303-87562322 MsG0380016762.01.T01:five_prime_UTR 40.0%
GACACAAAAAAGCTAATGGC+GGG - Chr3:87566283-87566302 None:intergenic 40.0%
GAGGCAATAAATGAGTACGA+GGG + Chr3:87566128-87566147 MsG0380016762.01.T01:CDS 40.0%
GAGTGCTTTCAAAGAGGAAA+TGG + Chr3:87562893-87562912 MsG0380016762.01.T01:CDS 40.0%
GATAGTTGAAGCAGGTTAAC+TGG + Chr3:87566343-87566362 MsG0380016762.01.T01:intron 40.0%
GATGAGGATTATTGCAGGTT+TGG + Chr3:87562761-87562780 MsG0380016762.01.T01:exon 40.0%
GATTCAGAGATAGTTGAAGC+AGG + Chr3:87566335-87566354 MsG0380016762.01.T01:intron 40.0%
GATTTATTCACCCAATGAGG+GGG + Chr3:87567760-87567779 MsG0380016762.01.T01:three_prime_UTR 40.0%
GGACACAAAAAAGCTAATGG+CGG - Chr3:87566284-87566303 None:intergenic 40.0%
GGTATATCCAAGTGATTCGT+TGG - Chr3:87565951-87565970 None:intergenic 40.0%
GTGAAAAAGGGTGAGAAAGT+GGG + Chr3:87562702-87562721 MsG0380016762.01.T01:five_prime_UTR 40.0%
TACAGCCTATGGTTAACCAT+AGG - Chr3:87563555-87563574 None:intergenic 40.0%
TATTAAGCTCTCTTAGTGGC+AGG + Chr3:87567052-87567071 MsG0380016762.01.T01:intron 40.0%
TCCATACACCTGCATTCTTT+GGG + Chr3:87565457-87565476 MsG0380016762.01.T01:intron 40.0%
TGAAACACAGTATGCTGCAT+GGG + Chr3:87563919-87563938 MsG0380016762.01.T01:CDS 40.0%
TGAATCGAGAATGAATGCTC+CGG - Chr3:87562362-87562381 None:intergenic 40.0%
TGAGGGTTCTGTGAATGATT+TGG + Chr3:87562953-87562972 MsG0380016762.01.T01:CDS 40.0%
TGCTTTCAAAGAGGAAATGG+AGG + Chr3:87562896-87562915 MsG0380016762.01.T01:CDS 40.0%
TGGAGGAGTGACGATATTAA+AGG + Chr3:87564938-87564957 MsG0380016762.01.T01:CDS 40.0%
TGGATGATCAGAAGATTGTG+TGG - Chr3:87562297-87562316 None:intergenic 40.0%
TGGTGGTATTGCAAATTGCA+TGG + Chr3:87563380-87563399 MsG0380016762.01.T01:CDS 40.0%
TTAATCACATTCCCCGAATC+CGG - Chr3:87562792-87562811 None:intergenic 40.0%
TTGAAACACAGTATGCTGCA+TGG + Chr3:87563918-87563937 MsG0380016762.01.T01:CDS 40.0%
TTGAGACTGTAAACTTCACC+AGG - Chr3:87567909-87567928 None:intergenic 40.0%
TTGATTTAGTCAACAGGCTG+AGG + Chr3:87564862-87564881 MsG0380016762.01.T01:intron 40.0%
! AGACATATGGTGATGCTGTA+AGG + Chr3:87567282-87567301 MsG0380016762.01.T01:intron 40.0%
! AGTGTTAGTGTTGAAGGTGT+TGG - Chr3:87562431-87562450 None:intergenic 40.0%
! ATCAATAAAGGGCACACCTT+AGG + Chr3:87563524-87563543 MsG0380016762.01.T01:intron 40.0%
! CAACACTACTACCGCATTTT+TGG - Chr3:87564238-87564257 None:intergenic 40.0%
! GAAATTGGAGAAAGTGCAGA+AGG + Chr3:87562926-87562945 MsG0380016762.01.T01:CDS 40.0%
! GACATATGGTGATGCTGTAA+GGG + Chr3:87567283-87567302 MsG0380016762.01.T01:intron 40.0%
! GTGCCAGAAACTTTTCAACA+AGG + Chr3:87564590-87564609 MsG0380016762.01.T01:intron 40.0%
! GTGGGTTTAGTTGGTGTAAA+TGG + Chr3:87562720-87562739 MsG0380016762.01.T01:five_prime_UTR 40.0%
! GTTCCATGTTTTACTAGGCA+CGG + Chr3:87565871-87565890 MsG0380016762.01.T01:intron 40.0%
! TCGTTCATCGACTGAAGTAT+CGG - Chr3:87562566-87562585 None:intergenic 40.0%
! TCTTGGCAAGATTTTGCTTC+AGG + Chr3:87563151-87563170 MsG0380016762.01.T01:CDS 40.0%
! TTAGTTGGTGTAAATGGTGC+GGG + Chr3:87562726-87562745 MsG0380016762.01.T01:five_prime_UTR 40.0%
! TTGGTTGCTTCTTTTAGTGG+TGG + Chr3:87563110-87563129 MsG0380016762.01.T01:CDS 40.0%
! TTTTCGTCAAGGCTGTATGA+CGG + Chr3:87567173-87567192 MsG0380016762.01.T01:intron 40.0%
!! AAGGGAAATGTGGTGCTATT+AGG + Chr3:87565561-87565580 MsG0380016762.01.T01:intron 40.0%
!! AGAGAGTTGATAAGCAGGTT+AGG + Chr3:87563971-87563990 MsG0380016762.01.T01:CDS 40.0%
!! AGGTTGGTTGCTTCTTTTAG+TGG + Chr3:87563107-87563126 MsG0380016762.01.T01:CDS 40.0%
!! CTTCTGTTTTGCTTGCTGAA+AGG - Chr3:87567662-87567681 None:intergenic 40.0%
!! GCTGACTTGATTTAGTCAAC+AGG + Chr3:87564856-87564875 MsG0380016762.01.T01:intron 40.0%
!! GTGTTAGTGTTGAAGGTGTT+GGG - Chr3:87562430-87562449 None:intergenic 40.0%
!! TTGCTTCTTTTAGTGGTGGA+TGG + Chr3:87563114-87563133 MsG0380016762.01.T01:CDS 40.0%
!! TTTTACCCAGAAGAAGTGTG+AGG - Chr3:87562258-87562277 None:intergenic 40.0%
!!! GAACTTGGATTTTGGCTTTG+AGG + Chr3:87564489-87564508 MsG0380016762.01.T01:CDS 40.0%
!!! GCTGGCTTTTTGCAAATTCA+TGG + Chr3:87565893-87565912 MsG0380016762.01.T01:CDS 40.0%
AAACTGACATGGGTGTATCC+AGG + Chr3:87563847-87563866 MsG0380016762.01.T01:intron 45.0%
AAAGAGGAAATGGAGGTTGC+GGG + Chr3:87562903-87562922 MsG0380016762.01.T01:CDS 45.0%
ACCATCTCAATGTTCGAGGT+TGG - Chr3:87565385-87565404 None:intergenic 45.0%
ACGCAGATGAGGATTATTGC+AGG + Chr3:87562756-87562775 MsG0380016762.01.T01:exon 45.0%
AGAAGATTGTGTGGCGGTTA+TGG - Chr3:87562288-87562307 None:intergenic 45.0%
AGCTACTGAAGTTTCGTCCA+CGG - Chr3:87562518-87562537 None:intergenic 45.0%
AGGATAACTTCACCGCTGAT+TGG - Chr3:87564714-87564733 None:intergenic 45.0%
ATAGAGAGAGAGAGAGAGAG+AGG - Chr3:87565682-87565701 None:intergenic 45.0%
ATCAGCGGTGAAGTTATCCT+TGG + Chr3:87564714-87564733 MsG0380016762.01.T01:CDS 45.0%
ATCAGGCTGAGAAAGAAGCA+AGG + Chr3:87567617-87567636 MsG0380016762.01.T01:intron 45.0%
ATTAGGTTCTCACCATGGCA+GGG + Chr3:87565578-87565597 MsG0380016762.01.T01:intron 45.0%
CAAAGAGGAAATGGAGGTTG+CGG + Chr3:87562902-87562921 MsG0380016762.01.T01:CDS 45.0%
CATGCTTCCATGGTACTCTT+CGG + Chr3:87565760-87565779 MsG0380016762.01.T01:intron 45.0%
CGTACTCATTTATTGCCTCC+TGG - Chr3:87566127-87566146 None:intergenic 45.0%
CTGCACCTATGGTTAACCAT+AGG + Chr3:87563547-87563566 MsG0380016762.01.T01:intron 45.0%
CTTCAATTGGAAGTGGCTAG+TGG + Chr3:87563360-87563379 MsG0380016762.01.T01:CDS 45.0%
GACGTGTCTTCAATTGGAAG+TGG + Chr3:87563353-87563372 MsG0380016762.01.T01:CDS 45.0%
GAGAGCTTAATAGCAACAGC+TGG - Chr3:87567044-87567063 None:intergenic 45.0%
GAGGATTATTGCAGGTTTGG+AGG + Chr3:87562764-87562783 MsG0380016762.01.T01:CDS 45.0%
GATAGCAAATACGCCTGTGA+GGG + Chr3:87566910-87566929 MsG0380016762.01.T01:intron 45.0%
GATGAACAAGATCGCCAAGA+AGG - Chr3:87566541-87566560 None:intergenic 45.0%
GATGAGATGAGTGTGGGATA+GGG - Chr3:87562401-87562420 None:intergenic 45.0%
GCAATACATTATGCTCCCCA+AGG - Chr3:87564734-87564753 None:intergenic 45.0%
GCGGGTAAAGAAGCAATTCT+CGG - Chr3:87565194-87565213 None:intergenic 45.0%
GGAGAAGAATCTTGATGCCA+GGG + Chr3:87567428-87567447 MsG0380016762.01.T01:CDS 45.0%
GGAGGCAATAAATGAGTACG+AGG + Chr3:87566127-87566146 MsG0380016762.01.T01:intron 45.0%
GGATGAACCAACGAATCACT+TGG + Chr3:87565941-87565960 MsG0380016762.01.T01:CDS 45.0%
GGCACTTGATCTGGAAAAGA+CGG + Chr3:87564883-87564902 MsG0380016762.01.T01:CDS 45.0%
GGTGTATCCAGGACATTTGA+GGG + Chr3:87563858-87563877 MsG0380016762.01.T01:intron 45.0%
GGTTTAGAGAAGCCAATCAG+CGG + Chr3:87564699-87564718 MsG0380016762.01.T01:CDS 45.0%
GTACTCTTGCCACATCCATT+TGG - Chr3:87564660-87564679 None:intergenic 45.0%
GTCGAGTCTGTATTGGAGAT+TGG + Chr3:87563331-87563350 MsG0380016762.01.T01:CDS 45.0%
TAGAGAGAGAGAGAGAGAGA+GGG - Chr3:87565681-87565700 None:intergenic 45.0%
TATTAGGTTCTCACCATGGC+AGG + Chr3:87565577-87565596 MsG0380016762.01.T01:intron 45.0%
TATTGCAGGTTTGGAGGAAC+CGG + Chr3:87562770-87562789 MsG0380016762.01.T01:CDS 45.0%
TCAGCGGTGAAGTTATCCTT+GGG + Chr3:87564715-87564734 MsG0380016762.01.T01:CDS 45.0%
TCCAACCTCGAACATTGAGA+TGG + Chr3:87565381-87565400 MsG0380016762.01.T01:intron 45.0%
TCTACACCAAAACCAAGCTC+AGG - Chr3:87563077-87563096 None:intergenic 45.0%
TCTCTTAGTGGCAGGATTCA+GGG + Chr3:87567060-87567079 MsG0380016762.01.T01:intron 45.0%
TGAACAAGATCGCCAAGAAG+GGG - Chr3:87566539-87566558 None:intergenic 45.0%
TGATAGCAAATACGCCTGTG+AGG + Chr3:87566909-87566928 MsG0380016762.01.T01:intron 45.0%
TGGAGAAGAATCTTGATGCC+AGG + Chr3:87567427-87567446 MsG0380016762.01.T01:CDS 45.0%
TGTAGAGGATTCCGATAGGT+TGG + Chr3:87563091-87563110 MsG0380016762.01.T01:CDS 45.0%
TTAACCATAGGTGCAGCCTA+AGG - Chr3:87563543-87563562 None:intergenic 45.0%
TTGATAAGCAGGTTAGGTGC+CGG + Chr3:87563977-87563996 MsG0380016762.01.T01:CDS 45.0%
TTGGTGTAGAGGATTCCGAT+AGG + Chr3:87563087-87563106 MsG0380016762.01.T01:CDS 45.0%
TTTGGCGATGAGATGAGTGT+GGG - Chr3:87562407-87562426 None:intergenic 45.0%
! AAAAAAGCTAATGGCGGGGA+GGG - Chr3:87566278-87566297 None:intergenic 45.0%
! AAGGTGTCACGGTTTGAAAG+AGG + Chr3:87562668-87562687 MsG0380016762.01.T01:five_prime_UTR 45.0%
! AATTTGAGGTTTCGCCGAGT+AGG + Chr3:87562850-87562869 MsG0380016762.01.T01:CDS 45.0%
! GACTGCTGAGAAGGTATATG+TGG + Chr3:87564021-87564040 MsG0380016762.01.T01:intron 45.0%
! GGGGTTAGTGTTAGTGTTGA+AGG - Chr3:87562437-87562456 None:intergenic 45.0%
! GGTGAGAAAGTGGGTTTAGT+TGG + Chr3:87562711-87562730 MsG0380016762.01.T01:five_prime_UTR 45.0%
! GTGCTATTAGGTTCTCACCA+TGG + Chr3:87565573-87565592 MsG0380016762.01.T01:intron 45.0%
! TAGTCCTTTTGATCCCTCAC+AGG - Chr3:87566926-87566945 None:intergenic 45.0%
! TCTATTGAGTGGTGGTGAGA+AGG + Chr3:87565012-87565031 MsG0380016762.01.T01:CDS 45.0%
! TGTCAGTGTCGAGTCTGTAT+TGG + Chr3:87563324-87563343 MsG0380016762.01.T01:intron 45.0%
! TTGATGCCTGAGCTTGGTTT+TGG + Chr3:87563068-87563087 MsG0380016762.01.T01:CDS 45.0%
!! AGTAAGTTGATGCCTGAGCT+TGG + Chr3:87563062-87563081 MsG0380016762.01.T01:CDS 45.0%
!! AGTGTTGAAGGTGTTGGGTT+TGG - Chr3:87562425-87562444 None:intergenic 45.0%
!! ATGATTTGGAGTTGATGGGG+AGG + Chr3:87562967-87562986 MsG0380016762.01.T01:CDS 45.0%
!! GTTGTATCCGAAGAGTACCA+TGG - Chr3:87565770-87565789 None:intergenic 45.0%
!!! TGAGCTTGGTTTTGGTGTAG+AGG + Chr3:87563076-87563095 MsG0380016762.01.T01:CDS 45.0%
!!! TTTTTTTTTACTAAAATTAA+GGG + Chr3:87567017-87567036 MsG0380016762.01.T01:intron 5.0%
!!! TTTTTTTTTTACTAAAATTA+AGG + Chr3:87567016-87567035 MsG0380016762.01.T01:intron 5.0%
AAAATCAGGTTCCCTGTGCG+TGG + Chr3:87564436-87564455 MsG0380016762.01.T01:CDS 50.0%
AAGAGGAAATGGAGGTTGCG+GGG + Chr3:87562904-87562923 MsG0380016762.01.T01:CDS 50.0%
AATGGAGGTTGCGGGGAAAT+TGG + Chr3:87562911-87562930 MsG0380016762.01.T01:CDS 50.0%
ACGAGCTCAGGCTGTGAATT+TGG + Chr3:87563019-87563038 MsG0380016762.01.T01:CDS 50.0%
ACTTCAGTCGATGAACGACG+CGG + Chr3:87562568-87562587 MsG0380016762.01.T01:five_prime_UTR 50.0%
AGACGAAACGCTTGAAGCTC+CGG - Chr3:87562614-87562633 None:intergenic 50.0%
AGGTTTGGAGGAACCGGATT+CGG + Chr3:87562776-87562795 MsG0380016762.01.T01:CDS 50.0%
CAATTGGAAGTGGCTAGTGG+TGG + Chr3:87563363-87563382 MsG0380016762.01.T01:CDS 50.0%
CACCTTCTATCCCCCTCATT+GGG - Chr3:87567773-87567792 None:intergenic 50.0%
CAGCCGTGCCTAGTAAAACA+TGG - Chr3:87565877-87565896 None:intergenic 50.0%
CAGCGGTGAAGTTATCCTTG+GGG + Chr3:87564716-87564735 MsG0380016762.01.T01:CDS 50.0%
CGATGAGATGAGTGTGGGAT+AGG - Chr3:87562402-87562421 None:intergenic 50.0%
CGTTTCGTCTGGTGTGAAGT+TGG + Chr3:87562624-87562643 MsG0380016762.01.T01:five_prime_UTR 50.0%
CTCTCTTAGTGGCAGGATTC+AGG + Chr3:87567059-87567078 MsG0380016762.01.T01:intron 50.0%
CTCTGCCTCACACTTCTTCT+GGG + Chr3:87562250-87562269 MsG0380016762.01.T01:five_prime_UTR 50.0%
GAACAAGATCGCCAAGAAGG+GGG - Chr3:87566538-87566557 None:intergenic 50.0%
GCCCAAAGAATGCAGGTGTA+TGG - Chr3:87565461-87565480 None:intergenic 50.0%
GGAAAAAGAGCTTGAACGCC+AGG + Chr3:87567449-87567468 MsG0380016762.01.T01:CDS 50.0%
GGGTGTATCCAGGACATTTG+AGG + Chr3:87563857-87563876 MsG0380016762.01.T01:intron 50.0%
GTTTGGCGATGAGATGAGTG+TGG - Chr3:87562408-87562427 None:intergenic 50.0%
TAACAAGCAGGATGTGCCGA+TGG + Chr3:87563770-87563789 MsG0380016762.01.T01:CDS 50.0%
TACGCCTGTGAGGGATCAAA+AGG + Chr3:87566919-87566938 MsG0380016762.01.T01:intron 50.0%
TACTGAAGTTTCGTCCACGG+CGG - Chr3:87562515-87562534 None:intergenic 50.0%
TAGTGGCAGGATTCAGGGAA+GGG + Chr3:87567065-87567084 MsG0380016762.01.T01:intron 50.0%
TCACCTTCTATCCCCCTCAT+TGG - Chr3:87567774-87567793 None:intergenic 50.0%
TCTCTGCCTCACACTTCTTC+TGG + Chr3:87562249-87562268 MsG0380016762.01.T01:five_prime_UTR 50.0%
TGAGGCCAACTCCATTGTGT+TGG - Chr3:87562317-87562336 None:intergenic 50.0%
TGGCAGATGAGGATGTGTCT+TGG + Chr3:87563134-87563153 MsG0380016762.01.T01:CDS 50.0%
TTAGTGGCAGGATTCAGGGA+AGG + Chr3:87567064-87567083 MsG0380016762.01.T01:intron 50.0%
TTCTCACCATGGCAGGGTTT+GGG + Chr3:87565584-87565603 MsG0380016762.01.T01:intron 50.0%
TTTGCTTCAGAGACGAGCTC+AGG + Chr3:87563007-87563026 MsG0380016762.01.T01:CDS 50.0%
! AAAAAGCTAATGGCGGGGAG+GGG - Chr3:87566277-87566296 None:intergenic 50.0%
! CAAAAAAGCTAATGGCGGGG+AGG - Chr3:87566279-87566298 None:intergenic 50.0%
! CATGTTTTACTAGGCACGGC+TGG + Chr3:87565875-87565894 MsG0380016762.01.T01:intron 50.0%
! GCGTTCAAGCTCTTTTTCCC+TGG - Chr3:87567448-87567467 None:intergenic 50.0%
!! AAAGTGCAGAAGGCGCTTGA+GGG + Chr3:87562936-87562955 MsG0380016762.01.T01:CDS 50.0%
!! TTAGTGGTGGATGGCAGATG+AGG + Chr3:87563123-87563142 MsG0380016762.01.T01:CDS 50.0%
AGAGAGAGAGGGAGAGAGAG+AGG - Chr3:87565658-87565677 None:intergenic 55.0%
ATCGTCACTCCTCCAGTCCT+CGG - Chr3:87564933-87564952 None:intergenic 55.0%
CACACCTTAGGCTGCACCTA+TGG + Chr3:87563536-87563555 MsG0380016762.01.T01:intron 55.0%
CACCCAATGAGGGGGATAGA+AGG + Chr3:87567768-87567787 MsG0380016762.01.T01:three_prime_UTR 55.0%
CCTTCTCAGCAGTCGAAGCA+CGG - Chr3:87564015-87564034 None:intergenic 55.0%
CGAGAATGAATGCTCCGGTG+AGG - Chr3:87562357-87562376 None:intergenic 55.0%
CTTTGTCGTCAAGCTCAGCC+TGG - Chr3:87567470-87567489 None:intergenic 55.0%
GAAGTGTGAGGCAGAGAACG+AGG - Chr3:87562246-87562265 None:intergenic 55.0%
GACGGTGCTTGAGACAGTAG+AGG + Chr3:87564901-87564920 MsG0380016762.01.T01:CDS 55.0%
GAGAGAGAGGGAGAGAGAGA+GGG - Chr3:87565657-87565676 None:intergenic 55.0%
GAGGGAGAGAGAGAGATGAG+AGG - Chr3:87565651-87565670 None:intergenic 55.0%
GGAGCTTCAAGCGTTTCGTC+TGG + Chr3:87562613-87562632 MsG0380016762.01.T01:five_prime_UTR 55.0%
GGCACTGTGCAGGATTATGC+TGG + Chr3:87566224-87566243 MsG0380016762.01.T01:CDS 55.0%
GGTTTGGAGGAACCGGATTC+GGG + Chr3:87562777-87562796 MsG0380016762.01.T01:CDS 55.0%
GTTCTCACCATGGCAGGGTT+TGG + Chr3:87565583-87565602 MsG0380016762.01.T01:intron 55.0%
GTTTGGAGGAACCGGATTCG+GGG + Chr3:87562778-87562797 MsG0380016762.01.T01:CDS 55.0%
TATCCGCTTTGCCCCCTTCT+TGG + Chr3:87566524-87566543 MsG0380016762.01.T01:intron 55.0%
TCTCACCATGGCAGGGTTTG+GGG + Chr3:87565585-87565604 MsG0380016762.01.T01:intron 55.0%
TCTTCCCTCACCGTCCTACT+CGG - Chr3:87562867-87562886 None:intergenic 55.0%
TGAGGTTTCGCCGAGTAGGA+CGG + Chr3:87562854-87562873 MsG0380016762.01.T01:CDS 55.0%
TTCCACTGCTTCCACGCACA+GGG - Chr3:87564450-87564469 None:intergenic 55.0%
! AAAAGCTAATGGCGGGGAGG+GGG - Chr3:87566276-87566295 None:intergenic 55.0%
! ACAGGCTGAGGCACTTGATC+TGG + Chr3:87564874-87564893 MsG0380016762.01.T01:intron 55.0%
!! GAAAGTGCAGAAGGCGCTTG+AGG + Chr3:87562935-87562954 MsG0380016762.01.T01:CDS 55.0%
!! TTAGGTGCCGGAGCAAGTTC+TGG + Chr3:87563989-87564008 MsG0380016762.01.T01:CDS 55.0%
!!! GGAGTTGATGGGGAGGCTTT+TGG + Chr3:87562974-87562993 MsG0380016762.01.T01:CDS 55.0%
ACCATGGCAGGGTTTGGGGA+AGG + Chr3:87565589-87565608 MsG0380016762.01.T01:intron 60.0%
AGTTTCGTCCACGGCGGCTA+CGG - Chr3:87562509-87562528 None:intergenic 60.0%
CCATGGCAGGGTTTGGGGAA+GGG + Chr3:87565590-87565609 MsG0380016762.01.T01:intron 60.0%
CCGTGCTTCGACTGCTGAGA+AGG + Chr3:87564012-87564031 MsG0380016762.01.T01:CDS 60.0%
CGGGAAAGACGACGCAGATG+AGG + Chr3:87562745-87562764 MsG0380016762.01.T01:exon 60.0%
CTTCCACTGCTTCCACGCAC+AGG - Chr3:87564451-87564470 None:intergenic 60.0%
GACAGTAGAGGAAGCTGCCG+AGG + Chr3:87564913-87564932 MsG0380016762.01.T01:CDS 60.0%
GGCAGGATTCAGGGAAGGGT+GGG + Chr3:87567069-87567088 MsG0380016762.01.T01:intron 60.0%
TAGAGGAAGCTGCCGAGGAC+TGG + Chr3:87564918-87564937 MsG0380016762.01.T01:CDS 60.0%
TCGCCAAGAAGGGGGCAAAG+CGG - Chr3:87566530-87566549 None:intergenic 60.0%
TGAATGCTCCGGTGAGGTCG+AGG - Chr3:87562351-87562370 None:intergenic 60.0%
TGAGTGTGGGATAGGGTGCG+TGG - Chr3:87562394-87562413 None:intergenic 60.0%
TGGCAGGATTCAGGGAAGGG+TGG + Chr3:87567068-87567087 MsG0380016762.01.T01:intron 60.0%
TGTGGGATAGGGTGCGTGGA+AGG - Chr3:87562390-87562409 None:intergenic 60.0%
TTCCCTGTGCGTGGAAGCAG+TGG + Chr3:87564445-87564464 MsG0380016762.01.T01:CDS 60.0%
TTCGCCGAGTAGGACGGTGA+GGG + Chr3:87562860-87562879 MsG0380016762.01.T01:CDS 60.0%
TTTCGCCGAGTAGGACGGTG+AGG + Chr3:87562859-87562878 MsG0380016762.01.T01:CDS 60.0%
! AAAGCTAATGGCGGGGAGGG+GGG - Chr3:87566275-87566294 None:intergenic 60.0%
! AGCACGGCCAGAACTTGCTC+CGG - Chr3:87563999-87564018 None:intergenic 60.0%
!! GTCGAGGTGGTGGAGCTTTG+AGG - Chr3:87562335-87562354 None:intergenic 60.0%
AGGAAGCTGCCGAGGACTGG+AGG + Chr3:87564921-87564940 MsG0380016762.01.T01:CDS 65.0%
ATGCTCCGGTGAGGTCGAGG+TGG - Chr3:87562348-87562367 None:intergenic 65.0%
CCCTTCCCCAAACCCTGCCA+TGG - Chr3:87565593-87565612 None:intergenic 65.0%
CTCCACCACCTCGACCTCAC+CGG + Chr3:87562340-87562359 MsG0380016762.01.T01:five_prime_UTR 65.0%
TTTATCCGCCGTAGCCGCCG+TGG + Chr3:87562498-87562517 MsG0380016762.01.T01:five_prime_UTR 65.0%
! AAGCTAATGGCGGGGAGGGG+GGG - Chr3:87566274-87566293 None:intergenic 65.0%
CTCCGGTGAGGTCGAGGTGG+TGG - Chr3:87562345-87562364 None:intergenic 70.0%
TTCGTCCACGGCGGCTACGG+CGG - Chr3:87562506-87562525 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 87562222 87567980 87562222 ID=MsG0380016762.01;Name=MsG0380016762.01
Chr3 mRNA 87562222 87567980 87562222 ID=MsG0380016762.01.T01;Parent=MsG0380016762.01;Name=MsG0380016762.01.T01;_AED=0.41;_eAED=0.43;_QI=540|0.7|0.72|1|1|1|11|263|543
Chr3 exon 87562222 87563172 87562222 ID=MsG0380016762.01.T01:exon:22577;Parent=MsG0380016762.01.T01
Chr3 exon 87563330 87563401 87563330 ID=MsG0380016762.01.T01:exon:22578;Parent=MsG0380016762.01.T01
Chr3 exon 87563693 87563791 87563693 ID=MsG0380016762.01.T01:exon:22579;Parent=MsG0380016762.01.T01
Chr3 exon 87563893 87564033 87563893 ID=MsG0380016762.01.T01:exon:22580;Parent=MsG0380016762.01.T01
Chr3 exon 87564376 87564516 87564376 ID=MsG0380016762.01.T01:exon:22581;Parent=MsG0380016762.01.T01
Chr3 exon 87564597 87564776 87564597 ID=MsG0380016762.01.T01:exon:22582;Parent=MsG0380016762.01.T01
Chr3 exon 87564878 87565033 87564878 ID=MsG0380016762.01.T01:exon:22583;Parent=MsG0380016762.01.T01
Chr3 exon 87565888 87565989 87565888 ID=MsG0380016762.01.T01:exon:22584;Parent=MsG0380016762.01.T01
Chr3 exon 87566128 87566256 87566128 ID=MsG0380016762.01.T01:exon:22585;Parent=MsG0380016762.01.T01
Chr3 exon 87567420 87567524 87567420 ID=MsG0380016762.01.T01:exon:22586;Parent=MsG0380016762.01.T01
Chr3 exon 87567622 87567980 87567622 ID=MsG0380016762.01.T01:exon:22587;Parent=MsG0380016762.01.T01
Chr3 five_prime_UTR 87562222 87562761 87562222 ID=MsG0380016762.01.T01:five_prime_utr;Parent=MsG0380016762.01.T01
Chr3 CDS 87562762 87563172 87562762 ID=MsG0380016762.01.T01:cds;Parent=MsG0380016762.01.T01
Chr3 CDS 87563330 87563401 87563330 ID=MsG0380016762.01.T01:cds;Parent=MsG0380016762.01.T01
Chr3 CDS 87563693 87563791 87563693 ID=MsG0380016762.01.T01:cds;Parent=MsG0380016762.01.T01
Chr3 CDS 87563893 87564033 87563893 ID=MsG0380016762.01.T01:cds;Parent=MsG0380016762.01.T01
Chr3 CDS 87564376 87564516 87564376 ID=MsG0380016762.01.T01:cds;Parent=MsG0380016762.01.T01
Chr3 CDS 87564597 87564776 87564597 ID=MsG0380016762.01.T01:cds;Parent=MsG0380016762.01.T01
Chr3 CDS 87564878 87565033 87564878 ID=MsG0380016762.01.T01:cds;Parent=MsG0380016762.01.T01
Chr3 CDS 87565888 87565989 87565888 ID=MsG0380016762.01.T01:cds;Parent=MsG0380016762.01.T01
Chr3 CDS 87566128 87566256 87566128 ID=MsG0380016762.01.T01:cds;Parent=MsG0380016762.01.T01
Chr3 CDS 87567420 87567524 87567420 ID=MsG0380016762.01.T01:cds;Parent=MsG0380016762.01.T01
Chr3 CDS 87567622 87567717 87567622 ID=MsG0380016762.01.T01:cds;Parent=MsG0380016762.01.T01
Chr3 three_prime_UTR 87567718 87567980 87567718 ID=MsG0380016762.01.T01:three_prime_utr;Parent=MsG0380016762.01.T01
Gene Sequence

>MsG0380016762.01.T01

ATGAGGATTATTGCAGGTTTGGAGGAACCGGATTCGGGGAATGTGATTAAAGCGAAACCAAATATGAAAATTGCGTTTTTGAGTCAGGAATTTGAGGTTTCGCCGAGTAGGACGGTGAGGGAAGAGTTTATGAGTGCTTTCAAAGAGGAAATGGAGGTTGCGGGGAAATTGGAGAAAGTGCAGAAGGCGCTTGAGGGTTCTGTGAATGATTTGGAGTTGATGGGGAGGCTTTTGGATGAGTTTGATTTGCTTCAGAGACGAGCTCAGGCTGTGAATTTGGATGTTGTTGATTCGAAGATAAGTAAGTTGATGCCTGAGCTTGGTTTTGGTGTAGAGGATTCCGATAGGTTGGTTGCTTCTTTTAGTGGTGGATGGCAGATGAGGATGTGTCTTGGCAAGATTTTGCTTCAGTGTCGAGTCTGTATTGGAGATTGGACGTGTCTTCAATTGGAAGTGGCTAGTGGTGGTATTGCAAATTGCATGGAACCAGATTTGTTGTTGTTAGATGAGCCTACAAATCACCTTGATCTTGACACAATTGAGTGGCTTGAAGATTATCTTAACAAGCAGGATGTGCCGATGTATATTCTTTCAAAGGCGACTTGGATTGAAACACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAACAAACAAGAGAGTTGATAAGCAGGTTAGGTGCCGGAGCAAGTTCTGGCCGTGCTTCGACTGCTGAGAAGAAATTGGAAAGACTTCTTGGAGAGGAACTAGTAGAGAAGCCATTTGAACGGAAACAAATGAAAATCAGGTTCCCTGTGCGTGGAAGCAGTGGAAGATCTGTTGTAACAGTTAGGAACTTGGATTTTGGCTTTGAGGATAAAAAACTTTTCAACAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTCTTGGTCCAAATGGATGTGGCAAGAGTACTTTACTAAAATTGATTATGGGTTTAGAGAAGCCAATCAGCGGTGAAGTTATCCTTGGGGAGCATAATGTATTGCCTAACTATTTCGAGCAGAATCAGGCTGAGGCACTTGATCTGGAAAAGACGGTGCTTGAGACAGTAGAGGAAGCTGCCGAGGACTGGAGGAGTGACGATATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGATCGTAAAGTTTCTCTATTGAGTGGTGGTGAGAAGGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTACTTGTTTTGGATGAACCAACGAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAAATGAGTACGAGGGCACCGTTATCACCGTATCTCATGATCGGTACTTTATAAAGCAGATAGTTAATAGAGTGATTGAAGTTAAAGATGGCACTGTGCAGGATTATGCTGGAGATTACAATTATTATTTGGAGAAGAATCTTGATGCCAGGGAAAAAGAGCTTGAACGCCAGGCTGAGCTTGACGACAAAGCTCCTAAATTGAAAGCCAAATCCAAGATGTCAAAGGCTGAGAAAGAAGCAAGGAAGAAGCAAAAGATGCAGGCCTTTCAGCAAGCAAAACAGAAGTCTAAAGGTGCAAAGAATTCAAAGAGATGGAATTAA

Protein sequence

>MsG0380016762.01.T01

MRIIAGLEEPDSGNVIKAKPNMKIAFLSQEFEVSPSRTVREEFMSAFKEEMEVAGKLEKVQKALEGSVNDLELMGRLLDEFDLLQRRAQAVNLDVVDSKISKLMPELGFGVEDSDRLVASFSGGWQMRMCLGKILLQCRVCIGDWTCLQLEVASGGIANCMEPDLLLLDEPTNHLDLDTIEWLEDYLNKQDVPMYILSKATWIETQYAAWEKQQKEIEQTRELISRLGAGASSGRASTAEKKLERLLGEELVEKPFERKQMKIRFPVRGSSGRSVVTVRNLDFGFEDKKLFNKANLTIERGEKIAILGPNGCGKSTLLKLIMGLEKPISGEVILGEHNVLPNYFEQNQAEALDLEKTVLETVEEAAEDWRSDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYEGTVITVSHDRYFIKQIVNRVIEVKDGTVQDYAGDYNYYLEKNLDAREKELERQAELDDKAPKLKAKSKMSKAEKEARKKQKMQAFQQAKQKSKGAKNSKRWN*