Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030886.01.T01 | XP_003618625.1 | 55.639 | 133 | 13 | 1 | 4 | 136 | 31 | 117 | 1.12E-34 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030886.01.T01 | Q8LCS8 | 58.73 | 63 | 26 | 0 | 4 | 66 | 31 | 93 | 2.74E-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030886.01.T01 | G7KLT7 | 55.639 | 133 | 13 | 1 | 4 | 136 | 31 | 117 | 5.33e-35 | 127 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047869.01 | MsG0680030886.01 | 0.808396 | 3.161899e-50 | 1.805965e-47 |
| MsG0080047957.01 | MsG0680030886.01 | 0.803384 | 3.577034e-49 | 1.795004e-46 |
| MsG0080047959.01 | MsG0680030886.01 | 0.813166 | 2.936561e-51 | 1.903420e-48 |
| MsG0080048874.01 | MsG0680030886.01 | 0.806385 | 8.441499e-50 | 4.575443e-47 |
| MsG0180000065.01 | MsG0680030886.01 | 0.807636 | 4.589033e-50 | 2.569155e-47 |
| MsG0180000470.01 | MsG0680030886.01 | 0.849147 | 3.896853e-60 | 7.319755e-57 |
| MsG0180001663.01 | MsG0680030886.01 | 0.816322 | 5.872052e-52 | 4.147855e-49 |
| MsG0180002282.01 | MsG0680030886.01 | 0.809846 | 1.545921e-50 | 9.175415e-48 |
| MsG0180003669.01 | MsG0680030886.01 | 0.841670 | 4.127473e-58 | 6.108406e-55 |
| MsG0180003686.01 | MsG0680030886.01 | 0.800286 | 1.547742e-48 | 7.179111e-46 |
| MsG0180004157.01 | MsG0680030886.01 | 0.816871 | 4.423090e-52 | 3.171631e-49 |
| MsG0180004264.01 | MsG0680030886.01 | 0.802940 | 4.419034e-49 | 2.192463e-46 |
| MsG0180005974.01 | MsG0680030886.01 | 0.815670 | 8.207391e-52 | 5.694845e-49 |
| MsG0180006257.01 | MsG0680030886.01 | 0.813231 | 2.842656e-51 | 1.845804e-48 |
| MsG0280006324.01 | MsG0680030886.01 | 0.820384 | 7.058115e-53 | 5.576725e-50 |
| MsG0280010698.01 | MsG0680030886.01 | 0.821735 | 3.446515e-53 | 2.827458e-50 |
| MsG0280011032.01 | MsG0680030886.01 | 0.810658 | 1.033238e-50 | 6.264879e-48 |
| MsG0280011052.01 | MsG0680030886.01 | 0.806677 | 7.324355e-50 | 3.999616e-47 |
| MsG0380013176.01 | MsG0680030886.01 | 0.809222 | 2.104928e-50 | 1.228806e-47 |
| MsG0380014251.01 | MsG0680030886.01 | 0.804418 | 2.180793e-49 | 1.123812e-46 |
| MsG0380014573.01 | MsG0680030886.01 | 0.857148 | 1.987965e-62 | 4.859404e-59 |
| MsG0380014701.01 | MsG0680030886.01 | 0.801287 | 9.670025e-49 | 4.600503e-46 |
| MsG0680030800.01 | MsG0680030886.01 | 0.806803 | 6.888151e-50 | 3.773907e-47 |
| MsG0680030886.01 | MsG0680031114.01 | 0.805543 | 1.269159e-49 | 6.732385e-47 |
| MsG0680030886.01 | MsG0680031379.01 | 0.816673 | 4.899135e-52 | 3.493793e-49 |
| MsG0680030886.01 | MsG0680032157.01 | 0.844924 | 5.593851e-59 | 9.170066e-56 |
| MsG0680030886.01 | MsG0680033228.01 | 0.813369 | 2.650959e-51 | 1.727999e-48 |
| MsG0680030886.01 | MsG0680034565.01 | 0.804937 | 1.699556e-49 | 8.877191e-47 |
| MsG0680030886.01 | MsG0680035573.01 | 0.822071 | 2.881474e-53 | 2.386511e-50 |
| MsG0680030886.01 | MsG0680035666.01 | 0.802937 | 4.425423e-49 | 2.195479e-46 |
| MsG0680030886.01 | MsG0680035694.01 | 0.809497 | 1.837740e-50 | 1.080670e-47 |
| MsG0680030886.01 | MsG0680035828.01 | 0.811926 | 5.481707e-51 | 3.437203e-48 |
| MsG0680030886.01 | MsG0780036080.01 | 0.837950 | 3.841349e-57 | 5.069319e-54 |
| MsG0680030886.01 | MsG0780036201.01 | 0.803280 | 3.758291e-49 | 1.880928e-46 |
| MsG0680030886.01 | MsG0780037512.01 | 0.800956 | 1.129912e-48 | 5.331018e-46 |
| MsG0680030886.01 | MsG0780038386.01 | 0.845143 | 4.880681e-59 | 8.056344e-56 |
| MsG0680030886.01 | MsG0780038401.01 | 0.817199 | 3.732614e-52 | 2.700521e-49 |
| MsG0680030886.01 | MsG0780038439.01 | 0.817671 | 2.922285e-52 | 2.141822e-49 |
| MsG0680030886.01 | MsG0780039252.01 | 0.816096 | 6.593637e-52 | 4.628935e-49 |
| MsG0680030886.01 | MsG0780040576.01 | -0.809796 | 1.585106e-50 | 9.395826e-48 |
| MsG0680030886.01 | MsG0780040704.01 | 0.821304 | 4.336256e-53 | 3.514596e-50 |
| MsG0680030886.01 | MsG0780041456.01 | 0.806181 | 9.317957e-50 | 5.024743e-47 |
| MsG0680030886.01 | MsG0880042161.01 | 0.803920 | 2.768363e-49 | 1.408612e-46 |
| MsG0680030886.01 | MsG0880042966.01 | 0.800883 | 1.169450e-48 | 5.507323e-46 |
| MsG0680030886.01 | MsG0880043292.01 | 0.814391 | 1.577725e-51 | 1.057372e-48 |
| MsG0680030886.01 | MsG0880043591.01 | 0.810747 | 9.885086e-51 | 6.008070e-48 |
| MsG0680030886.01 | MsG0880044415.01 | 0.811830 | 5.754226e-51 | 3.598936e-48 |
| MsG0680030886.01 | MsG0880044574.01 | 0.817637 | 2.973707e-52 | 2.177432e-49 |
| MsG0680030886.01 | MsG0880045372.01 | 0.808747 | 2.660334e-50 | 1.533402e-47 |
| MsG0680030886.01 | MsG0880046531.01 | 0.804731 | 1.876149e-49 | 9.747814e-47 |
| MsG0480018778.01 | MsG0680030886.01 | 0.806537 | 7.839708e-50 | 4.265958e-47 |
| MsG0480018964.01 | MsG0680030886.01 | 0.800645 | 1.307965e-48 | 6.122304e-46 |
| MsG0480019329.01 | MsG0680030886.01 | 0.801085 | 1.063372e-48 | 5.033523e-46 |
| MsG0480019435.01 | MsG0680030886.01 | 0.814665 | 1.372061e-51 | 9.262750e-49 |
| MsG0480021536.01 | MsG0680030886.01 | 0.824848 | 6.461255e-54 | 5.791438e-51 |
| MsG0480021927.01 | MsG0680030886.01 | 0.801105 | 1.053431e-48 | 4.988994e-46 |
| MsG0480022068.01 | MsG0680030886.01 | 0.805387 | 1.368290e-49 | 7.229304e-47 |
| MsG0480022259.01 | MsG0680030886.01 | 0.819404 | 1.182346e-52 | 9.089667e-50 |
| MsG0480022262.01 | MsG0680030886.01 | 0.810460 | 1.140270e-50 | 6.877174e-48 |
| MsG0480023248.01 | MsG0680030886.01 | 0.813793 | 2.138620e-51 | 1.410090e-48 |
| MsG0480023654.01 | MsG0680030886.01 | 0.858855 | 6.186692e-63 | 1.601564e-59 |
| MsG0580024038.01 | MsG0680030886.01 | 0.806565 | 7.732088e-50 | 4.210464e-47 |
| MsG0580025022.01 | MsG0680030886.01 | 0.817884 | 2.615448e-52 | 1.928144e-49 |
| MsG0580025758.01 | MsG0680030886.01 | 0.832965 | 6.994373e-56 | 7.941716e-53 |
| MsG0580026002.01 | MsG0680030886.01 | 0.821922 | 3.121087e-53 | 2.574133e-50 |
| MsG0380015538.01 | MsG0680030886.01 | 0.801559 | 8.505596e-49 | 4.074273e-46 |
| MsG0380015720.01 | MsG0680030886.01 | 0.817724 | 2.843291e-52 | 2.086974e-49 |
| MsG0380016004.01 | MsG0680030886.01 | 0.800436 | 1.442576e-48 | 6.716743e-46 |
| MsG0380016064.01 | MsG0680030886.01 | 0.805273 | 1.445571e-49 | 7.615248e-47 |
| MsG0380016475.01 | MsG0680030886.01 | 0.826183 | 3.119917e-54 | 2.904795e-51 |
| MsG0380016910.01 | MsG0680030886.01 | 0.820696 | 5.983977e-53 | 4.768626e-50 |
| MsG0380017048.01 | MsG0680030886.01 | 0.801021 | 1.095817e-48 | 5.178850e-46 |
| MsG0380017323.01 | MsG0680030886.01 | 0.803108 | 4.080590e-49 | 2.033177e-46 |
| MsG0380017326.01 | MsG0680030886.01 | 0.821185 | 4.617949e-53 | 3.730836e-50 |
| MsG0380017543.01 | MsG0680030886.01 | 0.803140 | 4.017738e-49 | 2.003591e-46 |
| MsG0480018163.01 | MsG0680030886.01 | 0.811341 | 7.348807e-51 | 4.537044e-48 |
| MsG0480018318.01 | MsG0680030886.01 | 0.802186 | 6.323169e-49 | 3.077447e-46 |
| MsG0580027228.01 | MsG0680030886.01 | 0.818431 | 1.967122e-52 | 1.472274e-49 |
| MsG0580027688.01 | MsG0680030886.01 | 0.810756 | 9.840420e-51 | 5.982469e-48 |
| MsG0580027766.01 | MsG0680030886.01 | 0.814400 | 1.570465e-51 | 1.052737e-48 |
| MsG0580027833.01 | MsG0680030886.01 | 0.810475 | 1.131472e-50 | 6.827110e-48 |
| MsG0580027922.01 | MsG0680030886.01 | 0.807843 | 4.146831e-50 | 2.334142e-47 |
| MsG0580028527.01 | MsG0680030886.01 | 0.827666 | 1.378905e-54 | 1.340011e-51 |
| MsG0580029554.01 | MsG0680030886.01 | 0.834178 | 3.483776e-56 | 4.101582e-53 |
| MsG0680030316.01 | MsG0680030886.01 | 0.809682 | 1.676969e-50 | 9.910361e-48 |
| MsG0280007072.01 | MsG0680030886.01 | 0.814877 | 1.231354e-51 | 8.360406e-49 |
| MsG0280007311.01 | MsG0680030886.01 | 0.801046 | 1.083125e-48 | 5.122034e-46 |
| MsG0280007459.01 | MsG0680030886.01 | 0.809292 | 2.034144e-50 | 1.189677e-47 |
| MsG0280008073.01 | MsG0680030886.01 | 0.822559 | 2.220788e-53 | 1.865345e-50 |
| MsG0280008112.01 | MsG0680030886.01 | 0.806350 | 8.582792e-50 | 4.648035e-47 |
| MsG0280008615.01 | MsG0680030886.01 | 0.841714 | 4.018017e-58 | 5.954326e-55 |
| MsG0280009024.01 | MsG0680030886.01 | 0.827276 | 1.710794e-54 | 1.643893e-51 |
| MsG0280010443.01 | MsG0680030886.01 | 0.824843 | 6.480681e-54 | 5.807915e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030886.01.T01 | MTR_6g013820 | 55.639 | 133 | 13 | 1 | 4 | 136 | 31 | 117 | 1.35e-38 | 127 |
| MsG0680030886.01.T01 | MTR_7g012560 | 63.014 | 73 | 25 | 1 | 4 | 74 | 31 | 103 | 1.27e-23 | 88.6 |
| MsG0680030886.01.T01 | MTR_7g012560 | 61.972 | 71 | 25 | 1 | 4 | 72 | 31 | 101 | 6.12e-22 | 84.7 |
| MsG0680030886.01.T01 | MTR_7g027300 | 60.784 | 51 | 20 | 0 | 17 | 67 | 43 | 93 | 1.11e-13 | 63.5 |
| MsG0680030886.01.T01 | MTR_7g027017 | 51.562 | 64 | 31 | 0 | 4 | 67 | 30 | 93 | 1.04e-12 | 63.9 |
| MsG0680030886.01.T01 | MTR_8g096380 | 57.143 | 49 | 21 | 0 | 19 | 67 | 45 | 93 | 1.32e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030886.01.T01 | AT5G15460 | 58.730 | 63 | 26 | 0 | 4 | 66 | 31 | 93 | 2.79e-18 | 75.5 |
| MsG0680030886.01.T01 | AT5G15460 | 58.730 | 63 | 26 | 0 | 4 | 66 | 31 | 93 | 2.79e-18 | 75.5 |
| MsG0680030886.01.T01 | AT5G15460 | 58.730 | 63 | 26 | 0 | 4 | 66 | 31 | 93 | 2.79e-18 | 75.5 |
| MsG0680030886.01.T01 | AT3G01050 | 52.174 | 69 | 33 | 0 | 4 | 72 | 31 | 99 | 1.14e-17 | 73.6 |
| MsG0680030886.01.T01 | AT3G01050 | 52.174 | 69 | 33 | 0 | 4 | 72 | 31 | 99 | 1.14e-17 | 73.6 |
| MsG0680030886.01.T01 | AT3G01050 | 52.174 | 69 | 33 | 0 | 4 | 72 | 31 | 99 | 1.14e-17 | 73.6 |
| MsG0680030886.01.T01 | AT3G01050 | 52.174 | 69 | 33 | 0 | 4 | 72 | 31 | 99 | 1.14e-17 | 73.6 |
| MsG0680030886.01.T01 | AT3G01050 | 52.174 | 69 | 33 | 0 | 4 | 72 | 31 | 99 | 1.14e-17 | 73.6 |
| MsG0680030886.01.T01 | AT5G15460 | 70.833 | 48 | 14 | 0 | 19 | 66 | 20 | 67 | 5.20e-17 | 71.6 |
| MsG0680030886.01.T01 | AT1G22050 | 49.296 | 71 | 36 | 0 | 2 | 72 | 29 | 99 | 3.54e-16 | 70.1 |
| MsG0680030886.01.T01 | AT1G77870 | 46.575 | 73 | 37 | 1 | 2 | 72 | 28 | 100 | 1.39e-12 | 60.5 |
| MsG0680030886.01.T01 | AT3G26980 | 58.000 | 50 | 21 | 0 | 17 | 66 | 43 | 92 | 4.74e-12 | 59.3 |
| MsG0680030886.01.T01 | AT4G24990 | 60.000 | 45 | 18 | 0 | 23 | 67 | 49 | 93 | 6.18e-12 | 58.9 |
| MsG0680030886.01.T01 | AT4G24990 | 60.000 | 45 | 18 | 0 | 23 | 67 | 49 | 93 | 6.18e-12 | 58.9 |
Find 26 sgRNAs with CRISPR-Local
Find 37 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGTGCAACCACCTAATT+TGG | 0.215657 | 6:-11123669 | MsG0680030886.01.T01:CDS |
| AAAGAAATTTCCATTGTCTA+TGG | 0.289355 | 6:-11123265 | MsG0680030886.01.T01:three_prime_UTR |
| AAGAACGTGAGTTCGATTTC+TGG | 0.305977 | 6:+11123519 | None:intergenic |
| CACAAACCTTTGTCCAAATT+AGG | 0.314428 | 6:+11123656 | None:intergenic |
| TTCCTCATACACAAGTTCTT+TGG | 0.334891 | 6:-11123192 | MsG0680030886.01.T01:three_prime_UTR |
| CACATTCTGGTTGTTTCACA+TGG | 0.338531 | 6:-11123569 | MsG0680030886.01.T01:CDS |
| GATTTCTGGAGTCGCTCATT+TGG | 0.338875 | 6:+11123533 | None:intergenic |
| ATGTATGTGTTGGCACATTC+TGG | 0.357601 | 6:-11123582 | MsG0680030886.01.T01:CDS |
| ATTTCTGGAGTCGCTCATTT+GGG | 0.368591 | 6:+11123534 | None:intergenic |
| GACAAAGGTTTGTGTGTGTT+TGG | 0.373395 | 6:-11123647 | MsG0680030886.01.T01:CDS |
| AGTCCATTGTGTAATCTTCC+TGG | 0.429392 | 6:-11123713 | MsG0680030886.01.T01:CDS |
| AACCAAAGAACTTGTGTATG+AGG | 0.467564 | 6:+11123190 | None:intergenic |
| GATGTGAAGTTAATTTGTGC+TGG | 0.476748 | 6:-11123776 | MsG0680030886.01.T01:CDS |
| TCTGGTTGTTTCACATGGGT+CGG | 0.511095 | 6:-11123564 | MsG0680030886.01.T01:CDS |
| AAAATTGTGTGAAGAAACAC+TGG | 0.551532 | 6:+11123107 | None:intergenic |
| CAACCACCTAATTTGGACAA+AGG | 0.572921 | 6:-11123662 | MsG0680030886.01.T01:CDS |
| TCTGGAGTCGCTCATTTGGG+TGG | 0.577282 | 6:+11123537 | None:intergenic |
| ACATTCTGGTTGTTTCACAT+GGG | 0.580287 | 6:-11123568 | MsG0680030886.01.T01:CDS |
| AGCATTGTTGTAACTCCACC+AGG | 0.597774 | 6:+11123695 | None:intergenic |
| AAACCTTTGTCCAAATTAGG+TGG | 0.603121 | 6:+11123659 | None:intergenic |
| CCATTGTGTAATCTTCCTGG+TGG | 0.622842 | 6:-11123710 | MsG0680030886.01.T01:CDS |
| GTGACTTTAACCATAGACAA+TGG | 0.625666 | 6:+11123255 | None:intergenic |
| GGAGAACAACAAAACAGTAG+AGG | 0.643312 | 6:-11123744 | MsG0680030886.01.T01:CDS |
| ATGTGTTAAAATGTATGTGT+TGG | 0.644083 | 6:-11123592 | MsG0680030886.01.T01:CDS |
| TGGAGTTACAACAATGCTTG+TGG | 0.673028 | 6:-11123690 | MsG0680030886.01.T01:CDS |
| CCACCAGGAAGATTACACAA+TGG | 0.747125 | 6:+11123710 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAGTTCATATAGTTT+TGG | - | Chr6:11123440-11123459 | MsG0680030886.01.T01:intron | 15.0% |
| !!! | TTTTACATTGTAATAGTATA+AGG | + | Chr6:11123719-11123738 | None:intergenic | 15.0% |
| !! | ATGTAAAAAGTTATTGAGTT+TGG | - | Chr6:11123731-11123750 | MsG0680030886.01.T01:CDS | 20.0% |
| !!! | ATCATTTTTATCATTGTCTA+TGG | - | Chr6:11123652-11123671 | MsG0680030886.01.T01:CDS | 20.0% |
| !!! | TTTTAACACATTATAATTGC+AGG | + | Chr6:11123277-11123296 | None:intergenic | 20.0% |
| !!! | TTTTTTGAAGATAAAGAGTA+TGG | - | Chr6:11123063-11123082 | MsG0680030886.01.T01:three_prime_UTR | 20.0% |
| ! | AAAGAAATTTCCATTGTCTA+TGG | - | Chr6:11123613-11123632 | MsG0680030886.01.T01:CDS | 25.0% |
| ! | AATTTGTGCTGGAAAAATAT+TGG | - | Chr6:11123113-11123132 | MsG0680030886.01.T01:three_prime_UTR | 25.0% |
| ! | ATGTGTTAAAATGTATGTGT+TGG | - | Chr6:11123286-11123305 | MsG0680030886.01.T01:three_prime_UTR | 25.0% |
| !! | TTCACATCTTTTACAGTTTT+TGG | + | Chr6:11123090-11123109 | None:intergenic | 25.0% |
| !!! | TTTGATTCTCATTGATTTTC+TGG | - | Chr6:11123470-11123489 | MsG0680030886.01.T01:intron | 25.0% |
| AAAATTGTGTGAAGAAACAC+TGG | + | Chr6:11123774-11123793 | None:intergenic | 30.0% | |
| ! | GTGTGTGTTTGGTATTTTAT+TGG | - | Chr6:11123242-11123261 | MsG0680030886.01.T01:three_prime_UTR | 30.0% |
| AAACCTTTGTCCAAATTAGG+TGG | + | Chr6:11123222-11123241 | None:intergenic | 35.0% | |
| AAAGACATTGTTACGAGAGT+TGG | + | Chr6:11123407-11123426 | None:intergenic | 35.0% | |
| AACCAAAGAACTTGTGTATG+AGG | + | Chr6:11123691-11123710 | None:intergenic | 35.0% | |
| CACAAACCTTTGTCCAAATT+AGG | + | Chr6:11123225-11123244 | None:intergenic | 35.0% | |
| GTGACTTTAACCATAGACAA+TGG | + | Chr6:11123626-11123645 | None:intergenic | 35.0% | |
| TTCCTCATACACAAGTTCTT+TGG | - | Chr6:11123686-11123705 | MsG0680030886.01.T01:CDS | 35.0% | |
| ! | ACATTCTGGTTGTTTCACAT+GGG | - | Chr6:11123310-11123329 | MsG0680030886.01.T01:three_prime_UTR | 35.0% |
| !! | GATGTGAAGTTAATTTGTGC+TGG | - | Chr6:11123102-11123121 | MsG0680030886.01.T01:three_prime_UTR | 35.0% |
| AAGAACGTGAGTTCGATTTC+TGG | + | Chr6:11123362-11123381 | None:intergenic | 40.0% | |
| AGTCCATTGTGTAATCTTCC+TGG | - | Chr6:11123165-11123184 | MsG0680030886.01.T01:three_prime_UTR | 40.0% | |
| CAACCACCTAATTTGGACAA+AGG | - | Chr6:11123216-11123235 | MsG0680030886.01.T01:three_prime_UTR | 40.0% | |
| GACAAAGGTTTGTGTGTGTT+TGG | - | Chr6:11123231-11123250 | MsG0680030886.01.T01:three_prime_UTR | 40.0% | |
| GGAGAACAACAAAACAGTAG+AGG | - | Chr6:11123134-11123153 | MsG0680030886.01.T01:three_prime_UTR | 40.0% | |
| TGGAGTTACAACAATGCTTG+TGG | - | Chr6:11123188-11123207 | MsG0680030886.01.T01:three_prime_UTR | 40.0% | |
| ! | ATGTATGTGTTGGCACATTC+TGG | - | Chr6:11123296-11123315 | MsG0680030886.01.T01:three_prime_UTR | 40.0% |
| ! | CACATTCTGGTTGTTTCACA+TGG | - | Chr6:11123309-11123328 | MsG0680030886.01.T01:three_prime_UTR | 40.0% |
| !! | ATTTCTGGAGTCGCTCATTT+GGG | + | Chr6:11123347-11123366 | None:intergenic | 40.0% |
| AGCATTGTTGTAACTCCACC+AGG | + | Chr6:11123186-11123205 | None:intergenic | 45.0% | |
| CCACCAGGAAGATTACACAA+TGG | + | Chr6:11123171-11123190 | None:intergenic | 45.0% | |
| CCATTGTGTAATCTTCCTGG+TGG | - | Chr6:11123168-11123187 | MsG0680030886.01.T01:three_prime_UTR | 45.0% | |
| GGTTGTGCAACCACCTAATT+TGG | - | Chr6:11123209-11123228 | MsG0680030886.01.T01:three_prime_UTR | 45.0% | |
| ! | TCTGGTTGTTTCACATGGGT+CGG | - | Chr6:11123314-11123333 | MsG0680030886.01.T01:exon | 45.0% |
| !! | GATTTCTGGAGTCGCTCATT+TGG | + | Chr6:11123348-11123367 | None:intergenic | 45.0% |
| ! | TCTGGAGTCGCTCATTTGGG+TGG | + | Chr6:11123344-11123363 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 11123021 | 11123879 | 11123021 | ID=MsG0680030886.01;Name=MsG0680030886.01 |
| Chr6 | mRNA | 11123021 | 11123879 | 11123021 | ID=MsG0680030886.01.T01;Parent=MsG0680030886.01;Name=MsG0680030886.01.T01;_AED=0.49;_eAED=0.54;_QI=0|0|0.5|1|0|0|2|312|136 |
| Chr6 | exon | 11123021 | 11123388 | 11123021 | ID=MsG0680030886.01.T01:exon:8266;Parent=MsG0680030886.01.T01 |
| Chr6 | exon | 11123525 | 11123879 | 11123525 | ID=MsG0680030886.01.T01:exon:8265;Parent=MsG0680030886.01.T01 |
| Chr6 | CDS | 11123525 | 11123879 | 11123525 | ID=MsG0680030886.01.T01:cds;Parent=MsG0680030886.01.T01 |
| Chr6 | CDS | 11123333 | 11123388 | 11123333 | ID=MsG0680030886.01.T01:cds;Parent=MsG0680030886.01.T01 |
| Chr6 | three_prime_UTR | 11123021 | 11123332 | 11123021 | ID=MsG0680030886.01.T01:three_prime_utr;Parent=MsG0680030886.01.T01 |
| Gene Sequence |
| Protein sequence |
