AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017023.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017023.01.T01 MTR_3g099500 67.797 236 15 5 83 271 479 700 6.78e-94 294
MsG0380017023.01.T01 MTR_3g099500 67.797 236 15 5 83 271 462 683 7.07e-94 293
MsG0380017023.01.T01 MTR_8g101490 36.797 231 84 6 85 268 457 672 3.33e-34 131
MsG0380017023.01.T01 MTR_8g101490 38.021 192 57 6 85 229 457 633 1.17e-25 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017023.01.T01 AT4G09020 58.051 236 38 5 83 271 449 670 1.58e-79 256
MsG0380017023.01.T01 AT2G39930 36.364 231 85 5 85 268 452 667 2.09e-34 132
MsG0380017023.01.T01 AT2G39930 37.104 221 77 5 85 258 452 657 1.89e-33 129
MsG0380017023.01.T01 AT2G39930 37.857 140 50 4 85 202 452 576 2.06e-16 79.7

Find 62 sgRNAs with CRISPR-Local

Find 440 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCATTTGTTTGTCTTTC+AGG 0.005350 3:+90804292 MsG0380017023.01.T01:CDS
GCAATTTATTCATAAATTTA+AGG 0.147639 3:-90800763 None:intergenic
AGCTTTGCAACTCGTGTTTC+TGG 0.153163 3:+90803410 MsG0380017023.01.T01:CDS
GGCACTCAGCATCGTAGTTC+TGG 0.230626 3:-90800711 None:intergenic
CACATGTCCTAGGGTGATTC+TGG 0.269164 3:+90803377 MsG0380017023.01.T01:intron
CAAGGAAGGGCGATCACTTT+AGG 0.274375 3:+90807049 MsG0380017023.01.T01:CDS
TGTTATTTCCGTAGCGAGTA+TGG 0.279104 3:-90806899 None:intergenic
CAATTTATTCATAAATTTAA+GGG 0.332465 3:-90800762 None:intergenic
TACTACTTGGTTTCATGACT+TGG 0.366016 3:-90800733 None:intergenic
GGAAAACTTTGCAATTGGTT+TGG 0.371448 3:-90800689 None:intergenic
GGGAACACCGATGATGCTAA+TGG 0.391733 3:+90806863 MsG0380017023.01.T01:intron
TTCTGGGAAAACTTTGCAAT+TGG 0.395726 3:-90800694 None:intergenic
GATGCAATGATAACTTTAGT+TGG 0.408830 3:+90804512 MsG0380017023.01.T01:CDS
GATGAGGGGAGGAGCATTGA+GGG 0.412056 3:-90801550 None:intergenic
TAAAATTATTGCAGAGCCTT+GGG 0.413250 3:+90802459 MsG0380017023.01.T01:CDS
AAAAGTATTACCGTCCAATT+CGG 0.415818 3:-90802514 None:intergenic
TGTAGCACAACGAAGCTAAT+GGG 0.415926 3:+90804475 MsG0380017023.01.T01:intron
GGAACACCGATGATGCTAAT+GGG 0.432770 3:+90806864 MsG0380017023.01.T01:CDS
TTAAGGGAATGCATACTACT+TGG 0.451340 3:-90800746 None:intergenic
TCAATGCTCCTCCCCTCATC+AGG 0.457167 3:+90801553 MsG0380017023.01.T01:CDS
TCTTGTTTCATACAACTTCA+AGG 0.458629 3:+90804382 MsG0380017023.01.T01:CDS
GTAAAATTATTGCAGAGCCT+TGG 0.459216 3:+90802458 MsG0380017023.01.T01:CDS
TGAGGGGAGGAGCATTGAGG+GGG 0.464609 3:-90801548 None:intergenic
TACGGAAATAACAATAGCTA+TGG 0.465711 3:+90806909 MsG0380017023.01.T01:CDS
CTAGGGTGATTCTGGTATGA+AGG 0.470733 3:+90803385 MsG0380017023.01.T01:intron
GCACTCAGCATCGTAGTTCT+GGG 0.486829 3:-90800710 None:intergenic
TGTGGAGGTCTATATCTTGT+TGG 0.496751 3:+90802484 MsG0380017023.01.T01:CDS
GATAACTTTAGTTGGAATTG+TGG 0.498203 3:+90804520 MsG0380017023.01.T01:CDS
ACTACTTGGTTTCATGACTT+GGG 0.513053 3:-90800732 None:intergenic
GAGGGGAGGAGCATTGAGGG+GGG 0.513118 3:-90801547 None:intergenic
TCAATAGTTGGATGCAAGGA+AGG 0.517959 3:+90807035 MsG0380017023.01.T01:intron
CATATATTTATTACCTGATG+AGG 0.522683 3:-90801566 None:intergenic
CCTGAAAGACAAACAAATGA+AGG 0.527005 3:-90804292 None:intergenic
TCTCCAATGCGATAAAGTAC+CGG 0.534057 3:+90807076 MsG0380017023.01.T01:CDS
ATGAGGGGAGGAGCATTGAG+GGG 0.535884 3:-90801549 None:intergenic
CTAATGGGAAGGTGGAATGA+TGG 0.542792 3:+90804490 MsG0380017023.01.T01:CDS
TAGGGTGATTCTGGTATGAA+GGG 0.552990 3:+90803386 MsG0380017023.01.T01:intron
TTGTTCAATAGTTGGATGCA+AGG 0.561289 3:+90807031 MsG0380017023.01.T01:intron
ATATAGTTATAATCAACAGT+AGG 0.562356 3:+90801593 MsG0380017023.01.T01:CDS
ATGCCGGTACTTTATCGCAT+TGG 0.570122 3:-90807079 None:intergenic
ATATATTTATTACCTGATGA+GGG 0.572482 3:-90801565 None:intergenic
TGATGAGGGGAGGAGCATTG+AGG 0.574389 3:-90801551 None:intergenic
GAATATGGCCATACTCGCTA+CGG 0.579593 3:+90806891 MsG0380017023.01.T01:CDS
ATTGCAGAGCCTTGGGACTG+TGG 0.586596 3:+90802466 MsG0380017023.01.T01:CDS
ATACTGTGTCGAGGAACTGA+TGG 0.587782 3:+90801522 MsG0380017023.01.T01:CDS
TATAGTTATAATCAACAGTA+GGG 0.591708 3:+90801594 MsG0380017023.01.T01:CDS
GCAGAGCCTTGGGACTGTGG+AGG 0.605251 3:+90802469 MsG0380017023.01.T01:CDS
CAATAGTTGGATGCAAGGAA+GGG 0.613913 3:+90807036 MsG0380017023.01.T01:intron
ACGGAAATAACAATAGCTAT+GGG 0.614490 3:+90806910 MsG0380017023.01.T01:CDS
GAACACCGATGATGCTAATG+GGG 0.616909 3:+90806865 MsG0380017023.01.T01:CDS
ATTTATTACCTGATGAGGGG+AGG 0.617301 3:-90801561 None:intergenic
GTCACTGAGTATCATGTGGA+CGG 0.618052 3:+90801477 MsG0380017023.01.T01:CDS
GAACAGCGTAGACCATATCA+TGG 0.619409 3:+90804316 MsG0380017023.01.T01:CDS
CAACGAAGCTAATGGGAAGG+TGG 0.621655 3:+90804482 MsG0380017023.01.T01:intron
TATATTTATTACCTGATGAG+GGG 0.623499 3:-90801564 None:intergenic
TATAGACCTCCACAGTCCCA+AGG 0.643542 3:-90802475 None:intergenic
CTCGCAAGTATACTGTGTCG+AGG 0.655283 3:+90801513 MsG0380017023.01.T01:CDS
TTTATGAATAAATTGCAAAG+CGG 0.656475 3:+90800770 MsG0380017023.01.T01:CDS
AGGGTGATTCTGGTATGAAG+GGG 0.656811 3:+90803387 MsG0380017023.01.T01:intron
GCACAACGAAGCTAATGGGA+AGG 0.658034 3:+90804479 MsG0380017023.01.T01:intron
TAGGGTCACTGAGTATCATG+TGG 0.663262 3:+90801473 MsG0380017023.01.T01:intron
AACACCGATGATGCTAATGG+GGG 0.689567 3:+90806866 MsG0380017023.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATTTATTCATAAATTTAA+GGG - Chr3:90800765-90800784 None:intergenic 10.0%
!!! ATTTTTTATCTTATTATTCA+AGG + Chr3:90805778-90805797 MsG0380017023.01.T01:intron 10.0%
!! AAATAACATGATTATTAATG+AGG - Chr3:90802741-90802760 None:intergenic 15.0%
!! AATAACATGATTATTAATGA+GGG - Chr3:90802740-90802759 None:intergenic 15.0%
!! AGAAAACTTTAATTGAAATA+TGG + Chr3:90806478-90806497 MsG0380017023.01.T01:intron 15.0%
!! AGTCATGTTTAAAAAAAAAA+GGG + Chr3:90802550-90802569 MsG0380017023.01.T01:intron 15.0%
!! ATATACAATTTACAATAAGA+TGG + Chr3:90803203-90803222 MsG0380017023.01.T01:intron 15.0%
!! GCAATTTATTCATAAATTTA+AGG - Chr3:90800766-90800785 None:intergenic 15.0%
!! GTTAAAGTATAGATATATAT+AGG - Chr3:90806059-90806078 None:intergenic 15.0%
!! TAGTCATGTTTAAAAAAAAA+AGG + Chr3:90802549-90802568 MsG0380017023.01.T01:intron 15.0%
!! TATATTACTAAGTAATTCAA+TGG - Chr3:90803028-90803047 None:intergenic 15.0%
!! TCTAAAAAATAACTTAACAA+TGG - Chr3:90802074-90802093 None:intergenic 15.0%
!!! TATAAAATAGTTTTTAACAG+TGG + Chr3:90804262-90804281 MsG0380017023.01.T01:intron 15.0%
!!! TTTTGATATACAATTCAAAA+TGG - Chr3:90804428-90804447 None:intergenic 15.0%
!! AACTATTAAAATTGTACACT+AGG - Chr3:90805813-90805832 None:intergenic 20.0%
!! AACTATTGAACAAAAAGATT+AGG - Chr3:90807024-90807043 None:intergenic 20.0%
!! AATACAACACTTCAAAAATT+CGG + Chr3:90801780-90801799 MsG0380017023.01.T01:intron 20.0%
!! AATTTATCAAGGTAATTCTA+AGG + Chr3:90803123-90803142 MsG0380017023.01.T01:intron 20.0%
!! AGATATGTAATTTAATGATC+TGG + Chr3:90803151-90803170 MsG0380017023.01.T01:intron 20.0%
!! ATAACATGATTATTAATGAG+GGG - Chr3:90802739-90802758 None:intergenic 20.0%
!! ATATAATTACACTCAATGAA+AGG - Chr3:90805494-90805513 None:intergenic 20.0%
!! ATATAGTTATAATCAACAGT+AGG + Chr3:90801593-90801612 MsG0380017023.01.T01:CDS 20.0%
!! ATATATTTATTACCTGATGA+GGG - Chr3:90801568-90801587 None:intergenic 20.0%
!! ATCTAAAAATTGTATAGTGA+TGG - Chr3:90802308-90802327 None:intergenic 20.0%
!! ATTTATCAAGGTAATTCTAA+GGG + Chr3:90803124-90803143 MsG0380017023.01.T01:intron 20.0%
!! ATTTCTTCAACTATCAATTT+CGG - Chr3:90805743-90805762 None:intergenic 20.0%
!! CAAAAATTAATACCATGATA+TGG - Chr3:90804331-90804350 None:intergenic 20.0%
!! CAAAAGTAATTACATATTTG+TGG - Chr3:90803668-90803687 None:intergenic 20.0%
!! CAAATCATGTTAAAACAATA+TGG + Chr3:90801732-90801751 MsG0380017023.01.T01:intron 20.0%
!! CTTAACAAATAATTAAACGT+GGG - Chr3:90806133-90806152 None:intergenic 20.0%
!! GATAAATAAATCAATTGATG+CGG - Chr3:90803088-90803107 None:intergenic 20.0%
!! TAACAATCAATTTCAGTAAA+AGG - Chr3:90806172-90806191 None:intergenic 20.0%
!! TAATGTTTGACTATCTTTAA+TGG + Chr3:90801312-90801331 MsG0380017023.01.T01:intron 20.0%
!! TATAGTTATAATCAACAGTA+GGG + Chr3:90801594-90801613 MsG0380017023.01.T01:CDS 20.0%
!! TTATTTATCGTGATGATATA+CGG + Chr3:90803099-90803118 MsG0380017023.01.T01:intron 20.0%
!! TTGATACATATACTGAAATT+TGG - Chr3:90800909-90800928 None:intergenic 20.0%
!! TTTATAAAGCCATCTAATTA+AGG + Chr3:90803879-90803898 MsG0380017023.01.T01:intron 20.0%
!! TTTATGAATAAATTGCAAAG+CGG + Chr3:90800770-90800789 MsG0380017023.01.T01:CDS 20.0%
!!! AACTAGTTTAATATAGCTTA+TGG + Chr3:90804102-90804121 MsG0380017023.01.T01:intron 20.0%
!!! CATCTATATCTATTTTTTGT+TGG + Chr3:90805348-90805367 MsG0380017023.01.T01:intron 20.0%
!!! GAATAATCTTGATAGTATAA+AGG + Chr3:90802839-90802858 MsG0380017023.01.T01:intron 20.0%
!!! GATTTTCATTTCACTTTATT+CGG + Chr3:90804236-90804255 MsG0380017023.01.T01:intron 20.0%
!!! GTATTTTTTCATTCTTATCT+CGG - Chr3:90802959-90802978 None:intergenic 20.0%
!!! TAATCTTTTTGTTCAATAGT+TGG + Chr3:90807023-90807042 MsG0380017023.01.T01:intron 20.0%
!!! TAGTTGATATTTGATTTTTG+CGG + Chr3:90802866-90802885 MsG0380017023.01.T01:intron 20.0%
!!! TTAACTTTATTTACTTTCAC+AGG + Chr3:90802405-90802424 MsG0380017023.01.T01:intron 20.0%
!!! TTCATATTTGAAGTTCATTT+TGG + Chr3:90806289-90806308 MsG0380017023.01.T01:intron 20.0%
!!! TTTATCTTTCTGTTGAATTT+TGG - Chr3:90806508-90806527 None:intergenic 20.0%
!!! TTTCTTTTAATTGATTCTGT+AGG + Chr3:90804717-90804736 MsG0380017023.01.T01:intron 20.0%
!!! TTTTGGTTTCATTTATTGTA+GGG + Chr3:90801455-90801474 MsG0380017023.01.T01:intron 20.0%
!!! TTTTTGGTTTCATTTATTGT+AGG + Chr3:90801454-90801473 MsG0380017023.01.T01:intron 20.0%
!!! TTTTTTCTTTTGGTCTTTAT+GGG + Chr3:90804067-90804086 MsG0380017023.01.T01:intron 20.0%
! AATTAGTATAAATGACTCAC+AGG - Chr3:90801244-90801263 None:intergenic 25.0%
! ACTAAGTCAGTAATCAATAA+AGG + Chr3:90801264-90801283 MsG0380017023.01.T01:intron 25.0%
! AGTAGAAAATTTAATGCTAC+TGG + Chr3:90806615-90806634 MsG0380017023.01.T01:intron 25.0%
! ATAAGAAGCCATCATAATTT+AGG + Chr3:90803714-90803733 MsG0380017023.01.T01:intron 25.0%
! ATAGATATATATAGGTTCCA+AGG - Chr3:90806051-90806070 None:intergenic 25.0%
! ATCCCACAAGAAAAAATTAA+TGG - Chr3:90806946-90806965 None:intergenic 25.0%
! ATTAGGTAAATTCCACAAAA+TGG - Chr3:90801083-90801102 None:intergenic 25.0%
! CATATATTTATTACCTGATG+AGG - Chr3:90801569-90801588 None:intergenic 25.0%
! CATTTATAATTGATGAGCTA+AGG + Chr3:90801622-90801641 MsG0380017023.01.T01:intron 25.0%
! CCTTAACAAATAATTAAACG+TGG - Chr3:90806134-90806153 None:intergenic 25.0%
! CTATTAATGTGTTGAAGTTA+TGG + Chr3:90804194-90804213 MsG0380017023.01.T01:intron 25.0%
! CTGCAATGTAGTTAAAAAAA+AGG - Chr3:90806690-90806709 None:intergenic 25.0%
! GATATACAATTCAAAATGGA+AGG - Chr3:90804424-90804443 None:intergenic 25.0%
! GTAGAAAATTTAATGCTACT+GGG + Chr3:90806616-90806635 MsG0380017023.01.T01:intron 25.0%
! TAAATTTATAACATCCCTCT+TGG + Chr3:90806970-90806989 MsG0380017023.01.T01:intron 25.0%
! TAACATGATTATTAATGAGG+GGG - Chr3:90802738-90802757 None:intergenic 25.0%
! TACATATACTGAAATTTGGT+TGG - Chr3:90800905-90800924 None:intergenic 25.0%
! TAGAAAATTTAATGCTACTG+GGG + Chr3:90806617-90806636 MsG0380017023.01.T01:intron 25.0%
! TATAGAAGATGTGTCTAAAT+TGG + Chr3:90805168-90805187 MsG0380017023.01.T01:intron 25.0%
! TATATTTATTACCTGATGAG+GGG - Chr3:90801567-90801586 None:intergenic 25.0%
! TGATATACGGAAATTTATCA+AGG + Chr3:90803112-90803131 MsG0380017023.01.T01:intron 25.0%
! TGTATGATAAACTATTGTCT+TGG - Chr3:90803639-90803658 None:intergenic 25.0%
! TTGAGTGTAATTATATGTGT+CGG + Chr3:90805498-90805517 MsG0380017023.01.T01:intron 25.0%
! TTTAAGTAGTGCTTTCTATA+TGG + Chr3:90804863-90804882 MsG0380017023.01.T01:intron 25.0%
!! AATTGATTCTGTAGGAAAAT+AGG + Chr3:90804634-90804653 MsG0380017023.01.T01:intron 25.0%
!! ATCAGTTTGGTTCATTTATT+TGG + Chr3:90801704-90801723 MsG0380017023.01.T01:intron 25.0%
!! ATCATAGTTGTATTTTCTGT+CGG - Chr3:90806102-90806121 None:intergenic 25.0%
!! ATTGATTCTGTAGGAAAATT+AGG + Chr3:90804726-90804745 MsG0380017023.01.T01:intron 25.0%
!! CCACGTTTAATTATTTGTTA+AGG + Chr3:90806131-90806150 MsG0380017023.01.T01:intron 25.0%
!! GTTAAAACAATATGGATTGT+TGG + Chr3:90801740-90801759 MsG0380017023.01.T01:intron 25.0%
!! TCAGTTTGGTTCATTTATTT+GGG + Chr3:90801705-90801724 MsG0380017023.01.T01:intron 25.0%
!! TTTCTTCTAATTGATTCTGT+AGG + Chr3:90804626-90804645 MsG0380017023.01.T01:intron 25.0%
!!! AAATTTTGTTATGATTGACC+AGG + Chr3:90806842-90806861 MsG0380017023.01.T01:intron 25.0%
!!! AATTTTGTTATGATTGACCA+GGG + Chr3:90806843-90806862 MsG0380017023.01.T01:intron 25.0%
!!! ACTGAACCCTATTTTTATAT+CGG - Chr3:90802051-90802070 None:intergenic 25.0%
!!! ACTTGAGTCGTTTTTATAAT+TGG - Chr3:90805464-90805483 None:intergenic 25.0%
!!! CTTCAAGTTTTCTTTTGAAA+AGG - Chr3:90806759-90806778 None:intergenic 25.0%
!!! GAAGTACTATTTTGTGTTTT+TGG + Chr3:90801438-90801457 MsG0380017023.01.T01:intron 25.0%
!!! GTTTTTTCTTTTGGTCTTTA+TGG + Chr3:90804066-90804085 MsG0380017023.01.T01:intron 25.0%
!!! TGATCTTGAGTTTTTTCTTT+TGG + Chr3:90804057-90804076 MsG0380017023.01.T01:intron 25.0%
!!! TGCCATTAATTTTTTCTTGT+GGG + Chr3:90806941-90806960 MsG0380017023.01.T01:CDS 25.0%
!!! TGTAAATGTTCTAGAATAGT+CGG - Chr3:90805936-90805955 None:intergenic 25.0%
!!! TTGCAATGCTTTATTTACAA+TGG + Chr3:90804657-90804676 MsG0380017023.01.T01:intron 25.0%
!!! TTTTAACTACATTGCAGTTT+AGG + Chr3:90806693-90806712 MsG0380017023.01.T01:intron 25.0%
AAATAATTAAACGTGGGTGA+AGG - Chr3:90806127-90806146 None:intergenic 30.0%
AAATCTTACGCATCATGATA+TGG + Chr3:90802779-90802798 MsG0380017023.01.T01:intron 30.0%
AAATTCCACAAAATGGATCA+AGG - Chr3:90801076-90801095 None:intergenic 30.0%
AACCTACCCGATATAAAAAT+AGG + Chr3:90802041-90802060 MsG0380017023.01.T01:intron 30.0%
AACCTTGATTCCTTTAGTTA+GGG + Chr3:90802107-90802126 MsG0380017023.01.T01:intron 30.0%
AAGTTCATTTCCATTCACAA+AGG + Chr3:90805428-90805447 MsG0380017023.01.T01:intron 30.0%
AATCCAAACAAATAACAGAG+AGG + Chr3:90801929-90801948 MsG0380017023.01.T01:intron 30.0%
ACAATTCAATGTATTTCCTG+AGG - Chr3:90800967-90800986 None:intergenic 30.0%
ACCTACCCGATATAAAAATA+GGG + Chr3:90802042-90802061 MsG0380017023.01.T01:intron 30.0%
ACGGAAATAACAATAGCTAT+GGG + Chr3:90806910-90806929 MsG0380017023.01.T01:CDS 30.0%
ACTTCAACACATTAATAGAG+TGG - Chr3:90804192-90804211 None:intergenic 30.0%
AGAAAATTTAATGCTACTGG+GGG + Chr3:90806618-90806637 MsG0380017023.01.T01:intron 30.0%
AGAACAAAAAAGCTGGTATT+AGG - Chr3:90801100-90801119 None:intergenic 30.0%
ATAAAGCCATCTAATTAAGG+TGG + Chr3:90803882-90803901 MsG0380017023.01.T01:intron 30.0%
ATATACTGAAATTTGGTTGG+AGG - Chr3:90800902-90800921 None:intergenic 30.0%
ATCTTAGATGTTGTGGTAAT+TGG + Chr3:90801847-90801866 MsG0380017023.01.T01:intron 30.0%
ATTTCTCACTGCTAGAAAAT+TGG + Chr3:90802354-90802373 MsG0380017023.01.T01:intron 30.0%
CAAAATGGAAGGACAAAATT+TGG - Chr3:90804413-90804432 None:intergenic 30.0%
CAGAACAACCTAAATTATGA+TGG - Chr3:90803725-90803744 None:intergenic 30.0%
CTACAAAAGAACAAAAAAGC+TGG - Chr3:90801107-90801126 None:intergenic 30.0%
GAATTGAATTGTGATGCAAT+TGG + Chr3:90801356-90801375 MsG0380017023.01.T01:intron 30.0%
GAGGTTAAATATCTGGTTAA+TGG + Chr3:90801948-90801967 MsG0380017023.01.T01:intron 30.0%
GATAACTTTAGTTGGAATTG+TGG + Chr3:90804520-90804539 MsG0380017023.01.T01:CDS 30.0%
GATGCAATGATAACTTTAGT+TGG + Chr3:90804512-90804531 MsG0380017023.01.T01:CDS 30.0%
GCCAAAACGTAATTAACATT+GGG - Chr3:90803837-90803856 None:intergenic 30.0%
GCTACATTAAAGTCTAATCT+TGG - Chr3:90804837-90804856 None:intergenic 30.0%
GTTTGTATATCACATAGACT+TGG + Chr3:90801126-90801145 MsG0380017023.01.T01:intron 30.0%
TAAAATTATTGCAGAGCCTT+GGG + Chr3:90802459-90802478 MsG0380017023.01.T01:CDS 30.0%
TAAACACACAACAAAAACGA+AGG - Chr3:90802914-90802933 None:intergenic 30.0%
TAAAGTCTAATCTTGGATCA+AGG - Chr3:90804830-90804849 None:intergenic 30.0%
TAACAGAGAGGTTAAATATC+TGG + Chr3:90801941-90801960 MsG0380017023.01.T01:intron 30.0%
TAACCTTGATTCCTTTAGTT+AGG + Chr3:90802106-90802125 MsG0380017023.01.T01:intron 30.0%
TAACTGAATGTAACAGATTC+TGG + Chr3:90805867-90805886 MsG0380017023.01.T01:intron 30.0%
TACGGAAATAACAATAGCTA+TGG + Chr3:90806909-90806928 MsG0380017023.01.T01:CDS 30.0%
TATAAATGACTCACAGGAAA+GGG - Chr3:90801238-90801257 None:intergenic 30.0%
TCTAGCATTAATGATATCTC+AGG + Chr3:90806266-90806285 MsG0380017023.01.T01:intron 30.0%
TGATATGAGTGTTATCAGTT+TGG + Chr3:90801691-90801710 MsG0380017023.01.T01:intron 30.0%
TGCCAAAACGTAATTAACAT+TGG - Chr3:90803838-90803857 None:intergenic 30.0%
TGTCAAGGTTCAAAGTTTAA+TGG + Chr3:90806646-90806665 MsG0380017023.01.T01:intron 30.0%
TTATGATAACCCTATTGTCT+TGG - Chr3:90803807-90803826 None:intergenic 30.0%
TTCAACGAAAATCATGATGT+TGG - Chr3:90801405-90801424 None:intergenic 30.0%
TTCTTTCTCATCTTAATTGC+TGG + Chr3:90806565-90806584 MsG0380017023.01.T01:intron 30.0%
TTTAAAAAAAAAAGGGCAGC+CGG + Chr3:90802557-90802576 MsG0380017023.01.T01:intron 30.0%
TTTCTCACTGCTAGAAAATT+GGG + Chr3:90802355-90802374 MsG0380017023.01.T01:intron 30.0%
TTTGAAGGCAAAGGAAAATA+CGG + Chr3:90805139-90805158 MsG0380017023.01.T01:intron 30.0%
! AATCATGATGTTGGTTAGTT+TGG - Chr3:90801396-90801415 None:intergenic 30.0%
! ACCCAATGTTAATTACGTTT+TGG + Chr3:90803833-90803852 MsG0380017023.01.T01:intron 30.0%
! ATATACCTTGATCCATTTTG+TGG + Chr3:90801068-90801087 MsG0380017023.01.T01:intron 30.0%
! CACTAAGCAGTTTTTATATG+CGG - Chr3:90805966-90805985 None:intergenic 30.0%
! CATGTTTAATTTCCAGAATG+CGG + Chr3:90806024-90806043 MsG0380017023.01.T01:intron 30.0%
! CTTCAGAATTTGTAGTTTTC+TGG + Chr3:90801151-90801170 MsG0380017023.01.T01:intron 30.0%
! TAACCTCTCTGTTATTTGTT+TGG - Chr3:90801935-90801954 None:intergenic 30.0%
! TCATGAAAATTTTCTCAGTG+AGG + Chr3:90807119-90807138 MsG0380017023.01.T01:CDS 30.0%
! TCTGTTTTATAGCAACATGA+TGG + Chr3:90804148-90804167 MsG0380017023.01.T01:intron 30.0%
! TCTTGTTTCATACAACTTCA+AGG + Chr3:90804382-90804401 MsG0380017023.01.T01:CDS 30.0%
!! AAAAGTATTACCGTCCAATT+CGG - Chr3:90802517-90802536 None:intergenic 30.0%
!! AAACTGATTTGTTATCTGCT+AGG + Chr3:90803305-90803324 MsG0380017023.01.T01:intron 30.0%
!! ATCACTGATTTCTCTGATAA+GGG - Chr3:90804767-90804786 None:intergenic 30.0%
!! ATTGTTAGGCTGATTTTTGA+AGG + Chr3:90805124-90805143 MsG0380017023.01.T01:intron 30.0%
!! ATTTACTCACTTTTGCTATG+AGG - Chr3:90806456-90806475 None:intergenic 30.0%
!! TATCACTGATTTCTCTGATA+AGG - Chr3:90804768-90804787 None:intergenic 30.0%
!! TGCAATGCTTTATTTACGAT+GGG + Chr3:90804564-90804583 MsG0380017023.01.T01:intron 30.0%
!! TTGCAATGCTTTATTTACGA+TGG + Chr3:90804563-90804582 MsG0380017023.01.T01:intron 30.0%
!!! CTGAACCCTATTTTTATATC+GGG - Chr3:90802050-90802069 None:intergenic 30.0%
!!! CTGCCATTAATTTTTTCTTG+TGG + Chr3:90806940-90806959 MsG0380017023.01.T01:CDS 30.0%
!!! TAATTTTTTCTTGTGGGATC+AGG + Chr3:90806947-90806966 MsG0380017023.01.T01:CDS 30.0%
!!! TCTTATTTTTAGTGATGCGA+TGG - Chr3:90803974-90803993 None:intergenic 30.0%
AAGAGCTAAGATACCACTTT+CGG + Chr3:90801664-90801683 MsG0380017023.01.T01:intron 35.0%
AAGTTGTGTCCCAATCAATA+TGG + Chr3:90803256-90803275 MsG0380017023.01.T01:intron 35.0%
ACTAACTATGCCAAGACAAT+AGG + Chr3:90803794-90803813 MsG0380017023.01.T01:intron 35.0%
ACTACTTGGTTTCATGACTT+GGG - Chr3:90800735-90800754 None:intergenic 35.0%
AGAACAAACTCAATGACCAA+AGG + Chr3:90804984-90805003 MsG0380017023.01.T01:intron 35.0%
AGAATTAGATCCATAACCAC+AGG - Chr3:90800996-90801015 None:intergenic 35.0%
AGCTTATTGGGGATTATTTC+TGG + Chr3:90806994-90807013 MsG0380017023.01.T01:intron 35.0%
AGTCAGTAATCAATAAAGGC+TGG + Chr3:90801268-90801287 MsG0380017023.01.T01:intron 35.0%
AGTCCTCATAACTTCACTAT+TGG + Chr3:90802168-90802187 MsG0380017023.01.T01:intron 35.0%
AGTTGTGTCCCAATCAATAT+GGG + Chr3:90803257-90803276 MsG0380017023.01.T01:intron 35.0%
ATAAATGACTCACAGGAAAG+GGG - Chr3:90801237-90801256 None:intergenic 35.0%
ATGGTATCAAAGCTTGATCA+AGG - Chr3:90805718-90805737 None:intergenic 35.0%
ATTGAATTGTAACCATCCTG+TGG + Chr3:90800977-90800996 MsG0380017023.01.T01:intron 35.0%
CAGATAGTAATAGTTGAAGG+GGG - Chr3:90806359-90806378 None:intergenic 35.0%
CCACTCTTTAAGCTATTTAG+CGG + Chr3:90803517-90803536 MsG0380017023.01.T01:intron 35.0%
CCAGATAGTAATAGTTGAAG+GGG - Chr3:90806360-90806379 None:intergenic 35.0%
CCTGAAAGACAAACAAATGA+AGG - Chr3:90804295-90804314 None:intergenic 35.0%
CCTTCATTTGTTTGTCTTTC+AGG + Chr3:90804292-90804311 MsG0380017023.01.T01:CDS 35.0%
CGCATCACTAAAAATAAGAC+TGG + Chr3:90803975-90803994 MsG0380017023.01.T01:intron 35.0%
CTAACTATGCCAAGACAATA+GGG + Chr3:90803795-90803814 MsG0380017023.01.T01:intron 35.0%
CTCTTGTGTAAAAACAGGTA+AGG - Chr3:90802647-90802666 None:intergenic 35.0%
GCAGCATGTATGATAACAAA+TGG - Chr3:90806798-90806817 None:intergenic 35.0%
GCCAGATAGTAATAGTTGAA+GGG - Chr3:90806361-90806380 None:intergenic 35.0%
GGAAAACTTTGCAATTGGTT+TGG - Chr3:90800692-90800711 None:intergenic 35.0%
GTAAAATTATTGCAGAGCCT+TGG + Chr3:90802458-90802477 MsG0380017023.01.T01:CDS 35.0%
GTATAAATGACTCACAGGAA+AGG - Chr3:90801239-90801258 None:intergenic 35.0%
GTTCATGATCTTAGATGTTG+TGG + Chr3:90801840-90801859 MsG0380017023.01.T01:intron 35.0%
TACTACTTGGTTTCATGACT+TGG - Chr3:90800736-90800755 None:intergenic 35.0%
TATGGGGAGTAAAAAACTCA+TGG + Chr3:90803281-90803300 MsG0380017023.01.T01:intron 35.0%
TCAAAGTGCACAACTCTTAA+CGG - Chr3:90805376-90805395 None:intergenic 35.0%
TCAACTATCAATTTCGGTCA+TGG - Chr3:90805737-90805756 None:intergenic 35.0%
TCACTACTTATAGCACTTCA+TGG + Chr3:90803459-90803478 MsG0380017023.01.T01:intron 35.0%
TCTAGTTGTTCCTTTGTGAA+TGG - Chr3:90805441-90805460 None:intergenic 35.0%
TGAATTGATGCCCTAACTAA+AGG - Chr3:90802120-90802139 None:intergenic 35.0%
TGACCAACATTGTTTACCAA+GGG - Chr3:90803770-90803789 None:intergenic 35.0%
TGCCAGATAGTAATAGTTGA+AGG - Chr3:90806362-90806381 None:intergenic 35.0%
TGGATTGTCTTTCTATTAGC+TGG + Chr3:90803171-90803190 MsG0380017023.01.T01:intron 35.0%
TGGTTGTACTACAAACTACA+GGG + Chr3:90801867-90801886 MsG0380017023.01.T01:intron 35.0%
TTAAAGAGTGGTCTTTGATG+AGG - Chr3:90803508-90803527 None:intergenic 35.0%
TTAAGGGAATGCATACTACT+TGG - Chr3:90800749-90800768 None:intergenic 35.0%
TTCCATACAGTTCATTAACC+AGG - Chr3:90805240-90805259 None:intergenic 35.0%
TTCCATGGTCTCAAATTGTT+AGG + Chr3:90805110-90805129 MsG0380017023.01.T01:intron 35.0%
TTCGTTGAAGTTTCTAACTG+TGG + Chr3:90801416-90801435 MsG0380017023.01.T01:intron 35.0%
TTGAAGGCAAAGGAAAATAC+GGG + Chr3:90805140-90805159 MsG0380017023.01.T01:intron 35.0%
TTGACCAACATTGTTTACCA+AGG - Chr3:90803771-90803790 None:intergenic 35.0%
TTGCCAATAGTGAAGTTATG+AGG - Chr3:90802174-90802193 None:intergenic 35.0%
TTGCTTATGCTTGCTTACAT+CGG - Chr3:90806000-90806019 None:intergenic 35.0%
TTGGTTGTACTACAAACTAC+AGG + Chr3:90801866-90801885 MsG0380017023.01.T01:intron 35.0%
TTGTTCAATAGTTGGATGCA+AGG + Chr3:90807031-90807050 MsG0380017023.01.T01:intron 35.0%
TTTCTCATCTTAATTGCTGG+TGG + Chr3:90806568-90806587 MsG0380017023.01.T01:intron 35.0%
! AACTTGAAGACTGTTTCTCT+TGG - Chr3:90805413-90805432 None:intergenic 35.0%
! AAGCTATTTAGCGGATGTTT+GGG + Chr3:90803526-90803545 MsG0380017023.01.T01:intron 35.0%
! AGTTGACCGACATTAACTTT+TGG - Chr3:90803059-90803078 None:intergenic 35.0%
! ATAAAGTGTCCTAGAGCTAT+AGG + Chr3:90801994-90802013 MsG0380017023.01.T01:intron 35.0%
! GAGAAAGAAACTCTGAAAGT+TGG - Chr3:90806554-90806573 None:intergenic 35.0%
! GTAATTATATGTGTCGGTGT+CGG + Chr3:90805504-90805523 MsG0380017023.01.T01:intron 35.0%
! TAAAGTGTCCTAGAGCTATA+GGG + Chr3:90801995-90802014 MsG0380017023.01.T01:intron 35.0%
! TAAGCTATTTAGCGGATGTT+TGG + Chr3:90803525-90803544 MsG0380017023.01.T01:intron 35.0%
! TCAATGTTTTATGTGCATGC+CGG - Chr3:90807098-90807117 None:intergenic 35.0%
! TCTAAAGTCCTACATAAGGA+GGG + Chr3:90802583-90802602 MsG0380017023.01.T01:intron 35.0%
! TCTTGGCATTAGTTTAGACT+AGG - Chr3:90803622-90803641 None:intergenic 35.0%
! TTCTGGGAAAACTTTGCAAT+TGG - Chr3:90800697-90800716 None:intergenic 35.0%
! TTGTTGGAAGTTTTCCGAAT+TGG + Chr3:90802500-90802519 MsG0380017023.01.T01:CDS 35.0%
! TTTCTAGCAGTGAGAAATAC+TGG - Chr3:90802352-90802371 None:intergenic 35.0%
! TTTTTCGTAACACATGTCGA+TGG + Chr3:90805692-90805711 MsG0380017023.01.T01:intron 35.0%
!! CTCTAGAAAATGTTTTCCTC+AGG + Chr3:90800948-90800967 MsG0380017023.01.T01:intron 35.0%
!!! ACCCTATTTTTATATCGGGT+AGG - Chr3:90802046-90802065 None:intergenic 35.0%
!!! AGTTGGAATTGTGGTTTTGA+AGG + Chr3:90804529-90804548 MsG0380017023.01.T01:CDS 35.0%
!!! ATTTTTGTTATTGCGCACGA+TGG + Chr3:90804344-90804363 MsG0380017023.01.T01:CDS 35.0%
!!! CTTACCTGTTTTTACACAAG+AGG + Chr3:90802645-90802664 MsG0380017023.01.T01:intron 35.0%
!!! GTGCATAGGTCTAGTTTTAT+CGG - Chr3:90801893-90801912 None:intergenic 35.0%
AAATTAGCAGCTCCATCATG+TGG + Chr3:90800812-90800831 MsG0380017023.01.T01:intron 40.0%
AACCCACAAATATTAGCAGC+TGG - Chr3:90804038-90804057 None:intergenic 40.0%
AACCGAAACTTGATCTTCCA+TGG + Chr3:90805095-90805114 MsG0380017023.01.T01:intron 40.0%
AATATTAGCAGCTGGAGTGA+CGG - Chr3:90804030-90804049 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - Chr3:90802652-90802671 None:intergenic 40.0%
ACAGTTCATTAACCAGGCAA+TGG - Chr3:90805234-90805253 None:intergenic 40.0%
ACCAATACACACTGGAAACA+CGG - Chr3:90801820-90801839 None:intergenic 40.0%
ACTCCAGCTGCTAATATTTG+TGG + Chr3:90804032-90804051 MsG0380017023.01.T01:intron 40.0%
AGAGCTAAGATACCACTTTC+GGG + Chr3:90801665-90801684 MsG0380017023.01.T01:intron 40.0%
AGAGTCCATACCAATGTCTT+AGG - Chr3:90801025-90801044 None:intergenic 40.0%
ATAAGCACAGTTCCACATGA+TGG - Chr3:90800827-90800846 None:intergenic 40.0%
ATGCTAATGGGGGATGAATA+TGG + Chr3:90806876-90806895 MsG0380017023.01.T01:CDS 40.0%
ATTCCTAGATCGGTGAAACT+AGG - Chr3:90804899-90804918 None:intergenic 40.0%
ATTCCTAGTTTCACCGATCT+AGG + Chr3:90804893-90804912 MsG0380017023.01.T01:intron 40.0%
ATTTATTACCTGATGAGGGG+AGG - Chr3:90801564-90801583 None:intergenic 40.0%
CAATAGTTGGATGCAAGGAA+GGG + Chr3:90807036-90807055 MsG0380017023.01.T01:intron 40.0%
CAATGGTCAAGGAGTAACAA+GGG - Chr3:90805217-90805236 None:intergenic 40.0%
CAGACACCACCTTAATTAGA+TGG - Chr3:90803891-90803910 None:intergenic 40.0%
CCCCTTCAACTATTACTATC+TGG + Chr3:90806357-90806376 MsG0380017023.01.T01:intron 40.0%
CCGCTAAATAGCTTAAAGAG+TGG - Chr3:90803520-90803539 None:intergenic 40.0%
CTCATATCAATTCCCGAAAG+TGG - Chr3:90801680-90801699 None:intergenic 40.0%
CTCCAGCTGCTAATATTTGT+GGG + Chr3:90804033-90804052 MsG0380017023.01.T01:intron 40.0%
CTCCTTTAACACATGTCCTA+GGG + Chr3:90803368-90803387 MsG0380017023.01.T01:intron 40.0%
GAAGATCAAGTTTCGGTTTC+CGG - Chr3:90805093-90805112 None:intergenic 40.0%
GACCATGGAAGATCAAGTTT+CGG - Chr3:90805100-90805119 None:intergenic 40.0%
GAGACTCTAACGATTGTAGA+CGG + Chr3:90805015-90805034 MsG0380017023.01.T01:intron 40.0%
GAGTTCATAACCGTTTGCAT+TGG + Chr3:90805582-90805601 MsG0380017023.01.T01:intron 40.0%
GCTGTGCCAAAAGTTAATGT+CGG + Chr3:90803050-90803069 MsG0380017023.01.T01:intron 40.0%
GTGTCTAAATTGGAAAGCCA+TGG + Chr3:90805178-90805197 MsG0380017023.01.T01:intron 40.0%
GTTTGACTCAACTCAACCAA+TGG - Chr3:90802024-90802043 None:intergenic 40.0%
TAGGGTGATTCTGGTATGAA+GGG + Chr3:90803386-90803405 MsG0380017023.01.T01:intron 40.0%
TCAATAGTTGGATGCAAGGA+AGG + Chr3:90807035-90807054 MsG0380017023.01.T01:intron 40.0%
TCATGAACACCAATACACAC+TGG - Chr3:90801828-90801847 None:intergenic 40.0%
TCCAGCTTCTGAATCTTCTT+AGG - Chr3:90805293-90805312 None:intergenic 40.0%
TCTCCAATGCGATAAAGTAC+CGG + Chr3:90807076-90807095 MsG0380017023.01.T01:CDS 40.0%
TCTCCTTTAACACATGTCCT+AGG + Chr3:90803367-90803386 MsG0380017023.01.T01:intron 40.0%
TGCCCTAACTAAAGGAATCA+AGG - Chr3:90802112-90802131 None:intergenic 40.0%
TGCCTGGTTAATGAACTGTA+TGG + Chr3:90805235-90805254 MsG0380017023.01.T01:intron 40.0%
TGTAGCACAACGAAGCTAAT+GGG + Chr3:90804475-90804494 MsG0380017023.01.T01:intron 40.0%
TGTGGAGGTCTATATCTTGT+TGG + Chr3:90802484-90802503 MsG0380017023.01.T01:CDS 40.0%
TTAGATCCATAACCACAGGA+TGG - Chr3:90800992-90801011 None:intergenic 40.0%
TTCAGTTTGACACAGTGCAT+AGG - Chr3:90801907-90801926 None:intergenic 40.0%
TTCTTAGGCAGGAAAACGAA+GGG - Chr3:90805278-90805297 None:intergenic 40.0%
TTCTTGACAGCCTAAGACAT+TGG + Chr3:90801012-90801031 MsG0380017023.01.T01:intron 40.0%
TTGTAACCATCCTGTGGTTA+TGG + Chr3:90800983-90801002 MsG0380017023.01.T01:intron 40.0%
TTGTAGCACAACGAAGCTAA+TGG + Chr3:90804474-90804493 MsG0380017023.01.T01:intron 40.0%
TTGTTATCTGTCTGTCTGAC+AGG + Chr3:90806186-90806205 MsG0380017023.01.T01:intron 40.0%
! AAAGTGTCCTAGAGCTATAG+GGG + Chr3:90801996-90802015 MsG0380017023.01.T01:intron 40.0%
! AGACTGTTTCTCTTGGTTAG+AGG - Chr3:90805406-90805425 None:intergenic 40.0%
! AGCCTAACAATTTGAGACCA+TGG - Chr3:90805115-90805134 None:intergenic 40.0%
! ATCCCTCTTGGTAGCTTATT+GGG + Chr3:90806982-90807001 MsG0380017023.01.T01:intron 40.0%
! ATTTAGCGGATGTTTGGGAA+TGG + Chr3:90803531-90803550 MsG0380017023.01.T01:intron 40.0%
! GGTCATTGAGTTTGTTCTGT+TGG - Chr3:90804982-90805001 None:intergenic 40.0%
! TCCCAATCAATATGGGCTAT+GGG + Chr3:90803264-90803283 MsG0380017023.01.T01:intron 40.0%
! TGGAAGTTTTCCGAATTGGA+CGG + Chr3:90802504-90802523 MsG0380017023.01.T01:CDS 40.0%
! TTTTCTGTCGGTCACTATTC+TGG - Chr3:90806090-90806109 None:intergenic 40.0%
!! AGCTCTGAAGTTGAATTAGC+GGG + Chr3:90803578-90803597 MsG0380017023.01.T01:intron 40.0%
!! AGGCTGATTTTTGAAGGCAA+AGG + Chr3:90805130-90805149 MsG0380017023.01.T01:intron 40.0%
!! AGTTTTGTCACGTGACTGAA+AGG - Chr3:90802696-90802715 None:intergenic 40.0%
!! CAGCTCTGAAGTTGAATTAG+CGG + Chr3:90803577-90803596 MsG0380017023.01.T01:intron 40.0%
!! CTCTAAAGTCCTACATAAGG+AGG + Chr3:90802582-90802601 MsG0380017023.01.T01:intron 40.0%
!! GTGCTCTAAAGTCCTACATA+AGG + Chr3:90802579-90802598 MsG0380017023.01.T01:intron 40.0%
!! TATGTAGGACTTTAGAGCAC+CGG - Chr3:90802579-90802598 None:intergenic 40.0%
!! TGTTATTTCCGTAGCGAGTA+TGG - Chr3:90806902-90806921 None:intergenic 40.0%
AAAACTTTACCGTTGCGCCA+AGG + Chr3:90802710-90802729 MsG0380017023.01.T01:intron 45.0%
AACACCGATGATGCTAATGG+GGG + Chr3:90806866-90806885 MsG0380017023.01.T01:CDS 45.0%
AATCGTTAGAGTCTCCGATG+CGG - Chr3:90805010-90805029 None:intergenic 45.0%
AATTTCCAGAATGCGGACCT+TGG + Chr3:90806031-90806050 MsG0380017023.01.T01:intron 45.0%
ACATTGTTTACCAAGGGAGG+AGG - Chr3:90803764-90803783 None:intergenic 45.0%
AGCTTTGCAACTCGTGTTTC+TGG + Chr3:90803410-90803429 MsG0380017023.01.T01:CDS 45.0%
AGGGTGATTCTGGTATGAAG+GGG + Chr3:90803387-90803406 MsG0380017023.01.T01:intron 45.0%
AGTCGTAAGTCGAGTGGAAA+TGG + Chr3:90805606-90805625 MsG0380017023.01.T01:intron 45.0%
ATACTGTGTCGAGGAACTGA+TGG + Chr3:90801522-90801541 MsG0380017023.01.T01:CDS 45.0%
ATCCCCAATAAGCTACCAAG+AGG - Chr3:90806988-90807007 None:intergenic 45.0%
ATGCCGGTACTTTATCGCAT+TGG - Chr3:90807082-90807101 None:intergenic 45.0%
ATGCTAGCATAAGAGCTCTG+CGG + Chr3:90806220-90806239 MsG0380017023.01.T01:intron 45.0%
CAAACATTACCTGACCCTCA+TGG - Chr3:90801301-90801320 None:intergenic 45.0%
CACCCTAGGACATGTGTTAA+AGG - Chr3:90803373-90803392 None:intergenic 45.0%
CACTGACACGTTTAAGAGAG+TGG + Chr3:90805528-90805547 MsG0380017023.01.T01:intron 45.0%
CATTAACCAGGCAATGGTCA+AGG - Chr3:90805228-90805247 None:intergenic 45.0%
CATTGTTTACCAAGGGAGGA+GGG - Chr3:90803763-90803782 None:intergenic 45.0%
CCAACATTGTTTACCAAGGG+AGG - Chr3:90803767-90803786 None:intergenic 45.0%
CCTCCCTTGGTAAACAATGT+TGG + Chr3:90803764-90803783 MsG0380017023.01.T01:intron 45.0%
CGGCATGCTGTCATGATATT+GGG + Chr3:90802886-90802905 MsG0380017023.01.T01:intron 45.0%
CGTGCAAACACAAAACTGGT+TGG + Chr3:90802245-90802264 MsG0380017023.01.T01:intron 45.0%
CTAATGGGAAGGTGGAATGA+TGG + Chr3:90804490-90804509 MsG0380017023.01.T01:CDS 45.0%
CTAGGGTGATTCTGGTATGA+AGG + Chr3:90803385-90803404 MsG0380017023.01.T01:intron 45.0%
CTTACGACTGCCAATGCAAA+CGG - Chr3:90805595-90805614 None:intergenic 45.0%
CTTCATACCAGAATCACCCT+AGG - Chr3:90803387-90803406 None:intergenic 45.0%
CTTCTTAGGCAGGAAAACGA+AGG - Chr3:90805279-90805298 None:intergenic 45.0%
GAACACCGATGATGCTAATG+GGG + Chr3:90806865-90806884 MsG0380017023.01.T01:CDS 45.0%
GAACAGCGTAGACCATATCA+TGG + Chr3:90804316-90804335 MsG0380017023.01.T01:CDS 45.0%
GAATATGGCCATACTCGCTA+CGG + Chr3:90806891-90806910 MsG0380017023.01.T01:CDS 45.0%
GACAGCCTAAGACATTGGTA+TGG + Chr3:90801017-90801036 MsG0380017023.01.T01:intron 45.0%
GCAAGATTTCACTACGAGTC+AGG + Chr3:90802808-90802827 MsG0380017023.01.T01:intron 45.0%
GCAATGGTCAAGGAGTAACA+AGG - Chr3:90805218-90805237 None:intergenic 45.0%
GCCAAAATTGAGACCACACT+GGG - Chr3:90806390-90806409 None:intergenic 45.0%
GCCTAAGAAGATTCAGAAGC+TGG + Chr3:90805289-90805308 MsG0380017023.01.T01:intron 45.0%
GCGTACAATACACCAATGGT+GGG - Chr3:90802622-90802641 None:intergenic 45.0%
GCTTCTGAATCTTCTTAGGC+AGG - Chr3:90805289-90805308 None:intergenic 45.0%
GGAACACCGATGATGCTAAT+GGG + Chr3:90806864-90806883 MsG0380017023.01.T01:CDS 45.0%
GTCACTGAGTATCATGTGGA+CGG + Chr3:90801477-90801496 MsG0380017023.01.T01:CDS 45.0%
TAGGGTCACTGAGTATCATG+TGG + Chr3:90801473-90801492 MsG0380017023.01.T01:intron 45.0%
TCATCCCCCATTAGCATCAT+CGG - Chr3:90806873-90806892 None:intergenic 45.0%
TCCCCAATAAGCTACCAAGA+GGG - Chr3:90806987-90807006 None:intergenic 45.0%
TCCCCATAGCCCATATTGAT+TGG - Chr3:90803269-90803288 None:intergenic 45.0%
TCCGTGTTTCCAGTGTGTAT+TGG + Chr3:90801816-90801835 MsG0380017023.01.T01:intron 45.0%
TGCAGATCTGCCTGTTATTG+CGG + Chr3:90802221-90802240 MsG0380017023.01.T01:intron 45.0%
TGCCAAAATTGAGACCACAC+TGG - Chr3:90806391-90806410 None:intergenic 45.0%
TGCGTACAATACACCAATGG+TGG - Chr3:90802623-90802642 None:intergenic 45.0%
TGGAGTGGCCAAGAAGTAAT+GGG + Chr3:90805635-90805654 MsG0380017023.01.T01:intron 45.0%
TTATTAATGAGGGGGAGCCT+TGG - Chr3:90802730-90802749 None:intergenic 45.0%
TTGGAAAGCCATGGTGACAA+CGG + Chr3:90805187-90805206 MsG0380017023.01.T01:intron 45.0%
TTGGAGTGGCCAAGAAGTAA+TGG + Chr3:90805634-90805653 MsG0380017023.01.T01:intron 45.0%
! ATGTGGAAGCATGCTCTTAC+CGG + Chr3:90804951-90804970 MsG0380017023.01.T01:intron 45.0%
! CATCCCTCTTGGTAGCTTAT+TGG + Chr3:90806981-90807000 MsG0380017023.01.T01:intron 45.0%
! CCCAATCAATATGGGCTATG+GGG + Chr3:90803265-90803284 MsG0380017023.01.T01:intron 45.0%
! CCCCATAGCCCATATTGATT+GGG - Chr3:90803268-90803287 None:intergenic 45.0%
! GAAGGTGTGAGAAACTGAAG+AGG + Chr3:90805666-90805685 MsG0380017023.01.T01:intron 45.0%
! GAAGTTATGAGGACTGACTC+AGG - Chr3:90802163-90802182 None:intergenic 45.0%
! GTCCCAATCAATATGGGCTA+TGG + Chr3:90803263-90803282 MsG0380017023.01.T01:intron 45.0%
! TCCCTCTTGGTAGCTTATTG+GGG + Chr3:90806983-90807002 MsG0380017023.01.T01:intron 45.0%
!! AAGGCTGGTTTGTTTCCATG+AGG + Chr3:90801283-90801302 MsG0380017023.01.T01:intron 45.0%
!! AGGCTGGTTTGTTTCCATGA+GGG + Chr3:90801284-90801303 MsG0380017023.01.T01:intron 45.0%
!! ATCTTGGATCAAGGAGTGTC+AGG - Chr3:90804821-90804840 None:intergenic 45.0%
!! ATGCTTGCTTACATCGGTTC+AGG - Chr3:90805994-90806013 None:intergenic 45.0%
!! GCTCTGAAGTTGAATTAGCG+GGG + Chr3:90803579-90803598 MsG0380017023.01.T01:intron 45.0%
!! TAGCTTATGGCTCTGACTGT+AGG + Chr3:90804115-90804134 MsG0380017023.01.T01:intron 45.0%
!! TAAAAAAATAAACAAATAAA+TGG - Chr3:90804797-90804816 None:intergenic 5.0%
AACGATTGTAGACGGCAGCA+TGG + Chr3:90805023-90805042 MsG0380017023.01.T01:intron 50.0%
AATGGCACCCCTATAGCTCT+AGG - Chr3:90802006-90802025 None:intergenic 50.0%
ACGATTGTAGACGGCAGCAT+GGG + Chr3:90805024-90805043 MsG0380017023.01.T01:intron 50.0%
AGCACCACGCTTCTGATTGA+AGG - Chr3:90805559-90805578 None:intergenic 50.0%
AGTCCTACATAAGGAGGGTC+CGG + Chr3:90802588-90802607 MsG0380017023.01.T01:intron 50.0%
ATAATGCATCCCTCCTCCCT+TGG + Chr3:90803751-90803770 MsG0380017023.01.T01:intron 50.0%
ATCTGGCAAATAGCCCAGTG+TGG + Chr3:90806374-90806393 MsG0380017023.01.T01:intron 50.0%
ATTCCCTCCCTCTTCACTCA+TGG + Chr3:90804917-90804936 MsG0380017023.01.T01:intron 50.0%
ATTGGCAGTCGTAAGTCGAG+TGG + Chr3:90805600-90805619 MsG0380017023.01.T01:intron 50.0%
CAACGAAGCTAATGGGAAGG+TGG + Chr3:90804482-90804501 MsG0380017023.01.T01:intron 50.0%
CAAGGAAGGGCGATCACTTT+AGG + Chr3:90807049-90807068 MsG0380017023.01.T01:CDS 50.0%
CACATGTCCTAGGGTGATTC+TGG + Chr3:90803377-90803396 MsG0380017023.01.T01:intron 50.0%
CACCACGCTTCTGATTGAAG+GGG - Chr3:90805557-90805576 None:intergenic 50.0%
CGGTCGTGCAAACACAAAAC+TGG + Chr3:90802241-90802260 MsG0380017023.01.T01:intron 50.0%
CTCGCAAGTATACTGTGTCG+AGG + Chr3:90801513-90801532 MsG0380017023.01.T01:CDS 50.0%
GAGGGAGGGAATTCCTAGAT+CGG - Chr3:90804909-90804928 None:intergenic 50.0%
GCACAACGAAGCTAATGGGA+AGG + Chr3:90804479-90804498 MsG0380017023.01.T01:intron 50.0%
GCACCACGCTTCTGATTGAA+GGG - Chr3:90805558-90805577 None:intergenic 50.0%
GCACTCAGCATCGTAGTTCT+GGG - Chr3:90800713-90800732 None:intergenic 50.0%
GCACTCTGCCCATTACTTCT+TGG - Chr3:90805646-90805665 None:intergenic 50.0%
GCGGCATGCTGTCATGATAT+TGG + Chr3:90802885-90802904 MsG0380017023.01.T01:intron 50.0%
GGCAGATCTGCAGAAAGTTC+TGG - Chr3:90802213-90802232 None:intergenic 50.0%
GGCTGCGTACAATACACCAA+TGG - Chr3:90802626-90802645 None:intergenic 50.0%
GGGAACACCGATGATGCTAA+TGG + Chr3:90806863-90806882 MsG0380017023.01.T01:intron 50.0%
GTCACGTGACTGAAAGGTCA+CGG - Chr3:90802690-90802709 None:intergenic 50.0%
GTTACTCCTTGACCATTGCC+TGG + Chr3:90805219-90805238 MsG0380017023.01.T01:intron 50.0%
GTTTGCACGACCGCAATAAC+AGG - Chr3:90802234-90802253 None:intergenic 50.0%
TACCCCTTCAATCAGAAGCG+TGG + Chr3:90805552-90805571 MsG0380017023.01.T01:intron 50.0%
TATAGACCTCCACAGTCCCA+AGG - Chr3:90802478-90802497 None:intergenic 50.0%
TCAATGACCAAAGGCCGCAT+CGG + Chr3:90804993-90805012 MsG0380017023.01.T01:intron 50.0%
TCACGTGACTGAAAGGTCAC+GGG - Chr3:90802689-90802708 None:intergenic 50.0%
TCGAGTGGAAATGGCTGTGT+TGG + Chr3:90805615-90805634 MsG0380017023.01.T01:intron 50.0%
TGGAAAGCCATGGTGACAAC+GGG + Chr3:90805188-90805207 MsG0380017023.01.T01:intron 50.0%
TGGAAATGGCTGTGTTGGAG+TGG + Chr3:90805620-90805639 MsG0380017023.01.T01:intron 50.0%
! AAGGTCACGGGTTCAAGTTC+TGG - Chr3:90802677-90802696 None:intergenic 50.0%
! GAGGACTGACTCAGGTTCAT+TGG - Chr3:90802155-90802174 None:intergenic 50.0%
! GCCCAGTGTGGTCTCAATTT+TGG + Chr3:90806386-90806405 MsG0380017023.01.T01:intron 50.0%
! GGCAAGAGACTAGCTGACTT+AGG + Chr3:90805888-90805907 MsG0380017023.01.T01:intron 50.0%
! GGTTTGTTTCCATGAGGGTC+AGG + Chr3:90801289-90801308 MsG0380017023.01.T01:intron 50.0%
! TTAGCATCATCGGTGTTCCC+TGG - Chr3:90806863-90806882 None:intergenic 50.0%
!! AAGTAATGGGCAGAGTGCGA+AGG + Chr3:90805648-90805667 MsG0380017023.01.T01:intron 50.0%
!! TAGAGCTATAGGGGTGCCAT+TGG + Chr3:90802005-90802024 MsG0380017023.01.T01:intron 50.0%
ACATAAGGAGGGTCCGGGAA+GGG + Chr3:90802594-90802613 MsG0380017023.01.T01:intron 55.0%
AGGGATACCCGTTGTCACCA+TGG - Chr3:90805198-90805217 None:intergenic 55.0%
AGGTTCCAAGGTCCGCATTC+TGG - Chr3:90806039-90806058 None:intergenic 55.0%
ATTGCAGAGCCTTGGGACTG+TGG + Chr3:90802466-90802485 MsG0380017023.01.T01:CDS 55.0%
CTACTGGGGGCTATGTGTCA+AGG + Chr3:90806631-90806650 MsG0380017023.01.T01:intron 55.0%
GAAGCATGCTCTTACCGGCA+CGG + Chr3:90804956-90804975 MsG0380017023.01.T01:intron 55.0%
GGCACTCAGCATCGTAGTTC+TGG - Chr3:90800714-90800733 None:intergenic 55.0%
GTCCTACATAAGGAGGGTCC+GGG + Chr3:90802589-90802608 MsG0380017023.01.T01:intron 55.0%
GTGCCATGAGTGAAGAGGGA+GGG - Chr3:90804923-90804942 None:intergenic 55.0%
GTGCGTGCCATGAGTGAAGA+GGG - Chr3:90804927-90804946 None:intergenic 55.0%
GTTTGTTCTGTTGGCCGTGC+CGG - Chr3:90804973-90804992 None:intergenic 55.0%
TACATAAGGAGGGTCCGGGA+AGG + Chr3:90802593-90802612 MsG0380017023.01.T01:intron 55.0%
TCAATGCTCCTCCCCTCATC+AGG + Chr3:90801553-90801572 MsG0380017023.01.T01:CDS 55.0%
TCATGGCACGCACAGACATG+TGG + Chr3:90804934-90804953 MsG0380017023.01.T01:intron 55.0%
TGTGCGTGCCATGAGTGAAG+AGG - Chr3:90804928-90804947 None:intergenic 55.0%
TTCCCGGACCCTCCTTATGT+AGG - Chr3:90802594-90802613 None:intergenic 55.0%
!! ATGAGGGGAGGAGCATTGAG+GGG - Chr3:90801552-90801571 None:intergenic 55.0%
!! GATGAGGGGAGGAGCATTGA+GGG - Chr3:90801553-90801572 None:intergenic 55.0%
!! TGATGAGGGGAGGAGCATTG+AGG - Chr3:90801554-90801573 None:intergenic 55.0%
AGAGTCTCCGATGCGGCCTT+TGG - Chr3:90805003-90805022 None:intergenic 60.0%
CATAAGGAGGGTCCGGGAAG+GGG + Chr3:90802595-90802614 MsG0380017023.01.T01:intron 60.0%
CGTGCCATGAGTGAAGAGGG+AGG - Chr3:90804924-90804943 None:intergenic 60.0%
GCATAAGAGCTCTGCGGTCG+AGG + Chr3:90806226-90806245 MsG0380017023.01.T01:intron 60.0%
!! TGAGGGGAGGAGCATTGAGG+GGG - Chr3:90801551-90801570 None:intergenic 60.0%
CAGAGGCAAGGCTGCAGCAC+AGG + Chr3:90805050-90805069 MsG0380017023.01.T01:intron 65.0%
CAGCATGGGAGCCAGAGGCA+AGG + Chr3:90805038-90805057 MsG0380017023.01.T01:intron 65.0%
CTGTGCTGCAGCCTTGCCTC+TGG - Chr3:90805052-90805071 None:intergenic 65.0%
GCAGAGCCTTGGGACTGTGG+AGG + Chr3:90802469-90802488 MsG0380017023.01.T01:CDS 65.0%
GGCAGTGCAGGCTGCACAAC+CGG + Chr3:90805071-90805090 MsG0380017023.01.T01:intron 65.0%
! CCAATGGTGGGACCCCTTCC+CGG - Chr3:90802610-90802629 None:intergenic 65.0%
!! GAGGGGAGGAGCATTGAGGG+GGG - Chr3:90801550-90801569 None:intergenic 65.0%
CCGGGAAGGGGTCCCACCAT+TGG + Chr3:90802607-90802626 MsG0380017023.01.T01:intron 70.0%
GACGGCAGCATGGGAGCCAG+AGG + Chr3:90805033-90805052 MsG0380017023.01.T01:intron 70.0%
GAGGGGGAGCCTTGGCGCAA+CGG - Chr3:90802722-90802741 None:intergenic 70.0%
GGCTGCAGCACAGGCAGTGC+AGG + Chr3:90805059-90805078 MsG0380017023.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 90800683 90807182 90800683 ID=MsG0380017023.01;Name=MsG0380017023.01
Chr3 mRNA 90800683 90807182 90800683 ID=MsG0380017023.01.T01;Parent=MsG0380017023.01;Name=MsG0380017023.01.T01;_AED=0.49;_eAED=0.64;_QI=0|0.14|0.37|1|0.28|0.37|8|0|284
Chr3 exon 90800683 90800791 90800683 ID=MsG0380017023.01.T01:exon:15656;Parent=MsG0380017023.01.T01
Chr3 exon 90801476 90801615 90801476 ID=MsG0380017023.01.T01:exon:15657;Parent=MsG0380017023.01.T01
Chr3 exon 90802427 90802525 90802427 ID=MsG0380017023.01.T01:exon:15658;Parent=MsG0380017023.01.T01
Chr3 exon 90803389 90803451 90803389 ID=MsG0380017023.01.T01:exon:15659;Parent=MsG0380017023.01.T01
Chr3 exon 90804272 90804403 90804272 ID=MsG0380017023.01.T01:exon:15660;Parent=MsG0380017023.01.T01
Chr3 exon 90804490 90804555 90804490 ID=MsG0380017023.01.T01:exon:15661;Parent=MsG0380017023.01.T01
Chr3 exon 90806864 90806968 90806864 ID=MsG0380017023.01.T01:exon:15662;Parent=MsG0380017023.01.T01
Chr3 exon 90807042 90807182 90807042 ID=MsG0380017023.01.T01:exon:15663;Parent=MsG0380017023.01.T01
Chr3 CDS 90800683 90800791 90800683 ID=MsG0380017023.01.T01:cds;Parent=MsG0380017023.01.T01
Chr3 CDS 90801476 90801615 90801476 ID=MsG0380017023.01.T01:cds;Parent=MsG0380017023.01.T01
Chr3 CDS 90802427 90802525 90802427 ID=MsG0380017023.01.T01:cds;Parent=MsG0380017023.01.T01
Chr3 CDS 90803389 90803451 90803389 ID=MsG0380017023.01.T01:cds;Parent=MsG0380017023.01.T01
Chr3 CDS 90804272 90804403 90804272 ID=MsG0380017023.01.T01:cds;Parent=MsG0380017023.01.T01
Chr3 CDS 90804490 90804555 90804490 ID=MsG0380017023.01.T01:cds;Parent=MsG0380017023.01.T01
Chr3 CDS 90806864 90806968 90806864 ID=MsG0380017023.01.T01:cds;Parent=MsG0380017023.01.T01
Chr3 CDS 90807042 90807182 90807042 ID=MsG0380017023.01.T01:cds;Parent=MsG0380017023.01.T01
Gene Sequence

>MsG0380017023.01.T01

ATGAGACCAAACCAATTGCAAAGTTTTCCCAGAACTACGATGCTGAGTGCCCAAGTCATGAAACCAAGTAGTATGCATTCCCTTAAATTTATGAATAAATTGCAAAGCGGGTCACTGAGTATCATGTGGACGGATTTCGATTTGATCTCGCAAGTATACTGTGTCGAGGAACTGATGGTTCCCCCCTCAATGCTCCTCCCCTCATCAGGTAATAAATATATGCACAATATAGTTATAATCAACAGTAGGGCAATTGCTAAAGATGCTGTCTTGTCAAGATGTAAAATTATTGCAGAGCCTTGGGACTGTGGAGGTCTATATCTTGTTGGAAGTTTTCCGAATTGGACGGGTGATTCTGGTATGAAGGGGAGCTTTGCAACTCGTGTTTCTGGATCTTCTGATCTCTACAGATTTTTAACAGTGGCTTCTCGCCTTCATTTGTTTGTCTTTCAGGTGAACAGCGTAGACCATATCATGGTATTAATTTTTGTTATTGCGCACGATGGATTTAGCTTGCGTGATCTTGTTTCATACAACTTCAAGCTAATGGGAAGGTGGAATGATGGATGCAATGATAACTTTAGTTGGAATTGTGGTTTTGAAGGTAGAGGAACACCGATGATGCTAATGGGGGATGAATATGGCCATACTCGCTACGGAAATAACAATAGCTATGGGCATGATTCTGCCATTAATTTTTTCTTGTGGGATCAGTTGGATGCAAGGAAGGGCGATCACTTTAGGTTTTTCTCCAATGCGATAAAGTACCGGCATGCACATAAAACATTGAGTCATGAAAATTTTCTCAGTGAGGTGATTGCTTCACACTTTGATAAACTAATTCTACGAGCGTGA

Protein sequence

>MsG0380017023.01.T01

MRPNQLQSFPRTTMLSAQVMKPSSMHSLKFMNKLQSGSLSIMWTDFDLISQVYCVEELMVPPSMLLPSSGNKYMHNIVIINSRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWTGDSGMKGSFATRVSGSSDLYRFLTVASRLHLFVFQVNSVDHIMVLIFVIAHDGFSLRDLVSYNFKLMGRWNDGCNDNFSWNCGFEGRGTPMMLMGDEYGHTRYGNNNSYGHDSAINFFLWDQLDARKGDHFRFFSNAIKYRHAHKTLSHENFLSEVIASHFDKLILRA*