Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025548.01.T01 | XP_003612898.1 | 93.578 | 109 | 7 | 0 | 31 | 139 | 12 | 120 | 3.92E-68 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025548.01.T01 | G7KF21 | 93.578 | 109 | 7 | 0 | 31 | 139 | 12 | 120 | 1.87e-68 | 211 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048938.01 | MsG0580025548.01 | 0.841754 | 3.922117e-58 | 5.819682e-55 |
| MsG0180000114.01 | MsG0580025548.01 | 0.817889 | 2.609604e-52 | 1.924038e-49 |
| MsG0180000246.01 | MsG0580025548.01 | 0.826615 | 2.461782e-54 | 2.320350e-51 |
| MsG0180000599.01 | MsG0580025548.01 | 0.807981 | 3.875447e-50 | 2.189352e-47 |
| MsG0180000784.01 | MsG0580025548.01 | 0.827700 | 1.353354e-54 | 1.316474e-51 |
| MsG0180000785.01 | MsG0580025548.01 | 0.828319 | 9.604259e-55 | 9.512738e-52 |
| MsG0180001100.01 | MsG0580025548.01 | 0.848656 | 5.333068e-60 | 9.856528e-57 |
| MsG0180003633.01 | MsG0580025548.01 | 0.800396 | 1.469864e-48 | 6.836837e-46 |
| MsG0180003748.01 | MsG0580025548.01 | 0.801683 | 8.020496e-49 | 3.853937e-46 |
| MsG0180004103.01 | MsG0580025548.01 | 0.805017 | 1.635454e-49 | 8.559208e-47 |
| MsG0180004448.01 | MsG0580025548.01 | 0.801307 | 9.577462e-49 | 4.558828e-46 |
| MsG0180004934.01 | MsG0580025548.01 | 0.828565 | 8.376015e-55 | 8.356428e-52 |
| MsG0180005339.01 | MsG0580025548.01 | 0.807595 | 4.681250e-50 | 2.617881e-47 |
| MsG0180005391.01 | MsG0580025548.01 | 0.809809 | 1.574558e-50 | 9.336428e-48 |
| MsG0180005418.01 | MsG0580025548.01 | 0.832237 | 1.060338e-55 | 1.178010e-52 |
| MsG0180005807.01 | MsG0580025548.01 | 0.812487 | 4.136720e-51 | 2.633702e-48 |
| MsG0180005829.01 | MsG0580025548.01 | 0.836531 | 8.860790e-57 | 1.119709e-53 |
| MsG0280010564.01 | MsG0580025548.01 | 0.844301 | 8.228085e-59 | 1.322655e-55 |
| MsG0280010975.01 | MsG0580025548.01 | 0.825446 | 4.668191e-54 | 4.255568e-51 |
| MsG0380013342.01 | MsG0580025548.01 | 0.836235 | 1.053899e-56 | 1.320287e-53 |
| MsG0380014584.01 | MsG0580025548.01 | 0.800890 | 1.165584e-48 | 5.490136e-46 |
| MsG0380014909.01 | MsG0580025548.01 | 0.804039 | 2.616105e-49 | 1.335125e-46 |
| MsG0480018848.01 | MsG0580025548.01 | 0.837311 | 5.601836e-57 | 7.248087e-54 |
| MsG0480020322.01 | MsG0580025548.01 | 0.803696 | 3.081466e-49 | 1.558826e-46 |
| MsG0480020323.01 | MsG0580025548.01 | 0.800019 | 1.754076e-48 | 8.080950e-46 |
| MsG0480021207.01 | MsG0580025548.01 | 0.813809 | 2.120460e-51 | 1.398806e-48 |
| MsG0480021294.01 | MsG0580025548.01 | 0.839549 | 1.482374e-57 | 2.053959e-54 |
| MsG0480021817.01 | MsG0580025548.01 | 0.814737 | 1.322927e-51 | 8.948645e-49 |
| MsG0480022162.01 | MsG0580025548.01 | 0.823334 | 1.465197e-53 | 1.257820e-50 |
| MsG0480022537.01 | MsG0580025548.01 | 0.823810 | 1.133742e-53 | 9.865803e-51 |
| MsG0480022617.01 | MsG0580025548.01 | 0.818401 | 1.997903e-52 | 1.494125e-49 |
| MsG0480022624.01 | MsG0580025548.01 | 0.801267 | 9.762254e-49 | 4.641977e-46 |
| MsG0480023578.01 | MsG0580025548.01 | 0.801295 | 9.629875e-49 | 4.582419e-46 |
| MsG0480023877.01 | MsG0580025548.01 | 0.804798 | 1.817039e-49 | 9.456528e-47 |
| MsG0580024717.01 | MsG0580025548.01 | 0.804138 | 2.494409e-49 | 1.276251e-46 |
| MsG0580024759.01 | MsG0580025548.01 | 0.808970 | 2.383738e-50 | 1.382149e-47 |
| MsG0580024775.01 | MsG0580025548.01 | 0.826237 | 3.029677e-54 | 2.825033e-51 |
| MsG0580024788.01 | MsG0580025548.01 | 0.802011 | 6.868995e-49 | 3.328284e-46 |
| MsG0580024873.01 | MsG0580025548.01 | 0.826264 | 2.984915e-54 | 2.785400e-51 |
| MsG0580025523.01 | MsG0580025548.01 | 0.875946 | 2.062907e-68 | 9.819981e-65 |
| MsG0580025548.01 | MsG0580025549.01 | 0.862068 | 6.582793e-64 | 1.902803e-60 |
| MsG0580025548.01 | MsG0580028024.01 | 0.848455 | 6.061172e-60 | 1.113013e-56 |
| MsG0580025548.01 | MsG0580028033.01 | 0.807511 | 4.877769e-50 | 2.722061e-47 |
| MsG0580025548.01 | MsG0580029414.01 | 0.808762 | 2.640461e-50 | 1.522550e-47 |
| MsG0580025548.01 | MsG0580029912.01 | 0.819530 | 1.106778e-52 | 8.539232e-50 |
| MsG0580025548.01 | MsG0680030464.01 | 0.841006 | 6.171682e-58 | 8.946564e-55 |
| MsG0580025548.01 | MsG0680030680.01 | 0.808637 | 2.808028e-50 | 1.613853e-47 |
| MsG0580025548.01 | MsG0680030858.01 | 0.803037 | 4.219921e-49 | 2.098851e-46 |
| MsG0580025548.01 | MsG0680031562.01 | 0.802676 | 5.011028e-49 | 2.469525e-46 |
| MsG0580025548.01 | MsG0680032827.01 | 0.806607 | 7.578916e-50 | 4.131294e-47 |
| MsG0580025548.01 | MsG0680034766.01 | 0.826354 | 2.841263e-54 | 2.658246e-51 |
| MsG0580025548.01 | MsG0680034767.01 | 0.836594 | 8.538386e-57 | 1.081013e-53 |
| MsG0580025548.01 | MsG0780036443.01 | 0.807408 | 5.128078e-50 | 2.854149e-47 |
| MsG0580025548.01 | MsG0780036803.01 | 0.825262 | 5.159308e-54 | 4.679256e-51 |
| MsG0580025548.01 | MsG0780037363.01 | 0.809443 | 1.887653e-50 | 1.108435e-47 |
| MsG0580025548.01 | MsG0780037701.01 | 0.830587 | 2.700783e-55 | 2.857745e-52 |
| MsG0580025548.01 | MsG0780038056.01 | 0.823763 | 1.162306e-53 | 1.010158e-50 |
| MsG0580025548.01 | MsG0780039975.01 | 0.803975 | 2.697460e-49 | 1.374412e-46 |
| MsG0580025548.01 | MsG0780041091.01 | 0.857825 | 1.253555e-62 | 3.134245e-59 |
| MsG0580025548.01 | MsG0780041272.01 | 0.803632 | 3.177940e-49 | 1.604948e-46 |
| MsG0580025548.01 | MsG0880041999.01 | 0.847220 | 1.326989e-59 | 2.342071e-56 |
| MsG0580025548.01 | MsG0880042000.01 | 0.821063 | 4.926878e-53 | 3.967091e-50 |
| MsG0580025548.01 | MsG0880042022.01 | 0.808508 | 2.993043e-50 | 1.714473e-47 |
| MsG0580025548.01 | MsG0880042695.01 | 0.828379 | 9.290514e-55 | 9.218759e-52 |
| MsG0580025548.01 | MsG0880043278.01 | 0.812388 | 4.348553e-51 | 2.761178e-48 |
| MsG0580025548.01 | MsG0880045285.01 | 0.848093 | 7.633259e-60 | 1.385062e-56 |
| MsG0580025548.01 | MsG0880045771.01 | 0.800049 | 1.729661e-48 | 7.974477e-46 |
| MsG0580025548.01 | MsG0880046765.01 | 0.802391 | 5.736022e-49 | 2.806552e-46 |
| MsG0580025548.01 | MsG0880047152.01 | 0.806160 | 9.415879e-50 | 5.074650e-47 |
| MsG0580025548.01 | MsG0880047267.01 | 0.810357 | 1.199841e-50 | 7.216967e-48 |
| MsG0580025548.01 | MsG0880047322.01 | 0.811182 | 7.955480e-51 | 4.891362e-48 |
| MsG0580025548.01 | MsG0880047451.01 | 0.810143 | 1.334394e-50 | 7.981491e-48 |
| MsG0580025548.01 | MsG0880047614.01 | 0.873523 | 1.376826e-67 | 5.994148e-64 |
| MsG0380015547.01 | MsG0580025548.01 | 0.817481 | 3.225261e-52 | 2.351621e-49 |
| MsG0380015896.01 | MsG0580025548.01 | 0.831336 | 1.768714e-55 | 1.913503e-52 |
| MsG0380016194.01 | MsG0580025548.01 | 0.807769 | 4.298702e-50 | 2.415019e-47 |
| MsG0380016284.01 | MsG0580025548.01 | 0.847059 | 1.469132e-59 | 2.579740e-56 |
| MsG0380016527.01 | MsG0580025548.01 | 0.820744 | 5.834287e-53 | 4.655582e-50 |
| MsG0380016864.01 | MsG0580025548.01 | 0.812833 | 3.474002e-51 | 2.231764e-48 |
| MsG0380017293.01 | MsG0580025548.01 | 0.825793 | 3.861447e-54 | 3.555611e-51 |
| MsG0380017728.01 | MsG0580025548.01 | 0.809811 | 1.573576e-50 | 9.330850e-48 |
| MsG0380018046.01 | MsG0580025548.01 | -0.833331 | 5.670779e-56 | 6.510299e-53 |
| MsG0380018069.01 | MsG0580025548.01 | 0.804280 | 2.329796e-49 | 1.196387e-46 |
| MsG0480018402.01 | MsG0580025548.01 | 0.802687 | 4.984133e-49 | 2.457004e-46 |
| MsG0280008419.01 | MsG0580025548.01 | 0.815819 | 7.602454e-52 | 5.296430e-49 |
| MsG0280009256.01 | MsG0580025548.01 | 0.800848 | 1.188934e-48 | 5.593980e-46 |
| MsG0280010181.01 | MsG0580025548.01 | 0.827874 | 1.229515e-54 | 1.202131e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025548.01.T01 | MTR_5g430430 | 93.578 | 109 | 7 | 0 | 31 | 139 | 12 | 120 | 4.74e-72 | 211 |
| MsG0580025548.01.T01 | MTR_5g030290 | 93.578 | 109 | 7 | 0 | 31 | 139 | 12 | 120 | 4.74e-72 | 211 |
| MsG0580025548.01.T01 | MTR_5g030310 | 83.486 | 109 | 18 | 0 | 31 | 139 | 12 | 120 | 7.20e-63 | 188 |
| MsG0580025548.01.T01 | MTR_5g430440 | 82.569 | 109 | 19 | 0 | 31 | 139 | 12 | 120 | 1.02e-61 | 185 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTAAATTGTACTAAATT+TGG | 0.161551 | 5:-20321224 | MsG0580025548.01.T01:three_prime_UTR |
| TCACTTCTCTAGGGACAATT+TGG | 0.245955 | 5:+20321285 | None:intergenic |
| CTTGCTCTTGAGTGCAGCTT+TGG | 0.250449 | 5:+20322386 | None:intergenic |
| TCACTGCTACTCTCAATTTC+AGG | 0.257468 | 5:+20321447 | None:intergenic |
| CTCATATCATTGTGAGAATA+TGG | 0.263715 | 5:-20322413 | MsG0580025548.01.T01:CDS |
| TTGCTCTTGAGTGCAGCTTT+GGG | 0.361214 | 5:+20322387 | None:intergenic |
| TGTGTGATCGGCTATGAATT+TGG | 0.386297 | 5:-20321185 | MsG0580025548.01.T01:three_prime_UTR |
| AGGGTATCTAATGGCATGTT+TGG | 0.402958 | 5:-20323003 | None:intergenic |
| TTCAAGTTAATAAAATATCA+AGG | 0.452541 | 5:-20321248 | MsG0580025548.01.T01:three_prime_UTR |
| TTTGTAATTAGTAATGTGTT+TGG | 0.455176 | 5:-20321151 | MsG0580025548.01.T01:three_prime_UTR |
| GGCAGTGTGTTGTGCAAGAC+TGG | 0.455435 | 5:-20322138 | MsG0580025548.01.T01:CDS |
| CCCTTGCCTGAGTCTGCATC+AGG | 0.461443 | 5:+20321357 | None:intergenic |
| GTAATGCAATAGTATGTGTT+TGG | 0.464999 | 5:-20321113 | MsG0580025548.01.T01:three_prime_UTR |
| CCTTAGTGAATCACTTCTCT+AGG | 0.478513 | 5:+20321275 | None:intergenic |
| TACTAAATTTGGTTTATCAT+CGG | 0.484979 | 5:-20321213 | MsG0580025548.01.T01:three_prime_UTR |
| TGTGTTATAACTAGGACTAC+TGG | 0.487878 | 5:-20322102 | MsG0580025548.01.T01:CDS |
| TAAACCAATAAGCTTTGTGC+AGG | 0.493645 | 5:-20322200 | MsG0580025548.01.T01:intron |
| CCTAGAGAAGTGATTCACTA+AGG | 0.524929 | 5:-20321275 | MsG0580025548.01.T01:three_prime_UTR |
| ATAAGCTTTGTGCAGGAAAG+TGG | 0.528788 | 5:-20322193 | MsG0580025548.01.T01:intron |
| AGGACTACTGGACCTGATGC+TGG | 0.536873 | 5:-20322090 | MsG0580025548.01.T01:CDS |
| CAAAGCTGCACTCAAGAGCA+AGG | 0.561178 | 5:-20322385 | MsG0580025548.01.T01:CDS |
| TCATCGGTATTATGTGTGAT+CGG | 0.569387 | 5:-20321197 | MsG0580025548.01.T01:three_prime_UTR |
| TCCTGATGCAGACTCAGGCA+AGG | 0.574927 | 5:-20321358 | MsG0580025548.01.T01:CDS |
| GAAGGTCCTGATGCAGACTC+AGG | 0.576340 | 5:-20321363 | MsG0580025548.01.T01:CDS |
| CTAGAGAAGTGATTCACTAA+GGG | 0.578373 | 5:-20321274 | MsG0580025548.01.T01:three_prime_UTR |
| GTTGGACATGTGTTATAACT+AGG | 0.581816 | 5:-20322110 | MsG0580025548.01.T01:CDS |
| TCTGCAAGTGTGGTGAAGGA+TGG | 0.591787 | 5:-20321407 | MsG0580025548.01.T01:CDS |
| ACATTCTGCAAGTGTGGTGA+AGG | 0.593456 | 5:-20321411 | MsG0580025548.01.T01:CDS |
| CTTAGTGAATCACTTCTCTA+GGG | 0.599847 | 5:+20321276 | None:intergenic |
| ACAACACACTGCCCAAACCC+AGG | 0.603905 | 5:+20322148 | None:intergenic |
| ATTGAGAGTAGCAGTGACAA+TGG | 0.620823 | 5:-20321441 | MsG0580025548.01.T01:CDS |
| TTATATGCATGCAGTGATGG+TGG | 0.622136 | 5:-20321480 | MsG0580025548.01.T01:intron |
| GTGTGTGACATACAGTGTGC+AGG | 0.624270 | 5:+20322035 | None:intergenic |
| GTGTTGTGCAAGACTGGTAA+AGG | 0.626364 | 5:-20322132 | MsG0580025548.01.T01:CDS |
| CCTGATGCAGACTCAGGCAA+GGG | 0.633802 | 5:-20321357 | MsG0580025548.01.T01:CDS |
| AAAGCTGCACTCAAGAGCAA+GGG | 0.647133 | 5:-20322384 | MsG0580025548.01.T01:intron |
| TGTGCAAGACTGGTAAAGGT+TGG | 0.662647 | 5:-20322128 | MsG0580025548.01.T01:CDS |
| AGTGAAACATTCTGCAAGTG+TGG | 0.671634 | 5:-20321417 | MsG0580025548.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAAATTGTACTAAATT+TGG | - | Chr5:20322808-20322827 | MsG0580025548.01.T01:intron | 10.0% |
| !! | AAAACTATATAGATGAAATA+AGG | + | Chr5:20321736-20321755 | None:intergenic | 15.0% |
| !! | GATTTATTTATGTATGAAAA+TGG | + | Chr5:20321807-20321826 | None:intergenic | 15.0% |
| !! | TATTCTAATAGCAAAAATTA+TGG | + | Chr5:20321355-20321374 | None:intergenic | 15.0% |
| !!! | TTCAAGTTAATAAAATATCA+AGG | - | Chr5:20322784-20322803 | MsG0580025548.01.T01:intron | 15.0% |
| !!! | TTCATTTTTTAGATTGAATT+GGG | - | Chr5:20322191-20322210 | MsG0580025548.01.T01:CDS | 15.0% |
| !!! | TTTCATTTTTTAGATTGAAT+TGG | - | Chr5:20322190-20322209 | MsG0580025548.01.T01:CDS | 15.0% |
| !!! | TTTTATACACTACTAATAAA+TGG | + | Chr5:20321421-20321440 | None:intergenic | 15.0% |
| !!! | TTTTTAAAAATCGAATGAAT+TGG | - | Chr5:20322101-20322120 | MsG0580025548.01.T01:CDS | 15.0% |
| !!! | TTTTTTTTTCTTCTCTTTAT+TGG | - | Chr5:20321208-20321227 | MsG0580025548.01.T01:three_prime_UTR | 15.0% |
| !! | AATTGAACTCTAAATCAAAT+CGG | + | Chr5:20322323-20322342 | None:intergenic | 20.0% |
| !! | ATGATATCATTGTTAATGTT+TGG | - | Chr5:20321291-20321310 | MsG0580025548.01.T01:three_prime_UTR | 20.0% |
| !! | ATTAACTCTTGAGATAAAAT+CGG | - | Chr5:20322416-20322435 | MsG0580025548.01.T01:CDS | 20.0% |
| !! | GATGCTAGTAAAATTAAAAT+AGG | + | Chr5:20322034-20322053 | None:intergenic | 20.0% |
| !! | GTAAAATTAAAATAGGCAAA+AGG | + | Chr5:20322027-20322046 | None:intergenic | 20.0% |
| !! | TTTGTAATTAGTAATGTGTT+TGG | - | Chr5:20322881-20322900 | MsG0580025548.01.T01:intron | 20.0% |
| !!! | AATCAATTTTTTCTATCTCA+TGG | - | Chr5:20322484-20322503 | MsG0580025548.01.T01:intron | 20.0% |
| !!! | TACTAAATTTGGTTTATCAT+CGG | - | Chr5:20322819-20322838 | MsG0580025548.01.T01:intron | 20.0% |
| ! | AACTGAATATTAGAGTAGTA+TGG | + | Chr5:20321702-20321721 | None:intergenic | 25.0% |
| ! | AATGAAACTGCAAAGTAATA+AGG | + | Chr5:20322177-20322196 | None:intergenic | 25.0% |
| ! | ACTGAATATTAGAGTAGTAT+GGG | + | Chr5:20321701-20321720 | None:intergenic | 25.0% |
| ! | TAAAAATCGAATGAATTGGT+TGG | - | Chr5:20322105-20322124 | MsG0580025548.01.T01:CDS | 25.0% |
| ! | TAATAAAATTGCGATGAGAA+CGG | + | Chr5:20321090-20321109 | None:intergenic | 25.0% |
| !! | ATCTAGAAGTGCAATATATA+TGG | + | Chr5:20322520-20322539 | None:intergenic | 25.0% |
| AAAATGGAACAAGAGTAGTA+TGG | + | Chr5:20321791-20321810 | None:intergenic | 30.0% | |
| AAATGGAACAAGAGTAGTAT+GGG | + | Chr5:20321790-20321809 | None:intergenic | 30.0% | |
| AATAAGGATCAAATCGATTG+AGG | + | Chr5:20322161-20322180 | None:intergenic | 30.0% | |
| AATGTATCAACAAGTGAATG+AGG | + | Chr5:20321556-20321575 | None:intergenic | 30.0% | |
| ACTTTGAATCAGTTTCATGT+CGG | - | Chr5:20322392-20322411 | MsG0580025548.01.T01:CDS | 30.0% | |
| AGGTTCAATTATTGAGAAAG+AGG | - | Chr5:20321462-20321481 | MsG0580025548.01.T01:CDS | 30.0% | |
| ATTATATAAGCCTAGACTTG+TGG | + | Chr5:20322467-20322486 | None:intergenic | 30.0% | |
| CTCATATCATTGTGAGAATA+TGG | - | Chr5:20321619-20321638 | MsG0580025548.01.T01:intron | 30.0% | |
| GCTGTTTATGACTTTAAACA+TGG | - | Chr5:20321484-20321503 | MsG0580025548.01.T01:intron | 30.0% | |
| GTAATGCAATAGTATGTGTT+TGG | - | Chr5:20322919-20322938 | MsG0580025548.01.T01:intron | 30.0% | |
| GTCCAATTATTCATGATAGA+GGG | - | Chr5:20321506-20321525 | MsG0580025548.01.T01:intron | 30.0% | |
| TAGTTGTAATCCGATTGTTA+CGG | - | Chr5:20322286-20322305 | MsG0580025548.01.T01:intron | 30.0% | |
| TTCCCTCTATCATGAATAAT+TGG | + | Chr5:20321511-20321530 | None:intergenic | 30.0% | |
| ! | GGCAAAGTTTTTGTTAAATG+CGG | - | Chr5:20321963-20321982 | MsG0580025548.01.T01:intron | 30.0% |
| !! | GAAATTTTAAGAGACAACAG+AGG | + | Chr5:20322971-20322990 | None:intergenic | 30.0% |
| !! | GAAGCAGTATTTTTCAATCT+AGG | - | Chr5:20321442-20321461 | MsG0580025548.01.T01:CDS | 30.0% |
| AAGACTTCTACCGTAACAAT+CGG | + | Chr5:20322299-20322318 | None:intergenic | 35.0% | |
| AGACTTGTGGCAAATTTGAA+TGG | + | Chr5:20322454-20322473 | None:intergenic | 35.0% | |
| CACTGCATGCATATAAAAGT+TGG | + | Chr5:20322548-20322567 | None:intergenic | 35.0% | |
| CTAGAGAAGTGATTCACTAA+GGG | - | Chr5:20322758-20322777 | MsG0580025548.01.T01:intron | 35.0% | |
| CTTAGTGAATCACTTCTCTA+GGG | + | Chr5:20322759-20322778 | None:intergenic | 35.0% | |
| GAATATTAGAGTAGTATGGG+TGG | + | Chr5:20321698-20321717 | None:intergenic | 35.0% | |
| GGTCCAATTATTCATGATAG+AGG | - | Chr5:20321505-20321524 | MsG0580025548.01.T01:intron | 35.0% | |
| GTAGTTCAAGACAAAAACTC+AGG | - | Chr5:20321861-20321880 | MsG0580025548.01.T01:intron | 35.0% | |
| GTTGGACATGTGTTATAACT+AGG | - | Chr5:20321922-20321941 | MsG0580025548.01.T01:intron | 35.0% | |
| TCATCGGTATTATGTGTGAT+CGG | - | Chr5:20322835-20322854 | MsG0580025548.01.T01:intron | 35.0% | |
| TGTGTTATAACTAGGACTAC+TGG | - | Chr5:20321930-20321949 | MsG0580025548.01.T01:intron | 35.0% | |
| TTCAAATTTGCCACAAGTCT+AGG | - | Chr5:20322454-20322473 | MsG0580025548.01.T01:intron | 35.0% | |
| ! | AATGAATTGGTTGGTTCAAC+TGG | - | Chr5:20322114-20322133 | MsG0580025548.01.T01:CDS | 35.0% |
| ! | CTTTTATATGCATGCAGTGA+TGG | - | Chr5:20322549-20322568 | MsG0580025548.01.T01:intron | 35.0% |
| ! | TAAACCAATAAGCTTTGTGC+AGG | - | Chr5:20321832-20321851 | MsG0580025548.01.T01:intron | 35.0% |
| !! | GATGGAGTTGTTCCATTTTT+AGG | - | Chr5:20322643-20322662 | MsG0580025548.01.T01:intron | 35.0% |
| !!! | TGTTCCATTTTTAGGACTGA+AGG | - | Chr5:20322651-20322670 | MsG0580025548.01.T01:intron | 35.0% |
| AAATCCACTTAGCCAGTGTT+TGG | + | Chr5:20321169-20321188 | None:intergenic | 40.0% | |
| ACAAAAACTTTGCCAGCATC+AGG | + | Chr5:20321957-20321976 | None:intergenic | 40.0% | |
| AGGACCTTCAGTCCTAAAAA+TGG | + | Chr5:20322658-20322677 | None:intergenic | 40.0% | |
| AGTGAAACATTCTGCAAGTG+TGG | - | Chr5:20322615-20322634 | MsG0580025548.01.T01:intron | 40.0% | |
| ATTGAGAGTAGCAGTGACAA+TGG | - | Chr5:20322591-20322610 | MsG0580025548.01.T01:intron | 40.0% | |
| CCTAGAGAAGTGATTCACTA+AGG | - | Chr5:20322757-20322776 | MsG0580025548.01.T01:intron | 40.0% | |
| CCTTAGTGAATCACTTCTCT+AGG | + | Chr5:20322760-20322779 | None:intergenic | 40.0% | |
| CTTTCCTGCACAAAGCTTAT+TGG | + | Chr5:20321839-20321858 | None:intergenic | 40.0% | |
| TCACTGCTACTCTCAATTTC+AGG | + | Chr5:20322588-20322607 | None:intergenic | 40.0% | |
| TGTGTGATCGGCTATGAATT+TGG | - | Chr5:20322847-20322866 | MsG0580025548.01.T01:intron | 40.0% | |
| TTATATGCATGCAGTGATGG+TGG | - | Chr5:20322552-20322571 | MsG0580025548.01.T01:intron | 40.0% | |
| ! | ATAAGCTTTGTGCAGGAAAG+TGG | - | Chr5:20321839-20321858 | MsG0580025548.01.T01:intron | 40.0% |
| ! | TCACTTCTCTAGGGACAATT+TGG | + | Chr5:20322750-20322769 | None:intergenic | 40.0% |
| AAAAACTCAGGCCTGGGTTT+GGG | - | Chr5:20321873-20321892 | MsG0580025548.01.T01:intron | 45.0% | |
| AAAGCTGCACTCAAGAGCAA+GGG | - | Chr5:20321648-20321667 | MsG0580025548.01.T01:intron | 45.0% | |
| ACATTCTGCAAGTGTGGTGA+AGG | - | Chr5:20322621-20322640 | MsG0580025548.01.T01:intron | 45.0% | |
| CAAGACAAAAACTCAGGCCT+GGG | - | Chr5:20321867-20321886 | MsG0580025548.01.T01:intron | 45.0% | |
| GAGGTAGAGCCTTGAAAAGT+CGG | + | Chr5:20321537-20321556 | None:intergenic | 45.0% | |
| GTGTTGTGCAAGACTGGTAA+AGG | - | Chr5:20321900-20321919 | MsG0580025548.01.T01:intron | 45.0% | |
| TCAAGACAAAAACTCAGGCC+TGG | - | Chr5:20321866-20321885 | MsG0580025548.01.T01:intron | 45.0% | |
| TGGAACAAGAGTAGTATGGG+TGG | + | Chr5:20321787-20321806 | None:intergenic | 45.0% | |
| TGTGCAAGACTGGTAAAGGT+TGG | - | Chr5:20321904-20321923 | MsG0580025548.01.T01:intron | 45.0% | |
| TTGCTCTTGAGTGCAGCTTT+GGG | + | Chr5:20321648-20321667 | None:intergenic | 45.0% | |
| ! | AGGGAAGTTCCGACTTTTCA+AGG | - | Chr5:20321525-20321544 | MsG0580025548.01.T01:intron | 45.0% |
| !!! | ATTTTTAATCTTAAATTTAT+CGG | + | Chr5:20322355-20322374 | None:intergenic | 5.0% |
| ATCACTGCTGCACCAAACAC+TGG | - | Chr5:20321154-20321173 | MsG0580025548.01.T01:three_prime_UTR | 50.0% | |
| CAAAAACTCAGGCCTGGGTT+TGG | - | Chr5:20321872-20321891 | MsG0580025548.01.T01:intron | 50.0% | |
| CAAAGCTGCACTCAAGAGCA+AGG | - | Chr5:20321647-20321666 | MsG0580025548.01.T01:intron | 50.0% | |
| CTTGCTCTTGAGTGCAGCTT+TGG | + | Chr5:20321649-20321668 | None:intergenic | 50.0% | |
| GTGTGTGACATACAGTGTGC+AGG | + | Chr5:20322000-20322019 | None:intergenic | 50.0% | |
| TCTGCAAGTGTGGTGAAGGA+TGG | - | Chr5:20322625-20322644 | MsG0580025548.01.T01:intron | 50.0% | |
| ! | TGCACCAAACACTGGCTAAG+TGG | - | Chr5:20321162-20321181 | MsG0580025548.01.T01:three_prime_UTR | 50.0% |
| ACAACACACTGCCCAAACCC+AGG | + | Chr5:20321887-20321906 | None:intergenic | 55.0% | |
| ACGGCATCGTAACGCGAGAT+TGG | + | Chr5:20321071-20321090 | None:intergenic | 55.0% | |
| AGGACTACTGGACCTGATGC+TGG | - | Chr5:20321942-20321961 | MsG0580025548.01.T01:intron | 55.0% | |
| CCTGATGCAGACTCAGGCAA+GGG | - | Chr5:20322675-20322694 | MsG0580025548.01.T01:intron | 55.0% | |
| GAAGGTCCTGATGCAGACTC+AGG | - | Chr5:20322669-20322688 | MsG0580025548.01.T01:intron | 55.0% | |
| GGCAGTGTGTTGTGCAAGAC+TGG | - | Chr5:20321894-20321913 | MsG0580025548.01.T01:intron | 55.0% | |
| TCCTGATGCAGACTCAGGCA+AGG | - | Chr5:20322674-20322693 | MsG0580025548.01.T01:intron | 55.0% | |
| CCCTTGCCTGAGTCTGCATC+AGG | + | Chr5:20322678-20322697 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 20321044 | 20323010 | 20321044 | ID=MsG0580025548.01;Name=MsG0580025548.01 |
| Chr5 | mRNA | 20321044 | 20323010 | 20321044 | ID=MsG0580025548.01.T01;Parent=MsG0580025548.01;Name=MsG0580025548.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0.33|0.25|1|0.33|0.25|4|267|139 |
| Chr5 | exon | 20321044 | 20321488 | 20321044 | ID=MsG0580025548.01.T01:exon:8896;Parent=MsG0580025548.01.T01 |
| Chr5 | exon | 20322048 | 20322210 | 20322048 | ID=MsG0580025548.01.T01:exon:8895;Parent=MsG0580025548.01.T01 |
| Chr5 | exon | 20322385 | 20322456 | 20322385 | ID=MsG0580025548.01.T01:exon:8894;Parent=MsG0580025548.01.T01 |
| Chr5 | exon | 20323004 | 20323010 | 20323004 | ID=MsG0580025548.01.T01:exon:8893;Parent=MsG0580025548.01.T01 |
| Chr5 | CDS | 20323004 | 20323010 | 20323004 | ID=MsG0580025548.01.T01:cds;Parent=MsG0580025548.01.T01 |
| Chr5 | CDS | 20322385 | 20322456 | 20322385 | ID=MsG0580025548.01.T01:cds;Parent=MsG0580025548.01.T01 |
| Chr5 | CDS | 20322048 | 20322210 | 20322048 | ID=MsG0580025548.01.T01:cds;Parent=MsG0580025548.01.T01 |
| Chr5 | CDS | 20321311 | 20321488 | 20321311 | ID=MsG0580025548.01.T01:cds;Parent=MsG0580025548.01.T01 |
| Chr5 | three_prime_UTR | 20321044 | 20321310 | 20321044 | ID=MsG0580025548.01.T01:three_prime_utr;Parent=MsG0580025548.01.T01 |
| Gene Sequence |
| Protein sequence |
