AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025666.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025666.01.T01 MTR_5g032570 97.345 113 3 0 41 153 261 373 8.87e-71 224
MsG0580025666.01.T01 MTR_5g032570 61.290 62 17 1 7 68 99 153 2.38e-15 74.3
MsG0580025666.01.T01 MTR_8g069040 91.150 113 10 0 41 153 257 369 4.79e-69 219
MsG0580025666.01.T01 MTR_1g090300 60.504 119 47 0 41 159 243 361 2.34e-45 157
MsG0580025666.01.T01 MTR_2g100710 53.061 147 67 1 15 159 148 294 4.45e-44 151
MsG0580025666.01.T01 MTR_8g102190 58.824 119 49 0 41 159 176 294 4.81e-44 151
MsG0580025666.01.T01 MTR_8g102190 58.824 119 49 0 41 159 176 294 6.12e-44 151
MsG0580025666.01.T01 MTR_3g110395 57.983 119 50 0 41 159 177 295 6.37e-44 153
MsG0580025666.01.T01 MTR_6g090130 58.824 119 49 0 41 159 173 291 6.62e-44 153
MsG0580025666.01.T01 MTR_2g100710 53.020 149 64 3 15 159 148 294 1.83e-43 151
MsG0580025666.01.T01 MTR_8g102190 58.824 119 49 0 41 159 176 294 2.13e-43 151
MsG0580025666.01.T01 MTR_4g134290 48.739 119 61 0 41 159 180 298 9.68e-36 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025666.01.T01 AT2G22480 79.389 131 26 1 41 170 265 395 1.64e-67 216
MsG0580025666.01.T01 AT5G56630 59.664 119 48 0 41 159 176 294 3.49e-45 156
MsG0580025666.01.T01 AT4G32840 61.345 119 46 0 41 159 177 295 5.86e-45 155
MsG0580025666.01.T01 AT4G26270 60.504 119 47 0 41 159 176 294 6.55e-45 155
MsG0580025666.01.T01 AT4G29220 58.824 119 49 0 41 159 177 295 4.31e-44 153
MsG0580025666.01.T01 AT5G61580 56.303 119 52 0 41 159 227 345 5.35e-42 149
MsG0580025666.01.T01 AT5G61580 56.303 119 52 0 41 159 227 345 5.45e-42 149
MsG0580025666.01.T01 AT5G47810 49.565 115 58 0 45 159 165 279 2.61e-33 124

Find 42 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTACATACCTCGGGAATT+AGG 0.276615 5:+22278740 None:intergenic
AATCGGGATTGTGAAATTAA+TGG 0.277060 5:-22278824 MsG0580025666.01.T01:CDS
CCATGGAAGTCTCTAGTTAT+AGG 0.279905 5:+22281644 None:intergenic
CTATTGATGGACAAAACTTT+TGG 0.291628 5:-22279016 MsG0580025666.01.T01:CDS
CAGGTTCATGGTGCATTTGC+TGG 0.297347 5:-22276799 MsG0580025666.01.T01:CDS
CGGATCAAAGTGTGTGTTAT+AGG 0.297464 5:-22279067 MsG0580025666.01.T01:CDS
TTCCATGGGAATTATGATTC+TGG 0.345307 5:-22281629 MsG0580025666.01.T01:CDS
GCTTTGGTATTACAGGTTCA+TGG 0.359023 5:-22276811 MsG0580025666.01.T01:intron
CTCTTTGTGTTGGGTGGAAA+TGG 0.365286 5:-22279309 MsG0580025666.01.T01:CDS
AGACAATGATATTCTATTGA+TGG 0.383675 5:-22279029 MsG0580025666.01.T01:CDS
TTGATCCAACATACATGATT+CGG 0.395697 5:-22277891 MsG0580025666.01.T01:CDS
ATCAACATGCTCTTTGTGTT+GGG 0.422869 5:-22279318 MsG0580025666.01.T01:CDS
ATCGGGATTGTGAAATTAAT+GGG 0.439443 5:-22278823 MsG0580025666.01.T01:CDS
TGATCCAACATACATGATTC+GGG 0.446659 5:-22277890 MsG0580025666.01.T01:CDS
CATAGTGCATATCACGGAAT+CGG 0.458640 5:-22278841 MsG0580025666.01.T01:CDS
AATAAATTCTGCATATATAG+AGG 0.477305 5:-22278960 MsG0580025666.01.T01:intron
GGTGCATTTGCTGGATATAG+TGG 0.480453 5:-22276790 MsG0580025666.01.T01:CDS
GATCAACATGCTCTTTGTGT+TGG 0.483619 5:-22279319 MsG0580025666.01.T01:CDS
GTTGATTGATTGCAGGAAAG+AGG 0.494138 5:-22279342 MsG0580025666.01.T01:intron
ATAGTGCATATCACGGAATC+GGG 0.505089 5:-22278840 MsG0580025666.01.T01:CDS
TAATGACAGAGTGCTTCTTA+AGG 0.510674 5:-22281579 MsG0580025666.01.T01:intron
ATCAATCTGTCCACTAGCTA+AGG 0.518760 5:+22278768 None:intergenic
TTGATTGATTGCAGGAAAGA+GGG 0.531805 5:-22279341 MsG0580025666.01.T01:intron
ATTATGATTCTGGTGAGGAA+TGG 0.538440 5:-22281619 MsG0580025666.01.T01:CDS
AAATTAATGGGCCGTAGCAG+TGG 0.542200 5:-22278811 MsG0580025666.01.T01:CDS
AACATGCTCTTTGTGTTGGG+TGG 0.552403 5:-22279315 MsG0580025666.01.T01:CDS
CACCAGAATCATAATTCCCA+TGG 0.554608 5:+22281627 None:intergenic
GGTGGAAATGGTACACATGC+TGG 0.556073 5:-22279297 MsG0580025666.01.T01:CDS
CATGCCCGAATCATGTATGT+TGG 0.561157 5:+22277886 None:intergenic
GGATATAGTGGCATTACAGT+AGG 0.561938 5:-22276778 None:intergenic
ATGCAATCATCCTTAGCTAG+TGG 0.577715 5:-22278778 MsG0580025666.01.T01:CDS
TTGCTATGAATCCACTGCTA+CGG 0.580298 5:+22278800 None:intergenic
TGTCGAGCAAATGCATCAGA+TGG 0.581648 5:-22277865 MsG0580025666.01.T01:CDS
CCTATAACTAGAGACTTCCA+TGG 0.595568 5:-22281644 MsG0580025666.01.T01:CDS
TCTCTGTGCTTCTTCAACCG+CGG 0.616533 5:+22278985 None:intergenic
GATTCTGGTGAGGAATGGAA+TGG 0.617100 5:-22281614 MsG0580025666.01.T01:CDS
TAGGCGCATAGTGCATATCA+CGG 0.649368 5:-22278847 MsG0580025666.01.T01:CDS
CTATAACTAGAGACTTCCAT+GGG 0.651939 5:-22281643 MsG0580025666.01.T01:CDS
TGATGTATGCCTAATTCCCG+AGG 0.666643 5:-22278749 MsG0580025666.01.T01:intron
GCACTGTTCTTGGACAAATG+CGG 0.678073 5:-22277834 MsG0580025666.01.T01:intron
TGGGAATTATGATTCTGGTG+AGG 0.678389 5:-22281624 MsG0580025666.01.T01:CDS
TGCAAATGCAATTCACGACG+AGG 0.685123 5:-22279274 MsG0580025666.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATATAAAATAAAAATCA+CGG + Chr5:22279096-22279115 None:intergenic 10.0%
!! TTCAATAATATTTACATATA+TGG + Chr5:22281083-22281102 None:intergenic 10.0%
!!! AAAAAATCTGAATTTTTTTT+AGG - Chr5:22278243-22278262 MsG0580025666.01.T01:intron 10.0%
!!! AAAAATCTGAATTTTTTTTA+GGG - Chr5:22278244-22278263 MsG0580025666.01.T01:intron 10.0%
!! AAATGCAATTAACTAATATA+AGG + Chr5:22279229-22279248 None:intergenic 15.0%
!! AATCAATTTCATTAATAGAA+TGG + Chr5:22279010-22279029 None:intergenic 15.0%
!! AATGCAATTAACTAATATAA+GGG + Chr5:22279228-22279247 None:intergenic 15.0%
!! ATTAAATAGAAAACAATACT+GGG + Chr5:22279560-22279579 None:intergenic 15.0%
!! TAGAATTAACATAAAAACAA+GGG - Chr5:22280261-22280280 MsG0580025666.01.T01:intron 15.0%
!! TATTAAATAGAAAACAATAC+TGG + Chr5:22279561-22279580 None:intergenic 15.0%
!!! TATGATTTCACTTTTATTAT+TGG - Chr5:22280695-22280714 MsG0580025666.01.T01:intron 15.0%
!! AATAAATTCTGCATATATAG+AGG - Chr5:22279502-22279521 MsG0580025666.01.T01:intron 20.0%
!! AGTTTATGCTTTATAAGATT+GGG - Chr5:22281249-22281268 MsG0580025666.01.T01:intron 20.0%
!! ATAAAATATATAGCTAGAAG+TGG + Chr5:22280971-22280990 None:intergenic 20.0%
!! ATCATACATATATACAACAA+TGG + Chr5:22280681-22280700 None:intergenic 20.0%
!! ATTAATATACAGACTGAATT+AGG + Chr5:22278009-22278028 None:intergenic 20.0%
!! CTAGAATTAACATAAAAACA+AGG - Chr5:22280260-22280279 MsG0580025666.01.T01:intron 20.0%
!! TAGTTTATGCTTTATAAGAT+TGG - Chr5:22281248-22281267 MsG0580025666.01.T01:intron 20.0%
!! TCATACATATATACAACAAT+GGG + Chr5:22280680-22280699 None:intergenic 20.0%
!! TGAATATTTACAATAAACTG+TGG - Chr5:22281113-22281132 MsG0580025666.01.T01:intron 20.0%
!! TTGTAATCTATGATTTCTTA+AGG - Chr5:22279261-22279280 MsG0580025666.01.T01:intron 20.0%
!!! AAATCTCTTTCAAAAGTTTT+TGG - Chr5:22278469-22278488 MsG0580025666.01.T01:intron 20.0%
!!! AACTATTGTTCATAATTTTC+CGG + Chr5:22278115-22278134 None:intergenic 20.0%
!!! ATATCATTGTCTATAGTTTT+CGG + Chr5:22279425-22279444 None:intergenic 20.0%
!!! CTGATGAATGATATATTTTT+CGG + Chr5:22279995-22280014 None:intergenic 20.0%
!!! GTAGATATTGATATTGTTTT+AGG - Chr5:22277173-22277192 MsG0580025666.01.T01:intron 20.0%
!!! TAAGTTTTTTAGTAGTTTCT+GGG - Chr5:22278534-22278553 MsG0580025666.01.T01:intron 20.0%
!!! TACATTTTCATCCTTATAAT+GGG + Chr5:22281000-22281019 None:intergenic 20.0%
!!! TTAAGTTTTTTAGTAGTTTC+TGG - Chr5:22278533-22278552 MsG0580025666.01.T01:intron 20.0%
!!! TTTTTCGGAAAAAAAAATTC+AGG + Chr5:22279980-22279999 None:intergenic 20.0%
! AAGTACCTTATAGAATCAAA+GGG - Chr5:22279861-22279880 MsG0580025666.01.T01:intron 25.0%
! AATTCCTTCACAAATTTCTA+TGG - Chr5:22277045-22277064 MsG0580025666.01.T01:intron 25.0%
! ACAACTTGTGTTAAATACTA+CGG + Chr5:22281439-22281458 None:intergenic 25.0%
! AGACAAATATTACTTCTGTA+TGG + Chr5:22279036-22279055 None:intergenic 25.0%
! AGACAATGATATTCTATTGA+TGG - Chr5:22279433-22279452 MsG0580025666.01.T01:intron 25.0%
! ATATCTAGTTGTTGGAAATT+CGG - Chr5:22281389-22281408 MsG0580025666.01.T01:intron 25.0%
! ATTAAAACATTGTTCGTTCT+TGG - Chr5:22277677-22277696 MsG0580025666.01.T01:intron 25.0%
! ATTAACATAAAAACAAGGGA+TGG - Chr5:22280265-22280284 MsG0580025666.01.T01:intron 25.0%
! CATTATAAGGATGAAAATGT+AGG - Chr5:22280999-22281018 MsG0580025666.01.T01:intron 25.0%
! GGTTGAAACTTAATGAAAAT+TGG - Chr5:22280182-22280201 MsG0580025666.01.T01:intron 25.0%
! GTAATCACACTTGAAATATA+TGG - Chr5:22278686-22278705 MsG0580025666.01.T01:intron 25.0%
! GTGCTTACAATAATGTAAAT+GGG - Chr5:22280161-22280180 MsG0580025666.01.T01:intron 25.0%
! GTTTGATACTTCATCTATAT+AGG + Chr5:22280227-22280246 None:intergenic 25.0%
! TCAGACGAAAAATTATTTCA+AGG - Chr5:22280518-22280537 MsG0580025666.01.T01:intron 25.0%
! TCGAATAGATAAATTGATAC+AGG - Chr5:22279775-22279794 MsG0580025666.01.T01:intron 25.0%
! TTACAATAAACTGTGGTAAA+TGG - Chr5:22281120-22281139 MsG0580025666.01.T01:intron 25.0%
! TTTATACTTCACCCATTATA+AGG - Chr5:22280986-22281005 MsG0580025666.01.T01:intron 25.0%
!! AATTCATTGTTGTTAAATGG+CGG + Chr5:22277119-22277138 None:intergenic 25.0%
!! CTACATTTTCATCCTTATAA+TGG + Chr5:22281001-22281020 None:intergenic 25.0%
!! CTTTTAACAGAAGTAAAACT+AGG + Chr5:22280410-22280429 None:intergenic 25.0%
!! GTATCTATATCGATGATTTT+TGG + Chr5:22276993-22277012 None:intergenic 25.0%
!! GTCAATTCATTGTTGTTAAA+TGG + Chr5:22277122-22277141 None:intergenic 25.0%
!! TAGATGCTATTTAACAACTT+TGG + Chr5:22280788-22280807 None:intergenic 25.0%
!! TATATTTCCTATATTTTCCG+AGG + Chr5:22278284-22278303 None:intergenic 25.0%
!! TCTTAAGGAAATCATCTTTT+TGG - Chr5:22279276-22279295 MsG0580025666.01.T01:CDS 25.0%
!! TTAAGGTAGTTTGCATTATT+TGG - Chr5:22276900-22276919 MsG0580025666.01.T01:intron 25.0%
!! TTTTTAACAGCTGAAACAAA+CGG + Chr5:22278451-22278470 None:intergenic 25.0%
!!! AACTTTTAACTTACATACCT+CGG + Chr5:22279733-22279752 None:intergenic 25.0%
!!! AAGTTTTTTAGTAGTTTCTG+GGG - Chr5:22278535-22278554 MsG0580025666.01.T01:intron 25.0%
!!! GAATCAATTGTTGTTTAGAA+GGG + Chr5:22278795-22278814 None:intergenic 25.0%
!!! GATATTGATATTGTTTTAGG+TGG - Chr5:22277176-22277195 MsG0580025666.01.T01:intron 25.0%
!!! GATGGTGATTTTAATATTCT+TGG - Chr5:22280283-22280302 MsG0580025666.01.T01:intron 25.0%
!!! GTTGTGTTTATTATTTTGTG+TGG - Chr5:22281301-22281320 MsG0580025666.01.T01:intron 25.0%
!!! TGTTATTCGATATTGATTCT+CGG - Chr5:22281629-22281648 MsG0580025666.01.T01:CDS 25.0%
AAATCTTTACCCGTCTTAAT+AGG - Chr5:22279596-22279615 MsG0580025666.01.T01:intron 30.0%
AAGGTTCCTTTCAATTTACA+TGG - Chr5:22279814-22279833 MsG0580025666.01.T01:intron 30.0%
AATAATAGCAAACCTCTTGT+TGG + Chr5:22280133-22280152 None:intergenic 30.0%
AATCGGGATTGTGAAATTAA+TGG - Chr5:22279638-22279657 MsG0580025666.01.T01:intron 30.0%
AATGCTAAACTTGGAGATAT+CGG - Chr5:22280098-22280117 MsG0580025666.01.T01:intron 30.0%
AGACATAGCATGATTTACAA+GGG + Chr5:22281175-22281194 None:intergenic 30.0%
ATCGGGATTGTGAAATTAAT+GGG - Chr5:22279639-22279658 MsG0580025666.01.T01:intron 30.0%
CAAGTACCTTATAGAATCAA+AGG - Chr5:22279860-22279879 MsG0580025666.01.T01:intron 30.0%
CAATCATATTGTCTTCTTTG+TGG - Chr5:22277282-22277301 MsG0580025666.01.T01:intron 30.0%
CGATTATTTATTACCCGAAA+CGG + Chr5:22277392-22277411 None:intergenic 30.0%
CTTCATGATGCCTATAATTT+GGG - Chr5:22278196-22278215 MsG0580025666.01.T01:intron 30.0%
GAATTTCCAACAACTAGATA+TGG + Chr5:22281390-22281409 None:intergenic 30.0%
GACGTTAACGAATATATTTG+AGG + Chr5:22278595-22278614 None:intergenic 30.0%
GGTGCTTACAATAATGTAAA+TGG - Chr5:22280160-22280179 MsG0580025666.01.T01:intron 30.0%
TAATTCTAGACATCTTACAG+TGG + Chr5:22280249-22280268 None:intergenic 30.0%
TACAAAAGACATTCAATGCA+AGG + Chr5:22277764-22277783 None:intergenic 30.0%
TACAAAATGTTGTCAAGTAG+TGG - Chr5:22277576-22277595 MsG0580025666.01.T01:intron 30.0%
TAGACATAGCATGATTTACA+AGG + Chr5:22281176-22281195 None:intergenic 30.0%
TATGCTTTATAAGATTGGGA+GGG - Chr5:22281253-22281272 MsG0580025666.01.T01:intron 30.0%
TCTTCATGATGCCTATAATT+TGG - Chr5:22278195-22278214 MsG0580025666.01.T01:intron 30.0%
TTAGTGAAATGTGGATAGTT+TGG - Chr5:22278969-22278988 MsG0580025666.01.T01:CDS 30.0%
TTATGCTTTATAAGATTGGG+AGG - Chr5:22281252-22281271 MsG0580025666.01.T01:intron 30.0%
TTGATCCAACATACATGATT+CGG - Chr5:22280571-22280590 MsG0580025666.01.T01:intron 30.0%
TTGTACTAAATAGCGTAACA+TGG + Chr5:22280848-22280867 None:intergenic 30.0%
TTTAGAGATGAACATTTCTC+CGG - Chr5:22278093-22278112 MsG0580025666.01.T01:intron 30.0%
! ATTGGTTCTCAATTCTCATA+TGG - Chr5:22280713-22280732 MsG0580025666.01.T01:intron 30.0%
! GATATACTGTTTTCAGTGAA+AGG - Chr5:22281051-22281070 MsG0580025666.01.T01:intron 30.0%
! GTATATTGTTGATTGATTGC+AGG - Chr5:22279113-22279132 MsG0580025666.01.T01:intron 30.0%
! TAACGTCATGTACGTTTTAT+TGG - Chr5:22278608-22278627 MsG0580025666.01.T01:intron 30.0%
! TCTAAAGCAGCAATCTTATA+TGG + Chr5:22281225-22281244 None:intergenic 30.0%
! TGCTATTTAACAACTTTGGT+CGG + Chr5:22280784-22280803 None:intergenic 30.0%
! TTGATTCTATAAGGTACTTG+AGG + Chr5:22279860-22279879 None:intergenic 30.0%
! TTTGAAGTAAATTCTGCATC+AGG + Chr5:22280054-22280073 None:intergenic 30.0%
!! AATACAACAGTTCTAAAACG+CGG + Chr5:22280886-22280905 None:intergenic 30.0%
!! AGAAAAAGCATTAAAGACAG+TGG + Chr5:22281280-22281299 None:intergenic 30.0%
!! ATTGCAAGCAACTTGTTTTT+CGG - Chr5:22278046-22278065 MsG0580025666.01.T01:intron 30.0%
!! CGAATCAATTGTTGTTTAGA+AGG + Chr5:22278796-22278815 None:intergenic 30.0%
!! CGATCAAATTGTTTCTGATA+TGG - Chr5:22278394-22278413 MsG0580025666.01.T01:intron 30.0%
!! CTATTGATGGACAAAACTTT+TGG - Chr5:22279446-22279465 MsG0580025666.01.T01:intron 30.0%
!! GGTTTGCTATTATTTGCTTA+TGG - Chr5:22280139-22280158 MsG0580025666.01.T01:intron 30.0%
!!! ACTTTTAACTTACATACCTC+GGG + Chr5:22279732-22279751 None:intergenic 30.0%
AAAAATGATACCGATGCTTC+AGG - Chr5:22280074-22280093 MsG0580025666.01.T01:intron 35.0%
AAAATGATACCGATGCTTCA+GGG - Chr5:22280075-22280094 MsG0580025666.01.T01:intron 35.0%
AAAGCAGCAATCTTATATGG+AGG + Chr5:22281222-22281241 None:intergenic 35.0%
AAGTAGTCAATCACAGATAG+CGG + Chr5:22277655-22277674 None:intergenic 35.0%
ACTAGATATGGACACATAAG+TGG + Chr5:22281378-22281397 None:intergenic 35.0%
ATCAACATGCTCTTTGTGTT+GGG - Chr5:22279144-22279163 MsG0580025666.01.T01:intron 35.0%
ATCGAAATGAAGTGAAATGC+TGG - Chr5:22277790-22277809 MsG0580025666.01.T01:intron 35.0%
ATGCTAAACTTGGAGATATC+GGG - Chr5:22280099-22280118 MsG0580025666.01.T01:intron 35.0%
ATGTGTCCATATCTAGTTGT+TGG - Chr5:22281381-22281400 MsG0580025666.01.T01:intron 35.0%
ATTATGATTCTGGTGAGGAA+TGG - Chr5:22276843-22276862 MsG0580025666.01.T01:intron 35.0%
CAAACAGAAGATTCCACTTA+AGG + Chr5:22277427-22277446 None:intergenic 35.0%
CTATAACTAGAGACTTCCAT+GGG - Chr5:22276819-22276838 MsG0580025666.01.T01:intron 35.0%
CTATGTTTCCTTTCGAATCA+AGG - Chr5:22281577-22281596 MsG0580025666.01.T01:intron 35.0%
CTGATCCCTTTGATTCTATA+AGG + Chr5:22279869-22279888 None:intergenic 35.0%
CTTAAGTGGAATCTTCTGTT+TGG - Chr5:22277425-22277444 MsG0580025666.01.T01:intron 35.0%
CTTCAAACCAGAAGAAGTAA+AGG - Chr5:22278306-22278325 MsG0580025666.01.T01:intron 35.0%
GAACACGTGAAATATGATCA+TGG + Chr5:22281540-22281559 None:intergenic 35.0%
GAAGGGAAATATGAGATTAC+CGG + Chr5:22278778-22278797 None:intergenic 35.0%
GATTTCATTTACAGCTGTCA+AGG - Chr5:22278879-22278898 MsG0580025666.01.T01:intron 35.0%
GCTAGTCATACCCAAATTAT+AGG + Chr5:22278209-22278228 None:intergenic 35.0%
GGGAATTGTATTCTCATTCA+AGG + Chr5:22281330-22281349 None:intergenic 35.0%
GTGATGAATGGTATATTGTC+TGG + Chr5:22277915-22277934 None:intergenic 35.0%
GTTCAAAACATTCATCTCTC+AGG - Chr5:22278908-22278927 MsG0580025666.01.T01:intron 35.0%
TATAACTTCGTGTTTGAGGA+TGG - Chr5:22277331-22277350 MsG0580025666.01.T01:intron 35.0%
TATGGTGTAACTGAGATTGT+TGG - Chr5:22278704-22278723 MsG0580025666.01.T01:intron 35.0%
TCCTTCACAAATTTCTATGG+CGG - Chr5:22277048-22277067 MsG0580025666.01.T01:intron 35.0%
TCTTAACGATGTCATTAGAC+AGG - Chr5:22278363-22278382 MsG0580025666.01.T01:intron 35.0%
TGAGGTCCATGTAAATTGAA+AGG + Chr5:22279823-22279842 None:intergenic 35.0%
TGAGGTCTGCTAATAACTAA+GGG + Chr5:22278577-22278596 None:intergenic 35.0%
TGATCCAACATACATGATTC+GGG - Chr5:22280572-22280591 MsG0580025666.01.T01:intron 35.0%
TTCAATTTACATGGACCTCA+TGG - Chr5:22279823-22279842 MsG0580025666.01.T01:intron 35.0%
TTCCATGGGAATTATGATTC+TGG - Chr5:22276833-22276852 MsG0580025666.01.T01:intron 35.0%
TTGAGGTCTGCTAATAACTA+AGG + Chr5:22278578-22278597 None:intergenic 35.0%
TTGATTCAATGTTGTCGATG+CGG - Chr5:22276953-22276972 MsG0580025666.01.T01:intron 35.0%
TTGATTGATTGCAGGAAAGA+GGG - Chr5:22279121-22279140 MsG0580025666.01.T01:intron 35.0%
TTGTACTAAATAGCGTATCG+TGG + Chr5:22277561-22277580 None:intergenic 35.0%
! AACAACAAACATTTTGCAGC+CGG - Chr5:22281489-22281508 MsG0580025666.01.T01:intron 35.0%
! AACAGTAACCTTGATTCGAA+AGG + Chr5:22281588-22281607 None:intergenic 35.0%
! GAGATTGTTGGTATTCCTTT+TGG - Chr5:22278716-22278735 MsG0580025666.01.T01:intron 35.0%
! GGAATTTTATGCACTGTTCT+TGG - Chr5:22280618-22280637 MsG0580025666.01.T01:intron 35.0%
! GTTTTCAGTGCTGTAAAAGA+CGG - Chr5:22279375-22279394 MsG0580025666.01.T01:intron 35.0%
! GTTTTCTGACAAAGAGTTGA+TGG - Chr5:22278747-22278766 MsG0580025666.01.T01:intron 35.0%
! TAATGACAGAGTGCTTCTTA+AGG - Chr5:22276883-22276902 MsG0580025666.01.T01:intron 35.0%
!! AAAGAGTTGATGTGAACACA+AGG + Chr5:22280750-22280769 None:intergenic 35.0%
!! AAGCAACTTGTTTTTCGGAA+AGG - Chr5:22278051-22278070 MsG0580025666.01.T01:intron 35.0%
!! AGCAACTTGTTTTTCGGAAA+GGG - Chr5:22278052-22278071 MsG0580025666.01.T01:intron 35.0%
!! CAAAGAGTTGATGGAAATAC+CGG - Chr5:22278756-22278775 MsG0580025666.01.T01:CDS 35.0%
!! GTTTGGTTCTTGGTTGAAAA+TGG - Chr5:22277442-22277461 MsG0580025666.01.T01:intron 35.0%
!!! CTTGTTTTTGTGTGATGACA+GGG - Chr5:22276793-22276812 MsG0580025666.01.T01:CDS 35.0%
!!! TCTTGTTTTTGTGTGATGAC+AGG - Chr5:22276792-22276811 MsG0580025666.01.T01:CDS 35.0%
AACAATGGGCAAAGATAGAG+AGG + Chr5:22280666-22280685 None:intergenic 40.0%
AACTGTGGTAAATGGAACAC+TGG - Chr5:22281128-22281147 MsG0580025666.01.T01:intron 40.0%
ACTTACATACCTCGGGAATT+AGG + Chr5:22279725-22279744 None:intergenic 40.0%
AGTAGCAGTGTTGTCAATTG+TGG + Chr5:22280946-22280965 None:intergenic 40.0%
ATAGTGCATATCACGGAATC+GGG - Chr5:22279622-22279641 MsG0580025666.01.T01:intron 40.0%
ATCAACTATGCTTACGTCTC+CGG + Chr5:22281511-22281530 None:intergenic 40.0%
ATCAATCTGTCCACTAGCTA+AGG + Chr5:22279697-22279716 None:intergenic 40.0%
ATCCACATTTCACTAACTCC+AGG + Chr5:22278965-22278984 None:intergenic 40.0%
ATGAAGTGAAATGCTGGACT+TGG - Chr5:22277796-22277815 MsG0580025666.01.T01:intron 40.0%
ATGCAATCATCCTTAGCTAG+TGG - Chr5:22279684-22279703 MsG0580025666.01.T01:intron 40.0%
ATGGAACACTGGAGTACAAT+AGG - Chr5:22281139-22281158 MsG0580025666.01.T01:intron 40.0%
ATTGATACAGGTCCTATCTG+TGG - Chr5:22279787-22279806 MsG0580025666.01.T01:intron 40.0%
CAAAACATTCATCTCTCAGG+TGG - Chr5:22278911-22278930 MsG0580025666.01.T01:intron 40.0%
CACCAGAATCATAATTCCCA+TGG + Chr5:22276838-22276857 None:intergenic 40.0%
CAGCTATAACTTCGTGTTTG+AGG - Chr5:22277327-22277346 MsG0580025666.01.T01:intron 40.0%
CATAGTGCATATCACGGAAT+CGG - Chr5:22279621-22279640 MsG0580025666.01.T01:intron 40.0%
CCATGGAAGTCTCTAGTTAT+AGG + Chr5:22276821-22276840 None:intergenic 40.0%
CCTATAACTAGAGACTTCCA+TGG - Chr5:22276818-22276837 MsG0580025666.01.T01:intron 40.0%
CGCTATAACTAGCGAAGTTT+GGG - Chr5:22277519-22277538 MsG0580025666.01.T01:intron 40.0%
CGGATCAAAGTGTGTGTTAT+AGG - Chr5:22279395-22279414 MsG0580025666.01.T01:intron 40.0%
CTAATGACATCGTTAAGACC+AGG + Chr5:22278361-22278380 None:intergenic 40.0%
GACATTACAGCACTATTGTG+AGG - Chr5:22277604-22277623 MsG0580025666.01.T01:intron 40.0%
GATCAACATGCTCTTTGTGT+TGG - Chr5:22279143-22279162 MsG0580025666.01.T01:intron 40.0%
GCTCAAATTCTTGCCTTAAG+TGG - Chr5:22277411-22277430 MsG0580025666.01.T01:intron 40.0%
GCTTTGGTATTACAGGTTCA+TGG - Chr5:22281651-22281670 MsG0580025666.01.T01:CDS 40.0%
GTGAAATGTGGATAGTTTGG+AGG - Chr5:22278972-22278991 MsG0580025666.01.T01:CDS 40.0%
GTTGATTGATTGCAGGAAAG+AGG - Chr5:22279120-22279139 MsG0580025666.01.T01:intron 40.0%
TCGACAAAAGACAGAAAGCT+AGG + Chr5:22279759-22279778 None:intergenic 40.0%
TCGATATAGATACGCCATTG+CGG - Chr5:22277000-22277019 MsG0580025666.01.T01:intron 40.0%
TCGCTATAACTAGCGAAGTT+TGG - Chr5:22277518-22277537 MsG0580025666.01.T01:intron 40.0%
TGCTAAACTTGGAGATATCG+GGG - Chr5:22280100-22280119 MsG0580025666.01.T01:intron 40.0%
TGGGAATTATGATTCTGGTG+AGG - Chr5:22276838-22276857 MsG0580025666.01.T01:intron 40.0%
TTGCTATGAATCCACTGCTA+CGG + Chr5:22279665-22279684 None:intergenic 40.0%
TTTAGCATTCCCTGAAGCAT+CGG + Chr5:22280087-22280106 None:intergenic 40.0%
! ATTCTCGGCTTTGGTATTAC+AGG - Chr5:22281644-22281663 MsG0580025666.01.T01:CDS 40.0%
! CCATTTGCATTTTGTGCTTG+GGG + Chr5:22281350-22281369 None:intergenic 40.0%
! GCCATTTGCATTTTGTGCTT+GGG + Chr5:22281351-22281370 None:intergenic 40.0%
! TATGACTAGCGTAAAGCGTT+AGG - Chr5:22278219-22278238 MsG0580025666.01.T01:intron 40.0%
! TTGTTGTTAAATGGCGGTCA+TGG + Chr5:22277113-22277132 None:intergenic 40.0%
!! ACTTGTTTTTCGGAAAGGGA+AGG - Chr5:22278056-22278075 MsG0580025666.01.T01:intron 40.0%
!! CACAGATAGCGGAAAATAGA+AGG + Chr5:22277644-22277663 None:intergenic 40.0%
!! CTTGTTTTTCGGAAAGGGAA+GGG - Chr5:22278057-22278076 MsG0580025666.01.T01:intron 40.0%
!! GGAATCTTCTGTTTGGTTCT+TGG - Chr5:22277432-22277451 MsG0580025666.01.T01:intron 40.0%
!! TCGATATTGATTCTCGGCTT+TGG - Chr5:22281635-22281654 MsG0580025666.01.T01:CDS 40.0%
!! TGCCATTTGCATTTTGTGCT+TGG + Chr5:22281352-22281371 None:intergenic 40.0%
!! TTGTTTTTCGGAAAGGGAAG+GGG - Chr5:22278058-22278077 MsG0580025666.01.T01:intron 40.0%
!!! TTTTTTAGGGTTCATCGAGC+TGG - Chr5:22278257-22278276 MsG0580025666.01.T01:intron 40.0%
AACATGCTCTTTGTGTTGGG+TGG - Chr5:22279147-22279166 MsG0580025666.01.T01:intron 45.0%
AGAAAACCGCGATAGCCAAA+AGG + Chr5:22278734-22278753 None:intergenic 45.0%
AGCCTATTAGGAGTTTCACG+CGG - Chr5:22278935-22278954 MsG0580025666.01.T01:intron 45.0%
AGCTGGACCTCGGAAAATAT+AGG - Chr5:22278274-22278293 MsG0580025666.01.T01:intron 45.0%
AGGTCCTATCTGTGGTTCAA+AGG - Chr5:22279795-22279814 MsG0580025666.01.T01:intron 45.0%
ATGGCTGCCTTTACTTCTTC+TGG + Chr5:22278316-22278335 None:intergenic 45.0%
CACTATGCGCCTATTAAGAC+GGG + Chr5:22279608-22279627 None:intergenic 45.0%
CAGTCCTCCACAAGTAACAA+TGG + Chr5:22278335-22278354 None:intergenic 45.0%
CATGCCCGAATCATGTATGT+TGG + Chr5:22280579-22280598 None:intergenic 45.0%
CATTGATCCTGGCTGTAAGT+GGG - Chr5:22277956-22277975 MsG0580025666.01.T01:intron 45.0%
CCCCAAGCACAAAATGCAAA+TGG - Chr5:22281347-22281366 MsG0580025666.01.T01:intron 45.0%
CGGGGTTTATATCCAACAAG+AGG - Chr5:22280118-22280137 MsG0580025666.01.T01:intron 45.0%
CTCTTTGTGTTGGGTGGAAA+TGG - Chr5:22279153-22279172 MsG0580025666.01.T01:intron 45.0%
GACCTGGAGTTAGTGAAATG+TGG - Chr5:22278960-22278979 MsG0580025666.01.T01:intron 45.0%
GATTCTGGTGAGGAATGGAA+TGG - Chr5:22276848-22276867 MsG0580025666.01.T01:intron 45.0%
GCACTATGCGCCTATTAAGA+CGG + Chr5:22279609-22279628 None:intergenic 45.0%
GCACTGTTCTTGGACAAATG+CGG - Chr5:22280628-22280647 MsG0580025666.01.T01:intron 45.0%
GCCGCCATAGAAATTTGTGA+AGG + Chr5:22277052-22277071 None:intergenic 45.0%
GCGTATCGTGGAAAGAATAG+TGG + Chr5:22277549-22277568 None:intergenic 45.0%
GCTTCAGGGAATGCTAAACT+TGG - Chr5:22280089-22280108 MsG0580025666.01.T01:intron 45.0%
GGAACCTTTGAACCACAGAT+AGG + Chr5:22279802-22279821 None:intergenic 45.0%
GTGTTGTCAATTGTGGATCG+CGG + Chr5:22280939-22280958 None:intergenic 45.0%
GTTGTCGATGCGGAATATTG+TGG - Chr5:22276963-22276982 MsG0580025666.01.T01:intron 45.0%
TAGGCGCATAGTGCATATCA+CGG - Chr5:22279615-22279634 MsG0580025666.01.T01:intron 45.0%
TCAATTGTGGATCGCGGAAT+AGG + Chr5:22280933-22280952 None:intergenic 45.0%
TCGATGCGGAATATTGTGGA+AGG - Chr5:22276967-22276986 MsG0580025666.01.T01:intron 45.0%
TGATGTATGCCTAATTCCCG+AGG - Chr5:22279713-22279732 MsG0580025666.01.T01:intron 45.0%
TGCAAATGCAATTCACGACG+AGG - Chr5:22279188-22279207 MsG0580025666.01.T01:intron 45.0%
TGTCGAGCAAATGCATCAGA+TGG - Chr5:22280597-22280616 MsG0580025666.01.T01:intron 45.0%
! AAATTAATGGGCCGTAGCAG+TGG - Chr5:22279651-22279670 MsG0580025666.01.T01:intron 45.0%
! AAGGCAGCCATTGTTACTTG+TGG - Chr5:22278325-22278344 MsG0580025666.01.T01:intron 45.0%
! GGTGCATTTGCTGGATATAG+TGG - Chr5:22281672-22281691 MsG0580025666.01.T01:CDS 45.0%
!! GGTATTCCTTTTGGCTATCG+CGG - Chr5:22278725-22278744 MsG0580025666.01.T01:intron 45.0%
!!! AACTTTTGGCTTTGACACCG+CGG - Chr5:22279460-22279479 MsG0580025666.01.T01:intron 45.0%
!!! AGAATGGCATGGCGGTTTTT+TGG + Chr5:22277078-22277097 None:intergenic 45.0%
CAGGTTCATGGTGCATTTGC+TGG - Chr5:22281663-22281682 MsG0580025666.01.T01:CDS 50.0%
CCAGCAGATGAGGTGATGAA+TGG + Chr5:22277927-22277946 None:intergenic 50.0%
CCATTCATCACCTCATCTGC+TGG - Chr5:22277924-22277943 MsG0580025666.01.T01:CDS 50.0%
CTATTAGGAGTTTCACGCGG+AGG - Chr5:22278938-22278957 MsG0580025666.01.T01:intron 50.0%
CTCCGCGTGAAACTCCTAAT+AGG + Chr5:22278940-22278959 None:intergenic 50.0%
GAGGTGACTCAAACTCCATG+AGG + Chr5:22279841-22279860 None:intergenic 50.0%
GCTGTAAGTGGGTGGAACAA+TGG - Chr5:22277967-22277986 MsG0580025666.01.T01:intron 50.0%
GGTGGAAATGGTACACATGC+TGG - Chr5:22279165-22279184 MsG0580025666.01.T01:intron 50.0%
GTGGCAGTTCATAGCCGTTT+CGG - Chr5:22277375-22277394 MsG0580025666.01.T01:intron 50.0%
TCTCTGTGCTTCTTCAACCG+CGG + Chr5:22279480-22279499 None:intergenic 50.0%
TGCCACTAAAACACTTCGCG+AGG + Chr5:22277361-22277380 None:intergenic 50.0%
TGGCAGTTCATAGCCGTTTC+GGG - Chr5:22277376-22277395 MsG0580025666.01.T01:intron 50.0%
TTGTGAAGGAATTCCCGCCA+TGG + Chr5:22277038-22277057 None:intergenic 50.0%
! AGCTGTAGTTTGTGTGGCAG+AGG - Chr5:22279887-22279906 MsG0580025666.01.T01:intron 50.0%
! GCAGCCATTGTTACTTGTGG+AGG - Chr5:22278328-22278347 MsG0580025666.01.T01:intron 50.0%
! GCATTGATCCTGGCTGTAAG+TGG - Chr5:22277955-22277974 MsG0580025666.01.T01:intron 50.0%
! GCTGTAGTTTGTGTGGCAGA+GGG - Chr5:22279888-22279907 MsG0580025666.01.T01:intron 50.0%
! GGGATCAGCTGTAGTTTGTG+TGG - Chr5:22279881-22279900 MsG0580025666.01.T01:intron 50.0%
!! TGCCTCGCGAAGTGTTTTAG+TGG - Chr5:22277356-22277375 MsG0580025666.01.T01:intron 50.0%
ACTTGTGGAGGACTGTGTCC+TGG - Chr5:22278340-22278359 MsG0580025666.01.T01:intron 55.0%
AGATACGCCATTGCGGCATG+TGG - Chr5:22277007-22277026 MsG0580025666.01.T01:intron 55.0%
CTCTCAGGTGGCAGCCTATT+AGG - Chr5:22278923-22278942 MsG0580025666.01.T01:intron 55.0%
TGAAGGAATTCCCGCCATGG+TGG + Chr5:22277035-22277054 None:intergenic 55.0%
TGATCCTGGCTGTAAGTGGG+TGG - Chr5:22277959-22277978 MsG0580025666.01.T01:intron 55.0%
TGTTCCACCCACTTACAGCC+AGG + Chr5:22277966-22277985 None:intergenic 55.0%
ACCGCCATGCCATTCTGCCA+TGG - Chr5:22277082-22277101 MsG0580025666.01.T01:intron 60.0%
GCCATGCCATTCTGCCATGG+CGG - Chr5:22277085-22277104 MsG0580025666.01.T01:intron 60.0%
GCCATGGCAGAATGGCATGG+CGG + Chr5:22277086-22277105 None:intergenic 60.0%
GGGTTCATCGAGCTGGACCT+CGG - Chr5:22278264-22278283 MsG0580025666.01.T01:intron 60.0%
GTTTGTGTGGCAGAGGGAGC+AGG - Chr5:22279894-22279913 MsG0580025666.01.T01:intron 60.0%
! GGCGCTCAGTGCATTGATCC+TGG - Chr5:22277945-22277964 MsG0580025666.01.T01:intron 60.0%
ATGGCGCCGCCATGGCAGAA+TGG + Chr5:22277094-22277113 None:intergenic 65.0%
GCACTGAGCGCCAGCAGATG+AGG + Chr5:22277937-22277956 None:intergenic 65.0%
GCCGCCATGGCAGAATGGCA+TGG + Chr5:22277089-22277108 None:intergenic 65.0%
GGAGTTTCACGCGGAGGACC+TGG - Chr5:22278944-22278963 MsG0580025666.01.T01:intron 65.0%
TGTGGCAGAGGGAGCAGGAC+AGG - Chr5:22279899-22279918 MsG0580025666.01.T01:intron 65.0%
GCATGTGGCGCCACCATGGC+GGG - Chr5:22277022-22277041 MsG0580025666.01.T01:intron 70.0%
GGCATGTGGCGCCACCATGG+CGG - Chr5:22277021-22277040 MsG0580025666.01.T01:intron 70.0%
GGTGGCGCCACATGCCGCAA+TGG + Chr5:22277017-22277036 None:intergenic 70.0%
TGCGGCATGTGGCGCCACCA+TGG - Chr5:22277018-22277037 MsG0580025666.01.T01:intron 70.0%
TGGCGGTCATGGCGCCGCCA+TGG + Chr5:22277102-22277121 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 22276779 22281705 22276779 ID=MsG0580025666.01;Name=MsG0580025666.01
Chr5 mRNA 22276779 22281705 22276779 ID=MsG0580025666.01.T01;Parent=MsG0580025666.01;Name=MsG0580025666.01.T01;_AED=0.38;_eAED=0.42;_QI=0|0|0|1|1|1|6|0|208
Chr5 exon 22281580 22281705 22281580 ID=MsG0580025666.01.T01:exon:23895;Parent=MsG0580025666.01.T01
Chr5 exon 22279275 22279349 22279275 ID=MsG0580025666.01.T01:exon:23894;Parent=MsG0580025666.01.T01
Chr5 exon 22278961 22279101 22278961 ID=MsG0580025666.01.T01:exon:23893;Parent=MsG0580025666.01.T01
Chr5 exon 22278750 22278866 22278750 ID=MsG0580025666.01.T01:exon:23892;Parent=MsG0580025666.01.T01
Chr5 exon 22277835 22277962 22277835 ID=MsG0580025666.01.T01:exon:23891;Parent=MsG0580025666.01.T01
Chr5 exon 22276779 22276818 22276779 ID=MsG0580025666.01.T01:exon:23890;Parent=MsG0580025666.01.T01
Chr5 CDS 22281580 22281705 22281580 ID=MsG0580025666.01.T01:cds;Parent=MsG0580025666.01.T01
Chr5 CDS 22279275 22279349 22279275 ID=MsG0580025666.01.T01:cds;Parent=MsG0580025666.01.T01
Chr5 CDS 22278961 22279101 22278961 ID=MsG0580025666.01.T01:cds;Parent=MsG0580025666.01.T01
Chr5 CDS 22278750 22278866 22278750 ID=MsG0580025666.01.T01:cds;Parent=MsG0580025666.01.T01
Chr5 CDS 22277835 22277962 22277835 ID=MsG0580025666.01.T01:cds;Parent=MsG0580025666.01.T01
Chr5 CDS 22276779 22276818 22276779 ID=MsG0580025666.01.T01:cds;Parent=MsG0580025666.01.T01
Gene Sequence

>MsG0580025666.01.T01

ATGAAAATTATACTCTTGTTTTTGTGTGATGACAGGGCTCCTATAACTAGAGACTTCCATGGGAATTATGATTCTGGTGAGGAATGGAATGGATACATTAGTGATAATGACAGAGTGCTTCTTAAGGAAAGAGGGATCAACATGCTCTTTGTGTTGGGTGGAAATGGTACACATGCTGGTGCAAATGCAATTCACGACGAGTGCTGTAAAAGACGGATCAAAGTGTGTGTTATAGGAGTGCCGAAAACTATAGACAATGATATTCTATTGATGGACAAAACTTTTGGCTTTGACACCGCGGTTGAAGAAGCACAGAGAGCAATAAATTCTGCATATATAGAGGCGCATAGTGCATATCACGGAATCGGGATTGTGAAATTAATGGGCCGTAGCAGTGGATTCATAGCAATGCAATCATCCTTAGCTAGTGGACAGATTGATGTATGCCTAATTCCCGAGACGAAAAATTATTTCAAGGAGAATGATATTCATGCTGATGTGAAATATATTGATCCAACATACATGATTCGGGCATGTCGAGCAAATGCATCAGATGGAATTTTATGCACTGTTCTTGGACAAATGCGGTTCATGGTGCATTTGCTGGATATAGTGGCATTACAGTAG

Protein sequence

>MsG0580025666.01.T01

MKIILLFLCDDRAPITRDFHGNYDSGEEWNGYISDNDRVLLKERGINMLFVLGGNGTHAGANAIHDECCKRRIKVCVIGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGFIAMQSSLASGQIDVCLIPETKNYFKENDIHADVKYIDPTYMIRACRANASDGILCTVLGQMRFMVHLLDIVALQ*