AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021426.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021426.01.T01 MTR_4g074140 85.271 258 23 3 1 256 1 245 3.60e-147 411
MsG0480021426.01.T01 MTR_4g074140 85.271 258 23 3 1 256 6 250 4.04e-147 411
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 76 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTCTAGTGCAAAATTTA+AGG 0.189930 4:+57745930 MsG0480021426.01.T01:CDS
GTGGCCGGAAATTGCCAATT+TGG 0.274884 4:-57746480 None:intergenic
TGAGCCAAATTGGCAATTTC+CGG 0.286882 4:+57746476 MsG0480021426.01.T01:CDS
GTCATTGATGGCATTGCTTA+TGG 0.303010 4:+57745754 MsG0480021426.01.T01:CDS
AGTGCAAAATTTAAGGTTAA+GGG 0.312286 4:+57745937 MsG0480021426.01.T01:CDS
TCAATGACGCTGACGCTAAC+TGG 0.319388 4:-57745739 None:intergenic
AGCTCTATCCTTCGATTTGA+TGG 0.320533 4:-57746028 None:intergenic
TAGTGCAAAATTTAAGGTTA+AGG 0.321474 4:+57745936 MsG0480021426.01.T01:CDS
ACAATAATTGCTGTATTTGA+TGG 0.326433 4:+57746929 MsG0480021426.01.T01:three_prime_UTR
TATAATTCTTCTCCAACAAC+TGG 0.336190 4:+57746576 MsG0480021426.01.T01:CDS
GCAGACAGTGTGAGCCAAAT+TGG 0.345546 4:+57746466 MsG0480021426.01.T01:CDS
TTTGATGGCCATTGCAGAAC+AGG 0.350980 4:+57746167 MsG0480021426.01.T01:CDS
AGATATGTTGGACGTCTTCT+TGG 0.352253 4:+57746644 MsG0480021426.01.T01:CDS
CATTGCCGGAGTCACTTTCA+TGG 0.376665 4:-57745813 None:intergenic
AAAGAAACGCGGAAATTTAG+AGG 0.388630 4:+57746065 MsG0480021426.01.T01:CDS
GAAAGTCAAAATGAACTTGT+TGG 0.395907 4:+57746771 MsG0480021426.01.T01:three_prime_UTR
CCTATTTGAGATGTGCTTGT+AGG 0.401685 4:-57746609 None:intergenic
AGAACCACTTGTACATGAAC+GGG 0.407641 4:+57745249 MsG0480021426.01.T01:five_prime_UTR
CCTTTGAGAAGGAGGAGAAC+TGG 0.414219 4:+57746683 MsG0480021426.01.T01:exon
TTTAGACCAACGGAATGAAA+TGG 0.418812 4:+57745969 MsG0480021426.01.T01:CDS
GATATGTTGGACGTCTTCTT+GGG 0.420094 4:+57746645 MsG0480021426.01.T01:CDS
GTTAGCTTCAATAACATTGC+CGG 0.431224 4:-57745827 None:intergenic
CCTACAAGCACATCTCAAAT+AGG 0.432958 4:+57746609 MsG0480021426.01.T01:CDS
TCTCAAAGGTTTCTCAGTAA+TGG 0.440318 4:-57746669 None:intergenic
GTTAGCGTCAGCGTCATTGA+TGG 0.440543 4:+57745742 MsG0480021426.01.T01:CDS
CATCGCCCATTTCATTCCGT+TGG 0.449881 4:-57745975 None:intergenic
GGAATGAACAACTGTGTTGA+GGG 0.450887 4:+57745682 MsG0480021426.01.T01:intron
CCAGTTCTCCTCCTTCTCAA+AGG 0.458672 4:-57746683 None:intergenic
GTTGACGGTTGAAGATTTGA+TGG 0.469285 4:+57746152 MsG0480021426.01.T01:CDS
TGGCTTGCATCATCGACCTT+CGG 0.472100 4:-57745793 None:intergenic
GTTCCTGCTTCAGCTGTGGC+CGG 0.472137 4:-57746495 None:intergenic
TGTGTCTAGTGACGATGATA+TGG 0.477336 4:+57746128 MsG0480021426.01.T01:CDS
ACAAGAAGGAAAGGATAAAG+AGG 0.492903 4:+57745902 MsG0480021426.01.T01:CDS
AGTTACCATCATGGATGAAA+AGG 0.495277 4:+57745716 MsG0480021426.01.T01:CDS
TTAGACCAACGGAATGAAAT+GGG 0.497585 4:+57745970 MsG0480021426.01.T01:CDS
TGAGGAACTTTGACCAACTA+GGG 0.498314 4:-57746978 None:intergenic
GGAATTACCTCCCCAGTTGT+TGG 0.512865 4:-57746588 None:intergenic
TTGAGGAACTTTGACCAACT+AGG 0.521770 4:-57746979 None:intergenic
CTGAGAAACCTTTGAGAAGG+AGG 0.523284 4:+57746675 MsG0480021426.01.T01:exon
GAATCTACATATCTTACTCA+TGG 0.525443 4:-57746851 None:intergenic
TAAAATTACCTGTTCTGCAA+TGG 0.531891 4:-57746175 None:intergenic
CGTTGTTCCTGCTTCAGCTG+TGG 0.533603 4:-57746499 None:intergenic
AGTTGTAATCTCACCCTAGT+TGG 0.536497 4:+57746965 MsG0480021426.01.T01:three_prime_UTR
TAGAACCACTTGTACATGAA+CGG 0.536560 4:+57745248 None:intergenic
CGTTTCTTTATAGAACGTCT+AGG 0.537766 4:-57746051 None:intergenic
TTTCCGGCCACAGCTGAAGC+AGG 0.538346 4:+57746492 MsG0480021426.01.T01:CDS
TCATCCTGCTCAAGATATGT+TGG 0.547783 4:+57746632 MsG0480021426.01.T01:CDS
GCAGTATGTCAAAGATTATG+AGG 0.550398 4:+57746419 MsG0480021426.01.T01:intron
ACGTCCAACATATCTTGAGC+AGG 0.563117 4:-57746636 None:intergenic
ATAATTCTTCTCCAACAACT+GGG 0.563253 4:+57746577 MsG0480021426.01.T01:CDS
TTCACCCGTTCATGTACAAG+TGG 0.569191 4:-57745253 None:intergenic
ACCTTCGGCATCATCCATGA+TGG 0.569194 4:-57745778 None:intergenic
AAAATGCACATGCCGTGGCA+AGG 0.572275 4:+57746881 MsG0480021426.01.T01:three_prime_UTR
AGGAATGAACAACTGTGTTG+AGG 0.572458 4:+57745681 MsG0480021426.01.T01:intron
ACTAATTCATTTCCTTGCCA+CGG 0.577440 4:-57746893 None:intergenic
GAAGAAAATTGATAACAAGA+AGG 0.578279 4:+57745888 MsG0480021426.01.T01:CDS
TTGTACATGAACGGGTGAAG+AGG 0.579808 4:+57745257 MsG0480021426.01.T01:five_prime_UTR
TGACGATGATATGGAGTTGA+CGG 0.580140 4:+57746137 MsG0480021426.01.T01:CDS
TATTGAAGCTAACCGCTCTA+CGG 0.585085 4:+57745837 MsG0480021426.01.T01:CDS
TCGTCACTAGACACATGCAC+TGG 0.589664 4:-57746120 None:intergenic
TTACTGAGAAACCTTTGAGA+AGG 0.593406 4:+57746672 MsG0480021426.01.T01:exon
TGTACATGAACGGGTGAAGA+GGG 0.593415 4:+57745258 MsG0480021426.01.T01:five_prime_UTR
GAAAACGCCAGTTACCATCA+TGG 0.601249 4:+57745707 MsG0480021426.01.T01:CDS
GCATTGCTTATGGTCCATCA+TGG 0.603957 4:+57745764 MsG0480021426.01.T01:CDS
GCTTCCCTTACCGAACTAGA+CGG 0.609129 4:-57746549 None:intergenic
GCAAGCCATGAAAGTGACTC+CGG 0.612685 4:+57745808 MsG0480021426.01.T01:CDS
AAATTGATAACAAGAAGGAA+AGG 0.618433 4:+57745893 MsG0480021426.01.T01:CDS
TTCTTCTCCAACAACTGGGG+AGG 0.637593 4:+57746581 MsG0480021426.01.T01:CDS
AAAACCGTCTAGTTCGGTAA+GGG 0.641816 4:+57746545 MsG0480021426.01.T01:CDS
AATTTAGAGGATCTTAGCCG+TGG 0.655635 4:+57746078 MsG0480021426.01.T01:CDS
TCCATCATGGATGATGCCGA+AGG 0.663700 4:+57745777 MsG0480021426.01.T01:CDS
TTAGAGGATCTTAGCCGTGG+TGG 0.685556 4:+57746081 MsG0480021426.01.T01:CDS
TAATTCTTCTCCAACAACTG+GGG 0.691028 4:+57746578 MsG0480021426.01.T01:CDS
AAACATTTCGAAAGACAAGG+TGG 0.702175 4:+57746822 MsG0480021426.01.T01:three_prime_UTR
ATACATCATCACTACCACCA+CGG 0.738202 4:-57746095 None:intergenic
AGACGTTCTATAAAGAAACG+CGG 0.745605 4:+57746054 MsG0480021426.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAGAATTGGAAATT+TGG - Chr4:57745558-57745577 None:intergenic 15.0%
!! ATTTAATTGGGGTTAAAATT+AGG - Chr4:57745518-57745537 None:intergenic 20.0%
!! ATTTGATTGATGTTATCAAT+AGG + Chr4:57745661-57745680 MsG0480021426.01.T01:intron 20.0%
!! GAATTTGAATATGAATGATA+GGG - Chr4:57745360-57745379 None:intergenic 20.0%
!! TGAATTTGAATATGAATGAT+AGG - Chr4:57745361-57745380 None:intergenic 20.0%
!! TTTAATTGGGGTTAAAATTA+GGG - Chr4:57745517-57745536 None:intergenic 20.0%
!!! AATAGTTTAACGGATTTAAT+TGG - Chr4:57745531-57745550 None:intergenic 20.0%
!!! ATAGTTTAACGGATTTAATT+GGG - Chr4:57745530-57745549 None:intergenic 20.0%
!!! ATTTGGAATGAATAGTTTAA+CGG - Chr4:57745541-57745560 None:intergenic 20.0%
!!! GTTTTTCTTTACTTTATCAA+GGG - Chr4:57746806-57746825 None:intergenic 20.0%
!!! TGTTTTTCTTTACTTTATCA+AGG - Chr4:57746807-57746826 None:intergenic 20.0%
!!! TTTTTCTTTACTTTATCAAG+GGG - Chr4:57746805-57746824 None:intergenic 20.0%
! AAAATTGTTCAAGCGATTAT+AGG - Chr4:57746388-57746407 None:intergenic 25.0%
! AAATTGTTCAAGCGATTATA+GGG - Chr4:57746387-57746406 None:intergenic 25.0%
! ACAATAATTGCTGTATTTGA+TGG + Chr4:57746929-57746948 MsG0480021426.01.T01:three_prime_UTR 25.0%
! AGATTCAGAAAATGGAAATT+TGG - Chr4:57745435-57745454 None:intergenic 25.0%
! ATTCATACCTAGAATTATTG+GGG - Chr4:57745412-57745431 None:intergenic 25.0%
! GAAAAACAAATTTAGACCAA+CGG + Chr4:57745959-57745978 MsG0480021426.01.T01:CDS 25.0%
! GAATTCTAGTGCAAAATTTA+AGG + Chr4:57745930-57745949 MsG0480021426.01.T01:CDS 25.0%
! GATTCATACCTAGAATTATT+GGG - Chr4:57745413-57745432 None:intergenic 25.0%
!! AAATTGATAACAAGAAGGAA+AGG + Chr4:57745893-57745912 MsG0480021426.01.T01:CDS 25.0%
!! AGTGCAAAATTTAAGGTTAA+GGG + Chr4:57745937-57745956 MsG0480021426.01.T01:CDS 25.0%
!! GAAGAAAATTGATAACAAGA+AGG + Chr4:57745888-57745907 MsG0480021426.01.T01:CDS 25.0%
!! TAGTGCAAAATTTAAGGTTA+AGG + Chr4:57745936-57745955 MsG0480021426.01.T01:CDS 25.0%
!!! TAGTTTAACGGATTTAATTG+GGG - Chr4:57745529-57745548 None:intergenic 25.0%
AAATTAGGGTTTAAGAGAAG+AGG - Chr4:57745503-57745522 None:intergenic 30.0%
AATTAGGGTTTAAGAGAAGA+GGG - Chr4:57745502-57745521 None:intergenic 30.0%
ATAATTCTTCTCCAACAACT+GGG + Chr4:57746577-57746596 MsG0480021426.01.T01:CDS 30.0%
GAAAAACATTTCGAAAGACA+AGG + Chr4:57746819-57746838 MsG0480021426.01.T01:three_prime_UTR 30.0%
GAAAGTCAAAATGAACTTGT+TGG + Chr4:57746771-57746790 MsG0480021426.01.T01:three_prime_UTR 30.0%
GAATCTACATATCTTACTCA+TGG - Chr4:57746854-57746873 None:intergenic 30.0%
GCATAAAGAGATTCAGAAAA+TGG - Chr4:57745443-57745462 None:intergenic 30.0%
GGATTCATACCTAGAATTAT+TGG - Chr4:57745414-57745433 None:intergenic 30.0%
TAAAATTACCTGTTCTGCAA+TGG - Chr4:57746178-57746197 None:intergenic 30.0%
TATAATTCTTCTCCAACAAC+TGG + Chr4:57746576-57746595 MsG0480021426.01.T01:CDS 30.0%
TTAAGAGAAGAGGGTTAAAT+TGG - Chr4:57745493-57745512 None:intergenic 30.0%
AAACATTTCGAAAGACAAGG+TGG + Chr4:57746822-57746841 MsG0480021426.01.T01:three_prime_UTR 35.0%
AAAGAAACGCGGAAATTTAG+AGG + Chr4:57746065-57746084 MsG0480021426.01.T01:CDS 35.0%
AATATTGCTTCCCAAGACAA+TGG + Chr4:57746335-57746354 MsG0480021426.01.T01:intron 35.0%
AATTGCACCCCAATAATTCT+AGG + Chr4:57745402-57745421 MsG0480021426.01.T01:intron 35.0%
ACAAGAAGGAAAGGATAAAG+AGG + Chr4:57745902-57745921 MsG0480021426.01.T01:CDS 35.0%
ACGCTTGAATTATCAGCTTA+TGG - Chr4:57746207-57746226 None:intergenic 35.0%
ACTAATTCATTTCCTTGCCA+CGG - Chr4:57746896-57746915 None:intergenic 35.0%
AGACGTTCTATAAAGAAACG+CGG + Chr4:57746054-57746073 MsG0480021426.01.T01:CDS 35.0%
AGTTAAGTTACACTCTCAAG+TGG - Chr4:57745638-57745657 None:intergenic 35.0%
AGTTACCATCATGGATGAAA+AGG + Chr4:57745716-57745735 MsG0480021426.01.T01:CDS 35.0%
ATCACATCAACCATTGTCTT+GGG - Chr4:57746348-57746367 None:intergenic 35.0%
CGCTTGAATTATCAGCTTAT+GGG - Chr4:57746206-57746225 None:intergenic 35.0%
CGTTTCTTTATAGAACGTCT+AGG - Chr4:57746054-57746073 None:intergenic 35.0%
GAAAAAAGCCATCAAATCGA+AGG + Chr4:57746020-57746039 MsG0480021426.01.T01:CDS 35.0%
GAACAAAAAACCGTCTAGTT+CGG + Chr4:57746539-57746558 MsG0480021426.01.T01:CDS 35.0%
GCAGTATGTCAAAGATTATG+AGG + Chr4:57746419-57746438 MsG0480021426.01.T01:intron 35.0%
TAATTCTTCTCCAACAACTG+GGG + Chr4:57746578-57746597 MsG0480021426.01.T01:CDS 35.0%
TCTCAAAGGTTTCTCAGTAA+TGG - Chr4:57746672-57746691 None:intergenic 35.0%
TTAGACCAACGGAATGAAAT+GGG + Chr4:57745970-57745989 MsG0480021426.01.T01:CDS 35.0%
TTTAGACCAACGGAATGAAA+TGG + Chr4:57745969-57745988 MsG0480021426.01.T01:CDS 35.0%
! GTTAGCTTCAATAACATTGC+CGG - Chr4:57745830-57745849 None:intergenic 35.0%
! TTACTGAGAAACCTTTGAGA+AGG + Chr4:57746672-57746691 MsG0480021426.01.T01:exon 35.0%
! TTTTCATCCATGATGGTAAC+TGG - Chr4:57745717-57745736 None:intergenic 35.0%
!!! ACGGTTTTTTGTTCTCATGA+AGG - Chr4:57746533-57746552 None:intergenic 35.0%
!!! CGGTTTTTTGTTCTCATGAA+GGG - Chr4:57746532-57746551 None:intergenic 35.0%
AATTTAGAGGATCTTAGCCG+TGG + Chr4:57746078-57746097 MsG0480021426.01.T01:CDS 40.0%
AGAACCACTTGTACATGAAC+GGG + Chr4:57745249-57745268 MsG0480021426.01.T01:five_prime_UTR 40.0%
AGATATGTTGGACGTCTTCT+TGG + Chr4:57746644-57746663 MsG0480021426.01.T01:CDS 40.0%
AGGAATGAACAACTGTGTTG+AGG + Chr4:57745681-57745700 MsG0480021426.01.T01:intron 40.0%
AGTTGTAATCTCACCCTAGT+TGG + Chr4:57746965-57746984 MsG0480021426.01.T01:three_prime_UTR 40.0%
ATACATCATCACTACCACCA+CGG - Chr4:57746098-57746117 None:intergenic 40.0%
CATCACATCAACCATTGTCT+TGG - Chr4:57746349-57746368 None:intergenic 40.0%
CCTACAAGCACATCTCAAAT+AGG + Chr4:57746609-57746628 MsG0480021426.01.T01:CDS 40.0%
GATATGTTGGACGTCTTCTT+GGG + Chr4:57746645-57746664 MsG0480021426.01.T01:CDS 40.0%
GGAATGAACAACTGTGTTGA+GGG + Chr4:57745682-57745701 MsG0480021426.01.T01:intron 40.0%
GTTCATGTACAAGTGGTTCT+AGG - Chr4:57745249-57745268 None:intergenic 40.0%
GTTGACGGTTGAAGATTTGA+TGG + Chr4:57746152-57746171 MsG0480021426.01.T01:CDS 40.0%
TATTGAAGCTAACCGCTCTA+CGG + Chr4:57745837-57745856 MsG0480021426.01.T01:CDS 40.0%
TCATCCTGCTCAAGATATGT+TGG + Chr4:57746632-57746651 MsG0480021426.01.T01:CDS 40.0%
TGACGATGATATGGAGTTGA+CGG + Chr4:57746137-57746156 MsG0480021426.01.T01:CDS 40.0%
TGAGCCAAATTGGCAATTTC+CGG + Chr4:57746476-57746495 MsG0480021426.01.T01:CDS 40.0%
TGTGTCTAGTGACGATGATA+TGG + Chr4:57746128-57746147 MsG0480021426.01.T01:CDS 40.0%
! AAAAACCGTCTAGTTCGGTA+AGG + Chr4:57746544-57746563 MsG0480021426.01.T01:CDS 40.0%
! AAAACCGTCTAGTTCGGTAA+GGG + Chr4:57746545-57746564 MsG0480021426.01.T01:CDS 40.0%
! AGCTCTATCCTTCGATTTGA+TGG - Chr4:57746031-57746050 None:intergenic 40.0%
! CAAGACAATGGTTGATGTGA+TGG + Chr4:57746347-57746366 MsG0480021426.01.T01:intron 40.0%
! CCTATTTGAGATGTGCTTGT+AGG - Chr4:57746612-57746631 None:intergenic 40.0%
! GTCATTGATGGCATTGCTTA+TGG + Chr4:57745754-57745773 MsG0480021426.01.T01:CDS 40.0%
! TAGCTTCATTTTCCGTAGAG+CGG - Chr4:57745852-57745871 None:intergenic 40.0%
ACGTCCAACATATCTTGAGC+AGG - Chr4:57746639-57746658 None:intergenic 45.0%
CAACAAAAATGCACATGCCG+TGG + Chr4:57746876-57746895 MsG0480021426.01.T01:three_prime_UTR 45.0%
GAAAACGCCAGTTACCATCA+TGG + Chr4:57745707-57745726 MsG0480021426.01.T01:CDS 45.0%
GCATTGCTTATGGTCCATCA+TGG + Chr4:57745764-57745783 MsG0480021426.01.T01:CDS 45.0%
GCTGATAATTCAAGCGTCAG+TGG + Chr4:57746210-57746229 MsG0480021426.01.T01:intron 45.0%
TGTACATGAACGGGTGAAGA+GGG + Chr4:57745258-57745277 MsG0480021426.01.T01:five_prime_UTR 45.0%
TTCACCCGTTCATGTACAAG+TGG - Chr4:57745256-57745275 None:intergenic 45.0%
TTGTACATGAACGGGTGAAG+AGG + Chr4:57745257-57745276 MsG0480021426.01.T01:five_prime_UTR 45.0%
! CTGAGAAACCTTTGAGAAGG+AGG + Chr4:57746675-57746694 MsG0480021426.01.T01:exon 45.0%
! GACAATGGTTGATGTGATGG+AGG + Chr4:57746350-57746369 MsG0480021426.01.T01:intron 45.0%
! TTTGATGGCCATTGCAGAAC+AGG + Chr4:57746167-57746186 MsG0480021426.01.T01:CDS 45.0%
!!! ACTGGCCTTTTCATCCATGA+TGG - Chr4:57745724-57745743 None:intergenic 45.0%
!!! TTTTTTTATTTTTAAAGAAT+TGG - Chr4:57745566-57745585 None:intergenic 5.0%
AAAATGCACATGCCGTGGCA+AGG + Chr4:57746881-57746900 MsG0480021426.01.T01:three_prime_UTR 50.0%
ACCTTCGGCATCATCCATGA+TGG - Chr4:57745781-57745800 None:intergenic 50.0%
CATCGCCCATTTCATTCCGT+TGG - Chr4:57745978-57745997 None:intergenic 50.0%
CCAGTTCTCCTCCTTCTCAA+AGG - Chr4:57746686-57746705 None:intergenic 50.0%
GCAAGCCATGAAAGTGACTC+CGG + Chr4:57745808-57745827 MsG0480021426.01.T01:CDS 50.0%
GCAGACAGTGTGAGCCAAAT+TGG + Chr4:57746466-57746485 MsG0480021426.01.T01:CDS 50.0%
GCTTCCCTTACCGAACTAGA+CGG - Chr4:57746552-57746571 None:intergenic 50.0%
GGAATTACCTCCCCAGTTGT+TGG - Chr4:57746591-57746610 None:intergenic 50.0%
GTGGCCGGAAATTGCCAATT+TGG - Chr4:57746483-57746502 None:intergenic 50.0%
GTTAGCGTCAGCGTCATTGA+TGG + Chr4:57745742-57745761 MsG0480021426.01.T01:CDS 50.0%
TCAATGACGCTGACGCTAAC+TGG - Chr4:57745742-57745761 None:intergenic 50.0%
TCCATCATGGATGATGCCGA+AGG + Chr4:57745777-57745796 MsG0480021426.01.T01:CDS 50.0%
TCGTCACTAGACACATGCAC+TGG - Chr4:57746123-57746142 None:intergenic 50.0%
TTAGAGGATCTTAGCCGTGG+TGG + Chr4:57746081-57746100 MsG0480021426.01.T01:CDS 50.0%
TTCTTCTCCAACAACTGGGG+AGG + Chr4:57746581-57746600 MsG0480021426.01.T01:CDS 50.0%
! CATTGCCGGAGTCACTTTCA+TGG - Chr4:57745816-57745835 None:intergenic 50.0%
! CCTTTGAGAAGGAGGAGAAC+TGG + Chr4:57746683-57746702 MsG0480021426.01.T01:exon 50.0%
! TGGCTTGCATCATCGACCTT+CGG - Chr4:57745796-57745815 None:intergenic 50.0%
CGTTGTTCCTGCTTCAGCTG+TGG - Chr4:57746502-57746521 None:intergenic 55.0%
GTTCCTGCTTCAGCTGTGGC+CGG - Chr4:57746498-57746517 None:intergenic 60.0%
TTTCCGGCCACAGCTGAAGC+AGG + Chr4:57746492-57746511 MsG0480021426.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 57745249 57746998 57745249 ID=MsG0480021426.01;Name=MsG0480021426.01
Chr4 mRNA 57745249 57746998 57745249 ID=MsG0480021426.01.T01;Parent=MsG0480021426.01;Name=MsG0480021426.01.T01;_AED=0.16;_eAED=0.16;_QI=33|1|1|1|0.5|0.33|3|309|256
Chr4 exon 57745249 57745279 57745249 ID=MsG0480021426.01.T01:exon:19344;Parent=MsG0480021426.01.T01
Chr4 exon 57745683 57746188 57745683 ID=MsG0480021426.01.T01:exon:19345;Parent=MsG0480021426.01.T01
Chr4 exon 57746423 57746998 57746423 ID=MsG0480021426.01.T01:exon:19346;Parent=MsG0480021426.01.T01
Chr4 five_prime_UTR 57745249 57745279 57745249 ID=MsG0480021426.01.T01:five_prime_utr;Parent=MsG0480021426.01.T01
Chr4 five_prime_UTR 57745683 57745684 57745683 ID=MsG0480021426.01.T01:five_prime_utr;Parent=MsG0480021426.01.T01
Chr4 CDS 57745685 57746188 57745685 ID=MsG0480021426.01.T01:cds;Parent=MsG0480021426.01.T01
Chr4 CDS 57746423 57746689 57746423 ID=MsG0480021426.01.T01:cds;Parent=MsG0480021426.01.T01
Chr4 three_prime_UTR 57746690 57746998 57746690 ID=MsG0480021426.01.T01:three_prime_utr;Parent=MsG0480021426.01.T01
Gene Sequence

>MsG0480021426.01.T01

ATGAACAACTGTGTTGAGGGAAGAAAACGCCAGTTACCATCATGGATGAAAAGGCCAGTTAGCGTCAGCGTCATTGATGGCATTGCTTATGGTCCATCATGGATGATGCCGAAGGTCGATGATGCAAGCCATGAAAGTGACTCCGGCAATGTTATTGAAGCTAACCGCTCTACGGAAAATGAAGCTATCAGTGCAGCAGATGTGAAGAAAATTGATAACAAGAAGGAAAGGATAAAGAGGAAGTCGAATTCTAGTGCAAAATTTAAGGTTAAGGGAAAAACAAATTTAGACCAACGGAATGAAATGGGCGATGATGATGTTAATGAAAATAAGAAGAAAAAAGCCATCAAATCGAAGGATAGAGCTCCTAGACGTTCTATAAAGAAACGCGGAAATTTAGAGGATCTTAGCCGTGGTGGTAGTGATGATGTATGTCCAGTGCATGTGTCTAGTGACGATGATATGGAGTTGACGGTTGAAGATTTGATGGCCATTGCAGAACAGTATGTCAAAGATTATGAGGAGAAAGAGCTGCAAGAAACGTCAAGCAGACAGTGTGAGCCAAATTGGCAATTTCCGGCCACAGCTGAAGCAGGAACAACGCTTGATTCCCTTCATGAGAACAAAAAACCGTCTAGTTCGGTAAGGGAAGCTTTATATAATTCTTCTCCAACAACTGGGGAGGTAATTCCTACAAGCACATCTCAAATAGGTCATCCTGCTCAAGATATGTTGGACGTCTTCTTGGGTCCATTACTGAGAAACCTTTGA

Protein sequence

>MsG0480021426.01.T01

MNNCVEGRKRQLPSWMKRPVSVSVIDGIAYGPSWMMPKVDDASHESDSGNVIEANRSTENEAISAADVKKIDNKKERIKRKSNSSAKFKVKGKTNLDQRNEMGDDDVNENKKKKAIKSKDRAPRRSIKKRGNLEDLSRGGSDDVCPVHVSSDDDMELTVEDLMAIAEQYVKDYEEKELQETSSRQCEPNWQFPATAEAGTTLDSLHENKKPSSSVREALYNSSPTTGEVIPTSTSQIGHPAQDMLDVFLGPLLRNL*