AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034037.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034037.01.T01 MTR_3g006860 97.753 89 2 0 98 186 399 487 2.99e-54 180
MsG0680034037.01.T01 MTR_3g006860 77.193 57 13 0 1 57 92 148 2.49e-19 85.1
MsG0680034037.01.T01 MTR_6g463380 92.135 89 7 0 98 186 403 491 6.75e-51 171
MsG0680034037.01.T01 MTR_6g463380 87.037 54 7 0 1 54 96 149 3.86e-23 95.9
MsG0680034037.01.T01 MTR_6g061650 61.798 89 32 2 98 184 189 277 3.96e-27 104
MsG0680034037.01.T01 MTR_6g463380 88.462 52 6 0 98 149 403 454 4.08e-25 101
MsG0680034037.01.T01 MTR_6g463380 87.037 54 7 0 1 54 96 149 4.96e-23 95.5
MsG0680034037.01.T01 MTR_6g463380 90.000 50 5 0 98 147 403 452 3.82e-24 98.6
MsG0680034037.01.T01 MTR_6g463380 87.037 54 7 0 1 54 96 149 5.16e-23 95.1
MsG0680034037.01.T01 MTR_1g014390 47.059 85 20 1 98 182 188 247 1.90e-16 75.5
MsG0680034037.01.T01 MTR_6g006850 45.679 81 39 1 98 178 181 256 4.57e-15 72.0
MsG0680034037.01.T01 MTR_1g029560 46.250 80 30 1 98 177 84 150 4.36e-13 65.1
MsG0680034037.01.T01 MTR_1g012015 81.818 33 6 0 149 181 23 55 2.30e-12 60.8
MsG0680034037.01.T01 MTR_6g080120 76.923 39 7 1 148 186 1 37 4.80e-12 58.9
MsG0680034037.01.T01 MTR_7g025575 76.471 34 8 0 148 181 13 46 8.84e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034037.01.T01 AT5G51740 79.310 87 18 0 98 184 311 397 3.06e-43 149
MsG0680034037.01.T01 AT5G51740 79.310 87 18 0 98 184 354 440 5.83e-43 149
MsG0680034037.01.T01 AT5G51740 74.000 50 13 0 98 147 354 403 1.25e-18 82.8

Find 60 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAATGCAACACAATTTA+AGG 0.102160 6:-79145980 None:intergenic
TCCAAAGGTGTTAGCTTTAA+TGG 0.157644 6:+79142035 MsG0680034037.01.T01:CDS
TGTCAAGGTGGTAACTTTAA+TGG 0.209828 6:+79141936 MsG0680034037.01.T01:CDS
TAAGGATTTGATATGTTAAT+AGG 0.244723 6:+79145911 MsG0680034037.01.T01:three_prime_UTR
TTGAGATAAATAAGAATATT+GGG 0.260342 6:+79142006 MsG0680034037.01.T01:CDS
TTTGAGATAAATAAGAATAT+TGG 0.272846 6:+79142005 MsG0680034037.01.T01:CDS
AAATGTGTTCGCTTCGTATA+AGG 0.292798 6:-79142277 None:intergenic
TGTGTATGTAAATGTGAATT+TGG 0.317129 6:+79145878 MsG0680034037.01.T01:three_prime_UTR
CCAAACAATGTTTACTCTTC+CGG 0.321283 6:+79146051 MsG0680034037.01.T01:three_prime_UTR
TGGTGTTGAAGGATTTCTTT+AGG 0.322830 6:+79145773 MsG0680034037.01.T01:three_prime_UTR
CCAAAGGTGTTAGCTTTAAT+GGG 0.339118 6:+79142036 MsG0680034037.01.T01:CDS
GACATAGTGTTGACAATATC+AGG 0.345694 6:-79143250 None:intergenic
CCGGAAGAGTAAACATTGTT+TGG 0.351831 6:-79146051 None:intergenic
AACATTTGGTTTCGAATCAA+TGG 0.355827 6:-79146141 None:intergenic
GTCAAGGTGGTAACTTTAAT+GGG 0.361635 6:+79141937 MsG0680034037.01.T01:CDS
AGACTCTTCTCCATCTCTTT+CGG 0.364887 6:-79142310 None:intergenic
AAGAAAACGAGCAGAATTAC+TGG 0.372401 6:+79145692 MsG0680034037.01.T01:three_prime_UTR
CCCATTAAAGCTAACACCTT+TGG 0.373919 6:-79142036 None:intergenic
TCTTCAATTCCTAAGAGGTT+AGG 0.387938 6:+79141972 MsG0680034037.01.T01:CDS
CATCTTCTCAGCACTGTGTC+TGG 0.400313 6:-79143173 None:intergenic
GAATTTGGTTTCATTTACTA+AGG 0.415874 6:+79145893 MsG0680034037.01.T01:three_prime_UTR
AAGAGATGGAGAAGAGTCTT+GGG 0.422967 6:+79142314 MsG0680034037.01.T01:CDS
AGAGAAGGACATGGTGTTGA+AGG 0.427494 6:+79145762 MsG0680034037.01.T01:three_prime_UTR
TTTACATACACAGACAAGTA+TGG 0.429888 6:-79145867 None:intergenic
AAAGAGATGGAGAAGAGTCT+TGG 0.454372 6:+79142313 MsG0680034037.01.T01:CDS
ACCTAAAGTCTACGAAAAGT+TGG 0.458356 6:+79145615 MsG0680034037.01.T01:CDS
TATTTCGCTACTCATCCATC+TGG 0.461058 6:+79145669 MsG0680034037.01.T01:three_prime_UTR
AGAATTACTGGCTCAAGCTC+AGG 0.477979 6:+79145704 MsG0680034037.01.T01:three_prime_UTR
AATAATTACCTTCTGGAGAA+AGG 0.480591 6:-79143292 None:intergenic
CACAATGTGTTTGAATTCAC+CGG 0.482678 6:-79146070 None:intergenic
AGAAGATGACAAAGAATATG+TGG 0.484136 6:+79143188 MsG0680034037.01.T01:CDS
AATAATAAGAATATTAGAGT+TGG 0.496382 6:+79141912 MsG0680034037.01.T01:CDS
CCTAAAGTCTACGAAAAGTT+GGG 0.514744 6:+79145616 MsG0680034037.01.T01:CDS
AATCTAAAGCTTAGAATCGC+CGG 0.519495 6:-79145647 None:intergenic
AATATTAGAGTTGGTTGTCA+AGG 0.519986 6:+79141921 MsG0680034037.01.T01:CDS
ATGGTGGCATTTCCTACAGT+TGG 0.526476 6:-79145848 None:intergenic
CGGTGAATTCAAACACATTG+TGG 0.533405 6:+79146071 MsG0680034037.01.T01:three_prime_UTR
TGAGATAAATAAGAATATTG+GGG 0.535578 6:+79142007 MsG0680034037.01.T01:CDS
TGCCACACGTGGATCGTAGC+CGG 0.536111 6:-79145593 None:intergenic
ATTAGAGTTGGTTGTCAAGG+TGG 0.541340 6:+79141924 MsG0680034037.01.T01:CDS
GATAAATAAGAATATTGGGG+TGG 0.543034 6:+79142010 MsG0680034037.01.T01:CDS
AATATTGGGGTGGGTTCCAA+AGG 0.550451 6:+79142020 MsG0680034037.01.T01:CDS
CTTCTATTAGTTGCATCCGC+CGG 0.553436 6:+79145574 MsG0680034037.01.T01:CDS
TACGGCTACCTTTCTCCAGA+AGG 0.558879 6:+79143284 MsG0680034037.01.T01:CDS
ATAAATAAGAATATTGGGGT+GGG 0.563572 6:+79142011 MsG0680034037.01.T01:CDS
CAGACAAGTGTTCCAACTGT+AGG 0.567534 6:+79145836 MsG0680034037.01.T01:three_prime_UTR
GAAATTGAAGCTGATTACAT+TGG 0.569179 6:+79145550 MsG0680034037.01.T01:CDS
CGAGTTTGAGATGAGGAAGG+CGG 0.570100 6:+79142341 MsG0680034037.01.T01:CDS
ACTGGCTCAAGCTCAGGTGA+TGG 0.577941 6:+79145710 MsG0680034037.01.T01:three_prime_UTR
ACTAAATGGAATATCAACAA+TGG 0.608229 6:-79146023 None:intergenic
GAAGATGACAAAGAATATGT+GGG 0.612484 6:+79143189 MsG0680034037.01.T01:CDS
GGGAGAGCGAGTTTGAGATG+AGG 0.617950 6:+79142334 MsG0680034037.01.T01:CDS
GAGCGAGTTTGAGATGAGGA+AGG 0.618673 6:+79142338 MsG0680034037.01.T01:CDS
TGATTAGGTTGGACATGCTG+TGG 0.626030 6:+79143150 MsG0680034037.01.T01:intron
CGCCGGCTACGATCCACGTG+TGG 0.642188 6:+79145591 MsG0680034037.01.T01:CDS
ATATATAAGACTGTAAGAGA+AGG 0.650562 6:+79145747 MsG0680034037.01.T01:three_prime_UTR
TAGACTTTAGGTGCCACACG+TGG 0.667217 6:-79145604 None:intergenic
ACATACACAGACAAGTATGG+TGG 0.691543 6:-79145864 None:intergenic
CACACGTGGATCGTAGCCGG+CGG 0.706408 6:-79145590 None:intergenic
AAGACTGTAAGAGAAGGACA+TGG 0.732952 6:+79145753 MsG0680034037.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTAAAATAAAAAATGTT+TGG - Chr6:79146120-79146139 None:intergenic 10.0%
!! ATAAAAATTATAAGTGTTTA+TGG - Chr6:79144601-79144620 None:intergenic 10.0%
!! CTGAAAAATTATAAAAAATT+GGG - Chr6:79145526-79145545 None:intergenic 10.0%
!!! TAAATGTACAAATTTAAAAT+TGG - Chr6:79144959-79144978 None:intergenic 10.0%
!! AATAATAAGAATATTAGAGT+TGG + Chr6:79141912-79141931 MsG0680034037.01.T01:CDS 15.0%
!! ATATTGAAAAGAAGATTAAA+CGG - Chr6:79145088-79145107 None:intergenic 15.0%
!! CCTGAAAAATTATAAAAAAT+TGG - Chr6:79145527-79145546 None:intergenic 15.0%
!! TTGAGATAAATAAGAATATT+GGG + Chr6:79142006-79142025 MsG0680034037.01.T01:CDS 15.0%
!! TTTATTAAGCAATATGAAAT+TGG + Chr6:79144389-79144408 MsG0680034037.01.T01:intron 15.0%
!!! AATTGGAAATTTTATTTAGT+TGG + Chr6:79144406-79144425 MsG0680034037.01.T01:intron 15.0%
!!! ATTTTAATTATACACAAATG+TGG + Chr6:79145449-79145468 MsG0680034037.01.T01:intron 15.0%
!!! CCAATTTTTTATAATTTTTC+AGG + Chr6:79145524-79145543 MsG0680034037.01.T01:intron 15.0%
!!! TGTTTGATTTTTAACTTATT+AGG + Chr6:79142818-79142837 MsG0680034037.01.T01:intron 15.0%
!!! TTTGAAGTTATAAGAATTTT+AGG + Chr6:79142104-79142123 MsG0680034037.01.T01:intron 15.0%
!!! TTTGAGATAAATAAGAATAT+TGG + Chr6:79142005-79142024 MsG0680034037.01.T01:CDS 15.0%
!!! TTTTTATAACTGTGTATTTT+GGG + Chr6:79142239-79142258 MsG0680034037.01.T01:CDS 15.0%
!!! TTTTTTATAATTTTTCAGGA+TGG + Chr6:79145528-79145547 MsG0680034037.01.T01:intron 15.0%
!! AAAATTCCAATTCGTATTAT+AGG - Chr6:79144505-79144524 None:intergenic 20.0%
!! AATTAATGCAACACAATTTA+AGG - Chr6:79145983-79146002 None:intergenic 20.0%
!! CAAATAAAGAAAGAAAACAT+TGG - Chr6:79144285-79144304 None:intergenic 20.0%
!! CACGTTAAATATTAAGATAA+GGG + Chr6:79143425-79143444 MsG0680034037.01.T01:intron 20.0%
!! CCAAATTAATTCATTTGTAT+AGG + Chr6:79144862-79144881 MsG0680034037.01.T01:intron 20.0%
!! CCTATACAAATGAATTAATT+TGG - Chr6:79144865-79144884 None:intergenic 20.0%
!! GAATGAAATTAATGCAAATA+TGG - Chr6:79144713-79144732 None:intergenic 20.0%
!! TAAGGATTTGATATGTTAAT+AGG + Chr6:79145911-79145930 MsG0680034037.01.T01:three_prime_UTR 20.0%
!! TCAAATAAGTTAATCCAAAT+AGG - Chr6:79142844-79142863 None:intergenic 20.0%
!! TGAGATAAATAAGAATATTG+GGG + Chr6:79142007-79142026 MsG0680034037.01.T01:CDS 20.0%
!! TGGTATTCTTGTATAAATTA+AGG - Chr6:79144463-79144482 None:intergenic 20.0%
!! TTAAGCTATTTATTCAAACA+AGG + Chr6:79143066-79143085 MsG0680034037.01.T01:intron 20.0%
!!! GATTTTTTCAAATTATTAGC+TGG - Chr6:79145209-79145228 None:intergenic 20.0%
!!! GGAATTTTGATTTATCATAT+TGG + Chr6:79144517-79144536 MsG0680034037.01.T01:intron 20.0%
!!! GGACTTTTATTAATTTTTGT+TGG - Chr6:79143846-79143865 None:intergenic 20.0%
!!! GTTTTTATAACTGTGTATTT+TGG + Chr6:79142238-79142257 MsG0680034037.01.T01:CDS 20.0%
! AAGAGCAACAAAAATTCAAT+TGG - Chr6:79143339-79143358 None:intergenic 25.0%
! AATTATAAGTGTTTATGGAG+AGG - Chr6:79144596-79144615 None:intergenic 25.0%
! ACTAAATGGAATATCAACAA+TGG - Chr6:79146026-79146045 None:intergenic 25.0%
! ATAAATAAGAATATTGGGGT+GGG + Chr6:79142011-79142030 MsG0680034037.01.T01:CDS 25.0%
! ATATATAAGACTGTAAGAGA+AGG + Chr6:79145747-79145766 MsG0680034037.01.T01:three_prime_UTR 25.0%
! ATTATAAGTGTTTATGGAGA+GGG - Chr6:79144595-79144614 None:intergenic 25.0%
! ATTGGTTATAAAGAGAGAAA+AGG - Chr6:79143321-79143340 None:intergenic 25.0%
! CAAACCAAACAAAAACAAAA+TGG - Chr6:79144081-79144100 None:intergenic 25.0%
! GAAACAATATATGATATGTC+TGG + Chr6:79142912-79142931 MsG0680034037.01.T01:intron 25.0%
! GACTCATTTCATTGATATAT+AGG + Chr6:79143370-79143389 MsG0680034037.01.T01:intron 25.0%
! GCACGTTAAATATTAAGATA+AGG + Chr6:79143424-79143443 MsG0680034037.01.T01:intron 25.0%
! TAAGGGAAAAACATGAAATT+AGG + Chr6:79143442-79143461 MsG0680034037.01.T01:intron 25.0%
! TGAAAAATTATGTGTTGAGT+TGG - Chr6:79143635-79143654 None:intergenic 25.0%
! TGCAAATATGGATGTAATTT+CGG - Chr6:79144701-79144720 None:intergenic 25.0%
! TGTGTATGTAAATGTGAATT+TGG + Chr6:79145878-79145897 MsG0680034037.01.T01:three_prime_UTR 25.0%
! TTTAGTGTAATTACAAGTGT+CGG + Chr6:79145235-79145254 MsG0680034037.01.T01:intron 25.0%
!! CATTTACATTTGTTTCTTGT+TGG + Chr6:79145039-79145058 MsG0680034037.01.T01:intron 25.0%
!! GAATTTGGTTTCATTTACTA+AGG + Chr6:79145893-79145912 MsG0680034037.01.T01:three_prime_UTR 25.0%
!! TCTTTCTTTATTTGTTGCTA+TGG + Chr6:79144291-79144310 MsG0680034037.01.T01:intron 25.0%
!! TTTAACTTATTAGGCCTATT+TGG + Chr6:79142827-79142846 MsG0680034037.01.T01:intron 25.0%
!!! AGGTTTTAAATCATCAAAGA+AGG + Chr6:79145931-79145950 MsG0680034037.01.T01:three_prime_UTR 25.0%
!!! ATTGTTTGGTTTTGACTAAA+TGG - Chr6:79146040-79146059 None:intergenic 25.0%
!!! ATTTTAGGAGATTAGACAAA+AGG + Chr6:79142078-79142097 MsG0680034037.01.T01:intron 25.0%
!!! CATTTTGTTTTTGTTTGGTT+TGG + Chr6:79144079-79144098 MsG0680034037.01.T01:intron 25.0%
!!! GTTTGTCATGGTATTTTTTA+TGG - Chr6:79144483-79144502 None:intergenic 25.0%
!!! TTCTCCATTTTGTTTTTGTT+TGG + Chr6:79144074-79144093 MsG0680034037.01.T01:intron 25.0%
!!! TTTTAAGAAACGGTACATTT+TGG - Chr6:79143867-79143886 None:intergenic 25.0%
!!! TTTTAGGAGATTAGACAAAA+GGG + Chr6:79142079-79142098 MsG0680034037.01.T01:intron 25.0%
AACAGTGCAAATCATAAAAG+AGG - Chr6:79144190-79144209 None:intergenic 30.0%
AACCATAATGAGTCTGATTT+CGG + Chr6:79144980-79144999 MsG0680034037.01.T01:intron 30.0%
AGAAGATGACAAAGAATATG+TGG + Chr6:79143188-79143207 MsG0680034037.01.T01:CDS 30.0%
ATGAAGTTTAGCTGAATTAG+TGG + Chr6:79143475-79143494 MsG0680034037.01.T01:intron 30.0%
ATTTGAATGTAGTATGAGCA+TGG + Chr6:79143658-79143677 MsG0680034037.01.T01:intron 30.0%
CAACTGTTTGAGAGATATTA+CGG + Chr6:79142890-79142909 MsG0680034037.01.T01:intron 30.0%
CTTAAGCGCTTATTTGATAA+AGG + Chr6:79143023-79143042 MsG0680034037.01.T01:intron 30.0%
GAAATTGAAGCTGATTACAT+TGG + Chr6:79145550-79145569 MsG0680034037.01.T01:CDS 30.0%
GAAGATGACAAAGAATATGT+GGG + Chr6:79143189-79143208 MsG0680034037.01.T01:CDS 30.0%
GACAAACCTATAATACGAAT+TGG + Chr6:79144496-79144515 MsG0680034037.01.T01:intron 30.0%
GATAAATAAGAATATTGGGG+TGG + Chr6:79142010-79142029 MsG0680034037.01.T01:CDS 30.0%
GTAAAGTAGTGCAACTTAAT+TGG - Chr6:79144628-79144647 None:intergenic 30.0%
GTACCGTTTCTTAAAATCAA+GGG + Chr6:79143871-79143890 MsG0680034037.01.T01:intron 30.0%
TACACAAATGTGGTGAATTA+TGG + Chr6:79145459-79145478 MsG0680034037.01.T01:intron 30.0%
TGTACCGTTTCTTAAAATCA+AGG + Chr6:79143870-79143889 MsG0680034037.01.T01:intron 30.0%
TTCGTATTATAGGTTTGTCA+TGG - Chr6:79144495-79144514 None:intergenic 30.0%
TTTACATACACAGACAAGTA+TGG - Chr6:79145870-79145889 None:intergenic 30.0%
TTTAGGAGATTAGACAAAAG+GGG + Chr6:79142080-79142099 MsG0680034037.01.T01:intron 30.0%
! AATAATTACCTTCTGGAGAA+AGG - Chr6:79143295-79143314 None:intergenic 30.0%
! AATATTAGAGTTGGTTGTCA+AGG + Chr6:79141921-79141940 MsG0680034037.01.T01:CDS 30.0%
! ATAGGTAATGTTTGTTAGAC+AGG + Chr6:79143388-79143407 MsG0680034037.01.T01:intron 30.0%
! TTAAAATGCTGCACATTTTG+TGG - Chr6:79142148-79142167 None:intergenic 30.0%
!! AACTGTGTATTTTGGGAATA+TGG + Chr6:79142246-79142265 MsG0680034037.01.T01:CDS 30.0%
!! AATGCATTGACTGAAAATGA+AGG + Chr6:79142538-79142557 MsG0680034037.01.T01:intron 30.0%
!! AGAAGTATTCATTAGCCAAA+TGG + Chr6:79144548-79144567 MsG0680034037.01.T01:intron 30.0%
!! ATGCATTGACTGAAAATGAA+GGG + Chr6:79142539-79142558 MsG0680034037.01.T01:intron 30.0%
!! CAACCCTTGATTTTAAGAAA+CGG - Chr6:79143877-79143896 None:intergenic 30.0%
!!! GCTTCATTTTAACTTCTTTC+TGG + Chr6:79145117-79145136 MsG0680034037.01.T01:intron 30.0%
AAAATGAAGGGAAAGTTGGA+GGG + Chr6:79142551-79142570 MsG0680034037.01.T01:intron 35.0%
AAACGCAACAAGAAACATGA+AGG - Chr6:79143912-79143931 None:intergenic 35.0%
AAATGTGTTCGCTTCGTATA+AGG - Chr6:79142280-79142299 None:intergenic 35.0%
AAGAAAACGAGCAGAATTAC+TGG + Chr6:79145692-79145711 MsG0680034037.01.T01:three_prime_UTR 35.0%
AAGGAGGAATAATTACCTTC+TGG - Chr6:79143302-79143321 None:intergenic 35.0%
AATCCTAGGCATGTTATGAT+TGG + Chr6:79142196-79142215 MsG0680034037.01.T01:intron 35.0%
ACCTAAAGTCTACGAAAAGT+TGG + Chr6:79145615-79145634 MsG0680034037.01.T01:CDS 35.0%
ACTGAAAATGAAGGGAAAGT+TGG + Chr6:79142547-79142566 MsG0680034037.01.T01:intron 35.0%
AGCAACTATTATTGGACATG+AGG + Chr6:79142792-79142811 MsG0680034037.01.T01:intron 35.0%
AGGAATAGAGCCAAATCATT+GGG - Chr6:79143603-79143622 None:intergenic 35.0%
ATGGTGGTTAGATAGTCAAA+TGG - Chr6:79145359-79145378 None:intergenic 35.0%
CAAGAAACATGAAGGATGTA+TGG - Chr6:79143904-79143923 None:intergenic 35.0%
CACAATGTGTTTGAATTCAC+CGG - Chr6:79146073-79146092 None:intergenic 35.0%
CCAAACAATGTTTACTCTTC+CGG + Chr6:79146051-79146070 MsG0680034037.01.T01:three_prime_UTR 35.0%
CCTAAAGTCTACGAAAAGTT+GGG + Chr6:79145616-79145635 MsG0680034037.01.T01:CDS 35.0%
CCTAAGAGGTTAGGAAAAAT+GGG + Chr6:79141981-79142000 MsG0680034037.01.T01:CDS 35.0%
GAAAACATGGTTATGCCATT+TGG - Chr6:79144566-79144585 None:intergenic 35.0%
GAAAAGTTGGGAAAAATCTC+CGG + Chr6:79145628-79145647 MsG0680034037.01.T01:CDS 35.0%
GCAGAGATAGCAACTATTAT+TGG + Chr6:79142784-79142803 MsG0680034037.01.T01:intron 35.0%
GCTTCAGAAAATTCTGTGTT+TGG + Chr6:79142490-79142509 MsG0680034037.01.T01:intron 35.0%
GGTTATAAAGAGAGAAAAGG+AGG - Chr6:79143318-79143337 None:intergenic 35.0%
GTCAAGGTGGTAACTTTAAT+GGG + Chr6:79141937-79141956 MsG0680034037.01.T01:CDS 35.0%
TACTAGAGAATTCATGCATC+AGG - Chr6:79144650-79144669 None:intergenic 35.0%
TATGGATGTAATTTCGGAGT+AGG - Chr6:79144695-79144714 None:intergenic 35.0%
TCCTAAGAGGTTAGGAAAAA+TGG + Chr6:79141980-79141999 MsG0680034037.01.T01:CDS 35.0%
TCTTCAATTCCTAAGAGGTT+AGG + Chr6:79141972-79141991 MsG0680034037.01.T01:CDS 35.0%
TGTCAAGGTGGTAACTTTAA+TGG + Chr6:79141936-79141955 MsG0680034037.01.T01:CDS 35.0%
! AATCTAAAGCTTAGAATCGC+CGG - Chr6:79145650-79145669 None:intergenic 35.0%
! AATTATTTTCTGCACAGACC+TGG + Chr6:79143765-79143784 MsG0680034037.01.T01:intron 35.0%
! AGAATTGGTTTCAGAATCCT+AGG + Chr6:79142182-79142201 MsG0680034037.01.T01:intron 35.0%
! ATGAGGTTCTTGATGACAAA+TGG + Chr6:79142589-79142608 MsG0680034037.01.T01:intron 35.0%
! ATTTGTTTCTTGTTGGACTG+TGG + Chr6:79145046-79145065 MsG0680034037.01.T01:intron 35.0%
! CGTTTTCTTCAATTCCTAAG+AGG + Chr6:79141967-79141986 MsG0680034037.01.T01:CDS 35.0%
! TGAGGTTCTTGATGACAAAT+GGG + Chr6:79142590-79142609 MsG0680034037.01.T01:intron 35.0%
! TGGTGTTGAAGGATTTCTTT+AGG + Chr6:79145773-79145792 MsG0680034037.01.T01:three_prime_UTR 35.0%
! TTTTTGCCTTCCCAATGATT+TGG + Chr6:79143590-79143609 MsG0680034037.01.T01:intron 35.0%
!! AAGCAAAAGGCATTAACCAT+AGG - Chr6:79142710-79142729 None:intergenic 35.0%
!! CCAAAGGTGTTAGCTTTAAT+GGG + Chr6:79142036-79142055 MsG0680034037.01.T01:CDS 35.0%
!! CTATGTCATCGCTTTTGTTA+CGG + Chr6:79143266-79143285 MsG0680034037.01.T01:CDS 35.0%
!! GACATAGTGTTGACAATATC+AGG - Chr6:79143253-79143272 None:intergenic 35.0%
!! GGATTCTGAAACCAATTCTT+TGG - Chr6:79142181-79142200 None:intergenic 35.0%
!! TATGTGTTGAGTTGGTCTTA+AGG - Chr6:79143627-79143646 None:intergenic 35.0%
!! TCCAAAGGTGTTAGCTTTAA+TGG + Chr6:79142035-79142054 MsG0680034037.01.T01:CDS 35.0%
!!! TAGCTTTAATGGGTTTTCGT+CGG + Chr6:79142046-79142065 MsG0680034037.01.T01:intron 35.0%
AAAGAGATGGAGAAGAGTCT+TGG + Chr6:79142313-79142332 MsG0680034037.01.T01:CDS 40.0%
AAAGTAGCCATGTCAGAACA+TGG - Chr6:79145378-79145397 None:intergenic 40.0%
AAGACTGTAAGAGAAGGACA+TGG + Chr6:79145753-79145772 MsG0680034037.01.T01:three_prime_UTR 40.0%
AAGAGATGGAGAAGAGTCTT+GGG + Chr6:79142314-79142333 MsG0680034037.01.T01:CDS 40.0%
ACACCAATCATAACATGCCT+AGG - Chr6:79142202-79142221 None:intergenic 40.0%
ACATACACAGACAAGTATGG+TGG - Chr6:79145867-79145886 None:intergenic 40.0%
AGAAGAGTAGGAAAAAGGTC+AGG + Chr6:79142616-79142635 MsG0680034037.01.T01:intron 40.0%
AGACTCTTCTCCATCTCTTT+CGG - Chr6:79142313-79142332 None:intergenic 40.0%
AGCTGAATTAGTGGAACTAG+AGG + Chr6:79143484-79143503 MsG0680034037.01.T01:intron 40.0%
AGTCATACCAAGTCCATACA+AGG - Chr6:79143794-79143813 None:intergenic 40.0%
AGTCTTAACACTTTGCTGCT+TGG + Chr6:79143127-79143146 MsG0680034037.01.T01:intron 40.0%
ATAGAGCCAAATCATTGGGA+AGG - Chr6:79143599-79143618 None:intergenic 40.0%
ATCCTAACTCTCACACTTTC+AGG - Chr6:79142398-79142417 None:intergenic 40.0%
CAGGAATAGAGCCAAATCAT+TGG - Chr6:79143604-79143623 None:intergenic 40.0%
CCCATTAAAGCTAACACCTT+TGG - Chr6:79142039-79142058 None:intergenic 40.0%
CCGGAAGAGTAAACATTGTT+TGG - Chr6:79146054-79146073 None:intergenic 40.0%
CGGTGAATTCAAACACATTG+TGG + Chr6:79146071-79146090 MsG0680034037.01.T01:three_prime_UTR 40.0%
CTCCGAAATCAGACTCATTA+TGG - Chr6:79144985-79145004 None:intergenic 40.0%
GAAAATGAAGGGAAAGTTGG+AGG + Chr6:79142550-79142569 MsG0680034037.01.T01:intron 40.0%
GAAGATTAAACGGAAACCCT+AGG - Chr6:79145078-79145097 None:intergenic 40.0%
GCATCAACATCTATGAAGCA+CGG + Chr6:79145142-79145161 MsG0680034037.01.T01:intron 40.0%
GCATGTTATGATTGGTGTAG+TGG + Chr6:79142204-79142223 MsG0680034037.01.T01:intron 40.0%
GGTTCAGAAGAGTAGGAAAA+AGG + Chr6:79142611-79142630 MsG0680034037.01.T01:intron 40.0%
GTTATGATTGGTGTAGTGGT+AGG + Chr6:79142208-79142227 MsG0680034037.01.T01:intron 40.0%
TATTTCGCTACTCATCCATC+TGG + Chr6:79145669-79145688 MsG0680034037.01.T01:three_prime_UTR 40.0%
TCATCAAGAACCTCATCTTC+CGG - Chr6:79142585-79142604 None:intergenic 40.0%
TCTCTGATTCTGTTCAGTGT+TGG + Chr6:79144338-79144357 MsG0680034037.01.T01:intron 40.0%
TGATGTTGATCTACGAAGCA+CGG - Chr6:79145324-79145343 None:intergenic 40.0%
TGGGAAGATAGTCGTGTTTA+CGG + Chr6:79142736-79142755 MsG0680034037.01.T01:intron 40.0%
TGTCTGTTCAGTGTGTTTGT+TGG + Chr6:79144256-79144275 MsG0680034037.01.T01:intron 40.0%
! ACAAATGGGTTCAGAAGAGT+AGG + Chr6:79142604-79142623 MsG0680034037.01.T01:intron 40.0%
! ACTGAATTGGGAGATTTTGG+TGG + Chr6:79142676-79142695 MsG0680034037.01.T01:intron 40.0%
! ATCCTGAAAGTGTGAGAGTT+AGG + Chr6:79142393-79142412 MsG0680034037.01.T01:intron 40.0%
! ATTAGAGTTGGTTGTCAAGG+TGG + Chr6:79141924-79141943 MsG0680034037.01.T01:CDS 40.0%
! CATAGTCAGAGGTGTAAACT+CGG - Chr6:79143717-79143736 None:intergenic 40.0%
! CCCAACTTTTCGTAGACTTT+AGG - Chr6:79145619-79145638 None:intergenic 40.0%
! CTGTGTTTGGTGAAGAAAGT+GGG + Chr6:79142503-79142522 MsG0680034037.01.T01:intron 40.0%
! GTTAATGCCTTTTGCTTACC+TGG + Chr6:79142713-79142732 MsG0680034037.01.T01:intron 40.0%
! TCTGTGTTTGGTGAAGAAAG+TGG + Chr6:79142502-79142521 MsG0680034037.01.T01:intron 40.0%
! TGCAGCATTTTAAGCCAAGA+GGG + Chr6:79142155-79142174 MsG0680034037.01.T01:intron 40.0%
! TGCTCGAGTTATCTCGTTTT+GGG - Chr6:79143744-79143763 None:intergenic 40.0%
! TGGACTGAATTGGGAGATTT+TGG + Chr6:79142673-79142692 MsG0680034037.01.T01:intron 40.0%
!! ATATCGAAGCGTTGAAGAGA+GGG + Chr6:79142431-79142450 MsG0680034037.01.T01:intron 40.0%
!! CCCATTTTTCCTAACCTCTT+AGG - Chr6:79141984-79142003 None:intergenic 40.0%
!! GATTTTGATGCCGAAAGAGA+TGG + Chr6:79142300-79142319 MsG0680034037.01.T01:CDS 40.0%
!! GCATTTGGATGGACTGAATT+GGG + Chr6:79142664-79142683 MsG0680034037.01.T01:intron 40.0%
!! TATATCGAAGCGTTGAAGAG+AGG + Chr6:79142430-79142449 MsG0680034037.01.T01:intron 40.0%
!!! CGTCGGTTTCGAAGAATTTT+AGG + Chr6:79142063-79142082 MsG0680034037.01.T01:intron 40.0%
AACCAATTCTTTGGCCCTCT+TGG - Chr6:79142172-79142191 None:intergenic 45.0%
AAGGGAAAGTTGGAGGGAAT+TGG + Chr6:79142557-79142576 MsG0680034037.01.T01:intron 45.0%
ACACTTTCAGGATGCATTGC+AGG - Chr6:79142386-79142405 None:intergenic 45.0%
ATGGTGGCATTTCCTACAGT+TGG - Chr6:79145851-79145870 None:intergenic 45.0%
ATTGGTGTAGTGGTAGGTTC+TGG + Chr6:79142214-79142233 MsG0680034037.01.T01:intron 45.0%
CAGACAAGTGTTCCAACTGT+AGG + Chr6:79145836-79145855 MsG0680034037.01.T01:three_prime_UTR 45.0%
CCATCCAAATGCGACGTATA+AGG - Chr6:79142656-79142675 None:intergenic 45.0%
CCGAAGATGATACACAGCAA+CGG - Chr6:79143985-79144004 None:intergenic 45.0%
CCGTTGCTGTGTATCATCTT+CGG + Chr6:79143982-79144001 MsG0680034037.01.T01:intron 45.0%
CCTTATACGTCGCATTTGGA+TGG + Chr6:79142653-79142672 MsG0680034037.01.T01:intron 45.0%
CTAACCACCATGTTCTGACA+TGG + Chr6:79145368-79145387 MsG0680034037.01.T01:intron 45.0%
CTTCTATTAGTTGCATCCGC+CGG + Chr6:79145574-79145593 MsG0680034037.01.T01:CDS 45.0%
GCAACCTTATACGTCGCATT+TGG + Chr6:79142649-79142668 MsG0680034037.01.T01:intron 45.0%
GCTACACGACTCAACGTATA+GGG - Chr6:79143563-79143582 None:intergenic 45.0%
GGGAAGATAGTCGTGTTTAC+GGG + Chr6:79142737-79142756 MsG0680034037.01.T01:intron 45.0%
GGTTGAGTAAGGAGAATGTG+TGG + Chr6:79142452-79142471 MsG0680034037.01.T01:intron 45.0%
GTTGAAGAGAGGGTTGAGTA+AGG + Chr6:79142441-79142460 MsG0680034037.01.T01:intron 45.0%
TGCTACACGACTCAACGTAT+AGG - Chr6:79143564-79143583 None:intergenic 45.0%
! AATATTGGGGTGGGTTCCAA+AGG + Chr6:79142020-79142039 MsG0680034037.01.T01:CDS 45.0%
! AATGCCTTTTGCTTACCTGG+TGG + Chr6:79142716-79142735 MsG0680034037.01.T01:intron 45.0%
! AGAGAAGGACATGGTGTTGA+AGG + Chr6:79145762-79145781 MsG0680034037.01.T01:three_prime_UTR 45.0%
! AGATGAGGAAGGCGGTTTTA+AGG + Chr6:79142349-79142368 MsG0680034037.01.T01:intron 45.0%
! ATGCCTTTTGCTTACCTGGT+GGG + Chr6:79142717-79142736 MsG0680034037.01.T01:intron 45.0%
! CACTTTGCTGCTTGGTGATT+AGG + Chr6:79143135-79143154 MsG0680034037.01.T01:intron 45.0%
! CTGCTCGAGTTATCTCGTTT+TGG - Chr6:79143745-79143764 None:intergenic 45.0%
! GTGCAGCATTTTAAGCCAAG+AGG + Chr6:79142154-79142173 MsG0680034037.01.T01:intron 45.0%
! GTTTGGTGAAGAAAGTGGGA+AGG + Chr6:79142507-79142526 MsG0680034037.01.T01:intron 45.0%
! TCTGCTCGTTTTCTTCCAGA+TGG - Chr6:79145687-79145706 None:intergenic 45.0%
! TTGCTGCTTGGTGATTAGGT+TGG + Chr6:79143139-79143158 MsG0680034037.01.T01:intron 45.0%
! TTTTCTTGCGTTTGCGTGTC+AGG + Chr6:79144049-79144068 MsG0680034037.01.T01:intron 45.0%
!! AGAATTACTGGCTCAAGCTC+AGG + Chr6:79145704-79145723 MsG0680034037.01.T01:three_prime_UTR 45.0%
!! CGCATTTGGATGGACTGAAT+TGG + Chr6:79142663-79142682 MsG0680034037.01.T01:intron 45.0%
!! GAGAGGGCATTACGAAAACA+TGG - Chr6:79144579-79144598 None:intergenic 45.0%
!! GATGAGGAAGGCGGTTTTAA+GGG + Chr6:79142350-79142369 MsG0680034037.01.T01:intron 45.0%
!! TCGAGTTATCTCGTTTTGGG+AGG - Chr6:79143741-79143760 None:intergenic 45.0%
!! TGATTAGGTTGGACATGCTG+TGG + Chr6:79143150-79143169 MsG0680034037.01.T01:intron 45.0%
!! TGGACTGTGGATTAGTCCTA+GGG + Chr6:79145059-79145078 MsG0680034037.01.T01:intron 45.0%
!! TGTTGAGTTGGTCTTAAGGC+AGG - Chr6:79143623-79143642 None:intergenic 45.0%
!! TTGGACTGTGGATTAGTCCT+AGG + Chr6:79145058-79145077 MsG0680034037.01.T01:intron 45.0%
!! TTTGGTGGTGAAGGATCCTA+TGG + Chr6:79142691-79142710 MsG0680034037.01.T01:intron 45.0%
!! TTTTGGGAGGTCATAGTCAG+AGG - Chr6:79143728-79143747 None:intergenic 45.0%
!!! ATGAGGAAGGCGGTTTTAAG+GGG + Chr6:79142351-79142370 MsG0680034037.01.T01:intron 45.0%
!!! TTGGGAGATTTTGGTGGTGA+AGG + Chr6:79142682-79142701 MsG0680034037.01.T01:intron 45.0%
!! GTATATTTATTTATTTATTA+TGG + Chr6:79145481-79145500 MsG0680034037.01.T01:intron 5.0%
AACACGACTATCTTCCCACC+AGG - Chr6:79142734-79142753 None:intergenic 50.0%
AAGTTGGAGGGAATTGGCAC+CGG + Chr6:79142563-79142582 MsG0680034037.01.T01:intron 50.0%
AATGCAACACTCAGCATGCG+AGG - Chr6:79144016-79144035 None:intergenic 50.0%
ACAGACCTGGATGCCTTGTA+TGG + Chr6:79143778-79143797 MsG0680034037.01.T01:intron 50.0%
AGCCAAGAGGGCCAAAGAAT+TGG + Chr6:79142167-79142186 MsG0680034037.01.T01:intron 50.0%
CATCTTCTCAGCACTGTGTC+TGG - Chr6:79143176-79143195 None:intergenic 50.0%
CTGGATGCCTTGTATGGACT+TGG + Chr6:79143784-79143803 MsG0680034037.01.T01:intron 50.0%
CTTCCCACCAGGTAAGCAAA+AGG - Chr6:79142723-79142742 None:intergenic 50.0%
GACACAAACCGGAAACGACA+CGG + Chr6:79145170-79145189 MsG0680034037.01.T01:intron 50.0%
GCACGGATACAGACACAAAC+CGG + Chr6:79145159-79145178 MsG0680034037.01.T01:intron 50.0%
GTAGCCATGTCAGAACATGG+TGG - Chr6:79145375-79145394 None:intergenic 50.0%
TACGGCTACCTTTCTCCAGA+AGG + Chr6:79143284-79143303 MsG0680034037.01.T01:CDS 50.0%
TAGGAAAAAGGTCAGGAGCG+AGG + Chr6:79142623-79142642 MsG0680034037.01.T01:intron 50.0%
! CAAGTCCATACAAGGCATCC+AGG - Chr6:79143786-79143805 None:intergenic 50.0%
! CGAGTTTGAGATGAGGAAGG+CGG + Chr6:79142341-79142360 MsG0680034037.01.T01:CDS 50.0%
! GAGCGAGTTTGAGATGAGGA+AGG + Chr6:79142338-79142357 MsG0680034037.01.T01:CDS 50.0%
! TAGACTTTAGGTGCCACACG+TGG - Chr6:79145607-79145626 None:intergenic 50.0%
!! GTCAATGTCCGTGTCGTTTC+CGG - Chr6:79145181-79145200 None:intergenic 50.0%
!! TACAAGTGTCGGTGTCGTGT+CGG + Chr6:79145246-79145265 MsG0680034037.01.T01:intron 50.0%
ACAGCAACGGCATTGCACAC+AGG - Chr6:79143972-79143991 None:intergenic 55.0%
CAACACTCAGCATGCGAGGA+AGG - Chr6:79144012-79144031 None:intergenic 55.0%
GATTAGACGTGTCCCGGTGT+CGG - Chr6:79145291-79145310 None:intergenic 55.0%
TACGAAGCACGGACACTCCT+CGG - Chr6:79145313-79145332 None:intergenic 55.0%
! ACTGGCTCAAGCTCAGGTGA+TGG + Chr6:79145710-79145729 MsG0680034037.01.T01:three_prime_UTR 55.0%
! GGAATTGGCACCGGAAGATG+AGG + Chr6:79142572-79142591 MsG0680034037.01.T01:intron 55.0%
! GGGAGAGCGAGTTTGAGATG+AGG + Chr6:79142334-79142353 MsG0680034037.01.T01:CDS 55.0%
! TCCTCGGATTAGACGTGTCC+CGG - Chr6:79145297-79145316 None:intergenic 55.0%
ACACGACACGTGTCCGACAC+CGG + Chr6:79145275-79145294 MsG0680034037.01.T01:intron 60.0%
ACCGGGACACGTCTAATCCG+AGG + Chr6:79145293-79145312 MsG0680034037.01.T01:intron 60.0%
TGCCACACGTGGATCGTAGC+CGG - Chr6:79145596-79145615 None:intergenic 60.0%
!! TGTCGGTGTCGTGTCGGTGT+CGG + Chr6:79145252-79145271 MsG0680034037.01.T01:intron 60.0%
CACACGTGGATCGTAGCCGG+CGG - Chr6:79145593-79145612 None:intergenic 65.0%
CACGACACGTGTCCGACACC+GGG + Chr6:79145276-79145295 MsG0680034037.01.T01:intron 65.0%
! CGCCGGCTACGATCCACGTG+TGG + Chr6:79145591-79145610 MsG0680034037.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 79141900 79146160 79141900 ID=MsG0680034037.01;Name=MsG0680034037.01
Chr6 mRNA 79141900 79146160 79141900 ID=MsG0680034037.01.T01;Parent=MsG0680034037.01;Name=MsG0680034037.01.T01;_AED=0.25;_eAED=0.34;_QI=0|0.33|0.5|1|0.66|0.75|4|494|186
Chr6 exon 79141900 79142057 79141900 ID=MsG0680034037.01.T01:exon:1491;Parent=MsG0680034037.01.T01
Chr6 exon 79142230 79142362 79142230 ID=MsG0680034037.01.T01:exon:1492;Parent=MsG0680034037.01.T01
Chr6 exon 79143157 79143305 79143157 ID=MsG0680034037.01.T01:exon:1493;Parent=MsG0680034037.01.T01
Chr6 exon 79145546 79146160 79145546 ID=MsG0680034037.01.T01:exon:1494;Parent=MsG0680034037.01.T01
Chr6 CDS 79141900 79142057 79141900 ID=MsG0680034037.01.T01:cds;Parent=MsG0680034037.01.T01
Chr6 CDS 79142230 79142362 79142230 ID=MsG0680034037.01.T01:cds;Parent=MsG0680034037.01.T01
Chr6 CDS 79143157 79143305 79143157 ID=MsG0680034037.01.T01:cds;Parent=MsG0680034037.01.T01
Chr6 CDS 79145546 79145666 79145546 ID=MsG0680034037.01.T01:cds;Parent=MsG0680034037.01.T01
Chr6 three_prime_UTR 79145667 79146160 79145667 ID=MsG0680034037.01.T01:three_prime_utr;Parent=MsG0680034037.01.T01
Gene Sequence

>MsG0680034037.01.T01

ATGGGTTTTGAAAATAATAAGAATATTAGAGTTGGTTGTCAAGGTGGTAACTTTAATGGGTTTTCTTCGTTTTCTTCAATTCCTAAGAGGTTAGGAAAAATGGGTTTTGAGATAAATAAGAATATTGGGGTGGGTTCCAAAGGTGTTAGCTTTAATGGGTTCTGGCGTTTTTATAACTGTGTATTTTGGGAATATGGAAACTGTTCCTTATACGAAGCGAACACATTTGATTTTGATGCCGAAAGAGATGGAGAAGAGTCTTGGGAGAGCGAGTTTGAGATGAGGAAGGCGGTTGGACATGCTGTGGCCAGACACAGTGCTGAGAAGATGACAAAGAATATGTGGGTTTTAATTCTAAACTTCGTACTTTATCAATTCGTCACACCTGATATTGTCAACACTATGTCATCGCTTTTGTTACGGCTACCTTTCTCCAGAAGGATGGAAATTGAAGCTGATTACATTGGTCTTCTATTAGTTGCATCCGCCGGCTACGATCCACGTGTGGCACCTAAAGTCTACGAAAAGTTGGGAAAAATCTCCGGCGATTCTAAGCTTTAG

Protein sequence

>MsG0680034037.01.T01

MGFENNKNIRVGCQGGNFNGFSSFSSIPKRLGKMGFEINKNIGVGSKGVSFNGFWRFYNCVFWEYGNCSLYEANTFDFDAERDGEESWESEFEMRKAVGHAVARHSAEKMTKNMWVLILNFVLYQFVTPDIVNTMSSLLLRLPFSRRMEIEADYIGLLLVASAGYDPRVAPKVYEKLGKISGDSKL*