AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030615.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030615.01.T01 MTR_6g007770 93.800 629 31 1 1 629 1 621 0.0 1226
MsG0680030615.01.T01 MTR_6g007767 81.833 622 108 2 10 629 25 643 0.0 1078
MsG0680030615.01.T01 MTR_6g007763 78.652 623 129 3 10 629 23 644 0.0 1019
MsG0680030615.01.T01 MTR_6g007767 81.569 548 96 2 10 555 25 569 0.0 942
MsG0680030615.01.T01 MTR_6g007767 83.268 508 85 0 122 629 1 508 0.0 904
MsG0680030615.01.T01 MTR_8g106800 63.934 610 213 2 20 626 24 629 0.0 791
MsG0680030615.01.T01 MTR_6g007767 81.203 399 70 2 10 406 25 420 0.0 692
MsG0680030615.01.T01 MTR_6g007767 80.750 400 72 2 10 407 25 421 0.0 690
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030615.01.T01 AT3G01420 74.793 603 151 1 28 629 37 639 0.0 950
MsG0680030615.01.T01 AT1G73680 63.680 625 224 3 2 626 7 628 0.0 817
MsG0680030615.01.T01 AT1G73680 62.461 634 226 5 2 626 7 637 0.0 803
MsG0680030615.01.T01 AT1G73680 66.409 518 173 1 109 626 3 519 0.0 717
MsG0680030615.01.T01 AT1G73680 66.947 475 156 1 152 626 1 474 0.0 665

Find 169 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTACTCCATCTTCATTT+TGG 0.160377 6:-6106841 None:intergenic
TTTATTTAGGTATGGATTAT+TGG 0.165781 6:+6107756 MsG0680030615.01.T01:intron
CATTGTGTTCTTGAATAAAA+AGG 0.172248 6:-6106913 None:intergenic
TCTCTTGGGCCTATTGTATT+TGG 0.181493 6:+6105125 MsG0680030615.01.T01:CDS
CTTCAAGTGCTTTCTCTGTT+TGG 0.185040 6:+6109198 MsG0680030615.01.T01:CDS
TATTGATACCTATTTCAAAA+TGG 0.218562 6:+6108530 MsG0680030615.01.T01:CDS
GGAATTGGATTGTCTTTGTT+TGG 0.229305 6:-6109230 None:intergenic
TGCAAGAGCATTAGTGTCTA+TGG 0.246157 6:+6108227 MsG0680030615.01.T01:CDS
GAATTGGATTGTCTTTGTTT+GGG 0.253532 6:-6109229 None:intergenic
TTAAATAGGTCATATTAAAT+AGG 0.260507 6:-6109382 None:intergenic
ATACAAAGTACTGAAATAAA+AGG 0.260543 6:-6109668 None:intergenic
GTTCTATATGGATAATCATT+AGG 0.263833 6:-6105222 None:intergenic
TTATTTAGGTATGGATTATT+GGG 0.264621 6:+6107757 MsG0680030615.01.T01:intron
ATGGAATCATATCCATTTCT+TGG 0.267583 6:-6109693 None:intergenic
TTCAAGTGCTTTCTCTGTTT+GGG 0.278891 6:+6109199 MsG0680030615.01.T01:CDS
AAAGTATTGGAAGAGGTATA+TGG 0.283665 6:+6108583 MsG0680030615.01.T01:CDS
AATTCTTCAGTTAGAGAGTA+TGG 0.287850 6:-6107868 None:intergenic
GAAGATGGAGTAGCAATTTC+AGG 0.292686 6:+6106848 MsG0680030615.01.T01:CDS
TTGCATCCTCTCCTTGTTCA+AGG 0.294195 6:+6109606 MsG0680030615.01.T01:three_prime_UTR
TACAAATGAGGTCGAGCTTA+TGG 0.299281 6:-6109740 None:intergenic
TCGCAGGCATGCGTGGAAAT+TGG 0.299707 6:+6107404 MsG0680030615.01.T01:CDS
TGAGGAGACATACACCAAAA+AGG 0.300584 6:+6109091 MsG0680030615.01.T01:CDS
TCTTCTAAATTGATTATATC+TGG 0.301658 6:-6108500 None:intergenic
GCACCGTTTACCTGTTCTCT+TGG 0.305249 6:+6105110 MsG0680030615.01.T01:CDS
TATGGAACACCATGATTATC+TGG 0.307899 6:-6107850 None:intergenic
TACTTTGTATTTCCAAGAAA+TGG 0.313242 6:+6109681 MsG0680030615.01.T01:three_prime_UTR
ATATAAATGGTGCAGTTTAT+AGG 0.314355 6:+6108458 MsG0680030615.01.T01:intron
TTTCCATCAGCAGTTCTATA+TGG 0.317935 6:-6105234 None:intergenic
GGTGGTAGCCACAAAACTTT+TGG 0.318774 6:+6105570 MsG0680030615.01.T01:CDS
AAGAAATTCAAGGACACGTT+TGG 0.321740 6:+6107781 MsG0680030615.01.T01:CDS
ATGGATAGTTTCCAAGTGTT+AGG 0.324477 6:-6108269 None:intergenic
TATAAATGGTGCAGTTTATA+GGG 0.329414 6:+6108459 MsG0680030615.01.T01:intron
CATCTATGTTCTGTGGTACT+AGG 0.336758 6:-6108305 None:intergenic
AGAAACTAGATTTACTAGTA+TGG 0.348818 6:-6109712 None:intergenic
TAATTAGTTGAAATTTAAAT+AGG 0.350128 6:-6109396 None:intergenic
ATACGAAGATAAAGTGGAAT+TGG 0.356112 6:-6109245 None:intergenic
ACATGATTGGATAGATCATT+TGG 0.364113 6:+6105663 MsG0680030615.01.T01:CDS
GACAAACAGCTGTAGGAGTT+AGG 0.366038 6:+6105193 MsG0680030615.01.T01:CDS
TCATTTGGAGGACACTAATC+AGG 0.369095 6:+6105678 MsG0680030615.01.T01:CDS
GAACACAACTGAGAGCTTAA+AGG 0.370793 6:+6109127 MsG0680030615.01.T01:CDS
TTCTATATGGATAATCATTA+GGG 0.374278 6:-6105221 None:intergenic
TCTTTACCGTTATGCTAGAT+TGG 0.374775 6:+6107309 MsG0680030615.01.T01:CDS
TCTATGGGTCATCAAACTTC+TGG 0.375181 6:+6108243 MsG0680030615.01.T01:CDS
CAGGTGATGTTCGTAATAGT+TGG 0.375562 6:+6106867 MsG0680030615.01.T01:CDS
CCATTGACAAGCTTGGAATA+TGG 0.378143 6:+6105088 MsG0680030615.01.T01:CDS
TTGGCATACTCTTTGATTAG+TGG 0.381268 6:-6107979 None:intergenic
AGGGATGGAAGTGTGATATA+TGG 0.381936 6:+6106740 MsG0680030615.01.T01:intron
TTCAATTTATGATACATGAT+TGG 0.382105 6:+6105650 MsG0680030615.01.T01:CDS
TCTCTCAAATGCAGAGAATC+AGG 0.385455 6:-6107922 None:intergenic
TAAAATGAGTCTCGTTAAAT+CGG 0.392195 6:+6109352 MsG0680030615.01.T01:three_prime_UTR
GAAGGAGGCTAGAGGCTGAT+AGG 0.395767 6:+6109048 MsG0680030615.01.T01:intron
GTGGCTACCACCATAGGGTC+TGG 0.402779 6:-6105559 None:intergenic
CTAGTTAATCAATTTGACTA+AGG 0.405127 6:+6109270 MsG0680030615.01.T01:exon
CAAAGATTCACACTATAGAT+TGG 0.406140 6:+6107350 MsG0680030615.01.T01:CDS
GGAAGTCAAGGGTCTTTCAT+TGG 0.407694 6:+6105285 MsG0680030615.01.T01:CDS
CACCGTTTACCTGTTCTCTT+GGG 0.408694 6:+6105111 MsG0680030615.01.T01:CDS
CTTAGTCAAATTGATTAACT+AGG 0.410409 6:-6109269 None:intergenic
AAGAATTTGTCAGTGTCTAT+AGG 0.411562 6:+6107884 MsG0680030615.01.T01:CDS
CGCTATCTTTGGTGGATTGG+TGG 0.411596 6:+6107816 MsG0680030615.01.T01:CDS
CATGTCGGTGACGCTATCTT+TGG 0.414452 6:+6107805 MsG0680030615.01.T01:CDS
CTGGAAGAAACGATGATTAG+AGG 0.420918 6:+6109569 MsG0680030615.01.T01:three_prime_UTR
ATTGATACCTATTTCAAAAT+GGG 0.422128 6:+6108531 MsG0680030615.01.T01:CDS
CATGGCAGAGAAGAAGATAA+AGG 0.425013 6:+6108642 MsG0680030615.01.T01:CDS
AGAAATTCAAGGACACGTTT+GGG 0.428428 6:+6107782 MsG0680030615.01.T01:CDS
AGGTGATGTTCGTAATAGTT+GGG 0.441309 6:+6106868 MsG0680030615.01.T01:CDS
CGTTGAAGAGGTTGTATTGT+TGG 0.442142 6:-6105167 None:intergenic
AGATCTTCATCTTCCAAGTC+CGG 0.445170 6:-6107289 None:intergenic
TACAATAGGCCCAAGAGAAC+AGG 0.445679 6:-6105120 None:intergenic
GTCGGTGACGCTATCTTTGG+TGG 0.446058 6:+6107808 MsG0680030615.01.T01:CDS
TAAGAAAGTAATCAAAGTAT+TGG 0.454515 6:+6108570 MsG0680030615.01.T01:CDS
TTAGAAAGAATACCCGGACT+TGG 0.458388 6:+6107276 MsG0680030615.01.T01:intron
ATTCCTATGAATGATCTGAT+TGG 0.459502 6:+6108168 MsG0680030615.01.T01:CDS
TGACGCTATCTTTGGTGGAT+TGG 0.460332 6:+6107813 MsG0680030615.01.T01:CDS
TTCCAGCACTTTCATTGAAA+GGG 0.464817 6:-6105266 None:intergenic
ATTCACTCCATTGACAAGCT+TGG 0.465544 6:+6105081 MsG0680030615.01.T01:CDS
CTTCCAGCACTTTCATTGAA+AGG 0.467301 6:-6105267 None:intergenic
GGTTGTATTGTTGGTGAAGA+TGG 0.472509 6:-6105158 None:intergenic
TGAGTGTGTGGCAACTCATC+TGG 0.473711 6:+6109550 MsG0680030615.01.T01:three_prime_UTR
GTCTAATGGCCAAATACAAT+AGG 0.476494 6:-6105134 None:intergenic
GACCCTTTCAATGAAAGTGC+TGG 0.479861 6:+6105264 MsG0680030615.01.T01:CDS
AAGTATTGGAAGAGGTATAT+GGG 0.482688 6:+6108584 MsG0680030615.01.T01:CDS
CTAGTACCACAGAACATAGA+TGG 0.488409 6:+6108306 MsG0680030615.01.T01:CDS
GAGGAGCTTGATACACTAGT+AGG 0.488654 6:+6108616 MsG0680030615.01.T01:CDS
AGTCCAATCAGATCATTCAT+AGG 0.489257 6:-6108171 None:intergenic
TATTCCTTGTCATGGCATCT+AGG 0.490057 6:+6108695 MsG0680030615.01.T01:CDS
CCATATTCCAAGCTTGTCAA+TGG 0.491674 6:-6105088 None:intergenic
TGGATAGTTTCCAAGTGTTA+GGG 0.492607 6:-6108268 None:intergenic
ACTTCTGGTGCCCTAACACT+TGG 0.493264 6:+6108258 MsG0680030615.01.T01:CDS
ATGGCAGAGAAGAAGATAAA+GGG 0.494420 6:+6108643 MsG0680030615.01.T01:CDS
ACTAGGTTTCTGAGAAATGA+TGG 0.495166 6:-6108288 None:intergenic
AATTGGATTGTCTTTGTTTG+GGG 0.496370 6:-6109228 None:intergenic
ACCTTGTCCTTCTGATCCAC+AGG 0.498358 6:-6105321 None:intergenic
ACCCTTATCCAAAATGAAGA+TGG 0.500959 6:+6106833 MsG0680030615.01.T01:CDS
TCAATGTGTTAGCAGCTGCT+TGG 0.503391 6:+6105626 MsG0680030615.01.T01:CDS
GGCCCAAGAGAACAGGTAAA+CGG 0.506089 6:-6105113 None:intergenic
CTGTTTGTCCAACGTTGAAG+AGG 0.509107 6:-6105179 None:intergenic
AATGAAAGTGCTGGAAGTCA+AGG 0.509134 6:+6105273 MsG0680030615.01.T01:CDS
ACAAACAGCTGTAGGAGTTA+GGG 0.512018 6:+6105194 MsG0680030615.01.T01:CDS
CTAGGAATACGAAGATAAAG+TGG 0.513359 6:-6109251 None:intergenic
ATTATTGGGGAAGAAATTCA+AGG 0.514441 6:+6107771 MsG0680030615.01.T01:CDS
TACAAAGTACTGAAATAAAA+GGG 0.515511 6:-6109667 None:intergenic
GTTGTTGAAGCCAGACCCTA+TGG 0.516727 6:+6105549 MsG0680030615.01.T01:intron
GCATACTCTTTGATTAGTGG+TGG 0.519980 6:-6107976 None:intergenic
GTGATTGATCGTCACCATCC+AGG 0.520313 6:+6109152 MsG0680030615.01.T01:CDS
AAGACAAAGGAAATTCCAAC+GGG 0.522014 6:+6105940 MsG0680030615.01.T01:CDS
AGTAATCAAAGTATTGGAAG+AGG 0.523415 6:+6108576 MsG0680030615.01.T01:CDS
TATAGTGATGAATAAAACTA+AGG 0.524249 6:+6109512 MsG0680030615.01.T01:three_prime_UTR
GATCTTCATCTTCCAAGTCC+GGG 0.528153 6:-6107288 None:intergenic
GCAAGAGCATTAGTGTCTAT+GGG 0.528313 6:+6108228 MsG0680030615.01.T01:CDS
ATGAATAAACCAGATAATCA+TGG 0.529809 6:+6107841 MsG0680030615.01.T01:CDS
AAACACAAAGGAAGAAGATA+AGG 0.532191 6:-6109634 None:intergenic
AAAACTGACACTTTGCTCGC+AGG 0.535390 6:+6107388 MsG0680030615.01.T01:CDS
AGAAACGATGATTAGAGGGT+TGG 0.538340 6:+6109574 MsG0680030615.01.T01:three_prime_UTR
TATCCATATAGAACTGCTGA+TGG 0.540566 6:+6105231 MsG0680030615.01.T01:CDS
ACTTTGCTCGCAGGCATGCG+TGG 0.541499 6:+6107397 MsG0680030615.01.T01:CDS
AGTGTGAGGACATTCAAAGA+TGG 0.548437 6:+6106785 MsG0680030615.01.T01:CDS
TATTCTTCCTGTGGATCAGA+AGG 0.548821 6:+6105314 MsG0680030615.01.T01:CDS
CAATACAACCTCTTCAACGT+TGG 0.548944 6:+6105171 MsG0680030615.01.T01:CDS
TTGGTGAAGATGGCGTCTAA+TGG 0.550915 6:-6105148 None:intergenic
GGTTTCTATGAGATCAAGAC+TGG 0.556307 6:+6105961 MsG0680030615.01.T01:CDS
CAGTTTATAGGGATAGAGAG+AGG 0.556436 6:+6108470 MsG0680030615.01.T01:intron
GCTATCTTTGGTGGATTGGT+GGG 0.556873 6:+6107817 MsG0680030615.01.T01:CDS
GGTATATGGGAATGATGTTG+AGG 0.562423 6:+6108597 MsG0680030615.01.T01:CDS
AATGATCTGATTGGACTACC+AGG 0.562984 6:+6108177 MsG0680030615.01.T01:CDS
GTGTGAGGACATTCAAAGAT+GGG 0.566520 6:+6106786 MsG0680030615.01.T01:CDS
AGAGATATATCTGCCACCCC+AGG 0.569935 6:+6107940 MsG0680030615.01.T01:CDS
ATTCAAGTTCTTGAAGACAA+AGG 0.574896 6:+6105927 MsG0680030615.01.T01:CDS
ATTCTTACCACCAAGGTGTA+CGG 0.577040 6:-6105996 None:intergenic
TGGAAGAAATATTCTTCCTG+TGG 0.579019 6:+6105305 MsG0680030615.01.T01:CDS
TGATGAATAAAACTAAGGAT+AGG 0.579716 6:+6109517 MsG0680030615.01.T01:three_prime_UTR
GATGTTCGTAATAGTTGGGC+TGG 0.581972 6:+6106872 MsG0680030615.01.T01:CDS
TGCTGTTTGTGATACTCTCA+AGG 0.583075 6:+6106934 MsG0680030615.01.T01:CDS
TTGATCTCATAGAAACCCGT+TGG 0.589718 6:-6105955 None:intergenic
TGGAAGAAACGATGATTAGA+GGG 0.593038 6:+6109570 MsG0680030615.01.T01:three_prime_UTR
TGCAAATCCTATCGAGGACA+AGG 0.593780 6:-6108208 None:intergenic
TGATTGGATAGATCATTTGG+AGG 0.594755 6:+6105666 MsG0680030615.01.T01:CDS
TCTGTGCCATCTATGTTCTG+TGG 0.595744 6:-6108312 None:intergenic
CATTGGCTTGCAACTTCACG+TGG 0.599180 6:-6105892 None:intergenic
CAAACATCCGTACACCTTGG+TGG 0.599441 6:+6105989 MsG0680030615.01.T01:CDS
TATTTAGGTATGGATTATTG+GGG 0.600656 6:+6107758 MsG0680030615.01.T01:intron
GATTAATTACACATGTAGCA+AGG 0.602751 6:-6104913 None:intergenic
GAAGACAAAGGAAATTCCAA+CGG 0.603567 6:+6105939 MsG0680030615.01.T01:CDS
ATATGTTTATCTTCATTCTG+CGG 0.603615 6:+6104862 MsG0680030615.01.T01:CDS
CACAAAGGAAGAAGATAAGG+TGG 0.606753 6:-6109631 None:intergenic
CACAGAAAGATCTGATCATG+TGG 0.608280 6:+6108329 MsG0680030615.01.T01:CDS
TGATACACTAGTAGGTCTCA+TGG 0.608626 6:+6108624 MsG0680030615.01.T01:CDS
ATGAAAGTGCTGGAAGTCAA+GGG 0.608733 6:+6105274 MsG0680030615.01.T01:CDS
ACTTTATTAGAAAGAATACC+CGG 0.610326 6:+6107270 MsG0680030615.01.T01:intron
ATGCAAACATCCGTACACCT+TGG 0.610700 6:+6105986 MsG0680030615.01.T01:CDS
ATCCAGGAATGACAGAAAAG+TGG 0.610750 6:+6109168 MsG0680030615.01.T01:CDS
AAGTCACCAATCTAGCATAA+CGG 0.612230 6:-6107315 None:intergenic
TGCACTTTGAAGGAGGCTAG+AGG 0.616682 6:+6109040 MsG0680030615.01.T01:intron
ATTGGATTGTCTTTGTTTGG+GGG 0.624854 6:-6109227 None:intergenic
TTTCACAAGCAACTTCAATG+AGG 0.625396 6:+6109073 MsG0680030615.01.T01:CDS
TCCTGTGGATCAGAAGGACA+AGG 0.625807 6:+6105320 MsG0680030615.01.T01:CDS
TTTACCTAGATGCCATGACA+AGG 0.626815 6:-6108699 None:intergenic
AAGGACACGTTTGGGCATGT+CGG 0.629216 6:+6107790 MsG0680030615.01.T01:CDS
ATAAGGTGGAACCTTGAACA+AGG 0.632563 6:-6109617 None:intergenic
AACGTTGGACAAACAGCTGT+AGG 0.633142 6:+6105186 MsG0680030615.01.T01:CDS
TGCTCTTGCAAATCCTATCG+AGG 0.634463 6:-6108214 None:intergenic
TGAGTCTCGTTAAATCGGTG+TGG 0.635043 6:+6109357 MsG0680030615.01.T01:three_prime_UTR
GGAAAATATTCTTACCACCA+AGG 0.641196 6:-6106003 None:intergenic
GGAATAATGAAATGAGTGTG+TGG 0.650697 6:+6109538 MsG0680030615.01.T01:three_prime_UTR
GTGGAACCTTGAACAAGGAG+AGG 0.652085 6:-6109612 None:intergenic
TCAAATGCAGAGAATCAGGT+AGG 0.656077 6:-6107918 None:intergenic
AAGATCTGATCATGTGGACA+TGG 0.657118 6:+6108335 MsG0680030615.01.T01:CDS
GTTGAAGCCAGACCCTATGG+TGG 0.686319 6:+6105552 MsG0680030615.01.T01:CDS
GGAAAAGTACTAAAACACAA+AGG 0.704580 6:-6109646 None:intergenic
TCACACTATAGATTGGACTG+TGG 0.742224 6:+6107357 MsG0680030615.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTATATCAAAAAAATTAT+TGG - Chr6:6105736-6105755 None:intergenic 10.0%
!! TAATTAGTTGAAATTTAAAT+AGG - Chr6:6109399-6109418 None:intergenic 10.0%
!!! ATTTAATTAGTATATTTTGT+CGG - Chr6:6107625-6107644 None:intergenic 10.0%
!!! CAAAAAATTTGATTTTATTT+AGG + Chr6:6107743-6107762 MsG0680030615.01.T01:intron 10.0%
!!! TAATATTTCTTTAAGATAAT+TGG + Chr6:6108859-6108878 MsG0680030615.01.T01:intron 10.0%
!!! TTTTATATTCATTAATTATG+TGG + Chr6:6107561-6107580 MsG0680030615.01.T01:intron 10.0%
!! AATTACTAGACAAAATTATA+TGG - Chr6:6106644-6106663 None:intergenic 15.0%
!! ACACATAAAAAAAAATGAAA+TGG - Chr6:6108407-6108426 None:intergenic 15.0%
!! ATACATATATGATTAAAGAA+TGG + Chr6:6106055-6106074 MsG0680030615.01.T01:intron 15.0%
!! ATTAAAGATTGTGTTAAAAA+CGG + Chr6:6109415-6109434 MsG0680030615.01.T01:three_prime_UTR 15.0%
!! ATTAGAGTTTAATAATTGTA+CGG - Chr6:6108909-6108928 None:intergenic 15.0%
!! TTAAATAGGTCATATTAAAT+AGG - Chr6:6109385-6109404 None:intergenic 15.0%
!! TTATAATGTGATCATATAAA+TGG + Chr6:6108445-6108464 MsG0680030615.01.T01:intron 15.0%
!! TTTCTATACTTATATTCTTT+AGG - Chr6:6107688-6107707 None:intergenic 15.0%
!!! AAAAAAAGTTATATCTCTTT+TGG + Chr6:6108134-6108153 MsG0680030615.01.T01:intron 15.0%
!!! AAATCAAATTTTTTGAAACA+TGG - Chr6:6107738-6107757 None:intergenic 15.0%
!!! AATTTGATTTTATTTAGGTA+TGG + Chr6:6107748-6107767 MsG0680030615.01.T01:intron 15.0%
!!! ATTGTTGTTTTTATATATCT+AGG + Chr6:6106617-6106636 MsG0680030615.01.T01:intron 15.0%
!!! CTATATGAAATTCTTTTTAA+TGG + Chr6:6105046-6105065 MsG0680030615.01.T01:intron 15.0%
!!! TAATTTTTATAAAGTTCTCA+AGG + Chr6:6108925-6108944 MsG0680030615.01.T01:intron 15.0%
!!! TATAGTCTTAAAAAGTTTTA+GGG - Chr6:6105506-6105525 None:intergenic 15.0%
!!! TTTTCAAAAAATAAAAAGTG+TGG + Chr6:6105459-6105478 MsG0680030615.01.T01:intron 15.0%
!! AATATCAATGCAGTTAATAA+GGG - Chr6:6108035-6108054 None:intergenic 20.0%
!! AATTTCATATAGTTAGTTAG+AGG - Chr6:6105038-6105057 None:intergenic 20.0%
!! ACTTTAGTTAAGAGAATATT+TGG + Chr6:6105396-6105415 MsG0680030615.01.T01:intron 20.0%
!! AGATATATGTATTACACTTA+CGG - Chr6:6107495-6107514 None:intergenic 20.0%
!! ATTGATACCTATTTCAAAAT+GGG + Chr6:6108531-6108550 MsG0680030615.01.T01:CDS 20.0%
!! ATTGTGTTCTTGAATAAAAA+GGG - Chr6:6106915-6106934 None:intergenic 20.0%
!! CATGAAACTATATGATAAAA+GGG + Chr6:6106721-6106740 MsG0680030615.01.T01:intron 20.0%
!! CTAGTAAAATAAACACATTA+TGG + Chr6:6109000-6109019 MsG0680030615.01.T01:intron 20.0%
!! TAAGAAAGTAATCAAAGTAT+TGG + Chr6:6108570-6108589 MsG0680030615.01.T01:CDS 20.0%
!! TAATATCAATGCAGTTAATA+AGG - Chr6:6108036-6108055 None:intergenic 20.0%
!! TATAGTGATGAATAAAACTA+AGG + Chr6:6109512-6109531 MsG0680030615.01.T01:three_prime_UTR 20.0%
!! TATGAGAATCTATAATATGA+TGG + Chr6:6105760-6105779 MsG0680030615.01.T01:intron 20.0%
!! TATTGATACCTATTTCAAAA+TGG + Chr6:6108530-6108549 MsG0680030615.01.T01:CDS 20.0%
!! TCTTCTAAATTGATTATATC+TGG - Chr6:6108503-6108522 None:intergenic 20.0%
!! TTATATATAAATGATTGCGA+TGG - Chr6:6106193-6106212 None:intergenic 20.0%
!! TTCAATTTATGATACATGAT+TGG + Chr6:6105650-6105669 MsG0680030615.01.T01:CDS 20.0%
!! TTCTATATGGATAATCATTA+GGG - Chr6:6105224-6105243 None:intergenic 20.0%
!!! ACTTTTTAAGACTATACAAT+TGG + Chr6:6105510-6105529 MsG0680030615.01.T01:intron 20.0%
!!! ATACAAAGTACTGAAATAAA+AGG - Chr6:6109671-6109690 None:intergenic 20.0%
!!! GTATAGTCTTAAAAAGTTTT+AGG - Chr6:6105507-6105526 None:intergenic 20.0%
!!! TACAAAGTACTGAAATAAAA+GGG - Chr6:6109670-6109689 None:intergenic 20.0%
!!! TGAAATGGTCTTAAAAATAA+AGG - Chr6:6108392-6108411 None:intergenic 20.0%
!!! TTAGTTTTATTCATCACTAT+AGG - Chr6:6109513-6109532 None:intergenic 20.0%
!!! TTATTTAGGTATGGATTATT+GGG + Chr6:6107757-6107776 MsG0680030615.01.T01:intron 20.0%
!!! TTTATTTAGGTATGGATTAT+TGG + Chr6:6107756-6107775 MsG0680030615.01.T01:intron 20.0%
! AAACTATATGATAAAAGGGA+TGG + Chr6:6106725-6106744 MsG0680030615.01.T01:intron 25.0%
! AAACTCGAAAATTAACTAGA+GGG - Chr6:6107460-6107479 None:intergenic 25.0%
! AAGTTAAAAATATCAGAGGA+TGG + Chr6:6106809-6106828 MsG0680030615.01.T01:CDS 25.0%
! ACTTTATTAGAAAGAATACC+CGG + Chr6:6107270-6107289 MsG0680030615.01.T01:intron 25.0%
! AGAAACTAGATTTACTAGTA+TGG - Chr6:6109715-6109734 None:intergenic 25.0%
! ATATAAATGGTGCAGTTTAT+AGG + Chr6:6108458-6108477 MsG0680030615.01.T01:intron 25.0%
! ATATGTTTATCTTCATTCTG+CGG + Chr6:6104862-6104881 MsG0680030615.01.T01:CDS 25.0%
! ATGAATAAACCAGATAATCA+TGG + Chr6:6107841-6107860 MsG0680030615.01.T01:CDS 25.0%
! CATTGTGTTCTTGAATAAAA+AGG - Chr6:6106916-6106935 None:intergenic 25.0%
! CTAGTTAATCAATTTGACTA+AGG + Chr6:6109270-6109289 MsG0680030615.01.T01:exon 25.0%
! CTTAGTCAAATTGATTAACT+AGG - Chr6:6109272-6109291 None:intergenic 25.0%
! GCATGAAACTATATGATAAA+AGG + Chr6:6106720-6106739 MsG0680030615.01.T01:intron 25.0%
! GTTCTATATGGATAATCATT+AGG - Chr6:6105225-6105244 None:intergenic 25.0%
! TAAAATGAGTCTCGTTAAAT+CGG + Chr6:6109352-6109371 MsG0680030615.01.T01:three_prime_UTR 25.0%
! TAAACTCGAAAATTAACTAG+AGG - Chr6:6107461-6107480 None:intergenic 25.0%
! TAAAGTTCTCAAGGAATATT+AGG + Chr6:6108934-6108953 MsG0680030615.01.T01:intron 25.0%
! TACTTTGTATTTCCAAGAAA+TGG + Chr6:6109681-6109700 MsG0680030615.01.T01:three_prime_UTR 25.0%
! TATAAATGGTGCAGTTTATA+GGG + Chr6:6108459-6108478 MsG0680030615.01.T01:intron 25.0%
! TCAATCAATGCTTATGTATA+TGG - Chr6:6106027-6106046 None:intergenic 25.0%
! TGACATATGTTTCAATTTCT+AGG - Chr6:6107005-6107024 None:intergenic 25.0%
! TGATGAATAAAACTAAGGAT+AGG + Chr6:6109517-6109536 MsG0680030615.01.T01:three_prime_UTR 25.0%
!! AAGAACTTGAATGATTTTAG+TGG - Chr6:6105919-6105938 None:intergenic 25.0%
!! AAGGGTATAATAAGTTATGT+TGG - Chr6:6108017-6108036 None:intergenic 25.0%
!! ATATCATCACTTTCTTTTCT+AGG - Chr6:6107053-6107072 None:intergenic 25.0%
!! ATGTTGGTGCAAAAATATTT+TGG - Chr6:6108001-6108020 None:intergenic 25.0%
!! CTGATAATGTGTTTATAAGT+GGG + Chr6:6106266-6106285 MsG0680030615.01.T01:intron 25.0%
!! TAGCACAAAGTATTATACTA+GGG + Chr6:6108962-6108981 MsG0680030615.01.T01:intron 25.0%
!! TATCATCACTTTCTTTTCTA+GGG - Chr6:6107052-6107071 None:intergenic 25.0%
!! TATCTCTTTTGGTATTATAC+AGG + Chr6:6108145-6108164 MsG0680030615.01.T01:intron 25.0%
!! TATTTAGGTATGGATTATTG+GGG + Chr6:6107758-6107777 MsG0680030615.01.T01:intron 25.0%
!! TGATAATGTGTTTATAAGTG+GGG + Chr6:6106267-6106286 MsG0680030615.01.T01:intron 25.0%
!! TTAGCACAAAGTATTATACT+AGG + Chr6:6108961-6108980 MsG0680030615.01.T01:intron 25.0%
!! TTTTGTAATATTCCTTGTCA+TGG + Chr6:6108687-6108706 MsG0680030615.01.T01:CDS 25.0%
!!! AAATCTTCCCATTTTGAAAT+AGG - Chr6:6108541-6108560 None:intergenic 25.0%
!!! AAGTGACAATTATTTTGAGA+CGG + Chr6:6108058-6108077 MsG0680030615.01.T01:intron 25.0%
!!! ATTTTTTTGTGTTAACGATC+TGG + Chr6:6107071-6107090 MsG0680030615.01.T01:intron 25.0%
!!! TGATAATGACCATTTTACAA+CGG + Chr6:6106503-6106522 MsG0680030615.01.T01:intron 25.0%
AAACACAAAGGAAGAAGATA+AGG - Chr6:6109637-6109656 None:intergenic 30.0%
AAGAATTTGTCAGTGTCTAT+AGG + Chr6:6107884-6107903 MsG0680030615.01.T01:CDS 30.0%
AATTCTTCAGTTAGAGAGTA+TGG - Chr6:6107871-6107890 None:intergenic 30.0%
ACATGATTGGATAGATCATT+TGG + Chr6:6105663-6105682 MsG0680030615.01.T01:CDS 30.0%
ACCATCTTAGAAATTGTGAT+TGG - Chr6:6106336-6106355 None:intergenic 30.0%
ACTGAGAGATAAGTAAAACA+TGG + Chr6:6107131-6107150 MsG0680030615.01.T01:intron 30.0%
AGAAAAACATTTCAGGACAA+TGG + Chr6:6105595-6105614 MsG0680030615.01.T01:CDS 30.0%
ATACGAAGATAAAGTGGAAT+TGG - Chr6:6109248-6109267 None:intergenic 30.0%
ATGGAATCATATCCATTTCT+TGG - Chr6:6109696-6109715 None:intergenic 30.0%
ATTATTGGGGAAGAAATTCA+AGG + Chr6:6107771-6107790 MsG0680030615.01.T01:CDS 30.0%
ATTCCTATGAATGATCTGAT+TGG + Chr6:6108168-6108187 MsG0680030615.01.T01:CDS 30.0%
CAAAGATTCACACTATAGAT+TGG + Chr6:6107350-6107369 MsG0680030615.01.T01:CDS 30.0%
CATGTGTAAGTTCAATTAGA+AGG - Chr6:6106698-6106717 None:intergenic 30.0%
CCACTTATAAACACATTATC+AGG - Chr6:6106268-6106287 None:intergenic 30.0%
CCATCTTAGAAATTGTGATT+GGG - Chr6:6106335-6106354 None:intergenic 30.0%
GAAAAACATTTCAGGACAAT+GGG + Chr6:6105596-6105615 MsG0680030615.01.T01:CDS 30.0%
GATTAATTACACATGTAGCA+AGG - Chr6:6104916-6104935 None:intergenic 30.0%
GGTATGTATAATGTTGATCT+TGG + Chr6:6106955-6106974 MsG0680030615.01.T01:intron 30.0%
GTTGTAAAATGGTCATTATC+AGG - Chr6:6106504-6106523 None:intergenic 30.0%
TCTTCTGAATAATTCGTCAT+TGG + Chr6:6107189-6107208 MsG0680030615.01.T01:intron 30.0%
TGGGAAGTTAAAAATATCAG+AGG + Chr6:6106805-6106824 MsG0680030615.01.T01:CDS 30.0%
TTTGGAGAGAAAAACATTTC+AGG + Chr6:6105588-6105607 MsG0680030615.01.T01:CDS 30.0%
! AATTGGATTGTCTTTGTTTG+GGG - Chr6:6109231-6109250 None:intergenic 30.0%
! AGTGTGGACTAAAAATGTTA+AGG + Chr6:6105475-6105494 MsG0680030615.01.T01:intron 30.0%
! ATTCAAGTTCTTGAAGACAA+AGG + Chr6:6105927-6105946 MsG0680030615.01.T01:CDS 30.0%
! CCTGATAATGTGTTTATAAG+TGG + Chr6:6106265-6106284 MsG0680030615.01.T01:intron 30.0%
! CGTTAATGACCATTTTACAA+CGG + Chr6:6106101-6106120 MsG0680030615.01.T01:intron 30.0%
! GAATTGGATTGTCTTTGTTT+GGG - Chr6:6109232-6109251 None:intergenic 30.0%
! TCCATCTTCATTTTGGATAA+GGG - Chr6:6106837-6106856 None:intergenic 30.0%
! TGGTCTTAAAAATAAAGGTG+TGG - Chr6:6108387-6108406 None:intergenic 30.0%
! TTTTCTCTCCAAAAGTTTTG+TGG - Chr6:6105581-6105600 None:intergenic 30.0%
!! AAAGTATTGGAAGAGGTATA+TGG + Chr6:6108583-6108602 MsG0680030615.01.T01:CDS 30.0%
!! AAGTATTGGAAGAGGTATAT+GGG + Chr6:6108584-6108603 MsG0680030615.01.T01:CDS 30.0%
!! AGTAATCAAAGTATTGGAAG+AGG + Chr6:6108576-6108595 MsG0680030615.01.T01:CDS 30.0%
!! GGAAAAGTACTAAAACACAA+AGG - Chr6:6109649-6109668 None:intergenic 30.0%
!! TGAATGATTTTAGTGGACAT+TGG - Chr6:6105912-6105931 None:intergenic 30.0%
AAGAAATTCAAGGACACGTT+TGG + Chr6:6107781-6107800 MsG0680030615.01.T01:CDS 35.0%
AAGACAAAGGAAATTCCAAC+GGG + Chr6:6105940-6105959 MsG0680030615.01.T01:CDS 35.0%
AAGTCACCAATCTAGCATAA+CGG - Chr6:6107318-6107337 None:intergenic 35.0%
ACAACGGTCTCAATGAAATT+TGG + Chr6:6106519-6106538 MsG0680030615.01.T01:intron 35.0%
ACATTAGTTCAATTCCTGAG+TGG - Chr6:6107169-6107188 None:intergenic 35.0%
ACCCTTATCCAAAATGAAGA+TGG + Chr6:6106833-6106852 MsG0680030615.01.T01:CDS 35.0%
AGAAATTCAAGGACACGTTT+GGG + Chr6:6107782-6107801 MsG0680030615.01.T01:CDS 35.0%
AGGTGATGTTCGTAATAGTT+GGG + Chr6:6106868-6106887 MsG0680030615.01.T01:CDS 35.0%
AGTCCAATCAGATCATTCAT+AGG - Chr6:6108174-6108193 None:intergenic 35.0%
ATGGATAGTTTCCAAGTGTT+AGG - Chr6:6108272-6108291 None:intergenic 35.0%
ATGGCAGAGAAGAAGATAAA+GGG + Chr6:6108643-6108662 MsG0680030615.01.T01:CDS 35.0%
ATTATCAGGTCATCACCTAT+CGG - Chr6:6106254-6106273 None:intergenic 35.0%
CTAGGAATACGAAGATAAAG+TGG - Chr6:6109254-6109273 None:intergenic 35.0%
GAAGACAAAGGAAATTCCAA+CGG + Chr6:6105939-6105958 MsG0680030615.01.T01:CDS 35.0%
GGAAAATATTCTTACCACCA+AGG - Chr6:6106006-6106025 None:intergenic 35.0%
GGAATAATGAAATGAGTGTG+TGG + Chr6:6109538-6109557 MsG0680030615.01.T01:three_prime_UTR 35.0%
GGAATTGGATTGTCTTTGTT+TGG - Chr6:6109233-6109252 None:intergenic 35.0%
GGTTCGTGGATATAAATTGT+GGG - Chr6:6106418-6106437 None:intergenic 35.0%
GTCTAATGGCCAAATACAAT+AGG - Chr6:6105137-6105156 None:intergenic 35.0%
TATCCATATAGAACTGCTGA+TGG + Chr6:6105231-6105250 MsG0680030615.01.T01:CDS 35.0%
TATGGAACACCATGATTATC+TGG - Chr6:6107853-6107872 None:intergenic 35.0%
TCACCTATCGGAAAATTAGA+TGG - Chr6:6106242-6106261 None:intergenic 35.0%
TCATTGAGACCGTTGTAAAA+TGG - Chr6:6106113-6106132 None:intergenic 35.0%
TCTTTACCGTTATGCTAGAT+TGG + Chr6:6107309-6107328 MsG0680030615.01.T01:CDS 35.0%
TGAACTTTCATGCACTTTGA+AGG + Chr6:6109030-6109049 MsG0680030615.01.T01:intron 35.0%
TGATTGGATAGATCATTTGG+AGG + Chr6:6105666-6105685 MsG0680030615.01.T01:CDS 35.0%
TGGAAGAAACGATGATTAGA+GGG + Chr6:6109570-6109589 MsG0680030615.01.T01:three_prime_UTR 35.0%
TGGAAGAAATATTCTTCCTG+TGG + Chr6:6105305-6105324 MsG0680030615.01.T01:CDS 35.0%
TGGATAGTTTCCAAGTGTTA+GGG - Chr6:6108271-6108290 None:intergenic 35.0%
TGGTTCGTGGATATAAATTG+TGG - Chr6:6106419-6106438 None:intergenic 35.0%
TTCAAGTGCTTTCTCTGTTT+GGG + Chr6:6109199-6109218 MsG0680030615.01.T01:CDS 35.0%
TTCCAGCACTTTCATTGAAA+GGG - Chr6:6105269-6105288 None:intergenic 35.0%
TTGGCATACTCTTTGATTAG+TGG - Chr6:6107982-6108001 None:intergenic 35.0%
TTTCACAAGCAACTTCAATG+AGG + Chr6:6109073-6109092 MsG0680030615.01.T01:CDS 35.0%
TTTCCATCAGCAGTTCTATA+TGG - Chr6:6105237-6105256 None:intergenic 35.0%
! ACTAGGTTTCTGAGAAATGA+TGG - Chr6:6108291-6108310 None:intergenic 35.0%
! ATTGGATTGTCTTTGTTTGG+GGG - Chr6:6109230-6109249 None:intergenic 35.0%
! CCCAATCACAATTTCTAAGA+TGG + Chr6:6106332-6106351 MsG0680030615.01.T01:intron 35.0%
! CTCCATCTTCATTTTGGATA+AGG - Chr6:6106838-6106857 None:intergenic 35.0%
! GATCCATCTAATTTTCCGAT+AGG + Chr6:6106236-6106255 MsG0680030615.01.T01:intron 35.0%
! TTGCTACTCCATCTTCATTT+TGG - Chr6:6106844-6106863 None:intergenic 35.0%
!! ATCTGGTTCTCATGAGAAAT+GGG + Chr6:6107088-6107107 MsG0680030615.01.T01:intron 35.0%
!!! AAGAAGTTTTGAACAGTGTG+AGG + Chr6:6106771-6106790 MsG0680030615.01.T01:CDS 35.0%
AAGATCTGATCATGTGGACA+TGG + Chr6:6108335-6108354 MsG0680030615.01.T01:CDS 40.0%
AATGATCTGATTGGACTACC+AGG + Chr6:6108177-6108196 MsG0680030615.01.T01:CDS 40.0%
ACAAACAGCTGTAGGAGTTA+GGG + Chr6:6105194-6105213 MsG0680030615.01.T01:CDS 40.0%
ACAACGGTCTCAATGAGATT+TGG + Chr6:6106117-6106136 MsG0680030615.01.T01:intron 40.0%
ACACCAAAAAGGGTTTGGAA+TGG + Chr6:6109102-6109121 MsG0680030615.01.T01:CDS 40.0%
AGAAACGATGATTAGAGGGT+TGG + Chr6:6109574-6109593 MsG0680030615.01.T01:three_prime_UTR 40.0%
AGATCTTCATCTTCCAAGTC+CGG - Chr6:6107292-6107311 None:intergenic 40.0%
AGTGTGAGGACATTCAAAGA+TGG + Chr6:6106785-6106804 MsG0680030615.01.T01:CDS 40.0%
ATAAGGTGGAACCTTGAACA+AGG - Chr6:6109620-6109639 None:intergenic 40.0%
ATCCAGGAATGACAGAAAAG+TGG + Chr6:6109168-6109187 MsG0680030615.01.T01:CDS 40.0%
ATTCACTCCATTGACAAGCT+TGG + Chr6:6105081-6105100 MsG0680030615.01.T01:CDS 40.0%
ATTCTTACCACCAAGGTGTA+CGG - Chr6:6105999-6106018 None:intergenic 40.0%
CAATACAACCTCTTCAACGT+TGG + Chr6:6105171-6105190 MsG0680030615.01.T01:CDS 40.0%
CACAAAGGAAGAAGATAAGG+TGG - Chr6:6109634-6109653 None:intergenic 40.0%
CACAGAAAGATCTGATCATG+TGG + Chr6:6108329-6108348 MsG0680030615.01.T01:CDS 40.0%
CAGGTGATGTTCGTAATAGT+TGG + Chr6:6106867-6106886 MsG0680030615.01.T01:CDS 40.0%
CAGTTTATAGGGATAGAGAG+AGG + Chr6:6108470-6108489 MsG0680030615.01.T01:intron 40.0%
CATCTATGTTCTGTGGTACT+AGG - Chr6:6108308-6108327 None:intergenic 40.0%
CATGGCAGAGAAGAAGATAA+AGG + Chr6:6108642-6108661 MsG0680030615.01.T01:CDS 40.0%
CCATATTCCAAGCTTGTCAA+TGG - Chr6:6105091-6105110 None:intergenic 40.0%
CCATTGACAAGCTTGGAATA+TGG + Chr6:6105088-6105107 MsG0680030615.01.T01:CDS 40.0%
CGTTGAAGAGGTTGTATTGT+TGG - Chr6:6105170-6105189 None:intergenic 40.0%
CTAGTACCACAGAACATAGA+TGG + Chr6:6108306-6108325 MsG0680030615.01.T01:CDS 40.0%
CTGGAAGAAACGATGATTAG+AGG + Chr6:6109569-6109588 MsG0680030615.01.T01:three_prime_UTR 40.0%
CTTCAAGTGCTTTCTCTGTT+TGG + Chr6:6109198-6109217 MsG0680030615.01.T01:CDS 40.0%
CTTCCAGCACTTTCATTGAA+AGG - Chr6:6105270-6105289 None:intergenic 40.0%
GAAAAAACCTTGTCCTCGAT+AGG + Chr6:6108201-6108220 MsG0680030615.01.T01:CDS 40.0%
GAACACAACTGAGAGCTTAA+AGG + Chr6:6109127-6109146 MsG0680030615.01.T01:CDS 40.0%
GAAGATGGAGTAGCAATTTC+AGG + Chr6:6106848-6106867 MsG0680030615.01.T01:CDS 40.0%
GACATACACCAAAAAGGGTT+TGG + Chr6:6109097-6109116 MsG0680030615.01.T01:CDS 40.0%
GAGGAGACATACACCAAAAA+GGG + Chr6:6109092-6109111 MsG0680030615.01.T01:CDS 40.0%
GCATACTCTTTGATTAGTGG+TGG - Chr6:6107979-6107998 None:intergenic 40.0%
GGTATATGGGAATGATGTTG+AGG + Chr6:6108597-6108616 MsG0680030615.01.T01:CDS 40.0%
GGTTTCTATGAGATCAAGAC+TGG + Chr6:6105961-6105980 MsG0680030615.01.T01:CDS 40.0%
GTGTGAGGACATTCAAAGAT+GGG + Chr6:6106786-6106805 MsG0680030615.01.T01:CDS 40.0%
GTGTGTTAAGAGTTCCACAT+CGG + Chr6:6106465-6106484 MsG0680030615.01.T01:intron 40.0%
TATTCCTTGTCATGGCATCT+AGG + Chr6:6108695-6108714 MsG0680030615.01.T01:CDS 40.0%
TATTCTTCCTGTGGATCAGA+AGG + Chr6:6105314-6105333 MsG0680030615.01.T01:CDS 40.0%
TCAAATGCAGAGAATCAGGT+AGG - Chr6:6107921-6107940 None:intergenic 40.0%
TCACACTATAGATTGGACTG+TGG + Chr6:6107357-6107376 MsG0680030615.01.T01:CDS 40.0%
TCATTTGGAGGACACTAATC+AGG + Chr6:6105678-6105697 MsG0680030615.01.T01:CDS 40.0%
TCGTGGATATAAATTGTGGG+TGG - Chr6:6106415-6106434 None:intergenic 40.0%
TCTATGGGTCATCAAACTTC+TGG + Chr6:6108243-6108262 MsG0680030615.01.T01:CDS 40.0%
TCTCTCAAATGCAGAGAATC+AGG - Chr6:6107925-6107944 None:intergenic 40.0%
TCTCTTGGGCCTATTGTATT+TGG + Chr6:6105125-6105144 MsG0680030615.01.T01:CDS 40.0%
TGAGGAGACATACACCAAAA+AGG + Chr6:6109091-6109110 MsG0680030615.01.T01:CDS 40.0%
TGATACACTAGTAGGTCTCA+TGG + Chr6:6108624-6108643 MsG0680030615.01.T01:CDS 40.0%
TGTTATCAGGTTTCCGCTAT+CGG + Chr6:6106388-6106407 MsG0680030615.01.T01:intron 40.0%
TTAAGAGTTCCACATCGGAT+AGG + Chr6:6106470-6106489 MsG0680030615.01.T01:intron 40.0%
TTAGAAAGAATACCCGGACT+TGG + Chr6:6107276-6107295 MsG0680030615.01.T01:intron 40.0%
TTGATCTCATAGAAACCCGT+TGG - Chr6:6105958-6105977 None:intergenic 40.0%
TTTACCTAGATGCCATGACA+AGG - Chr6:6108702-6108721 None:intergenic 40.0%
! ACTTTCATGCACTTTGAAGG+AGG + Chr6:6109033-6109052 MsG0680030615.01.T01:intron 40.0%
! ACTTTTCTGTCATTCCTGGA+TGG - Chr6:6109169-6109188 None:intergenic 40.0%
! AGGGATGGAAGTGTGATATA+TGG + Chr6:6106740-6106759 MsG0680030615.01.T01:intron 40.0%
! CACCAAAAAGGGTTTGGAAT+GGG + Chr6:6109103-6109122 MsG0680030615.01.T01:CDS 40.0%
! GGTTGTATTGTTGGTGAAGA+TGG - Chr6:6105161-6105180 None:intergenic 40.0%
! TGCTGTTTGTGATACTCTCA+AGG + Chr6:6106934-6106953 MsG0680030615.01.T01:CDS 40.0%
! TTCTCATGAGAAATGGGTTC+CGG + Chr6:6107094-6107113 MsG0680030615.01.T01:intron 40.0%
!! AACCACTTTTCTGTCATTCC+TGG - Chr6:6109173-6109192 None:intergenic 40.0%
!! AATGAAAGTGCTGGAAGTCA+AGG + Chr6:6105273-6105292 MsG0680030615.01.T01:CDS 40.0%
!! ATGAAAGTGCTGGAAGTCAA+GGG + Chr6:6105274-6105293 MsG0680030615.01.T01:CDS 40.0%
!! CGAGCAAAGTGTCAGTTTTA+AGG - Chr6:6107387-6107406 None:intergenic 40.0%
!! GATCTGGTTCTCATGAGAAA+TGG + Chr6:6107087-6107106 MsG0680030615.01.T01:intron 40.0%
!! GCAAGAGCATTAGTGTCTAT+GGG + Chr6:6108228-6108247 MsG0680030615.01.T01:CDS 40.0%
!! TGCAAGAGCATTAGTGTCTA+TGG + Chr6:6108227-6108246 MsG0680030615.01.T01:CDS 40.0%
!!! GTGGAGATTTGTTTTGTCCT+GGG - Chr6:6107960-6107979 None:intergenic 40.0%
!!! TGGAGATTTGTTTTGTCCTG+GGG - Chr6:6107959-6107978 None:intergenic 40.0%
AAAACTGACACTTTGCTCGC+AGG + Chr6:6107388-6107407 MsG0680030615.01.T01:CDS 45.0%
AACGTTGGACAAACAGCTGT+AGG + Chr6:6105186-6105205 MsG0680030615.01.T01:CDS 45.0%
AGATTAGGCCACCTGTTATC+AGG + Chr6:6106375-6106394 MsG0680030615.01.T01:intron 45.0%
ATCAGAGCCTCTCCAAGATT+AGG + Chr6:6106360-6106379 MsG0680030615.01.T01:intron 45.0%
ATGCAAACATCCGTACACCT+TGG + Chr6:6105986-6106005 MsG0680030615.01.T01:CDS 45.0%
CACCGTTTACCTGTTCTCTT+GGG + Chr6:6105111-6105130 MsG0680030615.01.T01:CDS 45.0%
CTAACACAACCCCACAAAGT+CGG - Chr6:6106311-6106330 None:intergenic 45.0%
CTGTTTGTCCAACGTTGAAG+AGG - Chr6:6105182-6105201 None:intergenic 45.0%
CTTATCTCTCAGTCAGACTC+CGG - Chr6:6107124-6107143 None:intergenic 45.0%
CTTCACAATCCGACTTTGTG+GGG + Chr6:6106299-6106318 MsG0680030615.01.T01:intron 45.0%
GACAAACAGCTGTAGGAGTT+AGG + Chr6:6105193-6105212 MsG0680030615.01.T01:CDS 45.0%
GAGGAGCTTGATACACTAGT+AGG + Chr6:6108616-6108635 MsG0680030615.01.T01:CDS 45.0%
GATAACAGGTGGCCTAATCT+TGG - Chr6:6106375-6106394 None:intergenic 45.0%
GATCTTCATCTTCCAAGTCC+GGG - Chr6:6107291-6107310 None:intergenic 45.0%
GATGTTCGTAATAGTTGGGC+TGG + Chr6:6106872-6106891 MsG0680030615.01.T01:CDS 45.0%
GCTTCACAATCCGACTTTGT+GGG + Chr6:6106298-6106317 MsG0680030615.01.T01:intron 45.0%
GGAAGTCAAGGGTCTTTCAT+TGG + Chr6:6105285-6105304 MsG0680030615.01.T01:CDS 45.0%
GGTCAAGAATTGTTCCACTC+AGG + Chr6:6107152-6107171 MsG0680030615.01.T01:intron 45.0%
GTTATCAGGTTTCCGCTATC+GGG + Chr6:6106389-6106408 MsG0680030615.01.T01:intron 45.0%
TACAATAGGCCCAAGAGAAC+AGG - Chr6:6105123-6105142 None:intergenic 45.0%
TCAATGTGTTAGCAGCTGCT+TGG + Chr6:6105626-6105645 MsG0680030615.01.T01:CDS 45.0%
TCCACATCGGATAGGTGATA+TGG + Chr6:6106478-6106497 MsG0680030615.01.T01:intron 45.0%
TCTGTGCCATCTATGTTCTG+TGG - Chr6:6108315-6108334 None:intergenic 45.0%
TGAGTCTCGTTAAATCGGTG+TGG + Chr6:6109357-6109376 MsG0680030615.01.T01:three_prime_UTR 45.0%
TGCAAATCCTATCGAGGACA+AGG - Chr6:6108211-6108230 None:intergenic 45.0%
TGCTCTTGCAAATCCTATCG+AGG - Chr6:6108217-6108236 None:intergenic 45.0%
TTGCATCCTCTCCTTGTTCA+AGG + Chr6:6109606-6109625 MsG0680030615.01.T01:three_prime_UTR 45.0%
TTGGTGAAGATGGCGTCTAA+TGG - Chr6:6105151-6105170 None:intergenic 45.0%
! AGAAATGGGTTCCGGTAATC+CGG + Chr6:6107102-6107121 MsG0680030615.01.T01:intron 45.0%
! CACCCATTCCAAACCCTTTT+TGG - Chr6:6109108-6109127 None:intergenic 45.0%
! GACCCTTTCAATGAAAGTGC+TGG + Chr6:6105264-6105283 MsG0680030615.01.T01:CDS 45.0%
! GGTGGTAGCCACAAAACTTT+TGG + Chr6:6105570-6105589 MsG0680030615.01.T01:CDS 45.0%
! GTTTTGTGGCTACCACCATA+GGG - Chr6:6105567-6105586 None:intergenic 45.0%
! TGACGCTATCTTTGGTGGAT+TGG + Chr6:6107813-6107832 MsG0680030615.01.T01:CDS 45.0%
!! AGTTTTGTGGCTACCACCAT+AGG - Chr6:6105568-6105587 None:intergenic 45.0%
!! GATAGCGGAAACCTGATAAC+AGG - Chr6:6106389-6106408 None:intergenic 45.0%
!! GCTATCTTTGGTGGATTGGT+GGG + Chr6:6107817-6107836 MsG0680030615.01.T01:CDS 45.0%
!!! AGATTTGTTTTGTCCTGGGG+TGG - Chr6:6107956-6107975 None:intergenic 45.0%
!!! GAGGACAAGGTTTTTTCTCC+TGG - Chr6:6108198-6108217 None:intergenic 45.0%
!!! GGTGGAGATTTGTTTTGTCC+TGG - Chr6:6107961-6107980 None:intergenic 45.0%
AAGGACACGTTTGGGCATGT+CGG + Chr6:6107790-6107809 MsG0680030615.01.T01:CDS 50.0%
ACCTTGTCCTTCTGATCCAC+AGG - Chr6:6105324-6105343 None:intergenic 50.0%
ACGACCAGCACTATTAGGCT+TGG - Chr6:6106439-6106458 None:intergenic 50.0%
ACTTCTGGTGCCCTAACACT+TGG + Chr6:6108258-6108277 MsG0680030615.01.T01:CDS 50.0%
AGAGATATATCTGCCACCCC+AGG + Chr6:6107940-6107959 MsG0680030615.01.T01:CDS 50.0%
AGCGGAAACCTGATAACAGG+TGG - Chr6:6106386-6106405 None:intergenic 50.0%
CAAACATCCGTACACCTTGG+TGG + Chr6:6105989-6106008 MsG0680030615.01.T01:CDS 50.0%
CAAAGTCGGATTGTGAAGCG+AGG - Chr6:6106297-6106316 None:intergenic 50.0%
CATGTCGGTGACGCTATCTT+TGG + Chr6:6107805-6107824 MsG0680030615.01.T01:CDS 50.0%
CGAACCAAGCCTAATAGTGC+TGG + Chr6:6106432-6106451 MsG0680030615.01.T01:intron 50.0%
CGACTTTGTGGGGTTGTGTT+AGG + Chr6:6106309-6106328 MsG0680030615.01.T01:intron 50.0%
CGCTTCACAATCCGACTTTG+TGG + Chr6:6106297-6106316 MsG0680030615.01.T01:intron 50.0%
GCACCGTTTACCTGTTCTCT+TGG + Chr6:6105110-6105129 MsG0680030615.01.T01:CDS 50.0%
GCCATATCACCTATCCGATG+TGG - Chr6:6106482-6106501 None:intergenic 50.0%
GGCCCAAGAGAACAGGTAAA+CGG - Chr6:6105116-6105135 None:intergenic 50.0%
GTGATTGATCGTCACCATCC+AGG + Chr6:6109152-6109171 MsG0680030615.01.T01:CDS 50.0%
GTGGAACCTTGAACAAGGAG+AGG - Chr6:6109615-6109634 None:intergenic 50.0%
GTTGTTGAAGCCAGACCCTA+TGG + Chr6:6105549-6105568 MsG0680030615.01.T01:intron 50.0%
TCAGTCAGACTCCGGATTAC+CGG - Chr6:6107116-6107135 None:intergenic 50.0%
TCCTGTGGATCAGAAGGACA+AGG + Chr6:6105320-6105339 MsG0680030615.01.T01:CDS 50.0%
TGAGTGTGTGGCAACTCATC+TGG + Chr6:6109550-6109569 MsG0680030615.01.T01:three_prime_UTR 50.0%
! GCACTATTAGGCTTGGTTCG+TGG - Chr6:6106432-6106451 None:intergenic 50.0%
! TGCACTTTGAAGGAGGCTAG+AGG + Chr6:6109040-6109059 MsG0680030615.01.T01:intron 50.0%
!! CATTGGCTTGCAACTTCACG+TGG - Chr6:6105895-6105914 None:intergenic 50.0%
!! CCTAATAGTGCTGGTCGTGA+GGG + Chr6:6106441-6106460 MsG0680030615.01.T01:intron 50.0%
!! CGCTATCTTTGGTGGATTGG+TGG + Chr6:6107816-6107835 MsG0680030615.01.T01:CDS 50.0%
!! CTAATAGTGCTGGTCGTGAG+GGG + Chr6:6106442-6106461 MsG0680030615.01.T01:intron 50.0%
!! TAATAGTGCTGGTCGTGAGG+GGG + Chr6:6106443-6106462 MsG0680030615.01.T01:intron 50.0%
AATTGTGGGTGGCCCGATAG+CGG - Chr6:6106404-6106423 None:intergenic 55.0%
CAGGTGGCCTAATCTTGGAG+AGG - Chr6:6106370-6106389 None:intergenic 55.0%
CCCTCACGACCAGCACTATT+AGG - Chr6:6106444-6106463 None:intergenic 55.0%
GAAGGAGGCTAGAGGCTGAT+AGG + Chr6:6109048-6109067 MsG0680030615.01.T01:intron 55.0%
GTCGGTGACGCTATCTTTGG+TGG + Chr6:6107808-6107827 MsG0680030615.01.T01:CDS 55.0%
GTTGAAGCCAGACCCTATGG+TGG + Chr6:6105552-6105571 MsG0680030615.01.T01:CDS 55.0%
TCGCAGGCATGCGTGGAAAT+TGG + Chr6:6107404-6107423 MsG0680030615.01.T01:CDS 55.0%
!! GCCTAATAGTGCTGGTCGTG+AGG + Chr6:6106440-6106459 MsG0680030615.01.T01:intron 55.0%
ACTTTGCTCGCAGGCATGCG+TGG + Chr6:6107397-6107416 MsG0680030615.01.T01:CDS 60.0%
GTGGCTACCACCATAGGGTC+TGG - Chr6:6105562-6105581 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 6104845 6109758 6104845 ID=MsG0680030615.01;Name=MsG0680030615.01
Chr6 mRNA 6104845 6109758 6104845 ID=MsG0680030615.01.T01;Parent=MsG0680030615.01;Name=MsG0680030615.01.T01;_AED=0.32;_eAED=0.34;_QI=0|0.88|0.9|1|1|1|10|481|629
Chr6 exon 6104845 6104925 6104845 ID=MsG0680030615.01.T01:exon:6005;Parent=MsG0680030615.01.T01
Chr6 exon 6105078 6105341 6105078 ID=MsG0680030615.01.T01:exon:6006;Parent=MsG0680030615.01.T01
Chr6 exon 6105550 6105699 6105550 ID=MsG0680030615.01.T01:exon:6007;Parent=MsG0680030615.01.T01
Chr6 exon 6105877 6106010 6105877 ID=MsG0680030615.01.T01:exon:6008;Parent=MsG0680030615.01.T01
Chr6 exon 6106742 6106955 6106742 ID=MsG0680030615.01.T01:exon:6009;Parent=MsG0680030615.01.T01
Chr6 exon 6107280 6107425 6107280 ID=MsG0680030615.01.T01:exon:6010;Parent=MsG0680030615.01.T01
Chr6 exon 6107765 6107992 6107765 ID=MsG0680030615.01.T01:exon:6011;Parent=MsG0680030615.01.T01
Chr6 exon 6108167 6108369 6108167 ID=MsG0680030615.01.T01:exon:6012;Parent=MsG0680030615.01.T01
Chr6 exon 6108473 6108716 6108473 ID=MsG0680030615.01.T01:exon:6013;Parent=MsG0680030615.01.T01
Chr6 exon 6109052 6109758 6109052 ID=MsG0680030615.01.T01:exon:6014;Parent=MsG0680030615.01.T01
Chr6 CDS 6104845 6104925 6104845 ID=MsG0680030615.01.T01:cds;Parent=MsG0680030615.01.T01
Chr6 CDS 6105078 6105341 6105078 ID=MsG0680030615.01.T01:cds;Parent=MsG0680030615.01.T01
Chr6 CDS 6105550 6105699 6105550 ID=MsG0680030615.01.T01:cds;Parent=MsG0680030615.01.T01
Chr6 CDS 6105877 6106010 6105877 ID=MsG0680030615.01.T01:cds;Parent=MsG0680030615.01.T01
Chr6 CDS 6106742 6106955 6106742 ID=MsG0680030615.01.T01:cds;Parent=MsG0680030615.01.T01
Chr6 CDS 6107280 6107425 6107280 ID=MsG0680030615.01.T01:cds;Parent=MsG0680030615.01.T01
Chr6 CDS 6107765 6107992 6107765 ID=MsG0680030615.01.T01:cds;Parent=MsG0680030615.01.T01
Chr6 CDS 6108167 6108369 6108167 ID=MsG0680030615.01.T01:cds;Parent=MsG0680030615.01.T01
Chr6 CDS 6108473 6108716 6108473 ID=MsG0680030615.01.T01:cds;Parent=MsG0680030615.01.T01
Chr6 CDS 6109052 6109277 6109052 ID=MsG0680030615.01.T01:cds;Parent=MsG0680030615.01.T01
Chr6 three_prime_UTR 6109278 6109758 6109278 ID=MsG0680030615.01.T01:three_prime_utr;Parent=MsG0680030615.01.T01
Gene Sequence

>MsG0680030615.01.T01

ATGTCATCAAGATATGAATATGTTTATCTTCATTCTGCGGTCAAGACTCAAGATTATGTTTTTTTAAACCTTGCTACATGTATTATTCACTCCATTGACAAGCTTGGAATATGGCACCGTTTACCTGTTCTCTTGGGCCTATTGTATTTGGCCATTAGACGCCATCTTCACCAACAATACAACCTCTTCAACGTTGGACAAACAGCTGTAGGAGTTAGGGCTAACCCTAATGATTATCCATATAGAACTGCTGATGGAAAATATAATGACCCTTTCAATGAAAGTGCTGGAAGTCAAGGGTCTTTCATTGGAAGAAATATTCTTCCTGTGGATCAGAAGGACAAGTTGTTGAAGCCAGACCCTATGGTGGTAGCCACAAAACTTTTGGAGAGAAAAACATTTCAGGACAATGGGAAACAATTCAATGTGTTAGCAGCTGCTTGGATTCAATTTATGATACATGATTGGATAGATCATTTGGAGGACACTAATCAGATTGAACTCACTGCACCACGTGAAGTTGCAAGCCAATGTCCACTAAAATCATTCAAGTTCTTGAAGACAAAGGAAATTCCAACGGGTTTCTATGAGATCAAGACTGGACATGCAAACATCCGTACACCTTGGTGGGATGGAAGTGTGATATATGGAAGCAATCAAGAAGTTTTGAACAGTGTGAGGACATTCAAAGATGGGAAGTTAAAAATATCAGAGGATGGTACCCTTATCCAAAATGAAGATGGAGTAGCAATTTCAGGTGATGTTCGTAATAGTTGGGCTGGTGTCTCAACTTTGCAAGCCCTTTTTATTCAAGAACACAATGCTGTTTGTGATACTCTCAAGAAAGAATACCCGGACTTGGAAGATGAAGATCTTTACCGTTATGCTAGATTGGTGACTTCAGCTGTGATTGCAAAGATTCACACTATAGATTGGACTGTGGAGCTCCTTAAAACTGACACTTTGCTCGCAGGCATGCGTGGAAATTGGTATGGATTATTGGGGAAGAAATTCAAGGACACGTTTGGGCATGTCGGTGACGCTATCTTTGGTGGATTGGTGGGCATGAATAAACCAGATAATCATGGTGTTCCATACTCTCTAACTGAAGAATTTGTCAGTGTCTATAGGATGCATGCACTCCTACCTGATTCTCTGCATTTGAGAGATATATCTGCCACCCCAGGACAAAACAAATCTCCACCACTAATCAAAGAGATTCCTATGAATGATCTGATTGGACTACCAGGAGAAAAAACCTTGTCCTCGATAGGATTTGCAAGAGCATTAGTGTCTATGGGTCATCAAACTTCTGGTGCCCTAACACTTGGAAACTATCCATCATTTCTCAGAAACCTAGTACCACAGAACATAGATGGCACAGAAAGATCTGATCATGTGGACATGGCTGCTCTTGAAATTTATAGGGATAGAGAGAGGAAAGTAGCCAGATATAATCAATTTAGAAGAGCATTACTATTGATACCTATTTCAAAATGGGAAGATTTGACAGATGATAAGAAAGTAATCAAAGTATTGGAAGAGGTATATGGGAATGATGTTGAGGAGCTTGATACACTAGTAGGTCTCATGGCAGAGAAGAAGATAAAGGGTTTTGCAATTAGTGAGACATCTTTTGTAATATTCCTTGTCATGGCATCTAGGAGGCTAGAGGCTGATAGGTTTTTCACAAGCAACTTCAATGAGGAGACATACACCAAAAAGGGTTTGGAATGGGTGAACACAACTGAGAGCTTAAAGGAAGTGATTGATCGTCACCATCCAGGAATGACAGAAAAGTGGTTGAATGCTTCAAGTGCTTTCTCTGTTTGGGATGCACCCCCAAACAAAGACAATCCAATTCCACTTTATCTTCGTATTCCTAGTTAA
Protein sequence

>MsG0680030615.01.T01

MSSRYEYVYLHSAVKTQDYVFLNLATCIIHSIDKLGIWHRLPVLLGLLYLAIRRHLHQQYNLFNVGQTAVGVRANPNDYPYRTADGKYNDPFNESAGSQGSFIGRNILPVDQKDKLLKPDPMVVATKLLERKTFQDNGKQFNVLAAAWIQFMIHDWIDHLEDTNQIELTAPREVASQCPLKSFKFLKTKEIPTGFYEIKTGHANIRTPWWDGSVIYGSNQEVLNSVRTFKDGKLKISEDGTLIQNEDGVAISGDVRNSWAGVSTLQALFIQEHNAVCDTLKKEYPDLEDEDLYRYARLVTSAVIAKIHTIDWTVELLKTDTLLAGMRGNWYGLLGKKFKDTFGHVGDAIFGGLVGMNKPDNHGVPYSLTEEFVSVYRMHALLPDSLHLRDISATPGQNKSPPLIKEIPMNDLIGLPGEKTLSSIGFARALVSMGHQTSGALTLGNYPSFLRNLVPQNIDGTERSDHVDMAALEIYRDRERKVARYNQFRRALLLIPISKWEDLTDDKKVIKVLEEVYGNDVEELDTLVGLMAEKKIKGFAISETSFVIFLVMASRRLEADRFFTSNFNEETYTKKGLEWVNTTESLKEVIDRHHPGMTEKWLNASSAFSVWDAPPNKDNPIPLYLRIPS*