AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040374.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040374.01.T01 MTR_7g090780 80.845 355 27 4 1 355 1 314 2.05e-172 482
MsG0780040374.01.T01 MTR_7g090780 92.969 256 13 2 100 355 1 251 3.51e-143 405
MsG0780040374.01.T01 MTR_7g090830 71.080 287 71 3 69 355 15 289 3.82e-131 377
MsG0780040374.01.T01 MTR_7g090800 66.899 287 81 3 70 355 34 307 5.47e-128 369
MsG0780040374.01.T01 MTR_7g090860 76.400 250 57 1 68 317 33 280 3.29e-124 367
MsG0780040374.01.T01 MTR_7g090775 70.930 258 70 2 61 317 5 258 4.64e-121 350
MsG0780040374.01.T01 MTR_7g090820 69.014 284 59 4 69 352 29 283 7.73e-115 337
MsG0780040374.01.T01 MTR_1g051750 42.986 221 105 6 70 279 21 231 4.77e-51 170
MsG0780040374.01.T01 MTR_3g023510 43.119 109 62 0 70 178 34 142 1.60e-28 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040374.01.T01 AT5G03990 33.977 259 141 6 73 330 40 269 4.10e-33 125
MsG0780040374.01.T01 AT3G51940 51.087 92 44 1 74 164 33 124 3.60e-28 114
MsG0780040374.01.T01 AT3G51940 51.087 92 44 1 74 164 37 128 4.25e-28 114
MsG0780040374.01.T01 AT5G03990 31.034 232 130 6 100 330 1 203 9.44e-20 87.4

Find 106 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAATCAATTGGTAATTTA+AGG 0.112372 7:-76703365 None:intergenic
CCAAAGGTGGCTTTCTTTAT+AGG 0.144673 7:-76702038 None:intergenic
TGCATCCCAATGTGGTAAAT+TGG 0.166892 7:+76703511 MsG0780040374.01.T01:CDS
GAAATGGCGGTAATGGAAAT+TGG 0.216567 7:+76704042 MsG0780040374.01.T01:CDS
TTGATTCTATTTATTCCTTT+TGG 0.228657 7:+76703379 MsG0780040374.01.T01:CDS
TTATTACTGAAATGGATAAT+TGG 0.261329 7:+76701957 None:intergenic
TGTCGACCCCGAACTTTATC+TGG 0.292705 7:+76703665 MsG0780040374.01.T01:CDS
GGCGAGGCAGCCGTGATTCT+TGG 0.305461 7:+76703732 MsG0780040374.01.T01:CDS
GGAGGAGGAGGAAGAGGTGG+AGG 0.309961 7:+76704191 MsG0780040374.01.T01:CDS
GGAGGAGGAAGAGGTGGAGG+AGG 0.311785 7:+76704194 MsG0780040374.01.T01:CDS
GTTGAACCTTCAAAGGAATA+TGG 0.318838 7:+76703936 MsG0780040374.01.T01:CDS
GGTGGAGGAGGAGGAAGGAG+GGG 0.319614 7:+76704206 MsG0780040374.01.T01:CDS
AGGTGGAGGAGGAGGAAGGA+GGG 0.326176 7:+76704205 MsG0780040374.01.T01:CDS
CGCCGCAACATGGAAGAAAA+AGG 0.329418 7:+76703711 MsG0780040374.01.T01:CDS
GGAGGAAGAGGTGGAGGAGG+AGG 0.330303 7:+76704197 MsG0780040374.01.T01:CDS
CGCCAACCATATTCCTTTGA+AGG 0.340454 7:-76703942 None:intergenic
GGATGGGGACCTACTGGATG+GGG 0.344597 7:+76703792 MsG0780040374.01.T01:CDS
GGAGGAAGAGGAGGAGGAGG+AGG 0.345038 7:+76704179 MsG0780040374.01.T01:CDS
TCCATCCATGATAATCATTC+TGG 0.346408 7:-76703971 None:intergenic
GAGGTGGAGGAGGAGGAAGG+AGG 0.349043 7:+76704204 MsG0780040374.01.T01:CDS
CCTATAAAGAAAGCCACCTT+TGG 0.353054 7:+76702038 MsG0780040374.01.T01:CDS
AAATGGCGGTAATGGAAATT+GGG 0.360900 7:+76704043 MsG0780040374.01.T01:CDS
AGAAGAAGAAGCGGAGGAAG+AGG 0.362675 7:+76704167 MsG0780040374.01.T01:CDS
AGCGGAGGAAGAGGAGGAGG+AGG 0.362993 7:+76704176 MsG0780040374.01.T01:CDS
TTCCTTCTAGGTGTGATTAT+AGG 0.366071 7:+76703337 MsG0780040374.01.T01:intron
AGAATCAATTGGTAATTTAA+GGG 0.366209 7:-76703364 None:intergenic
GATGGGGACCTACTGGATGG+GGG 0.369719 7:+76703793 MsG0780040374.01.T01:CDS
TCCTTTGAAGGTTCAACAAC+AGG 0.379188 7:-76703930 None:intergenic
TTCCACATCCAGATAAAGTT+CGG 0.380635 7:-76703673 None:intergenic
TCCACATCCAGATAAAGTTC+GGG 0.382465 7:-76703672 None:intergenic
AAGGAATATGGTTGGCGAAA+TGG 0.391675 7:+76703948 MsG0780040374.01.T01:CDS
CTGGATGGGGACCTACTGGA+TGG 0.396986 7:+76703790 MsG0780040374.01.T01:CDS
GAAGAGGTGGAGGAGGAGGA+AGG 0.407371 7:+76704201 MsG0780040374.01.T01:CDS
CAAGGAAGAAATGGCGGTAA+TGG 0.409545 7:+76704035 MsG0780040374.01.T01:CDS
TGGATGGGGACCTACTGGAT+GGG 0.411862 7:+76703791 MsG0780040374.01.T01:CDS
TGAACAGAATTATGCTGCTC+AGG 0.411888 7:+76703848 MsG0780040374.01.T01:CDS
AGAAGCGGAGGAAGAGGAGG+AGG 0.414895 7:+76704173 MsG0780040374.01.T01:CDS
AACAAGTATCAAGGAAGAAA+TGG 0.421942 7:+76704026 MsG0780040374.01.T01:CDS
TCATCCCAATTTACCACATT+GGG 0.428459 7:-76703516 None:intergenic
AAAATAATGAAACAAACTCT+TGG 0.438543 7:+76703892 MsG0780040374.01.T01:CDS
TGGAATCAGACGGAGCAATA+TGG 0.440258 7:+76703990 MsG0780040374.01.T01:CDS
GGTTTCCAACAGTGCCTTTG+TGG 0.441064 7:+76703415 MsG0780040374.01.T01:CDS
TCCCCATCCAGGACCGGAAA+AGG 0.450165 7:-76703778 None:intergenic
ATGGGGACCTACTGGATGGG+GGG 0.451326 7:+76703794 MsG0780040374.01.T01:CDS
CCATGGCGAAAGGTAATAGA+AGG 0.451419 7:+76703471 MsG0780040374.01.T01:CDS
GGTCCTGGATGGGGACCTAC+TGG 0.453239 7:+76703786 MsG0780040374.01.T01:CDS
CTCACATTGATGATGTAGAT+TGG 0.455451 7:+76703634 MsG0780040374.01.T01:CDS
TCATCATCAAGTGGGGTCAC+TGG 0.458116 7:+76702002 MsG0780040374.01.T01:CDS
ATTAGTGCCATGATGATGTC+CGG 0.466379 7:-76704123 None:intergenic
GATGATGATTACTGATCCCT+TGG 0.467657 7:-76701987 None:intergenic
AAGGAATAAATAGAATCAAT+TGG 0.469962 7:-76703375 None:intergenic
TCAATGTGAGTGTCGAGATC+AGG 0.474988 7:-76703621 None:intergenic
CTATAAAGAAAGCCACCTTT+GGG 0.475443 7:+76702039 MsG0780040374.01.T01:CDS
AAATAATGAAACAAACTCTT+GGG 0.477297 7:+76703893 MsG0780040374.01.T01:CDS
TCAACAACAGGAGCACGATA+TGG 0.478493 7:-76703918 None:intergenic
AGAAGAAGCGGAGGAAGAGG+AGG 0.489710 7:+76704170 MsG0780040374.01.T01:CDS
AATGAATATCAGATGAATAG+AGG 0.493050 7:+76704143 MsG0780040374.01.T01:CDS
AGAATTATGCTGCTCAGGGA+TGG 0.497386 7:+76703853 MsG0780040374.01.T01:CDS
GCATCCCAATGTGGTAAATT+GGG 0.497460 7:+76703512 MsG0780040374.01.T01:CDS
TCCTGTTGTTGAACCTTCAA+AGG 0.497931 7:+76703929 MsG0780040374.01.T01:CDS
CCTATTATCTGCGAACCAAA+AGG 0.500347 7:-76703394 None:intergenic
GTAATGGAAATTGGGGAGCA+TGG 0.502202 7:+76704051 MsG0780040374.01.T01:CDS
GTTTCCAACAGTGCCTTTGT+GGG 0.503784 7:+76703416 MsG0780040374.01.T01:CDS
GGAAATTGGGGAGCATGGGA+TGG 0.507278 7:+76704056 MsG0780040374.01.T01:CDS
ATCAGGCAATGGTATGTCGC+AGG 0.507842 7:-76703604 None:intergenic
TTAGTGCCATGATGATGTCC+GGG 0.507899 7:-76704122 None:intergenic
CATCCAGTAGGTCCCCATCC+AGG 0.508679 7:-76703789 None:intergenic
AGAGGAAGAAGAAGAAGCGG+AGG 0.514759 7:+76704161 MsG0780040374.01.T01:CDS
AATCGATTGGCTCAGTTCCA+TGG 0.520978 7:+76703454 MsG0780040374.01.T01:CDS
AGCAGAGGCCCGCCGCAACA+TGG 0.520992 7:+76703701 MsG0780040374.01.T01:CDS
GTCATCCCAATTTACCACAT+TGG 0.528139 7:-76703517 None:intergenic
TAATGGAAATTGGGGAGCAT+GGG 0.534866 7:+76704052 MsG0780040374.01.T01:CDS
CCCCGAACTTTATCTGGATG+TGG 0.535767 7:+76703671 MsG0780040374.01.T01:CDS
GTGGAAAAGGTAGCTACTCC+TGG 0.538528 7:+76704242 MsG0780040374.01.T01:CDS
CCTTCTATTACCTTTCGCCA+TGG 0.539041 7:-76703471 None:intergenic
ATCTTCATTTACCATGCACC+AGG 0.539123 7:-76704260 None:intergenic
TAAGCCTCTTCTCACAAAAG+AGG 0.541728 7:-76702426 None:intergenic
GAATTATGCTGCTCAGGGAT+GGG 0.543052 7:+76703854 MsG0780040374.01.T01:CDS
GCCAGAATGATTATCATGGA+TGG 0.543243 7:+76703970 MsG0780040374.01.T01:CDS
GACTTGCATAACAAGTATCA+AGG 0.550052 7:+76704017 MsG0780040374.01.T01:CDS
AATAGAGGAAGAAGAAGAAG+CGG 0.550756 7:+76704158 MsG0780040374.01.T01:CDS
ATCAGTAATCATCATCAAGT+GGG 0.555152 7:+76701994 MsG0780040374.01.T01:CDS
AACCTTCAAAGGAATATGGT+TGG 0.557337 7:+76703940 MsG0780040374.01.T01:CDS
AATGGCCAGAATGATTATCA+TGG 0.560785 7:+76703966 MsG0780040374.01.T01:CDS
AGTAGGTCCCCATCCAGGAC+CGG 0.560984 7:-76703784 None:intergenic
AATAACCCCGGACATCATCA+TGG 0.580939 7:+76704116 MsG0780040374.01.T01:CDS
GAACAGAATTATGCTGCTCA+GGG 0.595487 7:+76703849 MsG0780040374.01.T01:CDS
GATCAGTAATCATCATCAAG+TGG 0.615022 7:+76701993 MsG0780040374.01.T01:CDS
AGGTAGCTACTCCTGGTGCA+TGG 0.624734 7:+76704249 MsG0780040374.01.T01:CDS
GGATGTGGAAAGAGAAGCAG+AGG 0.624882 7:+76703686 MsG0780040374.01.T01:CDS
GCTTTCTTTATAGGACGATG+AGG 0.626542 7:-76702029 None:intergenic
TCAGGCAATGGTATGTCGCA+GGG 0.628570 7:-76703603 None:intergenic
TGGCTCAGTTCCATGGCGAA+AGG 0.630820 7:+76703461 MsG0780040374.01.T01:CDS
GGATGACTCTGCTGTCAAAG+AGG 0.633767 7:+76703533 MsG0780040374.01.T01:CDS
AAGAGAACTACCAAGAATCA+CGG 0.642265 7:-76703742 None:intergenic
AATGGCGGTAATGGAAATTG+GGG 0.644690 7:+76704044 MsG0780040374.01.T01:CDS
AGAGAGAAAACAATATGTCG+TGG 0.652185 7:+76704090 MsG0780040374.01.T01:CDS
AAGTATCAAGGAAGAAATGG+CGG 0.663489 7:+76704029 MsG0780040374.01.T01:CDS
ATGTCGTGGTCTAATAACCC+CGG 0.670337 7:+76704104 MsG0780040374.01.T01:CDS
CCACATCCAGATAAAGTTCG+GGG 0.678042 7:-76703671 None:intergenic
GAATGGTACTAACCCAAAGG+TGG 0.681196 7:-76702051 None:intergenic
TTATCATGGATGGAATCAGA+CGG 0.682338 7:+76703980 MsG0780040374.01.T01:CDS
TGAGTGTCGAGATCAGGCAA+TGG 0.693994 7:-76703615 None:intergenic
TAGTGCCATGATGATGTCCG+GGG 0.697507 7:-76704121 None:intergenic
TCAGTAATCATCATCAAGTG+GGG 0.699017 7:+76701995 MsG0780040374.01.T01:CDS
TATGTATCTGCATCCCAATG+TGG 0.712444 7:+76703503 MsG0780040374.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAACACTTATTTATTGAA+TGG - Chr7:76703274-76703293 None:intergenic 15.0%
!! ATTTAATTATAGAAATGTAC+AGG + Chr7:76702697-76702716 MsG0780040374.01.T01:intron 15.0%
!! TAACAAATAAAACTAAAGAA+AGG - Chr7:76702104-76702123 None:intergenic 15.0%
!! TTTAATTATAGAAATGTACA+GGG + Chr7:76702698-76702717 MsG0780040374.01.T01:intron 15.0%
!!! TATCTACTAATTAAATCTTT+TGG + Chr7:76703151-76703170 MsG0780040374.01.T01:intron 15.0%
!! AAAATAATGAAACAAACTCT+TGG + Chr7:76703892-76703911 MsG0780040374.01.T01:CDS 20.0%
!! AAATAATGAAACAAACTCTT+GGG + Chr7:76703893-76703912 MsG0780040374.01.T01:CDS 20.0%
!! AAATTTAACCAAACTTGAAA+TGG - Chr7:76702962-76702981 None:intergenic 20.0%
!! AAGGAATAAATAGAATCAAT+TGG - Chr7:76703378-76703397 None:intergenic 20.0%
!! AATTGAACATATTCAAAAGT+AGG - Chr7:76702262-76702281 None:intergenic 20.0%
!! ATTGAACATATTCAAAAGTA+GGG - Chr7:76702261-76702280 None:intergenic 20.0%
!! CAAGATATTCAATAATTGAA+GGG + Chr7:76702562-76702581 MsG0780040374.01.T01:intron 20.0%
!! TGAAATGTTGTAAAATATGA+TGG + Chr7:76702502-76702521 MsG0780040374.01.T01:intron 20.0%
!! TTCTATAATTAAATGACGTA+GGG - Chr7:76702691-76702710 None:intergenic 20.0%
!! TTTCTATAATTAAATGACGT+AGG - Chr7:76702692-76702711 None:intergenic 20.0%
!!! AAATTTTTCTTATGTGGAAA+AGG + Chr7:76704229-76704248 MsG0780040374.01.T01:CDS 20.0%
!!! ACTTTTGAATATGTTCAATT+GGG + Chr7:76702262-76702281 MsG0780040374.01.T01:intron 20.0%
!!! AGAATCAATTGGTAATTTAA+GGG - Chr7:76703367-76703386 None:intergenic 20.0%
!!! GATCAGTGATTTAAAATAAT+TGG + Chr7:76702163-76702182 MsG0780040374.01.T01:intron 20.0%
!!! TACTTTTGAATATGTTCAAT+TGG + Chr7:76702261-76702280 MsG0780040374.01.T01:intron 20.0%
!!! TAGAATCAATTGGTAATTTA+AGG - Chr7:76703368-76703387 None:intergenic 20.0%
!!! TTGATTCTATTTATTCCTTT+TGG + Chr7:76703379-76703398 MsG0780040374.01.T01:CDS 20.0%
!!! TTGTTTCATTATTTTCATGT+TGG - Chr7:76703887-76703906 None:intergenic 20.0%
! AATGAATATCAGATGAATAG+AGG + Chr7:76704143-76704162 MsG0780040374.01.T01:CDS 25.0%
! AATGTTGTAAAATATGATGG+AGG + Chr7:76702505-76702524 MsG0780040374.01.T01:intron 25.0%
! ACAAAAGATAGACTAAAGAA+AGG - Chr7:76702931-76702950 None:intergenic 25.0%
! ACAGGAAATTTAAGTATCTT+TGG - Chr7:76703089-76703108 None:intergenic 25.0%
! AGGTCATTCAATTATTGAAT+AGG + Chr7:76703202-76703221 MsG0780040374.01.T01:intron 25.0%
! CCAAGATATTCAATAATTGA+AGG + Chr7:76702561-76702580 MsG0780040374.01.T01:intron 25.0%
! CCTTCAATTATTGAATATCT+TGG - Chr7:76702564-76702583 None:intergenic 25.0%
! TTCAATAATTGAATGACCTA+AGG - Chr7:76703201-76703220 None:intergenic 25.0%
!! AAGAGTGTAGTTAAATAAAC+AGG - Chr7:76703107-76703126 None:intergenic 25.0%
!! ATGAATTGTTGTCATTTCTT+TGG + Chr7:76702600-76702619 MsG0780040374.01.T01:intron 25.0%
!! ATGTTGTAAAATATGATGGA+GGG + Chr7:76702506-76702525 MsG0780040374.01.T01:intron 25.0%
!! ATTTTTCTTAGGATGAGTTT+TGG + Chr7:76702376-76702395 MsG0780040374.01.T01:intron 25.0%
!! CTACTAATTAAATCTTTTGG+AGG + Chr7:76703154-76703173 MsG0780040374.01.T01:intron 25.0%
!! CTTTTGAATATGTTCAATTG+GGG + Chr7:76702263-76702282 MsG0780040374.01.T01:intron 25.0%
!!! AAATGAAACCATTTCAAGTT+TGG + Chr7:76702951-76702970 MsG0780040374.01.T01:intron 25.0%
!!! GGTTAAATTTGTTCTGAAAA+TGG + Chr7:76702972-76702991 MsG0780040374.01.T01:intron 25.0%
!!! TGGTTTTGAATGAACAATTT+TGG + Chr7:76702305-76702324 MsG0780040374.01.T01:intron 25.0%
!!! TTACTTTTCAAAGTATCCTT+AGG + Chr7:76703182-76703201 MsG0780040374.01.T01:intron 25.0%
AACAAGTATCAAGGAAGAAA+TGG + Chr7:76704026-76704045 MsG0780040374.01.T01:CDS 30.0%
AGGTTGTAATTTCTTCTTGT+TGG + Chr7:76702636-76702655 MsG0780040374.01.T01:intron 30.0%
ATCAGTAATCATCATCAAGT+GGG + Chr7:76701994-76702013 MsG0780040374.01.T01:CDS 30.0%
ATTAAATTGACGAAGCTTAC+AGG + Chr7:76702894-76702913 MsG0780040374.01.T01:intron 30.0%
CATTTGACAATGCAAAAAAC+AGG + Chr7:76703556-76703575 MsG0780040374.01.T01:CDS 30.0%
GATAATTGGAGAAAAACCAA+GGG + Chr7:76701971-76701990 MsG0780040374.01.T01:CDS 30.0%
GTCAATTTAATGATGAGGTA+GGG - Chr7:76702885-76702904 None:intergenic 30.0%
TCAATGATGACACACATTAT+CGG - Chr7:76703050-76703069 None:intergenic 30.0%
TTCGTGTATTGAAAATGTCT+AGG + Chr7:76703128-76703147 MsG0780040374.01.T01:intron 30.0%
! AACTATGTTTCTGTTTGTGT+TGG + Chr7:76702730-76702749 MsG0780040374.01.T01:intron 30.0%
! ACAATGCAAAAAACAGGTTT+TGG + Chr7:76703562-76703581 MsG0780040374.01.T01:CDS 30.0%
! CAATGCAAAAAACAGGTTTT+GGG + Chr7:76703563-76703582 MsG0780040374.01.T01:CDS 30.0%
! CTAGACAGATTTAGTTCAAA+AGG - Chr7:76703245-76703264 None:intergenic 30.0%
! TAAAATATGATGGAGGGTTT+AGG + Chr7:76702512-76702531 MsG0780040374.01.T01:intron 30.0%
!! AAGAAGTTTTGTGAATCGAT+TGG + Chr7:76703441-76703460 MsG0780040374.01.T01:CDS 30.0%
!! ATGTTCAAGTTGGTATCTAT+TGG + Chr7:76703009-76703028 MsG0780040374.01.T01:intron 30.0%
!! TCTGAAAATGGTCTTGATTT+TGG + Chr7:76702984-76703003 MsG0780040374.01.T01:intron 30.0%
AACCTATAATCACACCTAGA+AGG - Chr7:76703342-76703361 None:intergenic 35.0%
AACCTTCAAAGGAATATGGT+TGG + Chr7:76703940-76703959 MsG0780040374.01.T01:CDS 35.0%
AAGAGAACTACCAAGAATCA+CGG - Chr7:76703745-76703764 None:intergenic 35.0%
AAGTATCAAGGAAGAAATGG+CGG + Chr7:76704029-76704048 MsG0780040374.01.T01:CDS 35.0%
AATAGAGGAAGAAGAAGAAG+CGG + Chr7:76704158-76704177 MsG0780040374.01.T01:CDS 35.0%
AATATGTTCAATTGGGGTGT+TGG + Chr7:76702269-76702288 MsG0780040374.01.T01:intron 35.0%
AATGATGACACACATTATCG+GGG - Chr7:76703048-76703067 None:intergenic 35.0%
AATGGCCAGAATGATTATCA+TGG + Chr7:76703966-76703985 MsG0780040374.01.T01:CDS 35.0%
AATTGAAGGGAGTTTCACTA+AGG + Chr7:76702575-76702594 MsG0780040374.01.T01:intron 35.0%
AGAGAGAAAACAATATGTCG+TGG + Chr7:76704090-76704109 MsG0780040374.01.T01:CDS 35.0%
ATTCAACTGCAACTCAATTG+TGG - Chr7:76702211-76702230 None:intergenic 35.0%
CAATGATGACACACATTATC+GGG - Chr7:76703049-76703068 None:intergenic 35.0%
CAATGTGTCACATCAAGATT+CGG - Chr7:76702854-76702873 None:intergenic 35.0%
CGTCAATTTAATGATGAGGT+AGG - Chr7:76702886-76702905 None:intergenic 35.0%
CTATAAAGAAAGCCACCTTT+GGG + Chr7:76702039-76702058 MsG0780040374.01.T01:CDS 35.0%
GACTTGCATAACAAGTATCA+AGG + Chr7:76704017-76704036 MsG0780040374.01.T01:CDS 35.0%
GATCAGTAATCATCATCAAG+TGG + Chr7:76701993-76702012 MsG0780040374.01.T01:CDS 35.0%
GCTTCGTCAATTTAATGATG+AGG - Chr7:76702890-76702909 None:intergenic 35.0%
GGATAATTGGAGAAAAACCA+AGG + Chr7:76701970-76701989 MsG0780040374.01.T01:CDS 35.0%
GTTGAACCTTCAAAGGAATA+TGG + Chr7:76703936-76703955 MsG0780040374.01.T01:CDS 35.0%
TCAGTAATCATCATCAAGTG+GGG + Chr7:76701995-76702014 MsG0780040374.01.T01:CDS 35.0%
TCATCCCAATTTACCACATT+GGG - Chr7:76703519-76703538 None:intergenic 35.0%
TCCATCCATGATAATCATTC+TGG - Chr7:76703974-76703993 None:intergenic 35.0%
TTATCATGGATGGAATCAGA+CGG + Chr7:76703980-76703999 MsG0780040374.01.T01:CDS 35.0%
TTCCACATCCAGATAAAGTT+CGG - Chr7:76703676-76703695 None:intergenic 35.0%
TTCCTTCTAGGTGTGATTAT+AGG + Chr7:76703337-76703356 MsG0780040374.01.T01:intron 35.0%
! ATTGTTGTCATTTCTTTGGC+TGG + Chr7:76702604-76702623 MsG0780040374.01.T01:intron 35.0%
! CAAAACTTCTTTTCCCACAA+AGG - Chr7:76703432-76703451 None:intergenic 35.0%
! CTTTTGCATGTTTTCCTTCT+AGG + Chr7:76703325-76703344 MsG0780040374.01.T01:intron 35.0%
! GAGGGGAAATTTTTCTTATG+TGG + Chr7:76704223-76704242 MsG0780040374.01.T01:CDS 35.0%
!! AAATGGCGGTAATGGAAATT+GGG + Chr7:76704043-76704062 MsG0780040374.01.T01:CDS 35.0%
!! CTCACATTGATGATGTAGAT+TGG + Chr7:76703634-76703653 MsG0780040374.01.T01:CDS 35.0%
!! GATTTTGGCAATGTTCAAGT+TGG + Chr7:76702999-76703018 MsG0780040374.01.T01:intron 35.0%
!! GTGTTGGTTTAAAAATTGGC+TGG + Chr7:76702285-76702304 MsG0780040374.01.T01:intron 35.0%
!! TGGGGTGTTGGTTTAAAAAT+TGG + Chr7:76702281-76702300 MsG0780040374.01.T01:intron 35.0%
!!! CAATTTTGGTTTTGTGCTAG+TGG + Chr7:76702319-76702338 MsG0780040374.01.T01:intron 35.0%
!!! CTTGGTCATTTTTGTTGACA+AGG - Chr7:76702546-76702565 None:intergenic 35.0%
!!! TAGGATGAGTTTTGGTTTGA+TGG + Chr7:76702384-76702403 MsG0780040374.01.T01:intron 35.0%
AAGGAATATGGTTGGCGAAA+TGG + Chr7:76703948-76703967 MsG0780040374.01.T01:CDS 40.0%
AGAGAATGGTACTAACCCAA+AGG - Chr7:76702057-76702076 None:intergenic 40.0%
ATGATGACACACATTATCGG+GGG - Chr7:76703047-76703066 None:intergenic 40.0%
CCAAAGGTGGCTTTCTTTAT+AGG - Chr7:76702041-76702060 None:intergenic 40.0%
CCTATAAAGAAAGCCACCTT+TGG + Chr7:76702038-76702057 MsG0780040374.01.T01:CDS 40.0%
CCTATTATCTGCGAACCAAA+AGG - Chr7:76703397-76703416 None:intergenic 40.0%
GAACAGAATTATGCTGCTCA+GGG + Chr7:76703849-76703868 MsG0780040374.01.T01:CDS 40.0%
GATGATGATTACTGATCCCT+TGG - Chr7:76701990-76702009 None:intergenic 40.0%
GCATCCCAATGTGGTAAATT+GGG + Chr7:76703512-76703531 MsG0780040374.01.T01:CDS 40.0%
GCCAGAATGATTATCATGGA+TGG + Chr7:76703970-76703989 MsG0780040374.01.T01:CDS 40.0%
GCTTTCTTTATAGGACGATG+AGG - Chr7:76702032-76702051 None:intergenic 40.0%
GTCATCCCAATTTACCACAT+TGG - Chr7:76703520-76703539 None:intergenic 40.0%
TAAGCCTCTTCTCACAAAAG+AGG - Chr7:76702429-76702448 None:intergenic 40.0%
TATGTATCTGCATCCCAATG+TGG + Chr7:76703503-76703522 MsG0780040374.01.T01:CDS 40.0%
TCCACATCCAGATAAAGTTC+GGG - Chr7:76703675-76703694 None:intergenic 40.0%
TCCTGTTGTTGAACCTTCAA+AGG + Chr7:76703929-76703948 MsG0780040374.01.T01:CDS 40.0%
TGAACAGAATTATGCTGCTC+AGG + Chr7:76703848-76703867 MsG0780040374.01.T01:CDS 40.0%
TGCATCCCAATGTGGTAAAT+TGG + Chr7:76703511-76703530 MsG0780040374.01.T01:CDS 40.0%
! ATTAGTGCCATGATGATGTC+CGG - Chr7:76704126-76704145 None:intergenic 40.0%
! CTCTTGAATCAGTCCTTTTC+CGG + Chr7:76703765-76703784 MsG0780040374.01.T01:CDS 40.0%
! CTTTGATTTCATGTCGTCTG+TGG + Chr7:76702798-76702817 MsG0780040374.01.T01:intron 40.0%
! GTTTTGCATGATCATCAGGT+TGG + Chr7:76702660-76702679 MsG0780040374.01.T01:intron 40.0%
! TAATGGAAATTGGGGAGCAT+GGG + Chr7:76704052-76704071 MsG0780040374.01.T01:CDS 40.0%
! TCCTTTGAAGGTTCAACAAC+AGG - Chr7:76703933-76703952 None:intergenic 40.0%
! TGGTGTTTTGCATGATCATC+AGG + Chr7:76702656-76702675 MsG0780040374.01.T01:intron 40.0%
! TTGTCATTTCTTTGGCTGGT+GGG + Chr7:76702608-76702627 MsG0780040374.01.T01:intron 40.0%
!! AATGGCGGTAATGGAAATTG+GGG + Chr7:76704044-76704063 MsG0780040374.01.T01:CDS 40.0%
!! GAAATGGCGGTAATGGAAAT+TGG + Chr7:76704042-76704061 MsG0780040374.01.T01:CDS 40.0%
!!! CCTTTTGGTTCGCAGATAAT+AGG + Chr7:76703394-76703413 MsG0780040374.01.T01:CDS 40.0%
!!! TTTGGTTTTGTGCTAGTGGT+AGG + Chr7:76702323-76702342 MsG0780040374.01.T01:intron 40.0%
AATAACCCCGGACATCATCA+TGG + Chr7:76704116-76704135 MsG0780040374.01.T01:CDS 45.0%
AGAATTATGCTGCTCAGGGA+TGG + Chr7:76703853-76703872 MsG0780040374.01.T01:CDS 45.0%
AGAGAGAGAGAGAGAGAGAA+TGG - Chr7:76702071-76702090 None:intergenic 45.0%
ATGTCGTGGTCTAATAACCC+CGG + Chr7:76704104-76704123 MsG0780040374.01.T01:CDS 45.0%
CAACATGGAAGAAAAAGGCG+AGG + Chr7:76703716-76703735 MsG0780040374.01.T01:CDS 45.0%
CAAGGAAGAAATGGCGGTAA+TGG + Chr7:76704035-76704054 MsG0780040374.01.T01:CDS 45.0%
CCACATCCAGATAAAGTTCG+GGG - Chr7:76703674-76703693 None:intergenic 45.0%
CCATGGCGAAAGGTAATAGA+AGG + Chr7:76703471-76703490 MsG0780040374.01.T01:CDS 45.0%
CCTTCTATTACCTTTCGCCA+TGG - Chr7:76703474-76703493 None:intergenic 45.0%
CGCCAACCATATTCCTTTGA+AGG - Chr7:76703945-76703964 None:intergenic 45.0%
GAATGGTACTAACCCAAAGG+TGG - Chr7:76702054-76702073 None:intergenic 45.0%
GAATTATGCTGCTCAGGGAT+GGG + Chr7:76703854-76703873 MsG0780040374.01.T01:CDS 45.0%
GTTTCCAACAGTGCCTTTGT+GGG + Chr7:76703416-76703435 MsG0780040374.01.T01:CDS 45.0%
TGGAATCAGACGGAGCAATA+TGG + Chr7:76703990-76704009 MsG0780040374.01.T01:CDS 45.0%
TGTGTGTGACTCATGTGACA+GGG + Chr7:76702476-76702495 MsG0780040374.01.T01:intron 45.0%
! AATCGATTGGCTCAGTTCCA+TGG + Chr7:76703454-76703473 MsG0780040374.01.T01:CDS 45.0%
! CATGCCTCTTTTGTGAGAAG+AGG + Chr7:76702422-76702441 MsG0780040374.01.T01:intron 45.0%
! CGCCTTTTTCTTCCATGTTG+CGG - Chr7:76703716-76703735 None:intergenic 45.0%
! CTTTTTCTTCCATGTTGCGG+CGG - Chr7:76703713-76703732 None:intergenic 45.0%
! GTAATGGAAATTGGGGAGCA+TGG + Chr7:76704051-76704070 MsG0780040374.01.T01:CDS 45.0%
! GTTGTCATTTCTTTGGCTGG+TGG + Chr7:76702607-76702626 MsG0780040374.01.T01:intron 45.0%
! TCAACAACAGGAGCACGATA+TGG - Chr7:76703921-76703940 None:intergenic 45.0%
! TTAGTGCCATGATGATGTCC+GGG - Chr7:76704125-76704144 None:intergenic 45.0%
! TTTTTCTTCCATGTTGCGGC+GGG - Chr7:76703712-76703731 None:intergenic 45.0%
!! TCAATGTGAGTGTCGAGATC+AGG - Chr7:76703624-76703643 None:intergenic 45.0%
!! TGCATGATCATCAGGTTGGT+TGG + Chr7:76702664-76702683 MsG0780040374.01.T01:intron 45.0%
!!! AGGTTTTGGGCTGAGATCAA+CGG + Chr7:76703576-76703595 MsG0780040374.01.T01:CDS 45.0%
!!! TTTTCCCACAAAGGCACTGT+TGG - Chr7:76703423-76703442 None:intergenic 45.0%
!!! ATTTTAATTTAATTTTTCTT+AGG + Chr7:76702365-76702384 MsG0780040374.01.T01:intron 5.0%
AGAAGAAGAAGCGGAGGAAG+AGG + Chr7:76704167-76704186 MsG0780040374.01.T01:CDS 50.0%
AGAGGAAGAAGAAGAAGCGG+AGG + Chr7:76704161-76704180 MsG0780040374.01.T01:CDS 50.0%
ATCAGGCAATGGTATGTCGC+AGG - Chr7:76703607-76703626 None:intergenic 50.0%
CCCCGAACTTTATCTGGATG+TGG + Chr7:76703671-76703690 MsG0780040374.01.T01:CDS 50.0%
CGCCGCAACATGGAAGAAAA+AGG + Chr7:76703711-76703730 MsG0780040374.01.T01:CDS 50.0%
GGATGACTCTGCTGTCAAAG+AGG + Chr7:76703533-76703552 MsG0780040374.01.T01:CDS 50.0%
GGATGTGGAAAGAGAAGCAG+AGG + Chr7:76703686-76703705 MsG0780040374.01.T01:CDS 50.0%
GGTTTCCAACAGTGCCTTTG+TGG + Chr7:76703415-76703434 MsG0780040374.01.T01:CDS 50.0%
GTGGAAAAGGTAGCTACTCC+TGG + Chr7:76704242-76704261 MsG0780040374.01.T01:CDS 50.0%
GTGTGTGTGACTCATGTGAC+AGG + Chr7:76702475-76702494 MsG0780040374.01.T01:intron 50.0%
TCAGGCAATGGTATGTCGCA+GGG - Chr7:76703606-76703625 None:intergenic 50.0%
TCATCATCAAGTGGGGTCAC+TGG + Chr7:76702002-76702021 MsG0780040374.01.T01:CDS 50.0%
TGTCGACCCCGAACTTTATC+TGG + Chr7:76703665-76703684 MsG0780040374.01.T01:CDS 50.0%
! AATCAGTCCTTTTCCGGTCC+TGG + Chr7:76703771-76703790 MsG0780040374.01.T01:CDS 50.0%
! TAGTGCCATGATGATGTCCG+GGG - Chr7:76704124-76704143 None:intergenic 50.0%
!! TCTTTGGCTGGTGGGTTGTT+AGG + Chr7:76702616-76702635 MsG0780040374.01.T01:intron 50.0%
!! TGAGTGTCGAGATCAGGCAA+TGG - Chr7:76703618-76703637 None:intergenic 50.0%
AGAAGAAGCGGAGGAAGAGG+AGG + Chr7:76704170-76704189 MsG0780040374.01.T01:CDS 55.0%
AGGTAGCTACTCCTGGTGCA+TGG + Chr7:76704249-76704268 MsG0780040374.01.T01:CDS 55.0%
TGGATGGGGACCTACTGGAT+GGG + Chr7:76703791-76703810 MsG0780040374.01.T01:CDS 55.0%
TGGCTCAGTTCCATGGCGAA+AGG + Chr7:76703461-76703480 MsG0780040374.01.T01:CDS 55.0%
! AGTCCTTTTCCGGTCCTGGA+TGG + Chr7:76703775-76703794 MsG0780040374.01.T01:CDS 55.0%
! GGAAATTGGGGAGCATGGGA+TGG + Chr7:76704056-76704075 MsG0780040374.01.T01:CDS 55.0%
! GTCCTTTTCCGGTCCTGGAT+GGG + Chr7:76703776-76703795 MsG0780040374.01.T01:CDS 55.0%
! TCCTTTTCCGGTCCTGGATG+GGG + Chr7:76703777-76703796 MsG0780040374.01.T01:CDS 55.0%
AGAAGCGGAGGAAGAGGAGG+AGG + Chr7:76704173-76704192 MsG0780040374.01.T01:CDS 60.0%
AGAGGAGGAGGAGGAGGAAG+AGG + Chr7:76704185-76704204 MsG0780040374.01.T01:CDS 60.0%
AGGTGGAGGAGGAGGAAGGA+GGG + Chr7:76704205-76704224 MsG0780040374.01.T01:CDS 60.0%
AGTAGGTCCCCATCCAGGAC+CGG - Chr7:76703787-76703806 None:intergenic 60.0%
ATGGGGACCTACTGGATGGG+GGG + Chr7:76703794-76703813 MsG0780040374.01.T01:CDS 60.0%
CATCCAGTAGGTCCCCATCC+AGG - Chr7:76703792-76703811 None:intergenic 60.0%
CTGGATGGGGACCTACTGGA+TGG + Chr7:76703790-76703809 MsG0780040374.01.T01:CDS 60.0%
GAAGAGGTGGAGGAGGAGGA+AGG + Chr7:76704201-76704220 MsG0780040374.01.T01:CDS 60.0%
GATGGGGACCTACTGGATGG+GGG + Chr7:76703793-76703812 MsG0780040374.01.T01:CDS 60.0%
GGATGGGGACCTACTGGATG+GGG + Chr7:76703792-76703811 MsG0780040374.01.T01:CDS 60.0%
TCCCCATCCAGGACCGGAAA+AGG - Chr7:76703781-76703800 None:intergenic 60.0%
TCTTCGTCCCCCCATCCAGT+AGG - Chr7:76703804-76703823 None:intergenic 60.0%
AGCGGAGGAAGAGGAGGAGG+AGG + Chr7:76704176-76704195 MsG0780040374.01.T01:CDS 65.0%
GAGGTGGAGGAGGAGGAAGG+AGG + Chr7:76704204-76704223 MsG0780040374.01.T01:CDS 65.0%
GGAGGAAGAGGAGGAGGAGG+AGG + Chr7:76704179-76704198 MsG0780040374.01.T01:CDS 65.0%
GGAGGAAGAGGTGGAGGAGG+AGG + Chr7:76704197-76704216 MsG0780040374.01.T01:CDS 65.0%
GGAGGAGGAAGAGGTGGAGG+AGG + Chr7:76704194-76704213 MsG0780040374.01.T01:CDS 65.0%
GGAGGAGGAGGAAGAGGTGG+AGG + Chr7:76704191-76704210 MsG0780040374.01.T01:CDS 65.0%
GGAGGAGGAGGAGGAAGAGG+TGG + Chr7:76704188-76704207 MsG0780040374.01.T01:CDS 65.0%
GGCGAGGCAGCCGTGATTCT+TGG + Chr7:76703732-76703751 MsG0780040374.01.T01:CDS 65.0%
GGTCCTGGATGGGGACCTAC+TGG + Chr7:76703786-76703805 MsG0780040374.01.T01:CDS 65.0%
GGTGGAGGAGGAGGAAGGAG+GGG + Chr7:76704206-76704225 MsG0780040374.01.T01:CDS 65.0%
AGCAGAGGCCCGCCGCAACA+TGG + Chr7:76703701-76703720 MsG0780040374.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 76701968 76704274 76701968 ID=MsG0780040374.01;Name=MsG0780040374.01
Chr7 mRNA 76701968 76704274 76701968 ID=MsG0780040374.01.T01;Parent=MsG0780040374.01;Name=MsG0780040374.01.T01;_AED=0.45;_eAED=0.53;_QI=0|0|0|1|0|0.33|3|0|355
Chr7 exon 76701968 76702060 76701968 ID=MsG0780040374.01.T01:exon:14691;Parent=MsG0780040374.01.T01
Chr7 exon 76702387 76702433 76702387 ID=MsG0780040374.01.T01:exon:14692;Parent=MsG0780040374.01.T01
Chr7 exon 76703347 76704274 76703347 ID=MsG0780040374.01.T01:exon:14693;Parent=MsG0780040374.01.T01
Chr7 CDS 76701968 76702060 76701968 ID=MsG0780040374.01.T01:cds;Parent=MsG0780040374.01.T01
Chr7 CDS 76702387 76702433 76702387 ID=MsG0780040374.01.T01:cds;Parent=MsG0780040374.01.T01
Chr7 CDS 76703347 76704274 76703347 ID=MsG0780040374.01.T01:cds;Parent=MsG0780040374.01.T01
Gene Sequence

>MsG0780040374.01.T01

ATGGATAATTGGAGAAAAACCAAGGGATCAGTAATCATCATCAAGTGGGGTCACTGGAAATCCTCATCGTCCTATAAAGAAAGCCACCTTTGGGATGAGTTTTGGTTTGATGGTCTCAATATGAAAAGCATGCCTCTTTTGTGTGATTATAGGTTATCCCTTAAATTACCAATTGATTCTATTTATTCCTTTTGGTTCGCAGATAATAGGTTTCCAACAGTGCCTTTGTGGGAAAAGAAGTTTTGTGAATCGATTGGCTCAGTTCCATGGCGAAAGGTAATAGAAGGCAATAAGTATATGTATCTGCATCCCAATGTGGTAAATTGGGATGACTCTGCTGTCAAAGAGGCATTTGACAATGCAAAAAACAGGTTTTGGGCTGAGATCAACGGCATTCCCTGCGACATACCATTGCCTGATCTCGACACTCACATTGATGATGTAGATTGGAATGCAAGTGTCGACCCCGAACTTTATCTGGATGTGGAAAGAGAAGCAGAGGCCCGCCGCAACATGGAAGAAAAAGGCGAGGCAGCCGTGATTCTTGGTAGTTCTCTTCTCTTGAATCAGTCCTTTTCCGGTCCTGGATGGGGACCTACTGGATGGGGGGACGAAGAAGAAAAAGAAGTAACAAAGACTTCTGAACAGAATTATGCTGCTCAGGGATGGGAATTGAACCAACATGAAAATAATGAAACAAACTCTTGGGAACCATATCGTGCTCCTGTTGTTGAACCTTCAAAGGAATATGGTTGGCGAAATGGCCAGAATGATTATCATGGATGGAATCAGACGGAGCAATATGGTGCTGACTTGCATAACAAGTATCAAGGAAGAAATGGCGGTAATGGAAATTGGGGAGCATGGGATGGATATAACAGAAAGAGAGAAAACAATATGTCGTGGTCTAATAACCCCGGACATCATCATGGCACTAATGAATATCAGATGAATAGAGGAAGAAGAAGAAGCGGAGGAAGAGGAGGAGGAGGAGGAAGAGGTGGAGGAGGAGGAAGGAGGGGAAATTTTTCTTATGTGGAAAAGGTAGCTACTCCTGGTGCATGGTAA

Protein sequence

>MsG0780040374.01.T01

MDNWRKTKGSVIIIKWGHWKSSSSYKESHLWDEFWFDGLNMKSMPLLCDYRLSLKLPIDSIYSFWFADNRFPTVPLWEKKFCESIGSVPWRKVIEGNKYMYLHPNVVNWDDSAVKEAFDNAKNRFWAEINGIPCDIPLPDLDTHIDDVDWNASVDPELYLDVEREAEARRNMEEKGEAAVILGSSLLLNQSFSGPGWGPTGWGDEEEKEVTKTSEQNYAAQGWELNQHENNETNSWEPYRAPVVEPSKEYGWRNGQNDYHGWNQTEQYGADLHNKYQGRNGGNGNWGAWDGYNRKRENNMSWSNNPGHHHGTNEYQMNRGRRRSGGRGGGGGRGGGGGRRGNFSYVEKVATPGAW*