AlfalfaGEDB | MsG0180005397.01

M. sativa cultivar ZhongmuNo.1 / MsG0180005397.01

KEGG: -
GO: -
PFAM: PF13837

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005397.01.T01	XP_003592114.1	92.378	656	26	6	1	651	1	637	0	1066

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005397.01.T01	Q39117	44.621	567	207	15	56	601	38	518	1.36E-139	422

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005397.01.T01	G7ICZ1	92.378	656	26	6	1	651	1	637	0.0	1066

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048016.01	MsG0180005397.01	0.828051	1.114209e-54	1.095089e-51
MsG0080048938.01	MsG0180005397.01	0.828554	8.427517e-55	8.405169e-52
MsG0080049068.01	MsG0180005397.01	0.811334	7.374568e-51	4.552122e-48
MsG0180000114.01	MsG0180005397.01	0.847976	8.223929e-60	1.486909e-56
MsG0180000246.01	MsG0180005397.01	0.827195	1.789352e-54	1.715306e-51
MsG0180000354.01	MsG0180005397.01	0.806314	8.734373e-50	4.725807e-47
MsG0180000355.01	MsG0180005397.01	0.820443	6.840930e-53	5.413697e-50
MsG0180000481.01	MsG0180005397.01	0.814582	1.431765e-51	9.644540e-49
MsG0180000482.01	MsG0180005397.01	0.858721	6.781803e-63	1.747477e-59
MsG0180000785.01	MsG0180005397.01	0.827474	1.534006e-54	1.482524e-51

Showing 1 to 10 of 204 entries

Previous1 2 3 4 5…21Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005397.01.T01	MTR_1g098900	92.378	656	26	6	1	651	1	637	0.0	1066
MsG0180005397.01.T01	MTR_6g035370	53.994	626	197	14	1	584	1	577	3.72e-163	483
MsG0180005397.01.T01	MTR_1g098870	45.274	603	221	11	2	598	3	502	1.55e-144	432
MsG0180005397.01.T01	MTR_2g026725	36.170	329	172	6	245	572	76	367	4.22e-52	184
MsG0180005397.01.T01	MTR_2g026725	43.820	89	47	2	58	144	261	348	2.44e-16	81.6
MsG0180005397.01.T01	MTR_1g081180	35.077	325	173	8	271	576	224	529	1.08e-43	165
MsG0180005397.01.T01	MTR_1g081180	41.000	100	56	2	48	144	407	506	1.96e-16	83.2
MsG0180005397.01.T01	MTR_1g492790	33.654	312	155	10	58	362	113	379	5.21e-40	154
MsG0180005397.01.T01	MTR_1g492790	40.541	111	62	3	449	556	94	203	7.42e-19	90.5
MsG0180005397.01.T01	MTR_7g114860	34.050	279	136	6	288	557	241	480	5.59e-39	150

Showing 1 to 10 of 14 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005397.01.T01	AT1G76890	44.621	567	207	15	56	601	38	518	1.39e-140	422
MsG0180005397.01.T01	AT1G76880	53.538	325	102	6	49	366	51	333	2.08e-89	290
MsG0180005397.01.T01	AT5G03680	30.677	502	223	12	59	548	119	507	4.74e-57	203
MsG0180005397.01.T01	AT5G03680	44.944	89	47	2	467	554	119	206	8.24e-18	87.8
MsG0180005397.01.T01	AT5G28300	37.143	280	140	8	288	554	300	556	1.21e-46	175
MsG0180005397.01.T01	AT5G28300	40.385	104	51	2	52	144	452	555	5.65e-16	82.0
MsG0180005397.01.T01	AT3G10000	33.815	346	163	9	34	373	59	344	1.61e-42	160
MsG0180005397.01.T01	AT3G10000	43.434	99	55	1	459	556	80	178	7.98e-21	96.7
MsG0180005397.01.T01	AT1G33240	66.972	109	31	2	58	164	61	166	7.72e-40	155
MsG0180005397.01.T01	AT1G33240	66.972	109	31	2	58	164	61	166	1.89e-39	154

Showing 1 to 10 of 17 entries

Previous1 2Next

Find 209 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGGAAGAGGGTTGG+TGG	0.469141	1:+91351155	None:intergenic
AAAATAAGAGAAACTATGCT+AGG	0.578777	1:-91352865	MsG0180005397.01.T01:exon
AAAATAGTTGAAGGATTGGA+TGG	0.481737	1:+91351204	None:intergenic
AAAGAGGAAGCGGAAATGGA+AGG	0.590185	1:-91351046	MsG0180005397.01.T01:CDS
AAAGATATCTCCTCCCATAG+AGG	0.576930	1:+91350406	None:intergenic
AAATAGTTGAAGGATTGGAT+GGG	0.593793	1:+91351205	None:intergenic
AAATTGGACAAGATTATTTG+AGG	0.496020	1:-91349490	MsG0180005397.01.T01:three_prime_UTR
AACAATGGTGAGACTTTCAT+GGG	0.588661	1:-91350529	MsG0180005397.01.T01:CDS
AACATGACGGCGGAAGGTGG+TGG	0.613643	1:-91352781	MsG0180005397.01.T01:CDS
AACGGTGCCGCCATGCTCTC+GGG	0.453957	1:+91350166	None:intergenic

Showing 1 to 10 of 209 entries

Previous1 2 3 4 5…21Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAGTTGAAGGATTGGA+TGG	+	Chr1:91351228-91351247	None:intergenic	30.0%
AAAATGCATGAACTGAAGTT+AGG	+	Chr1:91350414-91350433	None:intergenic	30.0%
AAATAGTTGAAGGATTGGAT+GGG	+	Chr1:91351227-91351246	None:intergenic	30.0%
AAGAAGCAAAAACCAAATGA+TGG	+	Chr1:91350070-91350089	None:intergenic	30.0%
AAGAATTTGAATATGTACGG+TGG	-	Chr1:91352662-91352681	MsG0180005397.01.T01:CDS	30.0%
AAGTAGTGTTAATTGCAACA+TGG	+	Chr1:91350571-91350590	None:intergenic	30.0%
AGAAGATGATGAAGAAGATA+TGG	-	Chr1:91352400-91352419	MsG0180005397.01.T01:intron	30.0%
AGATCTATTATCCAATTCCA+TGG	-	Chr1:91351311-91351330	MsG0180005397.01.T01:CDS	30.0%
AGCAATAGAGACCTTAATTA+AGG	-	Chr1:91352875-91352894	MsG0180005397.01.T01:five_prime_UTR	30.0%
ATGGATGAAGATGATAAAGA+TGG	-	Chr1:91352371-91352390	MsG0180005397.01.T01:intron	30.0%

Showing 1 to 10 of 291 entries

Previous1 2 3 4 5…30Next

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	91349388	91353063	91349388	ID=MsG0180005397.01;Name=MsG0180005397.01
Chr1	mRNA	91349388	91353063	91349388	ID=MsG0180005397.01.T01;Parent=MsG0180005397.01;Name=MsG0180005397.01.T01;_AED=0.47;_eAED=0.47;_QI=191\|1\|1\|1\|1\|1\|2\|567\|651
Chr1	exon	91349388	91351629	91349388	ID=MsG0180005397.01.T01:exon:17697;Parent=MsG0180005397.01.T01
Chr1	exon	91352592	91353063	91352592	ID=MsG0180005397.01.T01:exon:17696;Parent=MsG0180005397.01.T01
Chr1	five_prime_UTR	91352873	91353063	91352873	ID=MsG0180005397.01.T01:five_prime_utr;Parent=MsG0180005397.01.T01
Chr1	CDS	91352592	91352872	91352592	ID=MsG0180005397.01.T01:cds;Parent=MsG0180005397.01.T01
Chr1	CDS	91349955	91351629	91349955	ID=MsG0180005397.01.T01:cds;Parent=MsG0180005397.01.T01
Chr1	three_prime_UTR	91349388	91349954	91349388	ID=MsG0180005397.01.T01:three_prime_utr;Parent=MsG0180005397.01.T01

Gene Sequence

>MsG0180005397.01.T01

ATGCTAGGTGACTCAGCTGTTTTAAGTGGTGGCGGTGGAGATGCAGCAGCAGCAGCAGCTGCACCACCTAACATGACGGCGGAAGGTGGTGGTGGTGGTGGAGTTGGATCAAATTCAGAGAGTGATGTTGAAAGAGGAAGAGTTGAAGATGGTGAACGTAGCTTCGGTGGTAACCGGTGGCCGCGACAAGAAACTTTGGCGCTTTTAAGCATACGATCGGATATGGATACAGTGTTTCGAGATGCAAGTGTTAAAGGTCCTTTGTGGGATGAAGTTTCAAGGAAGCTAGCAGAACTTGGGTACCACAGAAGTTCAAAGAAATGCAAAGAGAAGTTTGAGAATGTTTATAAGTATCACAAGAGAACCAAAGATGGCCGAGGTGGAAAATCAGATGGTAAAACTTATCGATTTTTTGATCAATTAGAAGCCCTTGATCATTTTCATACCAACCCTTCAACTCATCAACATCAACCTCAAAACATAGCAAAACCACCACAAATTTCGGCACCAACACCGTCACAAGTTGTTACAACTGCAACAGTTTCACTACCAATAACAGAAGCAACAATGTCACAAGTGGTTAACACCACTCTAAGTATCCCTCATGCAACTGTTCCATCAATTTCAGTGCCTCAAAACAATATTGCAACTACCCAACCAATTATCAATATGAATCCTACAATCCCATCCAATCCTTCAACTATTTTCCAACCATCAACAACAAACCCTACTTCCACCAACCCTCTTCCATCTTTTCCTAACATTTCTACAGATCTATTATCCAATTCCATGGCTAGCTCCTACTCGACGTCTTCCGAAGACACAACGGAAGAAGGATCTCGAAAGAGGAAGCGGAAATGGAAGGACTTTTTTGAGAGAATAATGAAGAAAGTGACAGAGAAGCAAGAGGATTTGCAGAGGAGATTCTTGGAGGTCATTGAGAAACGCGAGCAGGAACGAGTTGTTAGAGAAGAAGCGTGGAGAGCACAAGAGATGCAAAGAATCAATAGAGAGAGGGAAATGCTTGCACAAGAAAGATCTATAACTGCAGCAAAAGATGCTGCAGTCATGTCTTTCTTGCAAAAAATTGCGGAACAACAAAATCTAGGACAAGCATTGCATAACATCAACATTGCACAACCACCGCCACCACAACAAACACAACAACAACAACAACAACAACCACCACAAAGAAGTGTAGCACCAACACCAACACCGGCGGTAGCACCAATATCAGTGGTACAAGTTAACACAACACCGCCAGCACAACCACCCCCGGCAACCAAGTTGGGCCCAACAATAGTCCCGCAACACCAGCAACAACAATTGGTGACGAATATGGAAATTGTGAAAGTTGATAACAATGGTGAGACTTTCATGGGAGGGATGAGTTCGTCAAGGTGGCCGAAAGTTGAAGTTCAAGCACTGATAAATCTGAGGACGAGCATGGACAACAAGTACCAAGAGAATGGACCAAAAGGTCCTCTATGGGAGGAGATATCTTTAGCAATGAAGAACCTCGGTTACAATAGGAATGCAAAAAGGTGCAAAGAAAAATGGGAGAATATAAACAAGTACTTCAAGAAAGTGAAAGAAAGTAACAAAAAGAGACCCGAAGATTCAAAGACATGTCCTTATTTTCATCAGTTGGATGCTTTGTATAAGGAGAAAGGAAAGGGAGAAAATTCTAGTGGTGGAGCTGGTTCGAACCAGGTGGTGCAGCCCGAGAGCATGGCGGCACCGTTGATGGTTCAGCCGGAGCAGCAATGGCGGCCACCTCAGCAGGGAGAAGATAACATGGAGCAGAACCGTGGACAGGAAGAAGAAGATATGGATGAAGATGATAAAGATGGTGAGGAAGAAGATGATGAAGAAGATATGGATGAAAGTGGTGGTGGTGGTGGTGGTAACTTTGAGGTAGTGGCAAACAAACCTGCAGTGGGTGCATCAGCTTGA

Protein sequence

>MsG0180005397.01.T01

MLGDSAVLSGGGGDAAAAAAAPPNMTAEGGGGGGVGSNSESDVERGRVEDGERSFGGNRWPRQETLALLSIRSDMDTVFRDASVKGPLWDEVSRKLAELGYHRSSKKCKEKFENVYKYHKRTKDGRGGKSDGKTYRFFDQLEALDHFHTNPSTHQHQPQNIAKPPQISAPTPSQVVTTATVSLPITEATMSQVVNTTLSIPHATVPSISVPQNNIATTQPIINMNPTIPSNPSTIFQPSTTNPTSTNPLPSFPNISTDLLSNSMASSYSTSSEDTTEEGSRKRKRKWKDFFERIMKKVTEKQEDLQRRFLEVIEKREQERVVREEAWRAQEMQRINREREMLAQERSITAAKDAAVMSFLQKIAEQQNLGQALHNINIAQPPPPQQTQQQQQQQPPQRSVAPTPTPAVAPISVVQVNTTPPAQPPPATKLGPTIVPQHQQQQLVTNMEIVKVDNNGETFMGGMSSSRWPKVEVQALINLRTSMDNKYQENGPKGPLWEEISLAMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYKEKGKGENSSGGAGSNQVVQPESMAAPLMVQPEQQWRPPQQGEDNMEQNRGQEEEDMDEDDKDGEEEDDEEDMDESGGGGGGNFEVVANKPAVGASA*