AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004541.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004541.01.T01 MTR_1g082210 89.275 345 7 1 1 315 1 345 0.0 622
MsG0180004541.01.T01 MTR_1g089310 63.478 345 94 3 1 314 1 344 3.52e-160 451
MsG0180004541.01.T01 MTR_1g089310 63.478 345 94 3 1 314 17 360 4.42e-160 451
MsG0180004541.01.T01 MTR_7g093950 62.393 351 94 5 1 314 1 350 1.24e-156 442
MsG0180004541.01.T01 MTR_6g065400 36.095 338 179 4 7 311 1 334 8.22e-66 210
MsG0180004541.01.T01 MTR_6g065110 35.882 340 181 4 9 315 4 339 1.24e-63 204
MsG0180004541.01.T01 MTR_6g065120 34.911 338 182 5 8 311 3 336 4.09e-61 198
MsG0180004541.01.T01 MTR_6g065370 34.320 338 185 4 7 311 1 334 1.37e-59 194
MsG0180004541.01.T01 MTR_6g065270 31.940 335 195 3 10 311 2 336 6.29e-57 187
MsG0180004541.01.T01 MTR_6g065430 33.871 310 159 6 36 310 29 327 8.58e-49 166
MsG0180004541.01.T01 MTR_6g065340 32.012 328 197 5 5 311 7 329 4.91e-48 164
MsG0180004541.01.T01 MTR_7g406880 33.761 234 123 5 61 273 54 276 3.72e-32 122
MsG0180004541.01.T01 MTR_3g101420 32.710 214 114 5 53 255 32 226 4.33e-31 119
MsG0180004541.01.T01 MTR_1g102170 33.333 240 133 8 32 264 37 256 1.14e-30 118
MsG0180004541.01.T01 MTR_6g464120 32.645 242 133 8 32 264 23 243 1.47e-29 118
MsG0180004541.01.T01 MTR_4g050140 30.208 288 142 8 67 310 43 315 6.97e-29 113
MsG0180004541.01.T01 MTR_8g035540 30.603 232 133 6 38 255 14 231 8.69e-29 113
MsG0180004541.01.T01 MTR_1g012430 32.432 222 125 6 38 253 16 218 3.93e-28 111
MsG0180004541.01.T01 MTR_7g056207 32.857 210 117 5 53 252 65 260 1.06e-27 110
MsG0180004541.01.T01 MTR_6g464280 30.222 225 138 6 37 254 23 235 3.82e-27 108
MsG0180004541.01.T01 MTR_0007s0520 31.754 211 122 5 53 254 38 235 4.84e-27 108
MsG0180004541.01.T01 MTR_6g464510 31.343 201 115 5 63 254 52 238 5.70e-27 108
MsG0180004541.01.T01 MTR_1g111280 33.032 221 114 5 53 255 51 255 7.45e-27 108
MsG0180004541.01.T01 MTR_8g035520 30.263 228 135 4 37 254 25 238 1.68e-26 107
MsG0180004541.01.T01 MTR_6g464320 31.197 234 139 7 31 254 15 236 1.83e-26 107
MsG0180004541.01.T01 MTR_1g102160 31.754 211 120 5 55 254 40 237 2.19e-26 106
MsG0180004541.01.T01 MTR_4g086540 30.769 195 113 6 38 227 31 208 9.25e-26 104
MsG0180004541.01.T01 MTR_4g086510 28.188 298 163 9 53 311 33 318 9.48e-26 104
MsG0180004541.01.T01 MTR_7g107040 26.207 290 150 8 67 312 45 314 8.81e-24 99.8
MsG0180004541.01.T01 MTR_6g022710 32.447 188 88 2 105 253 160 347 1.87e-23 100
MsG0180004541.01.T01 MTR_8g035500 30.579 242 139 7 25 254 8 232 2.25e-23 98.2
MsG0180004541.01.T01 MTR_4g086480 30.332 211 118 8 53 252 37 229 4.19e-23 97.8
MsG0180004541.01.T01 MTR_5g005920 30.631 222 124 7 25 229 9 217 3.24e-22 95.5
MsG0180004541.01.T01 MTR_4g086470 31.414 191 106 6 53 232 36 212 8.58e-22 94.0
MsG0180004541.01.T01 MTR_3g450680 30.734 218 111 8 38 232 29 229 3.29e-21 92.4
MsG0180004541.01.T01 MTR_5g005850 30.144 209 112 7 38 229 26 217 5.24e-21 92.0
MsG0180004541.01.T01 MTR_1g105020 30.476 210 111 6 38 230 21 212 2.19e-20 90.1
MsG0180004541.01.T01 MTR_5g005900 26.339 224 128 6 23 230 12 214 5.83e-20 89.0
MsG0180004541.01.T01 MTR_3g012440 27.542 236 130 4 97 292 80 314 2.80e-19 87.4
MsG0180004541.01.T01 MTR_1g104930 35.204 196 94 7 38 220 25 200 2.21e-18 84.3
MsG0180004541.01.T01 MTR_8g040860 27.461 193 113 5 54 233 43 221 9.38e-18 82.8
MsG0180004541.01.T01 MTR_7g051020 34.320 169 85 4 65 220 48 203 1.12e-17 82.4
MsG0180004541.01.T01 MTR_1g104933 34.911 169 81 5 65 220 46 198 5.73e-17 80.5
MsG0180004541.01.T01 MTR_6g065470 35.461 141 72 4 33 169 37 162 1.27e-15 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004541.01.T01 AT5G27320 69.186 344 75 3 1 314 1 343 2.84e-176 491
MsG0180004541.01.T01 AT3G05120 67.536 345 81 3 1 314 1 345 6.20e-172 480
MsG0180004541.01.T01 AT3G63010 60.174 344 104 4 1 312 1 343 2.59e-151 429
MsG0180004541.01.T01 AT5G23530 32.659 346 179 8 1 311 1 327 1.04e-52 176
MsG0180004541.01.T01 AT5G62180 33.913 230 136 5 32 254 15 235 1.18e-36 134
MsG0180004541.01.T01 AT1G68620 37.500 200 107 4 62 254 57 245 1.43e-34 129
MsG0180004541.01.T01 AT1G47480 32.159 227 129 6 33 255 16 221 2.26e-30 117
MsG0180004541.01.T01 AT3G48700 36.715 207 91 7 50 233 27 216 1.02e-29 115
MsG0180004541.01.T01 AT2G03550 28.481 316 160 10 39 311 19 311 3.56e-29 114
MsG0180004541.01.T01 AT1G19190 34.579 214 109 7 53 253 30 225 1.53e-28 112
MsG0180004541.01.T01 AT2G45610 31.227 269 151 9 32 283 16 267 6.72e-28 110
MsG0180004541.01.T01 AT5G16080 33.032 221 117 6 53 257 53 258 1.31e-27 110
MsG0180004541.01.T01 AT3G48690 32.420 219 115 6 53 255 30 231 1.72e-27 109
MsG0180004541.01.T01 AT2G45600 33.333 204 108 5 65 254 39 228 8.55e-27 107
MsG0180004541.01.T01 AT1G49650 32.597 181 102 4 53 224 86 255 9.39e-26 105
MsG0180004541.01.T01 AT5G14310 32.124 193 86 3 105 253 151 342 1.60e-25 106
MsG0180004541.01.T01 AT1G49640 29.570 186 117 4 54 235 32 207 9.80e-24 99.4
MsG0180004541.01.T01 AT1G49660 32.620 187 101 5 53 227 30 203 1.11e-23 99.4
MsG0180004541.01.T01 AT5G06570 30.159 315 151 10 47 312 33 327 5.44e-23 97.4
MsG0180004541.01.T01 AT5G06570 30.159 315 151 10 47 312 33 327 5.44e-23 97.4
MsG0180004541.01.T01 AT5G06570 30.255 314 150 10 47 311 48 341 7.28e-23 97.4
MsG0180004541.01.T01 AT5G06570 30.255 314 150 10 47 311 48 341 7.28e-23 97.4
MsG0180004541.01.T01 AT3G27320 32.642 193 85 4 105 253 134 325 2.65e-22 97.1
MsG0180004541.01.T01 AT3G27320 32.642 193 85 4 105 253 166 357 3.90e-22 96.7

Find 96 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGAGAAATGCTCATTATT+TGG 0.229509 1:-79389991 None:intergenic
AAATGCTTCTTCTTTCTTGA+TGG 0.233142 1:+79388355 MsG0180004541.01.T01:five_prime_UTR
TTGTCGTCTCGGTGAATTAT+AGG 0.247260 1:+79389441 MsG0180004541.01.T01:CDS
ATGGGTGGAAAGCTGTTAAA+TGG 0.260029 1:+79389501 MsG0180004541.01.T01:CDS
TAATGTTACCTTTGAATCAT+TGG 0.295142 1:-79388477 None:intergenic
TCTCCTCCTTCATTCACCTT+TGG 0.302485 1:+79388326 MsG0180004541.01.T01:five_prime_UTR
ATTGTATGCTAACTTGAAAT+TGG 0.306162 1:-79389096 None:intergenic
AATGTTACCTTTGAATCATT+GGG 0.326815 1:-79388476 None:intergenic
TCCAGCTTTCTCAAGTCCTT+TGG 0.334783 1:-79389914 None:intergenic
TCCACAGGATTCGCATTTGC+TGG 0.346221 1:-79389182 None:intergenic
ATGATCTCTGTCTTCCCTTC+AGG 0.346289 1:-79389776 None:intergenic
AGCATTGGACTCTGGGATTC+CGG 0.350883 1:+79389628 MsG0180004541.01.T01:CDS
ATAGGCGTGCGCCTGAAAAT+AGG 0.363489 1:+79389459 MsG0180004541.01.T01:CDS
CTTGTTCAGGATTGGCAATT+GGG 0.363782 1:+79389886 MsG0180004541.01.T01:intron
TCTTGTTCAGGATTGGCAAT+TGG 0.368427 1:+79389885 MsG0180004541.01.T01:intron
GACTCTGGGATTCCGGTGTT+GGG 0.383791 1:+79389635 MsG0180004541.01.T01:CDS
TGGCTATGTTGCGGTGTGAT+TGG 0.392294 1:+79388223 None:intergenic
CATTGAAAGCATTGGACTCT+GGG 0.392347 1:+79389621 MsG0180004541.01.T01:CDS
GGACTCTGGGATTCCGGTGT+TGG 0.395996 1:+79389634 MsG0180004541.01.T01:CDS
ATACTGCTAAACCCTTTGTT+TGG 0.396562 1:+79389662 MsG0180004541.01.T01:CDS
TTCTCGAGCAAGCCACGGTT+GGG 0.404625 1:+79389956 MsG0180004541.01.T01:CDS
GGAAGAACCTCAGCAGTAAC+AGG 0.409700 1:-79389317 None:intergenic
AGAAAATGCTAAAGTAAAAC+AGG 0.416926 1:-79388264 None:intergenic
GAATCCGAAAAGCGTCTTGA+TGG 0.417426 1:+79389701 MsG0180004541.01.T01:CDS
TGAAAGATAGAGACTGGTAT+TGG 0.418998 1:+79389741 MsG0180004541.01.T01:CDS
TGTTGTTCTTCTCCCTCAAC+AGG 0.421393 1:-79389269 None:intergenic
CGAATCTACCGTCCTGTTGA+GGG 0.426280 1:+79389257 MsG0180004541.01.T01:CDS
TGCTAAACCCTTTGTTTGGC+GGG 0.429653 1:+79389666 MsG0180004541.01.T01:CDS
AGTTGGTTACTTCCAGCCAT+TGG 0.441895 1:-79388449 None:intergenic
AACAAAATCAATCCAATGGC+TGG 0.444127 1:+79388437 MsG0180004541.01.T01:exon
ATCAAAACCCACATGTTCAA+TGG 0.451446 1:-79389071 None:intergenic
CCTGTTGTCATGTTCTTCCA+CGG 0.459630 1:+79389338 MsG0180004541.01.T01:CDS
TATCCTTGCGCTTATGAAGA+TGG 0.468068 1:+79389482 MsG0180004541.01.T01:CDS
GCATTGAAAGCATTGGACTC+TGG 0.474324 1:+79389620 MsG0180004541.01.T01:CDS
TTTCTCGAGCAAGCCACGGT+TGG 0.476045 1:+79389955 MsG0180004541.01.T01:CDS
TGGGTGGAAAGCTGTTAAAT+GGG 0.477103 1:+79389502 MsG0180004541.01.T01:CDS
CTAAAGTAAAACAGGAATGA+AGG 0.478351 1:-79388256 None:intergenic
GAGTGGTGAAGGATAAGAAA+AGG 0.484696 1:-79388297 None:intergenic
CTACATGGTTGGTGATAGCT+CGG 0.486021 1:+79389574 MsG0180004541.01.T01:CDS
TTGTAATGCTGTTGTCGTCT+CGG 0.487442 1:+79389430 MsG0180004541.01.T01:CDS
GGAGAAGAGAAGAGTGGTGA+AGG 0.487809 1:-79388308 None:intergenic
CTTTCTTCCCCGCCAAACAA+AGG 0.487810 1:-79389674 None:intergenic
CTGCTAAACCCTTTGTTTGG+CGG 0.491910 1:+79389665 MsG0180004541.01.T01:CDS
GTAGATTCGAGTAAGGAGAT+TGG 0.497470 1:-79389243 None:intergenic
TGGAACTTTCAACCGTGACT+TGG 0.499887 1:+79389136 MsG0180004541.01.T01:CDS
CCGTGGAAGAACATGACAAC+AGG 0.502089 1:-79389338 None:intergenic
GCCAAAGGACTTGAGAAAGC+TGG 0.509171 1:+79389913 MsG0180004541.01.T01:CDS
TTTCTTCCCCGCCAAACAAA+GGG 0.509175 1:-79389673 None:intergenic
AATCTTCTCCGTCGTCCTGA+TGG 0.518337 1:+79389116 MsG0180004541.01.T01:CDS
TTGAATCATTGGGGTTGAGT+TGG 0.528438 1:-79388466 None:intergenic
TGATACATTGTGTCGTCGAT+TGG 0.529626 1:+79389400 MsG0180004541.01.T01:CDS
CCATGTTGCATTGAAAGCAT+TGG 0.529699 1:+79389613 MsG0180004541.01.T01:CDS
AATGGGTTAACTCTAGAACT+TGG 0.530294 1:+79389519 MsG0180004541.01.T01:CDS
ACAGGAATGAAGGGAAAGAA+TGG 0.532589 1:-79388246 None:intergenic
TCGAATCTACCGTCCTGTTG+AGG 0.542489 1:+79389256 MsG0180004541.01.T01:CDS
GAAGATCCAAAGGTGAATGA+AGG 0.544391 1:-79388332 None:intergenic
TCACGGTTGAAAGTTCCATC+AGG 0.545176 1:-79389131 None:intergenic
ACTTGGCAGAGTTTCTTGAT+CGG 0.546431 1:+79389153 MsG0180004541.01.T01:CDS
ATCCTTGCGCTTATGAAGAT+GGG 0.546497 1:+79389483 MsG0180004541.01.T01:CDS
AATCCGAAAAGCGTCTTGAT+GGG 0.557814 1:+79389702 MsG0180004541.01.T01:CDS
TCAGAGTGAAAGATAGAGAC+TGG 0.557918 1:+79389735 MsG0180004541.01.T01:CDS
GAAGGAGGAGAAGAGAAGAG+TGG 0.568713 1:-79388314 None:intergenic
TAAAGTAAAACAGGAATGAA+GGG 0.568741 1:-79388255 None:intergenic
AGCAGTATATTTCCCAACAC+CGG 0.572967 1:-79389647 None:intergenic
CAGGACGGTAGATTCGAGTA+AGG 0.573555 1:-79389250 None:intergenic
CACCCATCTTCATAAGCGCA+AGG 0.575641 1:-79389485 None:intergenic
AAGGTTCATATCTACATGGT+TGG 0.580511 1:+79389563 MsG0180004541.01.T01:CDS
TGAGCATTTCTCTGTTGTCA+TGG 0.580679 1:+79389999 MsG0180004541.01.T01:CDS
ATGGTTGGTGATAGCTCGGG+CGG 0.594503 1:+79389578 MsG0180004541.01.T01:CDS
TACATGGTTGGTGATAGCTC+GGG 0.594607 1:+79389575 MsG0180004541.01.T01:CDS
ACATTGTGTCGTCGATTGGT+TGG 0.596982 1:+79389404 MsG0180004541.01.T01:CDS
AGAAGCATTTGAAGATCCAA+AGG 0.597630 1:-79388342 None:intergenic
CAGCAGTAACAGGCTTCTCA+AGG 0.598120 1:-79389307 None:intergenic
TGGTGGTTCCATTGAACATG+TGG 0.598890 1:+79389063 MsG0180004541.01.T01:CDS
TGAGAAGCCTGTTACTGCTG+AGG 0.600623 1:+79389310 MsG0180004541.01.T01:CDS
ACTCAACCCCAATGATTCAA+AGG 0.601718 1:+79388469 MsG0180004541.01.T01:CDS
ATGTTACCTTTGAATCATTG+GGG 0.602888 1:-79388475 None:intergenic
ACTCAACAAAATCAATCCAA+TGG 0.603090 1:+79388433 MsG0180004541.01.T01:exon
GCTATTTCTCGAGCAAGCCA+CGG 0.605537 1:+79389951 MsG0180004541.01.T01:CDS
GCTAAACCCTTTGTTTGGCG+GGG 0.608927 1:+79389667 MsG0180004541.01.T01:CDS
AAAGAGAAAACACCATCCAC+AGG 0.610297 1:-79389197 None:intergenic
CAAGAAACTCTGCCAAGTCA+CGG 0.617005 1:-79389148 None:intergenic
TGAAAGTTCCATCAGGACGA+CGG 0.623383 1:-79389124 None:intergenic
TAGCAAGGTTCATATCTACA+TGG 0.626488 1:+79389559 MsG0180004541.01.T01:CDS
GTTCTTCTCCCTCAACAGGA+CGG 0.631361 1:-79389265 None:intergenic
TGGCAATTGGGATATGCCAA+AGG 0.633591 1:+79389898 MsG0180004541.01.T01:CDS
CTTGCGCTTATGAAGATGGG+TGG 0.634175 1:+79389486 MsG0180004541.01.T01:CDS
TCCAGCAAATGCGAATCCTG+TGG 0.635598 1:+79389181 MsG0180004541.01.T01:CDS
GATCCAAAGGTGAATGAAGG+AGG 0.637419 1:-79388329 None:intergenic
CCAATGCTTTCAATGCAACA+TGG 0.638442 1:-79389613 None:intergenic
GGTGGTTCCATTGAACATGT+GGG 0.653078 1:+79389064 MsG0180004541.01.T01:CDS
TGGTTGGTGATAGCTCGGGC+GGG 0.665839 1:+79389579 MsG0180004541.01.T01:CDS
GTTGTCATGTTCTTCCACGG+TGG 0.676583 1:+79389341 MsG0180004541.01.T01:CDS
GCAAATGCGAATCCTGTGGA+TGG 0.677631 1:+79389185 MsG0180004541.01.T01:CDS
TAGCAAGTAAAACCCAACCG+TGG 0.774514 1:-79389968 None:intergenic
AATGTGCAAAACTTCCACCG+TGG 0.777602 1:-79389355 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCATTTTTTAATATTGTTA+TGG + Chr1:79388792-79388811 MsG0180004541.01.T01:intron 10.0%
!! CTTAATTTCTCTAAATTAAT+GGG + Chr1:79388920-79388939 MsG0180004541.01.T01:intron 15.0%
!! TCTTAATTTCTCTAAATTAA+TGG + Chr1:79388919-79388938 MsG0180004541.01.T01:intron 15.0%
!!! TTTGGTTTAAAATTTCATTT+TGG + Chr1:79388943-79388962 MsG0180004541.01.T01:intron 15.0%
!!! TTTTGTTTCATACAAATTTA+AGG + Chr1:79388577-79388596 MsG0180004541.01.T01:intron 15.0%
!! ACAAAAGAACAAAAAATCAA+AGG - Chr1:79388635-79388654 None:intergenic 20.0%
!!! ATCAGTGTAATAAATAGTTT+TGG + Chr1:79388765-79388784 MsG0180004541.01.T01:intron 20.0%
!!! GATGTAATAGTTTTTTATGT+TGG + Chr1:79388825-79388844 MsG0180004541.01.T01:intron 20.0%
!!! TAATAGTTTTTTATGTTGGT+TGG + Chr1:79388829-79388848 MsG0180004541.01.T01:intron 20.0%
!!! TCAGTGTAATAAATAGTTTT+GGG + Chr1:79388766-79388785 MsG0180004541.01.T01:intron 20.0%
! AATGTTACCTTTGAATCATT+GGG - Chr1:79388479-79388498 None:intergenic 25.0%
! AGAAAATGCTAAAGTAAAAC+AGG - Chr1:79388267-79388286 None:intergenic 25.0%
! ATTGTATGCTAACTTGAAAT+TGG - Chr1:79389099-79389118 None:intergenic 25.0%
! TAAAGTAAAACAGGAATGAA+GGG - Chr1:79388258-79388277 None:intergenic 25.0%
! TAATGTTACCTTTGAATCAT+TGG - Chr1:79388480-79388499 None:intergenic 25.0%
! TAGATAAAATTTGATGCAGA+TGG + Chr1:79389043-79389062 MsG0180004541.01.T01:intron 25.0%
! TTAGACTTTGTCAATGTTTA+GGG + Chr1:79388876-79388895 MsG0180004541.01.T01:intron 25.0%
!! CTTTTGATGTTATTGTTGAT+CGG + Chr1:79389216-79389235 MsG0180004541.01.T01:CDS 25.0%
!! TTTTGATGTTATTGTTGATC+GGG + Chr1:79389217-79389236 MsG0180004541.01.T01:CDS 25.0%
!!! TTTCTCTAAATTAATGGGTT+TGG + Chr1:79388925-79388944 MsG0180004541.01.T01:intron 25.0%
AAATGCTTCTTCTTTCTTGA+TGG + Chr1:79388355-79388374 MsG0180004541.01.T01:five_prime_UTR 30.0%
AATCAGAAACTAGCTACAAA+AGG - Chr1:79388983-79389002 None:intergenic 30.0%
ACAGAGAAATGCTCATTATT+TGG - Chr1:79389994-79390013 None:intergenic 30.0%
ACTCAACAAAATCAATCCAA+TGG + Chr1:79388433-79388452 MsG0180004541.01.T01:exon 30.0%
ATAAAATTTGATGCAGATGG+TGG + Chr1:79389046-79389065 MsG0180004541.01.T01:intron 30.0%
ATACTATACTATGTTGCTGT+TGG + Chr1:79388535-79388554 MsG0180004541.01.T01:intron 30.0%
ATGTTACCTTTGAATCATTG+GGG - Chr1:79388478-79388497 None:intergenic 30.0%
CAAAAAATCAAAGGCGAAAA+AGG - Chr1:79388626-79388645 None:intergenic 30.0%
CTAAAGTAAAACAGGAATGA+AGG - Chr1:79388259-79388278 None:intergenic 30.0%
CTTAGACTTTGTCAATGTTT+AGG + Chr1:79388875-79388894 MsG0180004541.01.T01:intron 30.0%
GGAAAGAAATAAACATCGTA+CGG - Chr1:79388605-79388624 None:intergenic 30.0%
! ACAAAGTCTAAGATAGAAAC+AGG - Chr1:79388867-79388886 None:intergenic 30.0%
! ATGTTTAGGGTTTGGTTATT+TGG + Chr1:79388889-79388908 MsG0180004541.01.T01:intron 30.0%
! TGATTTTGTTGAGTGTAGAT+CGG - Chr1:79388427-79388446 None:intergenic 30.0%
!! GTTTAGTCTTTTTCTTTCGT+TGG + Chr1:79388653-79388672 MsG0180004541.01.T01:intron 30.0%
!!! AGTTTTTTATGTTGGTTGGT+TGG + Chr1:79388833-79388852 MsG0180004541.01.T01:intron 30.0%
AACAAAATCAATCCAATGGC+TGG + Chr1:79388437-79388456 MsG0180004541.01.T01:exon 35.0%
AAGGTTCATATCTACATGGT+TGG + Chr1:79389563-79389582 MsG0180004541.01.T01:CDS 35.0%
ATACTGCTAAACCCTTTGTT+TGG + Chr1:79389662-79389681 MsG0180004541.01.T01:CDS 35.0%
ATCAAAACCCACATGTTCAA+TGG - Chr1:79389074-79389093 None:intergenic 35.0%
GCAGAGTAAAAAAGATAGCA+AGG + Chr1:79389544-79389563 MsG0180004541.01.T01:CDS 35.0%
TAGCAAGGTTCATATCTACA+TGG + Chr1:79389559-79389578 MsG0180004541.01.T01:CDS 35.0%
TGAAAGATAGAGACTGGTAT+TGG + Chr1:79389741-79389760 MsG0180004541.01.T01:CDS 35.0%
TGAGTGTAGATCGGTAAAAA+AGG - Chr1:79388418-79388437 None:intergenic 35.0%
! CTTTGTCAATGTTTAGGGTT+TGG + Chr1:79388881-79388900 MsG0180004541.01.T01:intron 35.0%
! TAGGGTTTGGTTATTTGGTT+TGG + Chr1:79388894-79388913 MsG0180004541.01.T01:intron 35.0%
! TGGAAGTTTTGCACATTCTT+CGG + Chr1:79389361-79389380 MsG0180004541.01.T01:CDS 35.0%
!! AATGGGTTAACTCTAGAACT+TGG + Chr1:79389519-79389538 MsG0180004541.01.T01:CDS 35.0%
!! AGAAGCATTTGAAGATCCAA+AGG - Chr1:79388345-79388364 None:intergenic 35.0%
!! GTCTTTTTCTTTCGTTGGTT+TGG + Chr1:79388658-79388677 MsG0180004541.01.T01:intron 35.0%
!!! TTTTCTTTCGTTGGTTTGGT+TGG + Chr1:79388662-79388681 MsG0180004541.01.T01:intron 35.0%
AAAGAGAAAACACCATCCAC+AGG - Chr1:79389200-79389219 None:intergenic 40.0%
ACAGGAATGAAGGGAAAGAA+TGG - Chr1:79388249-79388268 None:intergenic 40.0%
ACTCAACCCCAATGATTCAA+AGG + Chr1:79388469-79388488 MsG0180004541.01.T01:CDS 40.0%
ACTTGGCAGAGTTTCTTGAT+CGG + Chr1:79389153-79389172 MsG0180004541.01.T01:CDS 40.0%
AGCAGTATATTTCCCAACAC+CGG - Chr1:79389650-79389669 None:intergenic 40.0%
ATCCTTGCGCTTATGAAGAT+GGG + Chr1:79389483-79389502 MsG0180004541.01.T01:CDS 40.0%
ATGGGTGGAAAGCTGTTAAA+TGG + Chr1:79389501-79389520 MsG0180004541.01.T01:CDS 40.0%
CCAATGCTTTCAATGCAACA+TGG - Chr1:79389616-79389635 None:intergenic 40.0%
GAAGATCCAAAGGTGAATGA+AGG - Chr1:79388335-79388354 None:intergenic 40.0%
GAGTGGTGAAGGATAAGAAA+AGG - Chr1:79388300-79388319 None:intergenic 40.0%
GTAGATTCGAGTAAGGAGAT+TGG - Chr1:79389246-79389265 None:intergenic 40.0%
GTTTGGATCTTGTTCAGGAT+TGG + Chr1:79389878-79389897 MsG0180004541.01.T01:intron 40.0%
TATCCTTGCGCTTATGAAGA+TGG + Chr1:79389482-79389501 MsG0180004541.01.T01:CDS 40.0%
TCAGAGTGAAAGATAGAGAC+TGG + Chr1:79389735-79389754 MsG0180004541.01.T01:CDS 40.0%
TGAGCATTTCTCTGTTGTCA+TGG + Chr1:79389999-79390018 MsG0180004541.01.T01:CDS 40.0%
TGATACATTGTGTCGTCGAT+TGG + Chr1:79389400-79389419 MsG0180004541.01.T01:CDS 40.0%
TGGGTGGAAAGCTGTTAAAT+GGG + Chr1:79389502-79389521 MsG0180004541.01.T01:CDS 40.0%
TGTCAACTCTGACTGTTCAT+AGG + Chr1:79390038-79390057 MsG0180004541.01.T01:CDS 40.0%
TTGAATCATTGGGGTTGAGT+TGG - Chr1:79388469-79388488 None:intergenic 40.0%
TTGTAATGCTGTTGTCGTCT+CGG + Chr1:79389430-79389449 MsG0180004541.01.T01:CDS 40.0%
TTGTCGTCTCGGTGAATTAT+AGG + Chr1:79389441-79389460 MsG0180004541.01.T01:CDS 40.0%
! CCATGTTGCATTGAAAGCAT+TGG + Chr1:79389613-79389632 MsG0180004541.01.T01:CDS 40.0%
! CTTGTTCAGGATTGGCAATT+GGG + Chr1:79389886-79389905 MsG0180004541.01.T01:intron 40.0%
! TCTTGTTCAGGATTGGCAAT+TGG + Chr1:79389885-79389904 MsG0180004541.01.T01:intron 40.0%
! TGTAACCCTTTTGGTCCAAA+AGG + Chr1:79389805-79389824 MsG0180004541.01.T01:intron 40.0%
! TTCGACCTTTTGGACCAAAA+GGG - Chr1:79389813-79389832 None:intergenic 40.0%
!! AATCCGAAAAGCGTCTTGAT+GGG + Chr1:79389702-79389721 MsG0180004541.01.T01:CDS 40.0%
!! CATTGAAAGCATTGGACTCT+GGG + Chr1:79389621-79389640 MsG0180004541.01.T01:CDS 40.0%
AAAAGGTCGAAGCCTTGATG+GGG + Chr1:79389822-79389841 MsG0180004541.01.T01:intron 45.0%
AATGTGCAAAACTTCCACCG+TGG - Chr1:79389358-79389377 None:intergenic 45.0%
AGTTGGTTACTTCCAGCCAT+TGG - Chr1:79388452-79388471 None:intergenic 45.0%
ATGATCTCTGTCTTCCCTTC+AGG - Chr1:79389779-79389798 None:intergenic 45.0%
CAAAAGGTCGAAGCCTTGAT+GGG + Chr1:79389821-79389840 MsG0180004541.01.T01:intron 45.0%
CAAGAAACTCTGCCAAGTCA+CGG - Chr1:79389151-79389170 None:intergenic 45.0%
CACCACAAGACTCTTAGGAA+AGG - Chr1:79389851-79389870 None:intergenic 45.0%
CCTGTTGTCATGTTCTTCCA+CGG + Chr1:79389338-79389357 MsG0180004541.01.T01:CDS 45.0%
GATCCAAAGGTGAATGAAGG+AGG - Chr1:79388332-79388351 None:intergenic 45.0%
GGTGGTTCCATTGAACATGT+GGG + Chr1:79389064-79389083 MsG0180004541.01.T01:CDS 45.0%
TAGCAAGTAAAACCCAACCG+TGG - Chr1:79389971-79389990 None:intergenic 45.0%
TCACGGTTGAAAGTTCCATC+AGG - Chr1:79389134-79389153 None:intergenic 45.0%
TCCAGCTTTCTCAAGTCCTT+TGG - Chr1:79389917-79389936 None:intergenic 45.0%
TCTCCTCCTTCATTCACCTT+TGG + Chr1:79388326-79388345 MsG0180004541.01.T01:five_prime_UTR 45.0%
TGAAAGTTCCATCAGGACGA+CGG - Chr1:79389127-79389146 None:intergenic 45.0%
TGCCTTTCCTAAGAGTCTTG+TGG + Chr1:79389846-79389865 MsG0180004541.01.T01:intron 45.0%
TGGAACTTTCAACCGTGACT+TGG + Chr1:79389136-79389155 MsG0180004541.01.T01:CDS 45.0%
TGGCAATTGGGATATGCCAA+AGG + Chr1:79389898-79389917 MsG0180004541.01.T01:CDS 45.0%
TGGTGGTTCCATTGAACATG+TGG + Chr1:79389063-79389082 MsG0180004541.01.T01:CDS 45.0%
TGTTGTTCTTCTCCCTCAAC+AGG - Chr1:79389272-79389291 None:intergenic 45.0%
TTTCTTCCCCGCCAAACAAA+GGG - Chr1:79389676-79389695 None:intergenic 45.0%
! ACATTGTGTCGTCGATTGGT+TGG + Chr1:79389404-79389423 MsG0180004541.01.T01:CDS 45.0%
! CTGCTAAACCCTTTGTTTGG+CGG + Chr1:79389665-79389684 MsG0180004541.01.T01:CDS 45.0%
! CTTCGACCTTTTGGACCAAA+AGG - Chr1:79389814-79389833 None:intergenic 45.0%
! CTTTCCTAAGAGTCTTGTGG+TGG + Chr1:79389849-79389868 MsG0180004541.01.T01:intron 45.0%
! GCGCAAGGATACCTATTTTC+AGG - Chr1:79389473-79389492 None:intergenic 45.0%
! GGAGAGCTTTTCTTCCTGAA+GGG + Chr1:79389762-79389781 MsG0180004541.01.T01:CDS 45.0%
! TCTCCCATCAAGACGCTTTT+CGG - Chr1:79389708-79389727 None:intergenic 45.0%
! TGCTAAACCCTTTGTTTGGC+GGG + Chr1:79389666-79389685 MsG0180004541.01.T01:CDS 45.0%
! TGGAGAGCTTTTCTTCCTGA+AGG + Chr1:79389761-79389780 MsG0180004541.01.T01:CDS 45.0%
!! CTACATGGTTGGTGATAGCT+CGG + Chr1:79389574-79389593 MsG0180004541.01.T01:CDS 45.0%
!! GAATCCGAAAAGCGTCTTGA+TGG + Chr1:79389701-79389720 MsG0180004541.01.T01:CDS 45.0%
!! GCATTGAAAGCATTGGACTC+TGG + Chr1:79389620-79389639 MsG0180004541.01.T01:CDS 45.0%
!! TACATGGTTGGTGATAGCTC+GGG + Chr1:79389575-79389594 MsG0180004541.01.T01:CDS 45.0%
!! TGCTGGTTTGGATCTTGTTC+AGG + Chr1:79389873-79389892 MsG0180004541.01.T01:intron 45.0%
AATCTTCTCCGTCGTCCTGA+TGG + Chr1:79389116-79389135 MsG0180004541.01.T01:CDS 50.0%
ATAGGCGTGCGCCTGAAAAT+AGG + Chr1:79389459-79389478 MsG0180004541.01.T01:CDS 50.0%
CACCCATCTTCATAAGCGCA+AGG - Chr1:79389488-79389507 None:intergenic 50.0%
CAGCAGTAACAGGCTTCTCA+AGG - Chr1:79389310-79389329 None:intergenic 50.0%
CAGGACGGTAGATTCGAGTA+AGG - Chr1:79389253-79389272 None:intergenic 50.0%
CCAAAAGGTCGAAGCCTTGA+TGG + Chr1:79389820-79389839 MsG0180004541.01.T01:intron 50.0%
CCGTGGAAGAACATGACAAC+AGG - Chr1:79389341-79389360 None:intergenic 50.0%
CGAATCTACCGTCCTGTTGA+GGG + Chr1:79389257-79389276 MsG0180004541.01.T01:CDS 50.0%
CTTGCGCTTATGAAGATGGG+TGG + Chr1:79389486-79389505 MsG0180004541.01.T01:CDS 50.0%
CTTTCTTCCCCGCCAAACAA+AGG - Chr1:79389677-79389696 None:intergenic 50.0%
GAAGGAGGAGAAGAGAAGAG+TGG - Chr1:79388317-79388336 None:intergenic 50.0%
GCAAATGCGAATCCTGTGGA+TGG + Chr1:79389185-79389204 MsG0180004541.01.T01:CDS 50.0%
GCAACCACCACAAGACTCTT+AGG - Chr1:79389856-79389875 None:intergenic 50.0%
GCCAAAGGACTTGAGAAAGC+TGG + Chr1:79389913-79389932 MsG0180004541.01.T01:CDS 50.0%
GGAAGAACCTCAGCAGTAAC+AGG - Chr1:79389320-79389339 None:intergenic 50.0%
GGAGAAGAGAAGAGTGGTGA+AGG - Chr1:79388311-79388330 None:intergenic 50.0%
GTTCTTCTCCCTCAACAGGA+CGG - Chr1:79389268-79389287 None:intergenic 50.0%
GTTGTCATGTTCTTCCACGG+TGG + Chr1:79389341-79389360 MsG0180004541.01.T01:CDS 50.0%
TAGGAAAGGCAACCCCATCA+AGG - Chr1:79389837-79389856 None:intergenic 50.0%
TCCACAGGATTCGCATTTGC+TGG - Chr1:79389185-79389204 None:intergenic 50.0%
TCCAGCAAATGCGAATCCTG+TGG + Chr1:79389181-79389200 MsG0180004541.01.T01:CDS 50.0%
TCGAATCTACCGTCCTGTTG+AGG + Chr1:79389256-79389275 MsG0180004541.01.T01:CDS 50.0%
TGAGAAGCCTGTTACTGCTG+AGG + Chr1:79389310-79389329 MsG0180004541.01.T01:CDS 50.0%
! AAGAGTCTTGTGGTGGTTGC+TGG + Chr1:79389856-79389875 MsG0180004541.01.T01:intron 50.0%
! CATCACGCGTGTAACCCTTT+TGG + Chr1:79389796-79389815 MsG0180004541.01.T01:intron 50.0%
! CCATCAAGGCTTCGACCTTT+TGG - Chr1:79389823-79389842 None:intergenic 50.0%
! GCTAAACCCTTTGTTTGGCG+GGG + Chr1:79389667-79389686 MsG0180004541.01.T01:CDS 50.0%
! TCTTGTGGTGGTTGCTGGTT+TGG + Chr1:79389861-79389880 MsG0180004541.01.T01:intron 50.0%
!! AGCATTGGACTCTGGGATTC+CGG + Chr1:79389628-79389647 MsG0180004541.01.T01:CDS 50.0%
!! GCTATTTCTCGAGCAAGCCA+CGG + Chr1:79389951-79389970 MsG0180004541.01.T01:CDS 50.0%
TTCTCGAGCAAGCCACGGTT+GGG + Chr1:79389956-79389975 MsG0180004541.01.T01:CDS 55.0%
TTTCTCGAGCAAGCCACGGT+TGG + Chr1:79389955-79389974 MsG0180004541.01.T01:CDS 55.0%
!! ATGGTTGGTGATAGCTCGGG+CGG + Chr1:79389578-79389597 MsG0180004541.01.T01:CDS 55.0%
!! GACTCTGGGATTCCGGTGTT+GGG + Chr1:79389635-79389654 MsG0180004541.01.T01:CDS 55.0%
!! GGACTCTGGGATTCCGGTGT+TGG + Chr1:79389634-79389653 MsG0180004541.01.T01:CDS 60.0%
!! TGGTTGGTGATAGCTCGGGC+GGG + Chr1:79389579-79389598 MsG0180004541.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 79388233 79390059 79388233 ID=MsG0180004541.01;Name=MsG0180004541.01
Chr1 mRNA 79388233 79390059 79388233 ID=MsG0180004541.01.T01;Parent=MsG0180004541.01;Name=MsG0180004541.01.T01;_AED=0.34;_eAED=0.34;_QI=219|0.5|0.33|1|0.5|0.33|3|0|315
Chr1 exon 79388233 79388490 79388233 ID=MsG0180004541.01.T01:exon:45602;Parent=MsG0180004541.01.T01
Chr1 exon 79389062 79389805 79389062 ID=MsG0180004541.01.T01:exon:45603;Parent=MsG0180004541.01.T01
Chr1 exon 79389895 79390059 79389895 ID=MsG0180004541.01.T01:exon:45604;Parent=MsG0180004541.01.T01
Chr1 five_prime_UTR 79388233 79388451 79388233 ID=MsG0180004541.01.T01:five_prime_utr;Parent=MsG0180004541.01.T01
Chr1 CDS 79388452 79388490 79388452 ID=MsG0180004541.01.T01:cds;Parent=MsG0180004541.01.T01
Chr1 CDS 79389062 79389805 79389062 ID=MsG0180004541.01.T01:cds;Parent=MsG0180004541.01.T01
Chr1 CDS 79389895 79390059 79389895 ID=MsG0180004541.01.T01:cds;Parent=MsG0180004541.01.T01
Gene Sequence

>MsG0180004541.01.T01

ATGGCTGGAAGTAACCAACTCAACCCCAATGATTCAAAGATGGTGGTTCCATTGAACATGTGGGTTTTGATCTCCAATTTCAAGTTAGCATACAATCTTCTCCGTCGTCCTGATGGAACTTTCAACCGTGACTTGGCAGAGTTTCTTGATCGGAAAGTTCCAGCAAATGCGAATCCTGTGGATGGTGTTTTCTCTTTTGATGTTATTGTTGATCGGGAAACCAATCTCCTTACTCGAATCTACCGTCCTGTTGAGGGAGAAGAACAACATGTGAACATTGTTGACCTTGAGAAGCCTGTTACTGCTGAGGTTCTTCCTGTTGTCATGTTCTTCCACGGTGGAAGTTTTGCACATTCTTCGGCTAACAGTGCTATTTATGATACATTGTGTCGTCGATTGGTTGGTATTTGTAATGCTGTTGTCGTCTCGGTGAATTATAGGCGTGCGCCTGAAAATAGGTATCCTTGCGCTTATGAAGATGGGTGGAAAGCTGTTAAATGGGTTAACTCTAGAACTTGGCTGCAGAGTAAAAAAGATAGCAAGGTTCATATCTACATGGTTGGTGATAGCTCGGGCGGGAACATTGTGCACCATGTTGCATTGAAAGCATTGGACTCTGGGATTCCGGTGTTGGGAAATATACTGCTAAACCCTTTGTTTGGCGGGGAAGAAAGAACAGAATCCGAAAAGCGTCTTGATGGGAGATATTTTGTCAGAGTGAAAGATAGAGACTGGTATTGGAGAGCTTTTCTTCCTGAAGGGAAGACAGAGATCATCACGCGTGATTGGCAATTGGGATATGCCAAAGGACTTGAGAAAGCTGGACAAAATGTGAAGTTGCTATTTCTCGAGCAAGCCACGGTTGGGTTTTACTTGCTACCAAATAATGAGCATTTCTCTGTTGTCATGGATGAGATAAAACATTTTGTCAACTCTGACTGTTCATAG

Protein sequence

>MsG0180004541.01.T01

MAGSNQLNPNDSKMVVPLNMWVLISNFKLAYNLLRRPDGTFNRDLAEFLDRKVPANANPVDGVFSFDVIVDRETNLLTRIYRPVEGEEQHVNIVDLEKPVTAEVLPVVMFFHGGSFAHSSANSAIYDTLCRRLVGICNAVVVSVNYRRAPENRYPCAYEDGWKAVKWVNSRTWLQSKKDSKVHIYMVGDSSGGNIVHHVALKALDSGIPVLGNILLNPLFGGEERTESEKRLDGRYFVRVKDRDWYWRAFLPEGKTEIITRDWQLGYAKGLEKAGQNVKLLFLEQATVGFYLLPNNEHFSVVMDEIKHFVNSDCS*