AlfalfaGEDB | MsG0780039435.01

M. sativa cultivar ZhongmuNo.1 / MsG0780039435.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039435.01.T01	XP_013449251.1	89.286	392	26	2	1	376	1	392	0	635

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039435.01.T01	A0A072U258	89.286	392	26	2	1	376	1	392	0.0	635

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048464.01	MsG0780039435.01	0.811952	5.412581e-51	3.396396e-48
MsG0080048748.01	MsG0780039435.01	0.832783	7.761505e-56	8.764925e-53
MsG0080048845.01	MsG0780039435.01	0.809063	2.277461e-50	1.323817e-47
MsG0080048849.01	MsG0780039435.01	0.812147	4.907060e-51	3.095674e-48
MsG0080048938.01	MsG0780039435.01	0.875089	4.056687e-68	1.870514e-64
MsG0180000114.01	MsG0780039435.01	0.810154	1.327108e-50	7.940196e-48
MsG0180000246.01	MsG0780039435.01	0.854353	1.302375e-61	2.900360e-58
MsG0180000482.01	MsG0780039435.01	0.801287	9.670505e-49	4.600719e-46
MsG0180000599.01	MsG0780039435.01	0.841820	3.768681e-58	5.603708e-55
MsG0180000646.01	MsG0780039435.01	0.818349	2.053793e-52	1.533644e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039435.01.T01	MTR_7g073510	89.286	392	26	2	1	376	1	392	0.0	635

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039435.01.T01	AT2G38570	49.466	281	97	6	72	335	46	298	4.29e-67	215
MsG0780039435.01.T01	AT2G38570	48.472	229	74	5	72	283	46	247	1.99e-52	175

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Find 127 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAATTGGGTTGAAT+TGG	0.329798	7:+64067103	None:intergenic
AAACATATGGTCGTGTTTCA+AGG	0.443146	7:-64061868	MsG0780039435.01.T01:CDS
AAAGGAAATTGGGTTGAATT+GGG	0.386654	7:+64067104	None:intergenic
AAATCCGGGTCCACCATCAA+GGG	0.574141	7:-64067004	MsG0780039435.01.T01:CDS
AAGCTATGACCCCTTGATGG+TGG	0.616395	7:+64066994	None:intergenic
AATAGATGAAAATGATGATA+AGG	0.400233	7:-64066872	MsG0780039435.01.T01:CDS
AATCCGGGTCCACCATCAAG+GGG	0.669027	7:-64067003	MsG0780039435.01.T01:CDS
AATCTTGACTCTTAGGTGCG+TGG	0.613376	7:-64063649	MsG0780039435.01.T01:intron
AATTGGGTTGAATTGGGTTC+TGG	0.336463	7:+64067110	None:intergenic
AATTTCGGGTTAGAGTTGGA+GGG	0.631424	7:-64066934	MsG0780039435.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTCATTGAGCAATTAAAC+TGG	-	Chr7:64064308-64064327	MsG0780039435.01.T01:intron	30.0%
AATCATATTCCAGAATGAAC+AGG	+	Chr7:64066564-64066583	None:intergenic	30.0%
ACAAACAAAAGAAATGTTGG+TGG	-	Chr7:64064494-64064513	MsG0780039435.01.T01:intron	30.0%
ACATTTATTCATCGTGGAAT+AGG	+	Chr7:64067249-64067268	None:intergenic	30.0%
AGGAGTTCATTCATATAGTT+TGG	-	Chr7:64063028-64063047	MsG0780039435.01.T01:intron	30.0%
ATAATTTCAAGCTACCTAAC+AGG	+	Chr7:64064264-64064283	None:intergenic	30.0%
ATAGCTATAACTATCCGAAA+AGG	+	Chr7:64063640-64063659	None:intergenic	30.0%
ATCATATTCCAGAATGAACA+GGG	+	Chr7:64066563-64066582	None:intergenic	30.0%
ATTCAATCTGCTCTTAGTTT+GGG	-	Chr7:64062006-64062025	MsG0780039435.01.T01:intron	30.0%
ATTCCACGATGAATAAATGT+TGG	-	Chr7:64067249-64067268	MsG0780039435.01.T01:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	64061381	64067305	64061381	ID=MsG0780039435.01;Name=MsG0780039435.01
Chr7	mRNA	64061381	64067305	64061381	ID=MsG0780039435.01.T01;Parent=MsG0780039435.01;Name=MsG0780039435.01.T01;_AED=0.39;_eAED=0.39;_QI=82\|0.83\|1\|1\|0.83\|0.71\|7\|371\|376
Chr7	exon	64066624	64067305	64066624	ID=MsG0780039435.01.T01:exon:15827;Parent=MsG0780039435.01.T01
Chr7	exon	64066433	64066513	64066433	ID=MsG0780039435.01.T01:exon:15828;Parent=MsG0780039435.01.T01
Chr7	exon	64065708	64065782	64065708	ID=MsG0780039435.01.T01:exon:15829;Parent=MsG0780039435.01.T01
Chr7	exon	64063567	64063656	64063567	ID=MsG0780039435.01.T01:exon:15830;Parent=MsG0780039435.01.T01
Chr7	exon	64062820	64062921	64062820	ID=MsG0780039435.01.T01:exon:15831;Parent=MsG0780039435.01.T01
Chr7	exon	64061619	64061960	64061619	ID=MsG0780039435.01.T01:exon:15832;Parent=MsG0780039435.01.T01
Chr7	exon	64061381	64061592	64061381	ID=MsG0780039435.01.T01:exon:15833;Parent=MsG0780039435.01.T01
Chr7	five_prime_UTR	64067224	64067305	64067224	ID=MsG0780039435.01.T01:five_prime_utr;Parent=MsG0780039435.01.T01
Chr7	CDS	64066624	64067223	64066624	ID=MsG0780039435.01.T01:cds;Parent=MsG0780039435.01.T01
Chr7	CDS	64066433	64066513	64066433	ID=MsG0780039435.01.T01:cds;Parent=MsG0780039435.01.T01
Chr7	CDS	64065708	64065782	64065708	ID=MsG0780039435.01.T01:cds;Parent=MsG0780039435.01.T01
Chr7	CDS	64063567	64063656	64063567	ID=MsG0780039435.01.T01:cds;Parent=MsG0780039435.01.T01
Chr7	CDS	64062820	64062921	64062820	ID=MsG0780039435.01.T01:cds;Parent=MsG0780039435.01.T01
Chr7	CDS	64061778	64061960	64061778	ID=MsG0780039435.01.T01:cds;Parent=MsG0780039435.01.T01
Chr7	three_prime_UTR	64061619	64061777	64061619	ID=MsG0780039435.01.T01:three_prime_utr;Parent=MsG0780039435.01.T01
Chr7	three_prime_UTR	64061381	64061592	64061381	ID=MsG0780039435.01.T01:three_prime_utr;Parent=MsG0780039435.01.T01

Gene Sequence

>MsG0780039435.01.T01

ATGACTGATTTTCTCGCTATAAACCCACTTTCCATTTCAGCTGCAGAATCTCCATTGTTCCCCTTTCTCAATTCATACACAACCTCATCAACCAGAACCCAATTCAACCCAATTTCCTTTTCCCCCTTTTCACCCAAACTCTCCAAAACCAGTGGCAACAACAGTGTTTCCGCAGCGTTGAGCTCAAGGTCCAATGGAAATCCGGGTCCACCATCAAGGGGTCATAGCTTTTACAACGAACTTCAATTTGAGGACTCAAAGGAGAACAATTTCGGGTTAGAGTTGGAGGGTTTGTCCAATGAAACTGATGGGTCTAACTCATTTGCTGAAATAGATGAAAATGATGATAAGGGAAGTGGAAAGAGTGTGAATGAATTGGGAGAGGATGATTTGATTCGGGTTCGTGGCGATGGAGATGGAAATGATGATGGGGTTGATTTGAGAAAAGATGATAAAGTTGAGAAATTTGGCGGTAATTTGAGATTAAGAAGAGGTAAACAAGTGATTAGAAGGTCGAATTTGTTGGCGAAGCAGGTGATTAGTATTCAATCTGCTCTTAGTTTGGGATTTGTCTCACAGCTTTGGGTGGACACTACCTCTTGGATGGTCTTGTTTGTAGAGGTGAGATCAAATTTGCTTTCTGGGGATTCAGAAAAATTCCTTCTTGAGGATATCAGTCAGGTTGGGGATGTTGTCCTTGTTCCGGATGAAAGTGTTATAGACAACGAATATAATATGATTGGATTGGAGACTCTGGTGCGTGGATACAATTTCAGCATCAATTCAGGTGCTGTTGAAGAACTTGAGATAGACTCATTTGGATTATCCATCATTCCATCAAGTTTGGTGAGTACCTACTCTTTGATGGTTGAGGATGTACTTGAAGTAGTATCTGATGCTGTTGTTGTACATGAAGCTGCAGCTTTACGAATACAAAGGCTTTCCAAGGGCTTTTTGGGCAACCAGAATGTGGGAATCTCGGTGGATGATGTCGAAGATTATGAATCTGAACAATCTGAAACATATGGTCGTGTTTCAAGGAGAAGGAAAGGTTTTGGAAGAAAGAAACCCAATCCAAGAGAGTGGGATAATAATGAAGATAACTGGGAGCTTCCTATGGATTACCTCTAA

Protein sequence

>MsG0780039435.01.T01

MTDFLAINPLSISAAESPLFPFLNSYTTSSTRTQFNPISFSPFSPKLSKTSGNNSVSAALSSRSNGNPGPPSRGHSFYNELQFEDSKENNFGLELEGLSNETDGSNSFAEIDENDDKGSGKSVNELGEDDLIRVRGDGDGNDDGVDLRKDDKVEKFGGNLRLRRGKQVIRRSNLLAKQVISIQSALSLGFVSQLWVDTTSWMVLFVEVRSNLLSGDSEKFLLEDISQVGDVVLVPDESVIDNEYNMIGLETLVRGYNFSINSGAVEELEIDSFGLSIIPSSLVSTYSLMVEDVLEVVSDAVVVHEAAALRIQRLSKGFLGNQNVGISVDDVEDYESEQSETYGRVSRRRKGFGRKKPNPREWDNNEDNWELPMDYL*