AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047052.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047052.01.T01 MTR_4g119920 100.000 31 0 0 85 115 534 564 2.30e-14 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 49 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAAGTTCTAGGGATTATT+TGG 0.119169 8:+81364923 MsG0880047052.01.T01:three_prime_UTR
ACTTTGTGCACTGTAAATTT+TGG 0.179732 8:+81364973 MsG0880047052.01.T01:three_prime_UTR
TTCTCAATACCATCAATTTC+AGG 0.186057 8:-81362738 None:intergenic
CATCGTCATGTCACCAATTA+TGG 0.260048 8:-81364638 None:intergenic
AGATCAAAATGTGCCATAAT+TGG 0.271589 8:+81364625 MsG0880047052.01.T01:exon
TTATTGGAGAAGCAGGTAAA+AGG 0.279098 8:+81362694 MsG0880047052.01.T01:CDS
CATGATCTTATAGAAGTTCT+AGG 0.286352 8:+81364913 MsG0880047052.01.T01:three_prime_UTR
ACCGCCATTCCAACCAAAAT+TGG 0.306725 8:+81364667 MsG0880047052.01.T01:three_prime_UTR
AGAAGTTCTAGGGATTATTT+GGG 0.307284 8:+81364924 MsG0880047052.01.T01:three_prime_UTR
TACATGTTTAGGTGGTTTCC+CGG 0.371542 8:+81363524 MsG0880047052.01.T01:intron
AAAGGGAAGAGGAAGAGAAT+GGG 0.392942 8:+81362712 MsG0880047052.01.T01:CDS
AATTGAGTTATTGGAGAAGC+AGG 0.395958 8:+81362687 MsG0880047052.01.T01:intron
TATTGGAGAAGCAGGTAAAA+GGG 0.413134 8:+81362695 MsG0880047052.01.T01:CDS
GTTTGTTGAAGCTGAAGAAT+AGG 0.422799 8:+81362775 MsG0880047052.01.T01:CDS
AAAAGGGAAGAGGAAGAGAA+TGG 0.434209 8:+81362711 MsG0880047052.01.T01:CDS
AGTTGCAACATCTCCTATCA+AGG 0.464582 8:+81364862 MsG0880047052.01.T01:three_prime_UTR
AGACAGCTTCAACTTTATGC+TGG 0.464632 8:+81364554 MsG0880047052.01.T01:CDS
GGTTTCCCGGAGACTAGTAT+TGG 0.470982 8:+81363537 MsG0880047052.01.T01:CDS
GATGGTATTGAGAAAGAGAT+TGG 0.471989 8:+81362747 MsG0880047052.01.T01:CDS
ATTTGGGGTAGGTAATATGT+AGG 0.474482 8:+81364940 MsG0880047052.01.T01:three_prime_UTR
GTTTCCCGGAGACTAGTATT+GGG 0.475666 8:+81363538 MsG0880047052.01.T01:CDS
GCGTGGACATGTCCCTTGAT+AGG 0.476564 8:-81364875 None:intergenic
GATGAGACTGGCGAATTTGA+AGG 0.485316 8:+81362382 MsG0880047052.01.T01:CDS
TACTACTACTGACTGAACTT+TGG 0.485866 8:+81364785 MsG0880047052.01.T01:three_prime_UTR
ACTGACTGAACTTTGGTGGC+AGG 0.492662 8:+81364792 MsG0880047052.01.T01:three_prime_UTR
AGAAGCAGGTAAAAGGGAAG+AGG 0.496536 8:+81362701 MsG0880047052.01.T01:CDS
GACATCCCAATACTAGTCTC+CGG 0.497076 8:-81363543 None:intergenic
AAGCAGTCTTCACCTCTGTT+CGG 0.507774 8:-81364757 None:intergenic
ATGTCCACGCTGGTGTCATT+AGG 0.507907 8:+81364888 MsG0880047052.01.T01:three_prime_UTR
AATGGGGATCCTGAAATTGA+TGG 0.510509 8:+81362729 MsG0880047052.01.T01:CDS
TTTGGGGTAGGTAATATGTA+GGG 0.513875 8:+81364941 MsG0880047052.01.T01:three_prime_UTR
GACAGCTTCAACTTTATGCT+GGG 0.524397 8:+81364555 MsG0880047052.01.T01:CDS
TACTACTGACTGAACTTTGG+TGG 0.529646 8:+81364788 MsG0880047052.01.T01:three_prime_UTR
ATGATCTTATAGAAGTTCTA+GGG 0.536604 8:+81364914 MsG0880047052.01.T01:three_prime_UTR
GCTGGAGCTGTTGATGAGAC+TGG 0.544574 8:+81362370 MsG0880047052.01.T01:CDS
AAGGGAAGAGGAAGAGAATG+GGG 0.545194 8:+81362713 MsG0880047052.01.T01:CDS
ACATCCCAATACTAGTCTCC+GGG 0.554325 8:-81363542 None:intergenic
TTCTAGGGATTATTTGGGGT+AGG 0.586381 8:+81364929 MsG0880047052.01.T01:three_prime_UTR
GCTACTAACTGATGTTGAGA+TGG 0.601272 8:+81364580 MsG0880047052.01.T01:CDS
ATGCACGGAGAAGATATCGC+TGG 0.604763 8:+81362352 MsG0880047052.01.T01:CDS
TGAAGGATTACGAGTGTCCG+TGG 0.607470 8:+81362399 MsG0880047052.01.T01:CDS
TTGGGGTAGGTAATATGTAG+GGG 0.632584 8:+81364942 MsG0880047052.01.T01:three_prime_UTR
ATCAAGGGACATGTCCACGC+TGG 0.636595 8:+81364878 MsG0880047052.01.T01:three_prime_UTR
GTTGCAACATCTCCTATCAA+GGG 0.638907 8:+81364863 MsG0880047052.01.T01:three_prime_UTR
ACATATAAACTTTCAGAACA+AGG 0.639006 8:-81364832 None:intergenic
ATCCCCGCCGACGAAATGCA+CGG 0.651813 8:+81362337 None:intergenic
GACGCTGAACTTCCGAACAG+AGG 0.689376 8:+81364745 MsG0880047052.01.T01:three_prime_UTR
GAAGTTCTAGGGATTATTTG+GGG 0.724593 8:+81364925 MsG0880047052.01.T01:three_prime_UTR
TGTGCCTAATGACACCAGCG+TGG 0.731174 8:-81364892 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATATATTGGAATTA+TGG + Chr8:81363370-81363389 MsG0880047052.01.T01:intron 10.0%
!! CTAATATCAAAATCAAAAAT+TGG + Chr8:81364715-81364734 MsG0880047052.01.T01:three_prime_UTR 15.0%
!! AAATGAGGAAATTAAGTTAA+TGG + Chr8:81362648-81362667 MsG0880047052.01.T01:intron 20.0%
!! AATGAAGAAATAATATCTCA+TGG + Chr8:81364508-81364527 MsG0880047052.01.T01:intron 20.0%
!! GCTCGAAAATTATTATATAT+TGG + Chr8:81363362-81363381 MsG0880047052.01.T01:intron 20.0%
!!! AAATATTTTGAATTGCCTTT+TGG + Chr8:81363306-81363325 MsG0880047052.01.T01:intron 20.0%
!!! ATATAATAATTTTCGAGCAA+CGG - Chr8:81363360-81363379 None:intergenic 20.0%
!!! GAGTTATTTTTTACATGTTT+AGG + Chr8:81363513-81363532 MsG0880047052.01.T01:intron 20.0%
!!! TTATTTTTTACATGTTTAGG+TGG + Chr8:81363516-81363535 MsG0880047052.01.T01:intron 20.0%
! AAGTTAAACAAGCAAAATCT+AGG + Chr8:81363689-81363708 MsG0880047052.01.T01:intron 25.0%
! AATTAGTAGAAAGGAAAATG+AGG + Chr8:81362633-81362652 MsG0880047052.01.T01:intron 25.0%
! AATTTCAATTAACAAGTGCA+TGG - Chr8:81364389-81364408 None:intergenic 25.0%
! ACATATAAACTTTCAGAACA+AGG - Chr8:81364835-81364854 None:intergenic 25.0%
! AGCATACATAAAAAACCAAA+AGG - Chr8:81363324-81363343 None:intergenic 25.0%
! ATGATCTTATAGAAGTTCTA+GGG + Chr8:81364914-81364933 MsG0880047052.01.T01:three_prime_UTR 25.0%
! TAGTAGAAAACAAAAGTTGT+TGG - Chr8:81364223-81364242 None:intergenic 25.0%
!! AAATATACTCCTTTTAGACA+TGG - Chr8:81364471-81364490 None:intergenic 25.0%
!! ATTCTTACTTGTATTGACAT+GGG - Chr8:81364293-81364312 None:intergenic 25.0%
!! CTAAGGAGATTTTCAAATAA+CGG + Chr8:81362461-81362480 MsG0880047052.01.T01:intron 25.0%
!! TATTCTTACTTGTATTGACA+TGG - Chr8:81364294-81364313 None:intergenic 25.0%
!! TTGACTTTGTTGAAGTTTTA+AGG - Chr8:81363915-81363934 None:intergenic 25.0%
!!! AGAATCCTATTTTGAAGATT+TGG + Chr8:81364242-81364261 MsG0880047052.01.T01:intron 25.0%
!!! AGATTTTGCTTGTTTAACTT+TGG - Chr8:81363689-81363708 None:intergenic 25.0%
!!! GAATCCTATTTTGAAGATTT+GGG + Chr8:81364243-81364262 MsG0880047052.01.T01:intron 25.0%
!!! GTGTGTAATTTTTTTGGTAT+AGG + Chr8:81364445-81364464 MsG0880047052.01.T01:intron 25.0%
!!! TTTATGTATGCTGTTACTTT+TGG + Chr8:81363332-81363351 MsG0880047052.01.T01:intron 25.0%
AAAACAAAAGTTGTTGGCAT+CGG - Chr8:81364217-81364236 None:intergenic 30.0%
AAATACTAATTCCTCTTTCC+CGG - Chr8:81362884-81362903 None:intergenic 30.0%
AACACCAAATAGGAAAACAA+AGG + Chr8:81363183-81363202 MsG0880047052.01.T01:intron 30.0%
AACGGTGGTATTTATTTGAT+TGG + Chr8:81362479-81362498 MsG0880047052.01.T01:intron 30.0%
AAGAAGTAATTAGCGAAGAT+AGG + Chr8:81363463-81363482 MsG0880047052.01.T01:intron 30.0%
ACGGTGGTATTTATTTGATT+GGG + Chr8:81362480-81362499 MsG0880047052.01.T01:intron 30.0%
AGATCAAAATGTGCCATAAT+TGG + Chr8:81364625-81364644 MsG0880047052.01.T01:exon 30.0%
ATGGGAAATAGAACTATGTT+TGG + Chr8:81363999-81364018 MsG0880047052.01.T01:intron 30.0%
ATTTAAAAGCCCTTCAACTA+AGG + Chr8:81362917-81362936 MsG0880047052.01.T01:intron 30.0%
CAAAAAAATTACACACACAC+TGG - Chr8:81364441-81364460 None:intergenic 30.0%
CACAAAGAGATATGATTTCA+TGG - Chr8:81364072-81364091 None:intergenic 30.0%
CATGATCTTATAGAAGTTCT+AGG + Chr8:81364913-81364932 MsG0880047052.01.T01:three_prime_UTR 30.0%
GAAATCATATCTCTTTGTGA+AGG + Chr8:81364073-81364092 MsG0880047052.01.T01:intron 30.0%
GAATAGGATTAAGAGTAACA+AGG + Chr8:81362791-81362810 MsG0880047052.01.T01:intron 30.0%
TACAGCTAGAAAATTTCACA+AGG - Chr8:81363870-81363889 None:intergenic 30.0%
TAGTTTAAACTTCACCTCTA+AGG + Chr8:81364144-81364163 MsG0880047052.01.T01:intron 30.0%
TCAACAAAGTCAAATATCCT+AGG + Chr8:81363922-81363941 MsG0880047052.01.T01:intron 30.0%
TCGTATCAGTTATTGTCAAT+TGG + Chr8:81363271-81363290 MsG0880047052.01.T01:intron 30.0%
TGGATATGCTACTGAAAAAT+AGG - Chr8:81363778-81363797 None:intergenic 30.0%
TTCTCAATACCATCAATTTC+AGG - Chr8:81362741-81362760 None:intergenic 30.0%
TTTGTTTGCATTGGGTTTAT+GGG + Chr8:81363981-81364000 MsG0880047052.01.T01:intron 30.0%
! AAATGATGGAAACACCAAAT+AGG + Chr8:81363173-81363192 MsG0880047052.01.T01:intron 30.0%
! AACGAAGAAGTAGTATTTTC+GGG - Chr8:81363827-81363846 None:intergenic 30.0%
! ACTTTGTGCACTGTAAATTT+TGG + Chr8:81364973-81364992 MsG0880047052.01.T01:three_prime_UTR 30.0%
! ATTATCCTTTTCAAAACCCT+GGG - Chr8:81363603-81363622 None:intergenic 30.0%
! CAAAATCTAGGACTGATATT+TGG + Chr8:81363701-81363720 MsG0880047052.01.T01:intron 30.0%
! CAACGAAGAAGTAGTATTTT+CGG - Chr8:81363828-81363847 None:intergenic 30.0%
! GAAAAGAGGAACATTTTGTT+TGG + Chr8:81362584-81362603 MsG0880047052.01.T01:intron 30.0%
! GATTTTCCTTTTTCTTCCAA+TGG - Chr8:81363103-81363122 None:intergenic 30.0%
! TTCACAAGGTTCTTTAAGAA+AGG - Chr8:81363856-81363875 None:intergenic 30.0%
! TTTTCACTGTCTACCAATTT+TGG - Chr8:81364683-81364702 None:intergenic 30.0%
!! AGAAGTTCTAGGGATTATTT+GGG + Chr8:81364924-81364943 MsG0880047052.01.T01:three_prime_UTR 30.0%
!! GAGATTCTTTTGTTTGCATT+GGG + Chr8:81363973-81363992 MsG0880047052.01.T01:intron 30.0%
!! TAGAAGTTCTAGGGATTATT+TGG + Chr8:81364923-81364942 MsG0880047052.01.T01:three_prime_UTR 30.0%
!! TCAACTGTCAACTTTTGTTT+TGG + Chr8:81363419-81363438 MsG0880047052.01.T01:intron 30.0%
!! TGAGATTCTTTTGTTTGCAT+TGG + Chr8:81363972-81363991 MsG0880047052.01.T01:intron 30.0%
!! TTTTGTTTGCATTGGGTTTA+TGG + Chr8:81363980-81363999 MsG0880047052.01.T01:intron 30.0%
!! TTTTTGTAGCCTTAGTTGAA+GGG - Chr8:81362929-81362948 None:intergenic 30.0%
!!! AACTGTCAACTTTTGTTTTG+GGG + Chr8:81363421-81363440 MsG0880047052.01.T01:intron 30.0%
!!! CAACTGTCAACTTTTGTTTT+GGG + Chr8:81363420-81363439 MsG0880047052.01.T01:intron 30.0%
!!! CAGTGTGTGTGTAATTTTTT+TGG + Chr8:81364439-81364458 MsG0880047052.01.T01:intron 30.0%
!!! TTTTGGTAATGTTTCTGCTA+AGG + Chr8:81362444-81362463 MsG0880047052.01.T01:intron 30.0%
AAGGCTACAAAAACACCAAA+GGG + Chr8:81362936-81362955 MsG0880047052.01.T01:intron 35.0%
AAGGTTATTCTCATGCAAAG+AGG + Chr8:81364092-81364111 MsG0880047052.01.T01:intron 35.0%
AATTGAGTTATTGGAGAAGC+AGG + Chr8:81362687-81362706 MsG0880047052.01.T01:intron 35.0%
AGAGATATGATTTCATGGTC+AGG - Chr8:81364067-81364086 None:intergenic 35.0%
AGCTCGAAGAATTGAGTTAT+TGG + Chr8:81362678-81362697 MsG0880047052.01.T01:intron 35.0%
AGGAAATTAAGTTAATGGCG+AGG + Chr8:81362653-81362672 MsG0880047052.01.T01:intron 35.0%
ATCATGCAGGAATATTGGAT+GGG + Chr8:81363027-81363046 MsG0880047052.01.T01:intron 35.0%
CACATACTAGAACATAACGT+AGG - Chr8:81363735-81363754 None:intergenic 35.0%
CATTACCATTGTTTGCTCTT+AGG - Chr8:81363220-81363239 None:intergenic 35.0%
CCAAATAGGAAAACAAAGGA+TGG + Chr8:81363187-81363206 MsG0880047052.01.T01:intron 35.0%
CGAGAAATGAACATTCCAAT+GGG + Chr8:81362540-81362559 MsG0880047052.01.T01:intron 35.0%
CGGTGGTATTTATTTGATTG+GGG + Chr8:81362481-81362500 MsG0880047052.01.T01:intron 35.0%
GAGAAATGAACATTCCAATG+GGG + Chr8:81362541-81362560 MsG0880047052.01.T01:intron 35.0%
GGAAATAGAACTATGTTTGG+CGG + Chr8:81364002-81364021 MsG0880047052.01.T01:intron 35.0%
GGAAATTAAGTTAATGGCGA+GGG + Chr8:81362654-81362673 MsG0880047052.01.T01:intron 35.0%
GGAGAATTTGGAAGAAATGA+TGG + Chr8:81363159-81363178 MsG0880047052.01.T01:intron 35.0%
GGATAATGTGGACAGTATAA+TGG + Chr8:81363616-81363635 MsG0880047052.01.T01:intron 35.0%
GTCACCCAAATCTTCAAAAT+AGG - Chr8:81364250-81364269 None:intergenic 35.0%
GTTCATTTCTCGAATTCCAA+AGG - Chr8:81362532-81362551 None:intergenic 35.0%
TAAGGCTACAAAAACACCAA+AGG + Chr8:81362935-81362954 MsG0880047052.01.T01:intron 35.0%
TACTGATCATGCAGGAATAT+TGG + Chr8:81363022-81363041 MsG0880047052.01.T01:intron 35.0%
TATTGGAGAAGCAGGTAAAA+GGG + Chr8:81362695-81362714 MsG0880047052.01.T01:CDS 35.0%
TCGAGAAATGAACATTCCAA+TGG + Chr8:81362539-81362558 MsG0880047052.01.T01:intron 35.0%
TGGAGGATCAATTAGTAGAA+AGG + Chr8:81362624-81362643 MsG0880047052.01.T01:intron 35.0%
TGTGTAAAACCTCAAGGTTA+TGG + Chr8:81362990-81363009 MsG0880047052.01.T01:intron 35.0%
TTACACCTAAGAGCAAACAA+TGG + Chr8:81363212-81363231 MsG0880047052.01.T01:intron 35.0%
TTATTGGAGAAGCAGGTAAA+AGG + Chr8:81362694-81362713 MsG0880047052.01.T01:CDS 35.0%
TTCAAACTGTTCGTTACCTT+TGG + Chr8:81362513-81362532 MsG0880047052.01.T01:intron 35.0%
TTCAGTAGCATATCCATACA+GGG + Chr8:81363782-81363801 MsG0880047052.01.T01:intron 35.0%
TTTCAGTAGCATATCCATAC+AGG + Chr8:81363781-81363800 MsG0880047052.01.T01:intron 35.0%
! AATCTAGGACTGATATTTGG+TGG + Chr8:81363704-81363723 MsG0880047052.01.T01:intron 35.0%
! AGGAGATTTTCAAATAACGG+TGG + Chr8:81362464-81362483 MsG0880047052.01.T01:intron 35.0%
! ATTTGGGGTAGGTAATATGT+AGG + Chr8:81364940-81364959 MsG0880047052.01.T01:three_prime_UTR 35.0%
! ATTTTGTTCCTGTTCCTTAG+AGG - Chr8:81364161-81364180 None:intergenic 35.0%
! CATTATCCTTTTCAAAACCC+TGG - Chr8:81363604-81363623 None:intergenic 35.0%
! GATGGTATTGAGAAAGAGAT+TGG + Chr8:81362747-81362766 MsG0880047052.01.T01:CDS 35.0%
! GCAAAAGACAATCGTGTTTT+TGG + Chr8:81362427-81362446 MsG0880047052.01.T01:CDS 35.0%
! GTTTGTTGAAGCTGAAGAAT+AGG + Chr8:81362775-81362794 MsG0880047052.01.T01:CDS 35.0%
! TACTACTACTGACTGAACTT+TGG + Chr8:81364785-81364804 MsG0880047052.01.T01:three_prime_UTR 35.0%
! TTTGGGGTAGGTAATATGTA+GGG + Chr8:81364941-81364960 MsG0880047052.01.T01:three_prime_UTR 35.0%
!! AACATTTTGTTTGGTGGGAA+TGG + Chr8:81362593-81362612 MsG0880047052.01.T01:intron 35.0%
!! AAGAGGAACATTTTGTTTGG+TGG + Chr8:81362587-81362606 MsG0880047052.01.T01:intron 35.0%
!! ACATTTTGTTTGGTGGGAAT+GGG + Chr8:81362594-81362613 MsG0880047052.01.T01:intron 35.0%
!! AGAGGAACATTTTGTTTGGT+GGG + Chr8:81362588-81362607 MsG0880047052.01.T01:intron 35.0%
!! ATTGTCTTTTGCTGTATCCA+CGG - Chr8:81362419-81362438 None:intergenic 35.0%
!! GAAGTTCTAGGGATTATTTG+GGG + Chr8:81364925-81364944 MsG0880047052.01.T01:three_prime_UTR 35.0%
!! GTTTTTGTAGCCTTAGTTGA+AGG - Chr8:81362930-81362949 None:intergenic 35.0%
!!! CCATCCTTTGTTTTCCTATT+TGG - Chr8:81363190-81363209 None:intergenic 35.0%
!!! GGGTTTTGAAAAGGATAATG+TGG + Chr8:81363604-81363623 MsG0880047052.01.T01:intron 35.0%
!!! TCTACCAATTTTGGTTGGAA+TGG - Chr8:81364674-81364693 None:intergenic 35.0%
AAAACACCAAAGGGATTTCC+AGG + Chr8:81362945-81362964 MsG0880047052.01.T01:intron 40.0%
AAAAGGGAAGAGGAAGAGAA+TGG + Chr8:81362711-81362730 MsG0880047052.01.T01:CDS 40.0%
AAACACCAAAGGGATTTCCA+GGG + Chr8:81362946-81362965 MsG0880047052.01.T01:intron 40.0%
AAAGGGAAGAGGAAGAGAAT+GGG + Chr8:81362712-81362731 MsG0880047052.01.T01:CDS 40.0%
AAATGCTTCTGGTGTTCCAT+TGG + Chr8:81363084-81363103 MsG0880047052.01.T01:intron 40.0%
AAGAAAAGATCCTACGACCT+AGG - Chr8:81363942-81363961 None:intergenic 40.0%
AAGTGAGTGAAAGGGAAAAG+AGG + Chr8:81362570-81362589 MsG0880047052.01.T01:intron 40.0%
AATCAGGTTACTGATCATGC+AGG + Chr8:81363014-81363033 MsG0880047052.01.T01:intron 40.0%
AATGGGGATCCTGAAATTGA+TGG + Chr8:81362729-81362748 MsG0880047052.01.T01:CDS 40.0%
ACCTCAAGGTTATGGAAATC+AGG + Chr8:81362998-81363017 MsG0880047052.01.T01:intron 40.0%
ACCTGATTTCCATAACCTTG+AGG - Chr8:81363002-81363021 None:intergenic 40.0%
AGACAGCTTCAACTTTATGC+TGG + Chr8:81364554-81364573 MsG0880047052.01.T01:CDS 40.0%
AGGAGCAATGGATACATGTA+GGG - Chr8:81364047-81364066 None:intergenic 40.0%
AGTCAAATATCCTAGGTCGT+AGG + Chr8:81363929-81363948 MsG0880047052.01.T01:intron 40.0%
AGTTGCAACATCTCCTATCA+AGG + Chr8:81364862-81364881 MsG0880047052.01.T01:three_prime_UTR 40.0%
ATACCTAAGAAGTCCCTGTA+TGG - Chr8:81363798-81363817 None:intergenic 40.0%
CATCGTCATGTCACCAATTA+TGG - Chr8:81364641-81364660 None:intergenic 40.0%
CTGGGAAAGTTCAAAACGAA+GGG + Chr8:81363137-81363156 MsG0880047052.01.T01:intron 40.0%
GACAGCTTCAACTTTATGCT+GGG + Chr8:81364555-81364574 MsG0880047052.01.T01:CDS 40.0%
GATCATGCAGGAATATTGGA+TGG + Chr8:81363026-81363045 MsG0880047052.01.T01:intron 40.0%
GCTACTAACTGATGTTGAGA+TGG + Chr8:81364580-81364599 MsG0880047052.01.T01:CDS 40.0%
GGATTTGGAAGTGAGTGAAA+GGG + Chr8:81362562-81362581 MsG0880047052.01.T01:intron 40.0%
GGTGTTCCATTGGAAGAAAA+AGG + Chr8:81363094-81363113 MsG0880047052.01.T01:intron 40.0%
GTTGCAACATCTCCTATCAA+GGG + Chr8:81364863-81364882 MsG0880047052.01.T01:three_prime_UTR 40.0%
GTTTCGTGTGTAAAACCTCA+AGG + Chr8:81362984-81363003 MsG0880047052.01.T01:intron 40.0%
TACATGTTTAGGTGGTTTCC+CGG + Chr8:81363524-81363543 MsG0880047052.01.T01:intron 40.0%
TACTTCTTGTAGCAAACACG+TGG - Chr8:81363451-81363470 None:intergenic 40.0%
TATAATGGCAGTTCAGGACA+AGG + Chr8:81363631-81363650 MsG0880047052.01.T01:intron 40.0%
TATCCATACAGGGACTTCTT+AGG + Chr8:81363792-81363811 MsG0880047052.01.T01:intron 40.0%
TATTGACATGGGAACTGCAT+TGG - Chr8:81364282-81364301 None:intergenic 40.0%
TCAAAACGAAGGGGAGAATT+TGG + Chr8:81363147-81363166 MsG0880047052.01.T01:intron 40.0%
TCACCTGAAGTAAGAGAATG+AGG + Chr8:81363567-81363586 MsG0880047052.01.T01:intron 40.0%
TCATGCAGGAATATTGGATG+GGG + Chr8:81363028-81363047 MsG0880047052.01.T01:intron 40.0%
TCTGGGAAAGTTCAAAACGA+AGG + Chr8:81363136-81363155 MsG0880047052.01.T01:intron 40.0%
TGAACATTCCAATGGGGATT+TGG + Chr8:81362547-81362566 MsG0880047052.01.T01:intron 40.0%
TGGGAAAGTTCAAAACGAAG+GGG + Chr8:81363138-81363157 MsG0880047052.01.T01:intron 40.0%
TGGTATAGGCCATGTCTAAA+AGG + Chr8:81364459-81364478 MsG0880047052.01.T01:intron 40.0%
TGGTGATATGAGTGTGAATC+CGG + Chr8:81362862-81362881 MsG0880047052.01.T01:intron 40.0%
TGTCCTCATTCTCTTACTTC+AGG - Chr8:81363573-81363592 None:intergenic 40.0%
TTCAGCAGCATTGCGATTAA+TGG + Chr8:81362818-81362837 MsG0880047052.01.T01:intron 40.0%
TTGGGGTAGGTAATATGTAG+GGG + Chr8:81364942-81364961 MsG0880047052.01.T01:three_prime_UTR 40.0%
! AAACTTCACCTCTAAGGAAC+AGG + Chr8:81364150-81364169 MsG0880047052.01.T01:intron 40.0%
! ATTCCTATACCGTGCTTTTG+AGG + Chr8:81364185-81364204 MsG0880047052.01.T01:intron 40.0%
! TACTACTGACTGAACTTTGG+TGG + Chr8:81364788-81364807 MsG0880047052.01.T01:three_prime_UTR 40.0%
! TTAGCGAAGATAGGTTTGCT+TGG + Chr8:81363472-81363491 MsG0880047052.01.T01:intron 40.0%
! TTCTAGGGATTATTTGGGGT+AGG + Chr8:81364929-81364948 MsG0880047052.01.T01:three_prime_UTR 40.0%
!! CACTGTCTACCAATTTTGGT+TGG - Chr8:81364679-81364698 None:intergenic 40.0%
!!! AAACTCCCAGGGTTTTGAAA+AGG + Chr8:81363595-81363614 MsG0880047052.01.T01:intron 40.0%
!!! ACCAATTTTGGTTGGAATGG+CGG - Chr8:81364671-81364690 None:intergenic 40.0%
!!! GAACACCAGAAGCATTTTGT+GGG - Chr8:81363081-81363100 None:intergenic 40.0%
AAGCAGTCTTCACCTCTGTT+CGG - Chr8:81364760-81364779 None:intergenic 45.0%
AAGGGAAGAGGAAGAGAATG+GGG + Chr8:81362713-81362732 MsG0880047052.01.T01:CDS 45.0%
AATGAGGACACAAAACTCCC+AGG + Chr8:81363583-81363602 MsG0880047052.01.T01:intron 45.0%
AATGGTCGTGGAAATTCTGC+TGG + Chr8:81362836-81362855 MsG0880047052.01.T01:intron 45.0%
ACCGCCATTCCAACCAAAAT+TGG + Chr8:81364667-81364686 MsG0880047052.01.T01:three_prime_UTR 45.0%
ACTCACTTCCAAATCCCCAT+TGG - Chr8:81362558-81362577 None:intergenic 45.0%
AGAAGCAGGTAAAAGGGAAG+AGG + Chr8:81362701-81362720 MsG0880047052.01.T01:CDS 45.0%
AGCATTGCGATTAATGGTCG+TGG + Chr8:81362824-81362843 MsG0880047052.01.T01:intron 45.0%
ATGAGGACACAAAACTCCCA+GGG + Chr8:81363584-81363603 MsG0880047052.01.T01:intron 45.0%
CAGGAGCAATGGATACATGT+AGG - Chr8:81364048-81364067 None:intergenic 45.0%
GATGAGACTGGCGAATTTGA+AGG + Chr8:81362382-81362401 MsG0880047052.01.T01:CDS 45.0%
GATTTCATGGTCAGGAGCAA+TGG - Chr8:81364059-81364078 None:intergenic 45.0%
GGACAGTATAATGGCAGTTC+AGG + Chr8:81363625-81363644 MsG0880047052.01.T01:intron 45.0%
GGGATTTGGAAGTGAGTGAA+AGG + Chr8:81362561-81362580 MsG0880047052.01.T01:intron 45.0%
GGTGATATGAGTGTGAATCC+GGG + Chr8:81362863-81362882 MsG0880047052.01.T01:intron 45.0%
GTTTCCCGGAGACTAGTATT+GGG + Chr8:81363538-81363557 MsG0880047052.01.T01:CDS 45.0%
TCCAGGGACTCAAGATCATA+GGG + Chr8:81362962-81362981 MsG0880047052.01.T01:intron 45.0%
TGTCACCCACAAAATGCTTC+TGG + Chr8:81363073-81363092 MsG0880047052.01.T01:intron 45.0%
TTCCAGGGACTCAAGATCAT+AGG + Chr8:81362961-81362980 MsG0880047052.01.T01:intron 45.0%
! ACATCCCAATACTAGTCTCC+GGG - Chr8:81363545-81363564 None:intergenic 45.0%
! GACATCCCAATACTAGTCTC+CGG - Chr8:81363546-81363565 None:intergenic 45.0%
! GATCCTCAAAAGCACGGTAT+AGG - Chr8:81364191-81364210 None:intergenic 45.0%
!! ATACCGTGCTTTTGAGGATC+AGG + Chr8:81364191-81364210 MsG0880047052.01.T01:intron 45.0%
!!! GGAACACCAGAAGCATTTTG+TGG - Chr8:81363082-81363101 None:intergenic 45.0%
AAATCCGTTGACGACGAGTC+TGG + Chr8:81363118-81363137 MsG0880047052.01.T01:intron 50.0%
AATCCGTTGACGACGAGTCT+GGG + Chr8:81363119-81363138 MsG0880047052.01.T01:intron 50.0%
ACCCTATGATCTTGAGTCCC+TGG - Chr8:81362966-81362985 None:intergenic 50.0%
ATGCACGGAGAAGATATCGC+TGG + Chr8:81362352-81362371 MsG0880047052.01.T01:CDS 50.0%
CTCCAACGAGAAGGTCACAA+AGG + Chr8:81364115-81364134 MsG0880047052.01.T01:intron 50.0%
GACCTTTGTGACCTTCTCGT+TGG - Chr8:81364120-81364139 None:intergenic 50.0%
GGTTTCCCGGAGACTAGTAT+TGG + Chr8:81363537-81363556 MsG0880047052.01.T01:CDS 50.0%
TGAAGGATTACGAGTGTCCG+TGG + Chr8:81362399-81362418 MsG0880047052.01.T01:CDS 50.0%
TGAGTCCCTGGAAATCCCTT+TGG - Chr8:81362954-81362973 None:intergenic 50.0%
TGAGTGTGAATCCGGGAAAG+AGG + Chr8:81362870-81362889 MsG0880047052.01.T01:intron 50.0%
TGGGAATGGGAAAACTGTGG+AGG + Chr8:81362607-81362626 MsG0880047052.01.T01:intron 50.0%
TGGTGGGAATGGGAAAACTG+TGG + Chr8:81362604-81362623 MsG0880047052.01.T01:intron 50.0%
TTTCCCAGACTCGTCGTCAA+CGG - Chr8:81363125-81363144 None:intergenic 50.0%
! ACTGACTGAACTTTGGTGGC+AGG + Chr8:81364792-81364811 MsG0880047052.01.T01:three_prime_UTR 50.0%
!! ATGTCCACGCTGGTGTCATT+AGG + Chr8:81364888-81364907 MsG0880047052.01.T01:three_prime_UTR 50.0%
ATCAAGGGACATGTCCACGC+TGG + Chr8:81364878-81364897 MsG0880047052.01.T01:three_prime_UTR 55.0%
CGGCCTGATCCTCAAAAGCA+CGG - Chr8:81364197-81364216 None:intergenic 55.0%
CGTGGAAATTCTGCTGGTGG+TGG + Chr8:81362842-81362861 MsG0880047052.01.T01:intron 55.0%
GACGCTGAACTTCCGAACAG+AGG + Chr8:81364745-81364764 MsG0880047052.01.T01:three_prime_UTR 55.0%
GCAAAGAGGCTCCAACGAGA+AGG + Chr8:81364106-81364125 MsG0880047052.01.T01:intron 55.0%
GCGTGGACATGTCCCTTGAT+AGG - Chr8:81364878-81364897 None:intergenic 55.0%
GGTCGTGGAAATTCTGCTGG+TGG + Chr8:81362839-81362858 MsG0880047052.01.T01:intron 55.0%
TGTGCCTAATGACACCAGCG+TGG - Chr8:81364895-81364914 None:intergenic 55.0%
! GCTGGAGCTGTTGATGAGAC+TGG + Chr8:81362370-81362389 MsG0880047052.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr8 gene 81362352 81365033 81362352 ID=MsG0880047052.01;Name=MsG0880047052.01
Chr8 mRNA 81362352 81365033 81362352 ID=MsG0880047052.01.T01;Parent=MsG0880047052.01;Name=MsG0880047052.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|0.33|0|4|390|115
Chr8 exon 81362352 81362448 81362352 ID=MsG0880047052.01.T01:exon:10634;Parent=MsG0880047052.01.T01
Chr8 exon 81362694 81362804 81362694 ID=MsG0880047052.01.T01:exon:10635;Parent=MsG0880047052.01.T01
Chr8 exon 81363535 81363575 81363535 ID=MsG0880047052.01.T01:exon:10636;Parent=MsG0880047052.01.T01
Chr8 exon 81364545 81365033 81364545 ID=MsG0880047052.01.T01:exon:10637;Parent=MsG0880047052.01.T01
Chr8 CDS 81362352 81362448 81362352 ID=MsG0880047052.01.T01:cds;Parent=MsG0880047052.01.T01
Chr8 CDS 81362694 81362804 81362694 ID=MsG0880047052.01.T01:cds;Parent=MsG0880047052.01.T01
Chr8 CDS 81363535 81363575 81363535 ID=MsG0880047052.01.T01:cds;Parent=MsG0880047052.01.T01
Chr8 CDS 81364545 81364643 81364545 ID=MsG0880047052.01.T01:cds;Parent=MsG0880047052.01.T01
Chr8 three_prime_UTR 81364644 81365033 81364644 ID=MsG0880047052.01.T01:three_prime_utr;Parent=MsG0880047052.01.T01
Gene Sequence

>MsG0880047052.01.T01

ATGCACGGAGAAGATATCGCTGGAGCTGTTGATGAGACTGGCGAATTTGAAGGATTACGAGTGTCCGTGGATACAGCAAAAGACAATCGTGTTTTTGTTATTGGAGAAGCAGGTAAAAGGGAAGAGGAAGAGAATGGGGATCCTGAAATTGATGGTATTGAGAAAGAGATTGGTGAACGTTTGTTGAAGCTGAAGAATAGGATTAAGAGTGGTTTCCCGGAGACTAGTATTGGGATGTCTTCACCTGAATTTAAAAAGAGACAGCTTCAACTTTATGCTGGGCAGCTACTAACTGATGTTGAGATGGCGTTGTGCTCTATAATAGAACAAGATCAAAATGTGCCATAA

Protein sequence

>MsG0880047052.01.T01

MHGEDIAGAVDETGEFEGLRVSVDTAKDNRVFVIGEAGKREEEENGDPEIDGIEKEIGERLLKLKNRIKSGFPETSIGMSSPEFKKRQLQLYAGQLLTDVEMALCSIIEQDQNVP*