AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0008960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008960 MtrunA17_Chr1g0146151 97.156 422 12 0 1 422 1 422 0.0 851
Msa0008960 MtrunA17_Chr3g0140071 62.558 430 154 2 1 423 1 430 0.0 536
Msa0008960 MtrunA17_Chr6g0486611 71.914 324 90 1 1 323 1 324 2.13e-177 501
Msa0008960 MtrunA17_Chr8g0390211 59.441 429 163 5 1 423 1 424 6.28e-177 500
Msa0008960 MtrunA17_Chr4g0071031 67.173 329 105 1 1 326 1 329 7.36e-167 476
Msa0008960 MtrunA17_Chr2g0329981 67.391 322 105 0 1 322 1 322 2.09e-165 473
Msa0008960 MtrunA17_Chr2g0299661 65.653 329 110 1 1 326 1 329 5.25e-164 469
Msa0008960 MtrunA17_Chr1g0166821 68.153 314 100 0 1 314 2 315 9.00e-164 468
Msa0008960 MtrunA17_Chr1g0183631 70.169 295 88 0 1 295 1 295 2.36e-162 464
Msa0008960 MtrunA17_Chr1g0187571 66.242 314 106 0 1 314 2 315 8.46e-161 461
Msa0008960 MtrunA17_Chr8g0342821 66.144 319 107 1 1 319 1 318 2.78e-160 460
Msa0008960 MtrunA17_Chr7g0261501 62.059 340 125 1 1 336 1 340 1.19e-158 455
Msa0008960 MtrunA17_Chr1g0167261 60.559 322 118 2 1 320 2 316 2.92e-141 407
Msa0008960 MtrunA17_Chr1g0146301 37.809 283 162 7 2 273 114 393 2.95e-54 191
Msa0008960 MtrunA17_Chr1g0213321 37.500 280 161 6 5 273 113 389 4.38e-54 191
Msa0008960 MtrunA17_Chr7g0214531 35.439 285 165 6 5 273 31 312 4.05e-53 187
Msa0008960 MtrunA17_Chr3g0140431 36.749 283 165 7 2 273 28 307 1.31e-52 185
Msa0008960 MtrunA17_Chr7g0253211 35.231 281 166 5 9 276 324 601 1.06e-48 177
Msa0008960 MtrunA17_Chr8g0340491 34.043 282 164 6 9 273 128 404 3.74e-46 169
Msa0008960 MtrunA17_Chr5g0405421 27.854 219 142 5 2 213 92 301 1.71e-14 75.5
Msa0008960 MtrunA17_Chr8g0387671 29.717 212 131 7 9 213 66 266 1.15e-13 72.8
Msa0008960 MtrunA17_Chr5g0432471 27.016 248 146 9 3 236 6 232 1.19e-13 72.4
Msa0008960 MtrunA17_Chr8g0374701 26.106 226 144 5 1 213 117 332 1.51e-13 72.4
Msa0008960 MtrunA17_Chr5g0397101 28.182 220 132 6 5 213 63 267 1.83e-13 72.0
Msa0008960 MtrunA17_Chr4g0075541 27.881 269 164 9 11 269 89 337 2.00e-13 71.2
Msa0008960 MtrunA17_Chr0c02g0489761 30.000 220 128 8 5 213 74 278 2.93e-13 71.6
Msa0008960 MtrunA17_Chr3g0107011 27.500 240 153 9 4 236 9 234 3.75e-13 70.9
Msa0008960 MtrunA17_Chr4g0047201 25.592 211 135 7 77 284 276 467 2.24e-12 68.6
Msa0008960 MtrunA17_Chr7g0274941 25.000 236 158 5 8 237 15 237 2.45e-12 67.4
Msa0008960 MtrunA17_Chr5g0428031 26.638 229 147 7 7 227 7 222 2.64e-12 68.2
Msa0008960 MtrunA17_Chr1g0203881 26.582 237 155 7 8 238 40 263 3.34e-12 68.2
Msa0008960 MtrunA17_Chr7g0244621 26.897 290 166 14 11 278 47 312 4.43e-12 67.0
Msa0008960 MtrunA17_Chr7g0276111 25.339 221 145 5 3 213 138 348 5.27e-12 67.8
Msa0008960 MtrunA17_Chr7g0245031 26.496 234 150 7 9 236 148 365 6.88e-12 67.0
Msa0008960 MtrunA17_Chr5g0402601 24.252 301 195 10 8 293 371 653 7.55e-12 67.4
Msa0008960 MtrunA17_Chr8g0345801 27.068 266 166 10 1 258 8 253 1.71e-11 64.3
Msa0008960 MtrunA17_Chr4g0072831 28.319 226 114 8 7 232 8 185 2.32e-11 64.7
Msa0008960 MtrunA17_Chr2g0304111 29.279 222 128 11 6 214 20 225 2.36e-11 65.5
Msa0008960 MtrunA17_Chr8g0385341 27.014 211 138 5 9 213 30 230 2.44e-11 65.5
Msa0008960 MtrunA17_Chr4g0033371 29.586 169 109 4 8 167 71 238 3.28e-11 65.1
Msa0008960 MtrunA17_Chr4g0045261 25.778 225 143 6 1 213 129 341 3.60e-11 65.1
Msa0008960 MtrunA17_Chr7g0267771 25.822 213 142 5 9 215 88 290 3.85e-11 64.7
Msa0008960 MtrunA17_Chr3g0140631 25.498 251 157 9 9 250 37 266 8.58e-11 62.8
Msa0008960 MtrunA17_Chr3g0127571 25.561 223 142 7 3 213 132 342 9.72e-11 63.5
Msa0008960 MtrunA17_Chr1g0201571 25.214 234 150 9 9 231 126 345 9.95e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008960 AT4G28860.1 59.615 416 148 3 1 408 1 404 3.66e-180 508
Msa0008960 AT4G28880.3 57.895 418 164 4 1 413 1 411 2.88e-177 501
Msa0008960 AT4G28880.2 57.895 418 164 4 1 413 1 411 2.88e-177 501
Msa0008960 AT4G28880.1 57.895 418 164 4 1 413 1 411 2.88e-177 501
Msa0008960 AT4G28880.4 57.895 418 164 4 1 413 1 411 2.88e-177 501
Msa0008960 AT4G28860.2 64.208 366 119 2 1 366 1 354 1.80e-176 498
Msa0008960 AT5G57015.1 68.354 316 100 0 1 316 1 316 9.52e-166 473
Msa0008960 AT4G26100.1 55.831 403 172 3 1 403 1 397 1.65e-165 473
Msa0008960 AT3G23340.1 55.779 398 171 2 1 396 1 395 1.72e-161 462
Msa0008960 AT1G72710.1 65.839 322 109 1 1 322 1 321 1.64e-160 461
Msa0008960 AT5G44100.1 68.792 298 93 0 1 298 1 298 2.62e-159 458
Msa0008960 AT5G44100.2 68.792 298 93 0 1 298 1 298 2.62e-159 458
Msa0008960 AT1G03930.1 67.450 298 97 0 1 298 1 298 2.68e-158 455
Msa0008960 AT2G19470.1 54.591 403 168 3 1 403 1 388 1.24e-156 449
Msa0008960 AT4G28540.1 66.780 295 98 0 1 295 5 299 2.42e-155 448
Msa0008960 AT5G43320.1 67.114 298 98 0 1 298 1 298 7.29e-155 447
Msa0008960 AT4G14340.1 59.420 345 140 0 1 345 7 351 9.56e-154 443
Msa0008960 AT1G04440.1 66.443 298 100 0 1 298 1 298 2.33e-153 442
Msa0008960 AT5G43320.2 60.714 336 132 0 1 336 1 336 2.49e-153 439
Msa0008960 AT5G43320.3 60.714 336 132 0 1 336 1 336 2.49e-153 439
Msa0008960 AT4G14340.2 61.963 326 124 0 1 326 7 332 8.13e-153 437
Msa0008960 AT3G23340.2 52.513 398 170 3 1 396 1 381 5.87e-147 425
Msa0008960 AT4G08800.1 57.718 298 94 2 1 298 1 266 1.39e-123 360
Msa0008960 AT2G25760.2 36.786 280 162 4 9 273 107 386 3.81e-55 194
Msa0008960 AT3G13670.1 35.640 289 167 6 5 277 131 416 1.06e-53 190
Msa0008960 AT2G25760.1 36.786 280 159 5 9 273 107 383 1.35e-53 189
Msa0008960 AT3G03940.1 35.461 282 166 5 9 277 140 418 2.30e-50 181
Msa0008960 AT5G18190.2 35.106 282 167 5 9 277 130 408 3.97e-50 180
Msa0008960 AT5G18190.1 35.106 282 167 5 9 277 130 408 3.97e-50 180
Msa0008960 AT3G06030.1 28.571 245 144 8 8 237 67 295 1.73e-14 75.9
Msa0008960 AT2G17890.1 28.169 213 137 5 8 213 107 310 2.26e-14 75.5
Msa0008960 AT4G36070.2 27.982 218 140 6 8 217 70 278 2.31e-14 75.5
Msa0008960 AT5G66210.5 28.302 212 136 5 9 213 62 264 3.29e-14 74.7
Msa0008960 AT4G36070.1 27.982 218 140 6 8 217 70 278 3.29e-14 74.7
Msa0008960 AT5G66210.3 28.302 212 136 5 9 213 62 264 3.48e-14 74.7
Msa0008960 AT5G66210.6 28.302 212 136 5 9 213 62 264 3.82e-14 74.3
Msa0008960 AT5G66210.4 28.302 212 136 5 9 213 62 264 3.82e-14 74.3
Msa0008960 AT5G66210.1 28.302 212 136 5 9 213 62 264 5.72e-14 73.9
Msa0008960 AT5G66210.2 28.302 212 136 5 9 213 62 264 5.72e-14 73.9
Msa0008960 AT2G46700.1 27.354 223 138 7 3 213 137 347 1.16e-13 73.2
Msa0008960 AT5G66850.1 27.039 233 147 7 5 224 342 564 1.87e-13 72.8
Msa0008960 AT5G66850.2 27.039 233 147 7 5 224 342 564 2.08e-13 72.8
Msa0008960 AT3G49370.1 27.854 219 138 6 7 215 140 348 3.14e-13 72.0
Msa0008960 AT1G62400.1 28.090 267 162 9 11 267 88 334 4.77e-13 70.9
Msa0008960 AT5G25110.1 25.726 241 158 8 3 236 37 263 6.42e-13 70.9
Msa0008960 AT3G50530.1 26.009 223 145 5 1 213 140 352 1.14e-12 70.1
Msa0008960 AT3G53930.2 24.627 268 175 6 5 254 16 274 1.38e-12 70.1
Msa0008960 AT3G53930.1 24.627 268 175 6 5 254 16 274 1.48e-12 70.1
Msa0008960 AT5G10930.1 25.620 242 158 8 3 236 6 233 1.65e-12 69.3
Msa0008960 AT4G14580.1 27.511 229 134 9 2 213 10 223 1.77e-12 69.3
Msa0008960 AT4G23650.1 30.876 217 126 8 9 215 78 280 1.87e-12 69.3
Msa0008960 AT3G23000.1 26.068 234 152 8 3 227 19 240 3.89e-12 68.2
Msa0008960 AT1G51660.1 25.882 255 156 10 12 255 82 314 5.23e-12 67.4
Msa0008960 AT2G31500.1 28.111 217 130 7 8 213 65 266 5.48e-12 68.2
Msa0008960 AT1G01140.3 26.141 241 150 10 7 236 17 240 6.78e-12 67.4
Msa0008960 AT1G01140.1 26.141 241 150 10 7 236 17 240 9.16e-12 67.0
Msa0008960 AT3G08720.1 25.000 232 155 6 9 236 140 356 9.37e-12 67.0
Msa0008960 AT3G08720.3 25.000 232 155 6 9 236 140 356 9.37e-12 67.0
Msa0008960 AT3G08720.4 25.000 232 155 6 9 236 140 356 9.37e-12 67.0
Msa0008960 AT3G08720.2 25.000 232 155 6 9 236 140 356 9.37e-12 67.0
Msa0008960 AT1G08650.2 27.236 246 146 9 8 240 14 239 1.24e-11 65.5
Msa0008960 AT1G08650.1 26.446 242 153 7 8 240 14 239 1.29e-11 65.5
Msa0008960 AT4G24400.1 25.200 250 156 8 7 249 7 232 1.76e-11 66.2
Msa0008960 AT5G24430.1 27.397 219 139 7 7 215 141 349 2.01e-11 66.2
Msa0008960 AT3G01090.2 30.047 213 127 9 9 213 42 240 2.60e-11 65.9
Msa0008960 AT4G24400.2 25.200 250 156 8 7 249 7 232 2.72e-11 65.5
Msa0008960 AT3G01090.3 30.047 213 127 9 9 213 19 217 2.87e-11 65.9
Msa0008960 AT3G01090.1 30.047 213 127 9 9 213 19 217 2.87e-11 65.9
Msa0008960 AT1G35670.1 27.586 232 149 7 9 234 26 244 3.18e-11 65.5
Msa0008960 AT3G08730.1 25.630 238 157 7 4 236 128 350 3.21e-11 65.5
Msa0008960 AT3G08730.2 25.630 238 157 7 4 236 128 350 3.21e-11 65.5
Msa0008960 AT2G17530.2 31.973 147 88 4 2 136 31 177 3.60e-11 64.7
Msa0008960 AT2G17530.1 31.973 147 88 4 2 136 31 177 3.61e-11 65.1
Msa0008960 AT2G17530.3 31.973 147 88 4 2 136 31 177 3.61e-11 65.1
Msa0008960 AT5G21326.1 26.104 249 140 10 7 236 11 234 3.70e-11 65.1
Msa0008960 AT4G32830.1 26.582 237 144 9 9 236 31 246 3.96e-11 63.9
Msa0008960 AT1G01140.2 27.686 242 147 12 7 236 17 242 4.23e-11 65.1
Msa0008960 AT1G67580.1 27.848 237 143 8 14 240 411 629 5.05e-11 65.1
Msa0008960 AT1G67580.2 27.848 237 143 8 14 240 411 629 5.05e-11 65.1
Msa0008960 AT1G63700.1 26.695 236 135 9 6 224 397 611 6.09e-11 65.1
Msa0008960 AT1G63700.2 26.695 236 135 9 6 224 397 611 6.09e-11 65.1
Msa0008960 AT2G41860.1 26.415 212 140 6 8 213 53 254 9.15e-11 64.3

Find 96 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCTAGTTCTTGAACTTA+TGG 0.162372 1_1:+13046584 Msa0008960:CDS
GAGGTTTCCACAGTCGTTTC+TGG 0.189583 1_1:-13049341 None:intergenic
TCCACAGTCGTTTCTGGTTT+TGG 0.193952 1_1:-13049335 None:intergenic
GTACCAAACCATTTCATTCT+TGG 0.227657 1_1:-13046546 None:intergenic
CATTAGACTAACCTTCTTAA+TGG 0.235709 1_1:-13045768 None:intergenic
CAGGTTTGTATGATTGATTT+TGG 0.244306 1_1:+13047349 Msa0008960:intron
CAAACCGGATAACTTTCTTA+TGG 0.257400 1_1:+13047211 Msa0008960:CDS
TCATTTGGTGAAATTTATAT+TGG 0.266055 1_1:+13045635 Msa0008960:CDS
TTTGATCAACGACCAGATTA+TGG 0.266409 1_1:+13048336 Msa0008960:CDS
TATAGAATTGGTAGGAAAAT+TGG 0.283963 1_1:+13045605 Msa0008960:CDS
GTTCTAGTTCTTGAACTTAT+GGG 0.299967 1_1:+13046585 Msa0008960:CDS
AAGTTATATAACATTCTTAA+AGG 0.300843 1_1:+13046401 Msa0008960:CDS
GCAAAGCCGCAGAGATGATT+TGG 0.307778 1_1:+13047886 Msa0008960:CDS
AAACCGGATAACTTTCTTAT+GGG 0.337171 1_1:+13047212 Msa0008960:CDS
CGTGAATTGTTCACTTCTAA+AGG 0.349173 1_1:+13048378 Msa0008960:CDS
GATAACTTTCTTATGGGTCT+TGG 0.366159 1_1:+13047218 Msa0008960:CDS
GTAGGCATGACCGTGGAAAT+AGG 0.370390 1_1:-13049302 None:intergenic
GTTGGAGGAAAGTATAGAAT+TGG 0.371829 1_1:+13045593 Msa0008960:CDS
GTTACAAGCATATCCCTTAC+AGG 0.376749 1_1:+13047401 Msa0008960:CDS
TCAGGAGATTCAACAGATAA+AGG 0.377164 1_1:+13048636 Msa0008960:CDS
CGCTTCAAATATCCATAATC+TGG 0.378050 1_1:-13048348 None:intergenic
TCAAACCCGGATGACGTGTT+AGG 0.378550 1_1:+13049362 Msa0008960:CDS
CACATCCTCTGGTTCAATAC+TGG 0.381850 1_1:-13048894 None:intergenic
TAGAAAATCTTATACCTGTA+AGG 0.385287 1_1:-13047415 None:intergenic
GTACCCTACCGTCTACTTGA+TGG 0.392848 1_1:-13049438 None:intergenic
TTGGACTTTCAAAAGGATAC+AGG 0.395538 1_1:+13047368 Msa0008960:CDS
AAAATTGGTAGTGGATCATT+TGG 0.395776 1_1:+13045620 Msa0008960:CDS
ATACTGGTAGGCACGGCAAC+TGG 0.401062 1_1:-13048878 None:intergenic
TTAATCCCTAACACGTCATC+CGG 0.402705 1_1:-13049368 None:intergenic
CACGTGTTTGTATGAAGCTC+AGG 0.404014 1_1:+13049100 Msa0008960:CDS
AGCAATACTCACAAAGGAAT+TGG 0.405316 1_1:+13047768 Msa0008960:CDS
ATTCCAAGAATGAAATGGTT+TGG 0.419642 1_1:+13046543 Msa0008960:CDS
ATAACTTTCTTATGGGTCTT+GGG 0.425665 1_1:+13047219 Msa0008960:CDS
CATACAAACACGTGGACGTT+CGG 0.428322 1_1:-13049091 None:intergenic
TTTGATGTTGGCCGATCAAA+TGG 0.434639 1_1:+13046665 Msa0008960:CDS
GTGGTATTCCAAGAATGAAA+TGG 0.445472 1_1:+13046538 Msa0008960:CDS
TAACACGTCATCCGGGTTTG+AGG 0.451900 1_1:-13049360 None:intergenic
ATGCTGACTATTTATATGAC+TGG 0.453335 1_1:+13048599 Msa0008960:CDS
AAGTGAACAATTCACGAAAC+AGG 0.453549 1_1:-13048371 None:intergenic
GATAGAGTATTTACATTCCA+AGG 0.456851 1_1:+13047169 Msa0008960:CDS
TCTTGGGAAGAAAGCAAATC+AGG 0.466032 1_1:+13047235 Msa0008960:CDS
CATGATCCGCATACCTCAAT+GGG 0.474980 1_1:-13048147 None:intergenic
ATCTCTGTGTAGTAATCCCT+TGG 0.476514 1_1:-13047186 None:intergenic
TGAGCTTGTGGCCATTAAGA+AGG 0.478601 1_1:+13045757 Msa0008960:CDS
ACAACCACAACTACTATATG+AGG 0.480898 1_1:+13046376 Msa0008960:CDS
CAAACCCGGATGACGTGTTA+GGG 0.483244 1_1:+13049363 Msa0008960:CDS
AGAGATGATTTGGAGTCTCT+TGG 0.485541 1_1:+13047896 Msa0008960:CDS
GTATGCTCATCCACATCCTC+TGG 0.492959 1_1:-13048905 None:intergenic
TACTGATTTACCTATTTCCA+CGG 0.495395 1_1:+13049292 Msa0008960:CDS
CAGTATTGAACCAGAGGATG+TGG 0.498938 1_1:+13048895 Msa0008960:CDS
TTGATGGAAAAGGTTGTTGG+AGG 0.500008 1_1:+13045578 None:intergenic
ACATGATCCGCATACCTCAA+TGG 0.503636 1_1:-13048148 None:intergenic
ATGTGGTGCTTCTGATGACT+TGG 0.503678 1_1:+13049391 Msa0008960:CDS
ATCAATGATTACCATTTGAT+CGG 0.515460 1_1:-13046676 None:intergenic
TTTGCCTCATATAGTAGTTG+TGG 0.516903 1_1:-13046380 None:intergenic
TGTTGTGACTTCTGAGCTTG+TGG 0.519886 1_1:+13045745 Msa0008960:CDS
AGAAAATCTTATACCTGTAA+GGG 0.525824 1_1:-13047414 None:intergenic
ATGAAATGGTTTGGTACTGA+TGG 0.526555 1_1:+13046552 Msa0008960:CDS
GGGATATGCTTGTAACTGAT+AGG 0.529353 1_1:-13047394 None:intergenic
GAGGATGTGGATGAGCATAC+AGG 0.543688 1_1:+13048908 Msa0008960:CDS
ATTGGTAGGAAAATTGGTAG+TGG 0.545412 1_1:+13045611 Msa0008960:CDS
TAAAGCAGGTCATCGAGACT+CGG 0.547238 1_1:-13046609 None:intergenic
AGACCCATAAGAAAGTTATC+CGG 0.547262 1_1:-13047215 None:intergenic
CTTGCAGACCTTGCCAAGGA+AGG 0.550925 1_1:-13048071 None:intergenic
ACCTGCTTTACTACTGTAGT+GGG 0.563020 1_1:+13046622 Msa0008960:CDS
GATGGAACTCGGCGTAGTGA+AGG 0.567947 1_1:-13049416 None:intergenic
ATAGAGTATTTACATTCCAA+GGG 0.572950 1_1:+13047170 Msa0008960:CDS
AAAGCAGGTCATCGAGACTC+GGG 0.573344 1_1:-13046608 None:intergenic
TAATCCCTAACACGTCATCC+GGG 0.576010 1_1:-13049367 None:intergenic
CCTACCGTCTACTTGATGGA+TGG 0.576433 1_1:-13049434 None:intergenic
TCCCACTACAGTAGTAAAGC+AGG 0.584326 1_1:-13046623 None:intergenic
TGGACTTTCAAAAGGATACA+GGG 0.587624 1_1:+13047369 Msa0008960:CDS
GACTGTGGAAACCTCAAACC+CGG 0.587686 1_1:+13049349 Msa0008960:CDS
GACCTGCTTTACTACTGTAG+TGG 0.588567 1_1:+13046621 Msa0008960:CDS
TATTTCCACGGTCATGCCTA+CGG 0.591799 1_1:+13049304 Msa0008960:CDS
ACTACACAGAGATATCAAAC+CGG 0.594392 1_1:+13047196 Msa0008960:CDS
TTATATAACATTCTTAAAGG+AGG 0.598364 1_1:+13046404 Msa0008960:CDS
GAGGAAAGTATAGAATTGGT+AGG 0.607818 1_1:+13045597 Msa0008960:CDS
GCCTACCAGTATTGAACCAG+AGG 0.614006 1_1:+13048889 Msa0008960:CDS
TGGTTCAATACTGGTAGGCA+CGG 0.622152 1_1:-13048885 None:intergenic
AAGTAAGAAGCAAACTCCAC+GGG 0.633022 1_1:-13048291 None:intergenic
TGGTCGTTGATCAAATGTCA+AGG 0.635061 1_1:-13048328 None:intergenic
AAAGTAAGAAGCAAACTCCA+CGG 0.637426 1_1:-13048292 None:intergenic
GCAAGTAGCAATACTCACAA+AGG 0.640002 1_1:+13047762 Msa0008960:CDS
GCAGCTTGCAGACCTTGCCA+AGG 0.651297 1_1:-13048075 None:intergenic
ACGTGTTTGTATGAAGCTCA+GGG 0.653358 1_1:+13049101 Msa0008960:CDS
GAAGTTAAACACTCCCATTG+AGG 0.660651 1_1:+13048134 Msa0008960:CDS
CTGAGCTTCATACAAACACG+TGG 0.660997 1_1:-13049099 None:intergenic
TCCTCTGGTTCAATACTGGT+AGG 0.662946 1_1:-13048890 None:intergenic
ACTTTGCAAGTCATGTCCCG+TGG 0.667670 1_1:+13048275 Msa0008960:CDS
ATCTTCCGTAGGCATGACCG+TGG 0.672310 1_1:-13049309 None:intergenic
TCTACTTGATGGATGGAACT+CGG 0.675086 1_1:-13049427 None:intergenic
GTTGATCAAATGTCAAGGAG+CGG 0.678095 1_1:-13048323 None:intergenic
TCCAAAACCAGAAACGACTG+TGG 0.684719 1_1:+13049334 Msa0008960:CDS
GAGACTCCAAATCATCTCTG+CGG 0.717836 1_1:-13047892 None:intergenic
GACGTGTTAGGGATTAAATG+TGG 0.750915 1_1:+13049374 Msa0008960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTAATTTTTTTTCTTTATT+TGG + chr1_1:13045833-13045852 Msa0008960:intron 10.0%
!!! TTACATCATTTTTATCTTTT+CGG + chr1_1:13046164-13046183 Msa0008960:intron 15.0%
!!! TGTTTAAATTTTGATTCATT+TGG + chr1_1:13046272-13046291 Msa0008960:intron 15.0%
!! AAGTTATATAACATTCTTAA+AGG + chr1_1:13046401-13046420 Msa0008960:CDS 15.0%
!! AGATAAATTTAAAAACAGAA+AGG - chr1_1:13046731-13046750 None:intergenic 15.0%
!! ATAAATCATACGTTAAAAAT+TGG - chr1_1:13047312-13047331 None:intergenic 15.0%
!!! CTTTGATTTTATTTTCTAAA+AGG + chr1_1:13047600-13047619 Msa0008960:intron 15.0%
!!! TTTTTACATATGTTTAATAC+CGG - chr1_1:13048196-13048215 None:intergenic 15.0%
!! ATATAGTTAAATTCAAACTT+TGG + chr1_1:13048717-13048736 Msa0008960:intron 15.0%
!!! TCATTTGGTGAAATTTATAT+TGG + chr1_1:13045635-13045654 Msa0008960:CDS 20.0%
!!! AATTTTTGATGATCATTTTC+AGG + chr1_1:13045716-13045735 Msa0008960:intron 20.0%
!!! AACGAAAAAAAGGTTTTTTT+CGG - chr1_1:13046052-13046071 None:intergenic 20.0%
!!! AATAGATGTTCTTGTTTTAT+AGG + chr1_1:13046337-13046356 Msa0008960:intron 20.0%
!! TTATATAACATTCTTAAAGG+AGG + chr1_1:13046404-13046423 Msa0008960:CDS 20.0%
!! ATCACTATAATGAATTAGAA+AGG - chr1_1:13046508-13046527 None:intergenic 20.0%
!! TTTCTAATTCATTATAGTGA+TGG + chr1_1:13046507-13046526 Msa0008960:intron 20.0%
!! AATAAGCTAAAAACAACTTA+TGG + chr1_1:13047039-13047058 Msa0008960:intron 20.0%
!! TGTTATAAAAGAAATGAAAC+AGG - chr1_1:13047140-13047159 None:intergenic 20.0%
!! ATGAAATATGTTACAATAAC+AGG + chr1_1:13047330-13047349 Msa0008960:intron 20.0%
!!! ATTTTTATCATGTGAATTCT+TGG + chr1_1:13047554-13047573 Msa0008960:intron 20.0%
!!! TTTTTCATATTTTTGCATTC+TGG - chr1_1:13048103-13048122 None:intergenic 20.0%
!!! AAAAAGTACATGTACTTATT+TGG + chr1_1:13048211-13048230 Msa0008960:intron 20.0%
!! TCAAAATAAAAATTGAAGCT+TGG - chr1_1:13048694-13048713 None:intergenic 20.0%
!! TGAAAATTTAACCATGAAAA+GGG - chr1_1:13048746-13048765 None:intergenic 20.0%
!! ATGAAAATTTAACCATGAAA+AGG - chr1_1:13048747-13048766 None:intergenic 20.0%
!!! TTTTCATGGTTAAATGTATA+TGG + chr1_1:13048786-13048805 Msa0008960:intron 20.0%
! TATAGAATTGGTAGGAAAAT+TGG + chr1_1:13045605-13045624 Msa0008960:CDS 25.0%
!!! GAAATTGTTGCTTTGATTTT+TGG + chr1_1:13045793-13045812 Msa0008960:intron 25.0%
!! TTTGGTGTAATAATTGTGAT+TGG + chr1_1:13045851-13045870 Msa0008960:intron 25.0%
! TTGGTGTAATAATTGTGATT+GGG + chr1_1:13045852-13045871 Msa0008960:intron 25.0%
!!! ACGAAAAAAAGGTTTTTTTC+GGG - chr1_1:13046051-13046070 None:intergenic 25.0%
! ATATAGAAGCAACGAAAAAA+AGG - chr1_1:13046062-13046081 None:intergenic 25.0%
! AGTCACATTTACGTTAATAA+TGG + chr1_1:13046108-13046127 Msa0008960:intron 25.0%
! TGTAAATTATCACAAAGTTG+AGG - chr1_1:13046318-13046337 None:intergenic 25.0%
!! CATTATAGTGATGGAATTTA+AGG + chr1_1:13046516-13046535 Msa0008960:intron 25.0%
! ATCAATGATTACCATTTGAT+CGG - chr1_1:13046679-13046698 None:intergenic 25.0%
!! AGCACATTAGTTTAAAATGA+AGG + chr1_1:13046843-13046862 Msa0008960:intron 25.0%
!! GCACATTAGTTTAAAATGAA+GGG + chr1_1:13046844-13046863 Msa0008960:intron 25.0%
!!! AGTTGTTTTTATAAGCTATC+TGG + chr1_1:13047003-13047022 Msa0008960:intron 25.0%
!!! GTTGTTTTTATAAGCTATCT+GGG + chr1_1:13047004-13047023 Msa0008960:intron 25.0%
! ATCCAATAAGTAAATCAAAC+AGG + chr1_1:13047107-13047126 Msa0008960:intron 25.0%
!! ATAGAGTATTTACATTCCAA+GGG + chr1_1:13047170-13047189 Msa0008960:CDS 25.0%
! ACTATAGAGGAATTAAAACA+TGG - chr1_1:13047288-13047307 None:intergenic 25.0%
! GTTAAAAATTGGAACTATAG+AGG - chr1_1:13047301-13047320 None:intergenic 25.0%
!!! ATTGATTTTGGACTTTCAAA+AGG + chr1_1:13047361-13047380 Msa0008960:CDS 25.0%
! AGAAAATCTTATACCTGTAA+GGG - chr1_1:13047417-13047436 None:intergenic 25.0%
! TAGAAAATCTTATACCTGTA+AGG - chr1_1:13047418-13047437 None:intergenic 25.0%
! TCTTAACAAGACAATAAAGA+AGG - chr1_1:13047815-13047834 None:intergenic 25.0%
!!! GTTCTTTTGTACTTTTTAAG+AGG + chr1_1:13047923-13047942 Msa0008960:CDS 25.0%
!!! TTTTGTACTTTTTAAGAGGA+AGG + chr1_1:13047927-13047946 Msa0008960:CDS 25.0%
! ATGGTAAAAGTAGAATCAAT+AGG - chr1_1:13047963-13047982 None:intergenic 25.0%
! TCACTTCCTAAATTTATGTT+TGG + chr1_1:13048567-13048586 Msa0008960:intron 25.0%
!!! ATGCTCAAACATTTTTTTCA+TGG + chr1_1:13048772-13048791 Msa0008960:intron 25.0%
! CAATATTATCAGTATTGTGA+AGG + chr1_1:13048975-13048994 Msa0008960:intron 25.0%
!! CAATCATTGTATTCTGAAAA+AGG - chr1_1:13049036-13049055 None:intergenic 25.0%
!! AAAATTGGTAGTGGATCATT+TGG + chr1_1:13045620-13045639 Msa0008960:CDS 30.0%
CATTAGACTAACCTTCTTAA+TGG - chr1_1:13045771-13045790 None:intergenic 30.0%
!! CATTAAGAAGGTTAGTCTAA+TGG + chr1_1:13045769-13045788 Msa0008960:intron 30.0%
TATGAATTACAAATGCTCCT+GGG + chr1_1:13045937-13045956 Msa0008960:intron 30.0%
ACTAAGATACACTTGTTCTT+AGG - chr1_1:13045972-13045991 None:intergenic 30.0%
! TTTATCTTTTCGGTAGTAGA+TGG + chr1_1:13046174-13046193 Msa0008960:intron 30.0%
AGGAGGAAGTAAGTTATAAA+AGG + chr1_1:13046421-13046440 Msa0008960:intron 30.0%
ACAAAGGGAATATATTGTGA+GGG - chr1_1:13046476-13046495 None:intergenic 30.0%
AACAAAGGGAATATATTGTG+AGG - chr1_1:13046477-13046496 None:intergenic 30.0%
GAAAGGACTAAGAAAACAAA+GGG - chr1_1:13046491-13046510 None:intergenic 30.0%
AGAAAGGACTAAGAAAACAA+AGG - chr1_1:13046492-13046511 None:intergenic 30.0%
! TATAGTGATGGAATTTAAGG+TGG + chr1_1:13046519-13046538 Msa0008960:intron 30.0%
ATTCCAAGAATGAAATGGTT+TGG + chr1_1:13046543-13046562 Msa0008960:CDS 30.0%
!! TGTTCTAGTTCTTGAACTTA+TGG + chr1_1:13046584-13046603 Msa0008960:CDS 30.0%
!! GTTCTAGTTCTTGAACTTAT+GGG + chr1_1:13046585-13046604 Msa0008960:CDS 30.0%
!! GGTAATCATTGATTCATCTA+TGG + chr1_1:13046686-13046705 Msa0008960:intron 30.0%
AAAGGAAAAGATGCATTCAA+CGG - chr1_1:13046713-13046732 None:intergenic 30.0%
GCAAGTTTGATGTAAAAAGA+GGG - chr1_1:13046810-13046829 None:intergenic 30.0%
TGCAAGTTTGATGTAAAAAG+AGG - chr1_1:13046811-13046830 None:intergenic 30.0%
TTACATCAAACTTGCATCAA+CGG + chr1_1:13046815-13046834 Msa0008960:intron 30.0%
! AGCCTGTTTGATTTACTTAT+TGG - chr1_1:13047112-13047131 None:intergenic 30.0%
! TTCTTTTATAACAGCTTACG+AGG + chr1_1:13047147-13047166 Msa0008960:intron 30.0%
! GATAGAGTATTTACATTCCA+AGG + chr1_1:13047169-13047188 Msa0008960:CDS 30.0%
AAACCGGATAACTTTCTTAT+GGG + chr1_1:13047212-13047231 Msa0008960:CDS 30.0%
ATAACTTTCTTATGGGTCTT+GGG + chr1_1:13047219-13047238 Msa0008960:CDS 30.0%
!! CAGGTTTGTATGATTGATTT+TGG + chr1_1:13047349-13047368 Msa0008960:intron 30.0%
TGTTTGATCTCTTCTTGATA+TGG + chr1_1:13047455-13047474 Msa0008960:intron 30.0%
! TGACAGAAAAGCTGTTATTT+AGG - chr1_1:13047528-13047547 None:intergenic 30.0%
AAGTCACTAAGAATGAATCA+AGG - chr1_1:13047631-13047650 None:intergenic 30.0%
ATAGATAGCTGAATTCAAAG+TGG - chr1_1:13047662-13047681 None:intergenic 30.0%
! AGTTAAGTTTTTGTTCTCTC+TGG - chr1_1:13047727-13047746 None:intergenic 30.0%
AGAGAGAACAAAAACTTAAC+TGG + chr1_1:13047726-13047745 Msa0008960:intron 30.0%
AAATCGAGAGTGAAAATTGT+AGG - chr1_1:13047848-13047867 None:intergenic 30.0%
! ACAATTTTCACTCTCGATTT+TGG + chr1_1:13047848-13047867 Msa0008960:intron 30.0%
AAACGTTAGACTTGACTATT+TGG + chr1_1:13048034-13048053 Msa0008960:intron 30.0%
!! TTCATATTTTTGCATTCTGG+TGG - chr1_1:13048100-13048119 None:intergenic 30.0%
TACATATGTTTAATACCGGA+GGG - chr1_1:13048192-13048211 None:intergenic 30.0%
TTACATATGTTTAATACCGG+AGG - chr1_1:13048193-13048212 None:intergenic 30.0%
ACAACGAATTTCTTGTTCTT+AGG + chr1_1:13048251-13048270 Msa0008960:intron 30.0%
! TTTCGAGGATTTTCAATTTC+AGG + chr1_1:13048464-13048483 Msa0008960:intron 30.0%
ATCGTGAGTATCAAACAATT+TGG - chr1_1:13048522-13048541 None:intergenic 30.0%
TTCCTAAATTTATGTTTGGC+AGG + chr1_1:13048571-13048590 Msa0008960:intron 30.0%
ATCCTGCCAAACATAAATTT+AGG - chr1_1:13048576-13048595 None:intergenic 30.0%
! ATGCTGACTATTTATATGAC+TGG + chr1_1:13048599-13048618 Msa0008960:CDS 30.0%
!!! CTGGACGATTTTAAAATATC+AGG + chr1_1:13048618-13048637 Msa0008960:CDS 30.0%
ATTTCCCGTTTACAATTTGT+AGG + chr1_1:13048853-13048872 Msa0008960:intron 30.0%
!! TACTGATTTACCTATTTCCA+CGG + chr1_1:13049292-13049311 Msa0008960:CDS 30.0%
! GTTGGAGGAAAGTATAGAAT+TGG + chr1_1:13045593-13045612 Msa0008960:CDS 35.0%
! GAGGAAAGTATAGAATTGGT+AGG + chr1_1:13045597-13045616 Msa0008960:CDS 35.0%
ATTGGTAGGAAAATTGGTAG+TGG + chr1_1:13045611-13045630 Msa0008960:CDS 35.0%
CTATGAATTACAAATGCTCC+TGG + chr1_1:13045936-13045955 Msa0008960:intron 35.0%
AATGTGTTCGAGAATATCGA+AGG - chr1_1:13046086-13046105 None:intergenic 35.0%
ACAACCACAACTACTATATG+AGG + chr1_1:13046376-13046395 Msa0008960:CDS 35.0%
TTTGCCTCATATAGTAGTTG+TGG - chr1_1:13046383-13046402 None:intergenic 35.0%
GTGGTATTCCAAGAATGAAA+TGG + chr1_1:13046538-13046557 Msa0008960:CDS 35.0%
GTACCAAACCATTTCATTCT+TGG - chr1_1:13046549-13046568 None:intergenic 35.0%
!! ATGAAATGGTTTGGTACTGA+TGG + chr1_1:13046552-13046571 Msa0008960:CDS 35.0%
! TGGGAAGTTTTCGCTAAAAT+CGG + chr1_1:13046641-13046660 Msa0008960:CDS 35.0%
!! GCTAAAATCGGTTTTGATGT+TGG + chr1_1:13046653-13046672 Msa0008960:CDS 35.0%
ACTACACAGAGATATCAAAC+CGG + chr1_1:13047196-13047215 Msa0008960:CDS 35.0%
CAAACCGGATAACTTTCTTA+TGG + chr1_1:13047211-13047230 Msa0008960:CDS 35.0%
AGACCCATAAGAAAGTTATC+CGG - chr1_1:13047218-13047237 None:intergenic 35.0%
GATAACTTTCTTATGGGTCT+TGG + chr1_1:13047218-13047237 Msa0008960:CDS 35.0%
TTGGACTTTCAAAAGGATAC+AGG + chr1_1:13047368-13047387 Msa0008960:CDS 35.0%
TGGACTTTCAAAAGGATACA+GGG + chr1_1:13047369-13047388 Msa0008960:CDS 35.0%
AGCAATACTCACAAAGGAAT+TGG + chr1_1:13047768-13047787 Msa0008960:CDS 35.0%
AGCAACATCTTTATGATGCA+TGG - chr1_1:13047982-13048001 None:intergenic 35.0%
AAAGTAAGAAGCAAACTCCA+CGG - chr1_1:13048295-13048314 None:intergenic 35.0%
TTTGATCAACGACCAGATTA+TGG + chr1_1:13048336-13048355 Msa0008960:CDS 35.0%
CGCTTCAAATATCCATAATC+TGG - chr1_1:13048351-13048370 None:intergenic 35.0%
AAGTGAACAATTCACGAAAC+AGG - chr1_1:13048374-13048393 None:intergenic 35.0%
CGTGAATTGTTCACTTCTAA+AGG + chr1_1:13048378-13048397 Msa0008960:CDS 35.0%
! TAGCAACAGCTTGTTTAAGA+TGG + chr1_1:13048427-13048446 Msa0008960:intron 35.0%
!! GCAATTTACATGTTGTTTCG+AGG + chr1_1:13048449-13048468 Msa0008960:intron 35.0%
TCAGGAGATTCAACAGATAA+AGG + chr1_1:13048636-13048655 Msa0008960:CDS 35.0%
TGGAGCCTACAAATTGTAAA+CGG - chr1_1:13048861-13048880 None:intergenic 35.0%
! TCGGTATAGATTTTCGGTTT+TGG - chr1_1:13049075-13049094 None:intergenic 35.0%
TTACAAATGCTCCTGGGATT+AGG + chr1_1:13045943-13045962 Msa0008960:intron 40.0%
! TCTTTTCGGTAGTAGATGGA+TGG + chr1_1:13046178-13046197 Msa0008960:intron 40.0%
ACCTGCTTTACTACTGTAGT+GGG + chr1_1:13046622-13046641 Msa0008960:CDS 40.0%
TTTGATGTTGGCCGATCAAA+TGG + chr1_1:13046665-13046684 Msa0008960:CDS 40.0%
ATCTCTGTGTAGTAATCCCT+TGG - chr1_1:13047189-13047208 None:intergenic 40.0%
TCTTGGGAAGAAAGCAAATC+AGG + chr1_1:13047235-13047254 Msa0008960:CDS 40.0%
GGGATATGCTTGTAACTGAT+AGG - chr1_1:13047397-13047416 None:intergenic 40.0%
GTTACAAGCATATCCCTTAC+AGG + chr1_1:13047401-13047420 Msa0008960:CDS 40.0%
CTCTCTGGATGAGTTTATCA+AGG - chr1_1:13047712-13047731 None:intergenic 40.0%
GCAAGTAGCAATACTCACAA+AGG + chr1_1:13047762-13047781 Msa0008960:CDS 40.0%
! AGAGATGATTTGGAGTCTCT+TGG + chr1_1:13047896-13047915 Msa0008960:CDS 40.0%
! ATGTTGCTTGTGACTCTCAA+CGG + chr1_1:13047994-13048013 Msa0008960:intron 40.0%
!! TGTTGCATTTTAGCCTTCCT+TGG + chr1_1:13048058-13048077 Msa0008960:intron 40.0%
GAAGTTAAACACTCCCATTG+AGG + chr1_1:13048134-13048153 Msa0008960:CDS 40.0%
AAGTAAGAAGCAAACTCCAC+GGG - chr1_1:13048294-13048313 None:intergenic 40.0%
GTTGATCAAATGTCAAGGAG+CGG - chr1_1:13048326-13048345 None:intergenic 40.0%
TGGTCGTTGATCAAATGTCA+AGG - chr1_1:13048331-13048350 None:intergenic 40.0%
! AACTTTGGTCACCCTTTTCA+TGG + chr1_1:13048732-13048751 Msa0008960:intron 40.0%
GGAGCCTACAAATTGTAAAC+GGG - chr1_1:13048860-13048879 None:intergenic 40.0%
! AGTGTCATTAGAACATGCTC+TGG - chr1_1:13049009-13049028 None:intergenic 40.0%
! GGACGTTCGGTATAGATTTT+CGG - chr1_1:13049081-13049100 None:intergenic 40.0%
ACGTGTTTGTATGAAGCTCA+GGG + chr1_1:13049101-13049120 Msa0008960:CDS 40.0%
AATAACTTCAGCATGCAGAG+AGG - chr1_1:13049179-13049198 None:intergenic 40.0%
CCCATTCAAGTGAGTTACTT+CGG - chr1_1:13049249-13049268 None:intergenic 40.0%
CCGAAGTAACTCACTTGAAT+GGG + chr1_1:13049246-13049265 Msa0008960:intron 40.0%
TTAATCCCTAACACGTCATC+CGG - chr1_1:13049371-13049390 None:intergenic 40.0%
GACGTGTTAGGGATTAAATG+TGG + chr1_1:13049374-13049393 Msa0008960:CDS 40.0%
TGTTGTGACTTCTGAGCTTG+TGG + chr1_1:13045745-13045764 Msa0008960:CDS 45.0%
TGAGCTTGTGGCCATTAAGA+AGG + chr1_1:13045757-13045776 Msa0008960:CDS 45.0%
TTCTTAGGATGCCTAATCCC+AGG - chr1_1:13045957-13045976 None:intergenic 45.0%
GTTGTCAGACATGTGTTGCA+CGG - chr1_1:13046016-13046035 None:intergenic 45.0%
TAAAGCAGGTCATCGAGACT+CGG - chr1_1:13046612-13046631 None:intergenic 45.0%
GACCTGCTTTACTACTGTAG+TGG + chr1_1:13046621-13046640 Msa0008960:CDS 45.0%
TCCCACTACAGTAGTAAAGC+AGG - chr1_1:13046626-13046645 None:intergenic 45.0%
AAGCTATCTGGGAGAGCTTA+TGG + chr1_1:13047015-13047034 Msa0008960:intron 45.0%
GAGACTCCAAATCATCTCTG+CGG - chr1_1:13047895-13047914 None:intergenic 45.0%
! TCAACGGTGCACGGTTATTT+TGG + chr1_1:13048010-13048029 Msa0008960:intron 45.0%
!! CATTTTAGCCTTCCTTGGCA+AGG + chr1_1:13048063-13048082 Msa0008960:intron 45.0%
AACACTCCCATTGAGGTATG+CGG + chr1_1:13048141-13048160 Msa0008960:intron 45.0%
CATGATCCGCATACCTCAAT+GGG - chr1_1:13048150-13048169 None:intergenic 45.0%
ACATGATCCGCATACCTCAA+TGG - chr1_1:13048151-13048170 None:intergenic 45.0%
TGGTTCAATACTGGTAGGCA+CGG - chr1_1:13048888-13048907 None:intergenic 45.0%
! TCCTCTGGTTCAATACTGGT+AGG - chr1_1:13048893-13048912 None:intergenic 45.0%
! CACATCCTCTGGTTCAATAC+TGG - chr1_1:13048897-13048916 None:intergenic 45.0%
! CAGTATTGAACCAGAGGATG+TGG + chr1_1:13048895-13048914 Msa0008960:CDS 45.0%
CATACAAACACGTGGACGTT+CGG - chr1_1:13049094-13049113 None:intergenic 45.0%
CTGAGCTTCATACAAACACG+TGG - chr1_1:13049102-13049121 None:intergenic 45.0%
CACGTGTTTGTATGAAGCTC+AGG + chr1_1:13049100-13049119 Msa0008960:CDS 45.0%
GCCGAAGTAACTCACTTGAA+TGG + chr1_1:13049245-13049264 Msa0008960:intron 45.0%
TATTTCCACGGTCATGCCTA+CGG + chr1_1:13049304-13049323 Msa0008960:CDS 45.0%
!!! GGTTTTGGAACATCTTCCGT+AGG - chr1_1:13049323-13049342 None:intergenic 45.0%
TCCAAAACCAGAAACGACTG+TGG + chr1_1:13049334-13049353 Msa0008960:CDS 45.0%
!!! TCCACAGTCGTTTCTGGTTT+TGG - chr1_1:13049338-13049357 None:intergenic 45.0%
TAATCCCTAACACGTCATCC+GGG - chr1_1:13049370-13049389 None:intergenic 45.0%
ATGTGGTGCTTCTGATGACT+TGG + chr1_1:13049391-13049410 Msa0008960:CDS 45.0%
AAAGCAGGTCATCGAGACTC+GGG - chr1_1:13046611-13046630 None:intergenic 50.0%
GCAAAGCCGCAGAGATGATT+TGG + chr1_1:13047886-13047905 Msa0008960:CDS 50.0%
TTGTGACTCTCAACGGTGCA+CGG + chr1_1:13048001-13048020 Msa0008960:intron 50.0%
ACTTTGCAAGTCATGTCCCG+TGG + chr1_1:13048275-13048294 Msa0008960:CDS 50.0%
! GCCTACCAGTATTGAACCAG+AGG + chr1_1:13048889-13048908 Msa0008960:CDS 50.0%
GTATGCTCATCCACATCCTC+TGG - chr1_1:13048908-13048927 None:intergenic 50.0%
GAGGATGTGGATGAGCATAC+AGG + chr1_1:13048908-13048927 Msa0008960:CDS 50.0%
GTAGGCATGACCGTGGAAAT+AGG - chr1_1:13049305-13049324 None:intergenic 50.0%
GAGGTTTCCACAGTCGTTTC+TGG - chr1_1:13049344-13049363 None:intergenic 50.0%
GACTGTGGAAACCTCAAACC+CGG + chr1_1:13049349-13049368 Msa0008960:CDS 50.0%
TAACACGTCATCCGGGTTTG+AGG - chr1_1:13049363-13049382 None:intergenic 50.0%
TCAAACCCGGATGACGTGTT+AGG + chr1_1:13049362-13049381 Msa0008960:CDS 50.0%
CAAACCCGGATGACGTGTTA+GGG + chr1_1:13049363-13049382 Msa0008960:CDS 50.0%
CTTGCAGACCTTGCCAAGGA+AGG - chr1_1:13048074-13048093 None:intergenic 55.0%
ATACTGGTAGGCACGGCAAC+TGG - chr1_1:13048881-13048900 None:intergenic 55.0%
ATCTTCCGTAGGCATGACCG+TGG - chr1_1:13049312-13049331 None:intergenic 55.0%
GATGGAACTCGGCGTAGTGA+AGG - chr1_1:13049419-13049438 None:intergenic 55.0%
GCAGCTTGCAGACCTTGCCA+AGG - chr1_1:13048078-13048097 None:intergenic 60.0%
! CGGAGGGAGTACGTAGCAAG+GGG - chr1_1:13048176-13048195 None:intergenic 60.0%
! CCGGAGGGAGTACGTAGCAA+GGG - chr1_1:13048177-13048196 None:intergenic 60.0%
CCCTTGCTACGTACTCCCTC+CGG + chr1_1:13048174-13048193 Msa0008960:intron 60.0%
! ACCGGAGGGAGTACGTAGCA+AGG - chr1_1:13048178-13048197 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 13045581 13049448 13045581 ID=Msa0008960;Name=Msa0008960
chr1_1 mRNA 13045581 13049448 13045581 ID=Msa0008960-mRNA-1;Parent=Msa0008960;Name=Msa0008960-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.53|0.42|1|1|1|14|0|423
chr1_1 exon 13045581 13045656 13045581 ID=Msa0008960-mRNA-1:exon:4899;Parent=Msa0008960-mRNA-1
chr1_1 exon 13045738 13045778 13045738 ID=Msa0008960-mRNA-1:exon:4900;Parent=Msa0008960-mRNA-1
chr1_1 exon 13046359 13046428 13046359 ID=Msa0008960-mRNA-1:exon:4901;Parent=Msa0008960-mRNA-1
chr1_1 exon 13046538 13046686 13046538 ID=Msa0008960-mRNA-1:exon:4902;Parent=Msa0008960-mRNA-1
chr1_1 exon 13047161 13047256 13047161 ID=Msa0008960-mRNA-1:exon:4903;Parent=Msa0008960-mRNA-1
chr1_1 exon 13047352 13047422 13047352 ID=Msa0008960-mRNA-1:exon:4904;Parent=Msa0008960-mRNA-1
chr1_1 exon 13047728 13047789 13047728 ID=Msa0008960-mRNA-1:exon:4905;Parent=Msa0008960-mRNA-1
chr1_1 exon 13047885 13047948 13047885 ID=Msa0008960-mRNA-1:exon:4906;Parent=Msa0008960-mRNA-1
chr1_1 exon 13048071 13048155 13048071 ID=Msa0008960-mRNA-1:exon:4907;Parent=Msa0008960-mRNA-1
chr1_1 exon 13048273 13048399 13048273 ID=Msa0008960-mRNA-1:exon:4908;Parent=Msa0008960-mRNA-1
chr1_1 exon 13048593 13048675 13048593 ID=Msa0008960-mRNA-1:exon:4909;Parent=Msa0008960-mRNA-1
chr1_1 exon 13048875 13048929 13048875 ID=Msa0008960-mRNA-1:exon:4910;Parent=Msa0008960-mRNA-1
chr1_1 exon 13049043 13049170 13049043 ID=Msa0008960-mRNA-1:exon:4911;Parent=Msa0008960-mRNA-1
chr1_1 exon 13049284 13049448 13049284 ID=Msa0008960-mRNA-1:exon:4912;Parent=Msa0008960-mRNA-1
chr1_1 CDS 13045581 13045656 13045581 ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1
chr1_1 CDS 13045738 13045778 13045738 ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1
chr1_1 CDS 13046359 13046428 13046359 ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1
chr1_1 CDS 13046538 13046686 13046538 ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1
chr1_1 CDS 13047161 13047256 13047161 ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1
chr1_1 CDS 13047352 13047422 13047352 ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1
chr1_1 CDS 13047728 13047789 13047728 ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1
chr1_1 CDS 13047885 13047948 13047885 ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1
chr1_1 CDS 13048071 13048155 13048071 ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1
chr1_1 CDS 13048273 13048399 13048273 ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1
chr1_1 CDS 13048593 13048675 13048593 ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1
chr1_1 CDS 13048875 13048929 13048875 ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1
chr1_1 CDS 13049043 13049170 13049043 ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1
chr1_1 CDS 13049284 13049448 13049284 ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1
Gene Sequence

>Msa0008960

ATGGAAAAGGTTGTTGGAGGAAAGTATAGAATTGGTAGGAAAATTGGTAGTGGATCATTTGGTGAAATTTATATTGGTGCACATGTTGTGACTTCTGAGCTTGTGGCCATTAAGAAGGAGAAGAAGAAAACTCAACAACCACAACTACTATATGAGGCAAAGTTATATAACATTCTTAAAGGAGGAAGTGGTATTCCAAGAATGAAATGGTTTGGTACTGATGGAGACTATAATGTTCTAGTTCTTGAACTTATGGGCCCGAGTCTCGATGACCTGCTTTACTACTGTAGTGGGAAGTTTTCGCTAAAATCGGTTTTGATGTTGGCCGATCAAATGCTTACGAGGATAGAGTATTTACATTCCAAGGGATTACTACACAGAGATATCAAACCGGATAACTTTCTTATGGGTCTTGGGAAGAAAGCAAATCAGGTTTGTATGATTGATTTTGGACTTTCAAAAGGATACAGGGATCCTATCAGTTACAAGCATATCCCTTACAGAGAGAACAAAAACTTAACTGGAACTGCACGTTATGCAAGTAGCAATACTCACAAAGGAATTGAGCAAAGCCGCAGAGATGATTTGGAGTCTCTTGGCTATGTTCTTTTGTACTTTTTAAGAGGAAGCCTTCCTTGGCAAGGTCTGCAAGCTGCCACCAGAATGCAAAAATATGAAAAAATATGCGAAACGAAGTTAAACACTCCCATTGAGGTACTTTGCAAGTCATGTCCCGTGGAGTTTGCTTCTTACTTTCATTATTGCCGCTCCTTGACATTTGATCAACGACCAGATTATGGATATTTGAAGCGCCTGTTTCGTGAATTGTTCACTTCTAAAGGATATGATGCTGACTATTTATATGACTGGACGATTTTAAAATATCAGGAGATTCAACAGATAAAGGCACAAAATCAATCAATAGCTCCAGTTGCCGTGCCTACCAGTATTGAACCAGAGGATGTGGATGAGCATACAGAATACAATGATTGTACTCAAAATGCTGTGCCAAAACCGAAAATCTATACCGAACGTCCACGTGTTTGTATGAAGCTCAGGGTAGCTAATGTCGATAATCTTGATGATGAGATTCAAACAGATAAACAAAATGTGAATACTGATTTACCTATTTCCACGGTCATGCCTACGGAAGATGTTCCAAAACCAGAAACGACTGTGGAAACCTCAAACCCGGATGACGTGTTAGGGATTAAATGTGGTGCTTCTGATGACTTGGTTCCTTCACTACGCCGAGTTCCATCCATCAAGTAG

Protein sequence

>Msa0008960

MEKVVGGKYRIGRKIGSGSFGEIYIGAHVVTSELVAIKKEKKKTQQPQLLYEAKLYNILKGGSGIPRMKWFGTDGDYNVLVLELMGPSLDDLLYYCSGKFSLKSVLMLADQMLTRIEYLHSKGLLHRDIKPDNFLMGLGKKANQVCMIDFGLSKGYRDPISYKHIPYRENKNLTGTARYASSNTHKGIEQSRRDDLESLGYVLLYFLRGSLPWQGLQAATRMQKYEKICETKLNTPIEVLCKSCPVEFASYFHYCRSLTFDQRPDYGYLKRLFRELFTSKGYDADYLYDWTILKYQEIQQIKAQNQSIAPVAVPTSIEPEDVDEHTEYNDCTQNAVPKPKIYTERPRVCMKLRVANVDNLDDEIQTDKQNVNTDLPISTVMPTEDVPKPETTVETSNPDDVLGIKCGASDDLVPSLRRVPSIK*