Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0008960 | sp|Q8LPI7|CKL4_ARATH | 59.615 | 416 | 148 | 3 | 1 | 408 | 1 | 404 | 3.60e-179 | 508 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0008960 | Msa0036250 | -0.830727 | 2.495185e-55 | -8.615850e-47 |
Msa0008960 | Msa0037280 | 0.808635 | 2.811019e-50 | -8.615850e-47 |
Msa0008960 | Msa0074860 | -0.802647 | 5.079635e-49 | -8.615850e-47 |
Msa0008960 | Msa0076100 | -0.804485 | 2.112217e-49 | -8.615850e-47 |
Msa0008960 | Msa0087550 | 0.814566 | 1.443666e-51 | -8.615850e-47 |
Msa0008960 | Msa0134270 | 0.814081 | 1.847203e-51 | -8.615850e-47 |
Msa0008960 | Msa0139910 | 0.826853 | 2.159542e-54 | -8.615850e-47 |
Msa0008960 | Msa0147960 | -0.801333 | 9.461512e-49 | -8.615850e-47 |
Msa0008960 | Msa0158270 | 0.820745 | 5.830506e-53 | -8.615850e-47 |
Msa0008960 | Msa0180820 | 0.803598 | 3.229014e-49 | -8.615850e-47 |
Msa0008960 | Msa0181100 | 0.801492 | 8.777942e-49 | -8.615850e-47 |
Msa0008960 | Msa0184800 | -0.803471 | 3.432061e-49 | -8.615850e-47 |
Msa0008960 | Msa0207150 | -0.813054 | 3.108343e-51 | -8.615850e-47 |
Msa0008960 | Msa0246510 | -0.805425 | 1.343474e-49 | -8.615850e-47 |
Msa0008960 | Msa0368620 | 0.817251 | 3.633829e-52 | -8.615850e-47 |
Msa0008960 | Msa0383110 | -0.809461 | 1.870911e-50 | -8.615850e-47 |
Msa0008960 | Msa0389710 | 0.814390 | 1.578411e-51 | -8.615850e-47 |
Msa0008960 | Msa0416040 | 0.808359 | 3.220053e-50 | -8.615850e-47 |
Msa0008960 | Msa0427560 | 0.805240 | 1.469016e-49 | -8.615850e-47 |
Msa0008960 | Msa0480260 | 0.816715 | 4.792717e-52 | -8.615850e-47 |
Msa0008960 | Msa0508160 | 0.813146 | 2.967568e-51 | -8.615850e-47 |
Msa0008960 | Msa0527210 | -0.802222 | 6.216381e-49 | -8.615850e-47 |
Msa0008960 | Msa0572730 | -0.812510 | 4.088434e-51 | -8.615850e-47 |
Msa0008960 | Msa0585720 | -0.803751 | 3.002456e-49 | -8.615850e-47 |
Msa0008960 | Msa0660650 | 0.813256 | 2.807005e-51 | -8.615850e-47 |
Msa0008960 | Msa0663580 | -0.803423 | 3.511818e-49 | -8.615850e-47 |
Msa0008960 | Msa0666380 | -0.807250 | 5.541468e-50 | -8.615850e-47 |
Msa0008960 | Msa0692710 | -0.810540 | 1.095884e-50 | -8.615850e-47 |
Msa0008960 | Msa0719160 | -0.809693 | 1.667682e-50 | -8.615850e-47 |
Msa0008960 | Msa0727230 | 0.813274 | 2.781035e-51 | -8.615850e-47 |
Msa0008960 | Msa1045870 | 0.832605 | 8.591316e-56 | -8.615850e-47 |
Msa0008960 | Msa1045960 | 0.838669 | 2.506989e-57 | -8.615850e-47 |
Msa0008960 | Msa1046880 | 0.828601 | 8.209425e-55 | -8.615850e-47 |
Msa0008960 | Msa1087420 | 0.835958 | 1.239269e-56 | -8.615850e-47 |
Msa0008960 | Msa1143820 | -0.806943 | 6.434615e-50 | -8.615850e-47 |
Msa0008960 | Msa1185270 | 0.803153 | 3.992757e-49 | -8.615850e-47 |
Msa0008960 | Msa1228600 | -0.805406 | 1.355412e-49 | -8.615850e-47 |
Msa0008960 | Msa1239210 | 0.804918 | 1.715168e-49 | -8.615850e-47 |
Msa0008960 | Msa1301610 | -0.811950 | 5.417895e-51 | -8.615850e-47 |
Msa0008960 | Msa1350590 | -0.801597 | 8.352905e-49 | -8.615850e-47 |
Msa0008960 | Msa1371540 | -0.800325 | 1.519538e-48 | -8.615850e-47 |
Msa0008960 | Msa1377980 | -0.818370 | 2.031109e-52 | -8.615850e-47 |
Msa0008960 | Msa1398150 | -0.801605 | 8.323056e-49 | -8.615850e-47 |
Msa0008960 | Msa1408280 | -0.816589 | 5.114962e-52 | -8.615850e-47 |
Msa0008960 | Msa1412270 | -0.810383 | 1.184455e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0008960 | MtrunA17_Chr1g0146151 | 97.156 | 422 | 12 | 0 | 1 | 422 | 1 | 422 | 0.0 | 851 |
Msa0008960 | MtrunA17_Chr3g0140071 | 62.558 | 430 | 154 | 2 | 1 | 423 | 1 | 430 | 0.0 | 536 |
Msa0008960 | MtrunA17_Chr6g0486611 | 71.914 | 324 | 90 | 1 | 1 | 323 | 1 | 324 | 2.13e-177 | 501 |
Msa0008960 | MtrunA17_Chr8g0390211 | 59.441 | 429 | 163 | 5 | 1 | 423 | 1 | 424 | 6.28e-177 | 500 |
Msa0008960 | MtrunA17_Chr4g0071031 | 67.173 | 329 | 105 | 1 | 1 | 326 | 1 | 329 | 7.36e-167 | 476 |
Msa0008960 | MtrunA17_Chr2g0329981 | 67.391 | 322 | 105 | 0 | 1 | 322 | 1 | 322 | 2.09e-165 | 473 |
Msa0008960 | MtrunA17_Chr2g0299661 | 65.653 | 329 | 110 | 1 | 1 | 326 | 1 | 329 | 5.25e-164 | 469 |
Msa0008960 | MtrunA17_Chr1g0166821 | 68.153 | 314 | 100 | 0 | 1 | 314 | 2 | 315 | 9.00e-164 | 468 |
Msa0008960 | MtrunA17_Chr1g0183631 | 70.169 | 295 | 88 | 0 | 1 | 295 | 1 | 295 | 2.36e-162 | 464 |
Msa0008960 | MtrunA17_Chr1g0187571 | 66.242 | 314 | 106 | 0 | 1 | 314 | 2 | 315 | 8.46e-161 | 461 |
Msa0008960 | MtrunA17_Chr8g0342821 | 66.144 | 319 | 107 | 1 | 1 | 319 | 1 | 318 | 2.78e-160 | 460 |
Msa0008960 | MtrunA17_Chr7g0261501 | 62.059 | 340 | 125 | 1 | 1 | 336 | 1 | 340 | 1.19e-158 | 455 |
Msa0008960 | MtrunA17_Chr1g0167261 | 60.559 | 322 | 118 | 2 | 1 | 320 | 2 | 316 | 2.92e-141 | 407 |
Msa0008960 | MtrunA17_Chr1g0146301 | 37.809 | 283 | 162 | 7 | 2 | 273 | 114 | 393 | 2.95e-54 | 191 |
Msa0008960 | MtrunA17_Chr1g0213321 | 37.500 | 280 | 161 | 6 | 5 | 273 | 113 | 389 | 4.38e-54 | 191 |
Msa0008960 | MtrunA17_Chr7g0214531 | 35.439 | 285 | 165 | 6 | 5 | 273 | 31 | 312 | 4.05e-53 | 187 |
Msa0008960 | MtrunA17_Chr3g0140431 | 36.749 | 283 | 165 | 7 | 2 | 273 | 28 | 307 | 1.31e-52 | 185 |
Msa0008960 | MtrunA17_Chr7g0253211 | 35.231 | 281 | 166 | 5 | 9 | 276 | 324 | 601 | 1.06e-48 | 177 |
Msa0008960 | MtrunA17_Chr8g0340491 | 34.043 | 282 | 164 | 6 | 9 | 273 | 128 | 404 | 3.74e-46 | 169 |
Msa0008960 | MtrunA17_Chr5g0405421 | 27.854 | 219 | 142 | 5 | 2 | 213 | 92 | 301 | 1.71e-14 | 75.5 |
Msa0008960 | MtrunA17_Chr8g0387671 | 29.717 | 212 | 131 | 7 | 9 | 213 | 66 | 266 | 1.15e-13 | 72.8 |
Msa0008960 | MtrunA17_Chr5g0432471 | 27.016 | 248 | 146 | 9 | 3 | 236 | 6 | 232 | 1.19e-13 | 72.4 |
Msa0008960 | MtrunA17_Chr8g0374701 | 26.106 | 226 | 144 | 5 | 1 | 213 | 117 | 332 | 1.51e-13 | 72.4 |
Msa0008960 | MtrunA17_Chr5g0397101 | 28.182 | 220 | 132 | 6 | 5 | 213 | 63 | 267 | 1.83e-13 | 72.0 |
Msa0008960 | MtrunA17_Chr4g0075541 | 27.881 | 269 | 164 | 9 | 11 | 269 | 89 | 337 | 2.00e-13 | 71.2 |
Msa0008960 | MtrunA17_Chr0c02g0489761 | 30.000 | 220 | 128 | 8 | 5 | 213 | 74 | 278 | 2.93e-13 | 71.6 |
Msa0008960 | MtrunA17_Chr3g0107011 | 27.500 | 240 | 153 | 9 | 4 | 236 | 9 | 234 | 3.75e-13 | 70.9 |
Msa0008960 | MtrunA17_Chr4g0047201 | 25.592 | 211 | 135 | 7 | 77 | 284 | 276 | 467 | 2.24e-12 | 68.6 |
Msa0008960 | MtrunA17_Chr7g0274941 | 25.000 | 236 | 158 | 5 | 8 | 237 | 15 | 237 | 2.45e-12 | 67.4 |
Msa0008960 | MtrunA17_Chr5g0428031 | 26.638 | 229 | 147 | 7 | 7 | 227 | 7 | 222 | 2.64e-12 | 68.2 |
Msa0008960 | MtrunA17_Chr1g0203881 | 26.582 | 237 | 155 | 7 | 8 | 238 | 40 | 263 | 3.34e-12 | 68.2 |
Msa0008960 | MtrunA17_Chr7g0244621 | 26.897 | 290 | 166 | 14 | 11 | 278 | 47 | 312 | 4.43e-12 | 67.0 |
Msa0008960 | MtrunA17_Chr7g0276111 | 25.339 | 221 | 145 | 5 | 3 | 213 | 138 | 348 | 5.27e-12 | 67.8 |
Msa0008960 | MtrunA17_Chr7g0245031 | 26.496 | 234 | 150 | 7 | 9 | 236 | 148 | 365 | 6.88e-12 | 67.0 |
Msa0008960 | MtrunA17_Chr5g0402601 | 24.252 | 301 | 195 | 10 | 8 | 293 | 371 | 653 | 7.55e-12 | 67.4 |
Msa0008960 | MtrunA17_Chr8g0345801 | 27.068 | 266 | 166 | 10 | 1 | 258 | 8 | 253 | 1.71e-11 | 64.3 |
Msa0008960 | MtrunA17_Chr4g0072831 | 28.319 | 226 | 114 | 8 | 7 | 232 | 8 | 185 | 2.32e-11 | 64.7 |
Msa0008960 | MtrunA17_Chr2g0304111 | 29.279 | 222 | 128 | 11 | 6 | 214 | 20 | 225 | 2.36e-11 | 65.5 |
Msa0008960 | MtrunA17_Chr8g0385341 | 27.014 | 211 | 138 | 5 | 9 | 213 | 30 | 230 | 2.44e-11 | 65.5 |
Msa0008960 | MtrunA17_Chr4g0033371 | 29.586 | 169 | 109 | 4 | 8 | 167 | 71 | 238 | 3.28e-11 | 65.1 |
Msa0008960 | MtrunA17_Chr4g0045261 | 25.778 | 225 | 143 | 6 | 1 | 213 | 129 | 341 | 3.60e-11 | 65.1 |
Msa0008960 | MtrunA17_Chr7g0267771 | 25.822 | 213 | 142 | 5 | 9 | 215 | 88 | 290 | 3.85e-11 | 64.7 |
Msa0008960 | MtrunA17_Chr3g0140631 | 25.498 | 251 | 157 | 9 | 9 | 250 | 37 | 266 | 8.58e-11 | 62.8 |
Msa0008960 | MtrunA17_Chr3g0127571 | 25.561 | 223 | 142 | 7 | 3 | 213 | 132 | 342 | 9.72e-11 | 63.5 |
Msa0008960 | MtrunA17_Chr1g0201571 | 25.214 | 234 | 150 | 9 | 9 | 231 | 126 | 345 | 9.95e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0008960 | AT4G28860.1 | 59.615 | 416 | 148 | 3 | 1 | 408 | 1 | 404 | 3.66e-180 | 508 |
Msa0008960 | AT4G28880.3 | 57.895 | 418 | 164 | 4 | 1 | 413 | 1 | 411 | 2.88e-177 | 501 |
Msa0008960 | AT4G28880.2 | 57.895 | 418 | 164 | 4 | 1 | 413 | 1 | 411 | 2.88e-177 | 501 |
Msa0008960 | AT4G28880.1 | 57.895 | 418 | 164 | 4 | 1 | 413 | 1 | 411 | 2.88e-177 | 501 |
Msa0008960 | AT4G28880.4 | 57.895 | 418 | 164 | 4 | 1 | 413 | 1 | 411 | 2.88e-177 | 501 |
Msa0008960 | AT4G28860.2 | 64.208 | 366 | 119 | 2 | 1 | 366 | 1 | 354 | 1.80e-176 | 498 |
Msa0008960 | AT5G57015.1 | 68.354 | 316 | 100 | 0 | 1 | 316 | 1 | 316 | 9.52e-166 | 473 |
Msa0008960 | AT4G26100.1 | 55.831 | 403 | 172 | 3 | 1 | 403 | 1 | 397 | 1.65e-165 | 473 |
Msa0008960 | AT3G23340.1 | 55.779 | 398 | 171 | 2 | 1 | 396 | 1 | 395 | 1.72e-161 | 462 |
Msa0008960 | AT1G72710.1 | 65.839 | 322 | 109 | 1 | 1 | 322 | 1 | 321 | 1.64e-160 | 461 |
Msa0008960 | AT5G44100.1 | 68.792 | 298 | 93 | 0 | 1 | 298 | 1 | 298 | 2.62e-159 | 458 |
Msa0008960 | AT5G44100.2 | 68.792 | 298 | 93 | 0 | 1 | 298 | 1 | 298 | 2.62e-159 | 458 |
Msa0008960 | AT1G03930.1 | 67.450 | 298 | 97 | 0 | 1 | 298 | 1 | 298 | 2.68e-158 | 455 |
Msa0008960 | AT2G19470.1 | 54.591 | 403 | 168 | 3 | 1 | 403 | 1 | 388 | 1.24e-156 | 449 |
Msa0008960 | AT4G28540.1 | 66.780 | 295 | 98 | 0 | 1 | 295 | 5 | 299 | 2.42e-155 | 448 |
Msa0008960 | AT5G43320.1 | 67.114 | 298 | 98 | 0 | 1 | 298 | 1 | 298 | 7.29e-155 | 447 |
Msa0008960 | AT4G14340.1 | 59.420 | 345 | 140 | 0 | 1 | 345 | 7 | 351 | 9.56e-154 | 443 |
Msa0008960 | AT1G04440.1 | 66.443 | 298 | 100 | 0 | 1 | 298 | 1 | 298 | 2.33e-153 | 442 |
Msa0008960 | AT5G43320.2 | 60.714 | 336 | 132 | 0 | 1 | 336 | 1 | 336 | 2.49e-153 | 439 |
Msa0008960 | AT5G43320.3 | 60.714 | 336 | 132 | 0 | 1 | 336 | 1 | 336 | 2.49e-153 | 439 |
Msa0008960 | AT4G14340.2 | 61.963 | 326 | 124 | 0 | 1 | 326 | 7 | 332 | 8.13e-153 | 437 |
Msa0008960 | AT3G23340.2 | 52.513 | 398 | 170 | 3 | 1 | 396 | 1 | 381 | 5.87e-147 | 425 |
Msa0008960 | AT4G08800.1 | 57.718 | 298 | 94 | 2 | 1 | 298 | 1 | 266 | 1.39e-123 | 360 |
Msa0008960 | AT2G25760.2 | 36.786 | 280 | 162 | 4 | 9 | 273 | 107 | 386 | 3.81e-55 | 194 |
Msa0008960 | AT3G13670.1 | 35.640 | 289 | 167 | 6 | 5 | 277 | 131 | 416 | 1.06e-53 | 190 |
Msa0008960 | AT2G25760.1 | 36.786 | 280 | 159 | 5 | 9 | 273 | 107 | 383 | 1.35e-53 | 189 |
Msa0008960 | AT3G03940.1 | 35.461 | 282 | 166 | 5 | 9 | 277 | 140 | 418 | 2.30e-50 | 181 |
Msa0008960 | AT5G18190.2 | 35.106 | 282 | 167 | 5 | 9 | 277 | 130 | 408 | 3.97e-50 | 180 |
Msa0008960 | AT5G18190.1 | 35.106 | 282 | 167 | 5 | 9 | 277 | 130 | 408 | 3.97e-50 | 180 |
Msa0008960 | AT3G06030.1 | 28.571 | 245 | 144 | 8 | 8 | 237 | 67 | 295 | 1.73e-14 | 75.9 |
Msa0008960 | AT2G17890.1 | 28.169 | 213 | 137 | 5 | 8 | 213 | 107 | 310 | 2.26e-14 | 75.5 |
Msa0008960 | AT4G36070.2 | 27.982 | 218 | 140 | 6 | 8 | 217 | 70 | 278 | 2.31e-14 | 75.5 |
Msa0008960 | AT5G66210.5 | 28.302 | 212 | 136 | 5 | 9 | 213 | 62 | 264 | 3.29e-14 | 74.7 |
Msa0008960 | AT4G36070.1 | 27.982 | 218 | 140 | 6 | 8 | 217 | 70 | 278 | 3.29e-14 | 74.7 |
Msa0008960 | AT5G66210.3 | 28.302 | 212 | 136 | 5 | 9 | 213 | 62 | 264 | 3.48e-14 | 74.7 |
Msa0008960 | AT5G66210.6 | 28.302 | 212 | 136 | 5 | 9 | 213 | 62 | 264 | 3.82e-14 | 74.3 |
Msa0008960 | AT5G66210.4 | 28.302 | 212 | 136 | 5 | 9 | 213 | 62 | 264 | 3.82e-14 | 74.3 |
Msa0008960 | AT5G66210.1 | 28.302 | 212 | 136 | 5 | 9 | 213 | 62 | 264 | 5.72e-14 | 73.9 |
Msa0008960 | AT5G66210.2 | 28.302 | 212 | 136 | 5 | 9 | 213 | 62 | 264 | 5.72e-14 | 73.9 |
Msa0008960 | AT2G46700.1 | 27.354 | 223 | 138 | 7 | 3 | 213 | 137 | 347 | 1.16e-13 | 73.2 |
Msa0008960 | AT5G66850.1 | 27.039 | 233 | 147 | 7 | 5 | 224 | 342 | 564 | 1.87e-13 | 72.8 |
Msa0008960 | AT5G66850.2 | 27.039 | 233 | 147 | 7 | 5 | 224 | 342 | 564 | 2.08e-13 | 72.8 |
Msa0008960 | AT3G49370.1 | 27.854 | 219 | 138 | 6 | 7 | 215 | 140 | 348 | 3.14e-13 | 72.0 |
Msa0008960 | AT1G62400.1 | 28.090 | 267 | 162 | 9 | 11 | 267 | 88 | 334 | 4.77e-13 | 70.9 |
Msa0008960 | AT5G25110.1 | 25.726 | 241 | 158 | 8 | 3 | 236 | 37 | 263 | 6.42e-13 | 70.9 |
Msa0008960 | AT3G50530.1 | 26.009 | 223 | 145 | 5 | 1 | 213 | 140 | 352 | 1.14e-12 | 70.1 |
Msa0008960 | AT3G53930.2 | 24.627 | 268 | 175 | 6 | 5 | 254 | 16 | 274 | 1.38e-12 | 70.1 |
Msa0008960 | AT3G53930.1 | 24.627 | 268 | 175 | 6 | 5 | 254 | 16 | 274 | 1.48e-12 | 70.1 |
Msa0008960 | AT5G10930.1 | 25.620 | 242 | 158 | 8 | 3 | 236 | 6 | 233 | 1.65e-12 | 69.3 |
Msa0008960 | AT4G14580.1 | 27.511 | 229 | 134 | 9 | 2 | 213 | 10 | 223 | 1.77e-12 | 69.3 |
Msa0008960 | AT4G23650.1 | 30.876 | 217 | 126 | 8 | 9 | 215 | 78 | 280 | 1.87e-12 | 69.3 |
Msa0008960 | AT3G23000.1 | 26.068 | 234 | 152 | 8 | 3 | 227 | 19 | 240 | 3.89e-12 | 68.2 |
Msa0008960 | AT1G51660.1 | 25.882 | 255 | 156 | 10 | 12 | 255 | 82 | 314 | 5.23e-12 | 67.4 |
Msa0008960 | AT2G31500.1 | 28.111 | 217 | 130 | 7 | 8 | 213 | 65 | 266 | 5.48e-12 | 68.2 |
Msa0008960 | AT1G01140.3 | 26.141 | 241 | 150 | 10 | 7 | 236 | 17 | 240 | 6.78e-12 | 67.4 |
Msa0008960 | AT1G01140.1 | 26.141 | 241 | 150 | 10 | 7 | 236 | 17 | 240 | 9.16e-12 | 67.0 |
Msa0008960 | AT3G08720.1 | 25.000 | 232 | 155 | 6 | 9 | 236 | 140 | 356 | 9.37e-12 | 67.0 |
Msa0008960 | AT3G08720.3 | 25.000 | 232 | 155 | 6 | 9 | 236 | 140 | 356 | 9.37e-12 | 67.0 |
Msa0008960 | AT3G08720.4 | 25.000 | 232 | 155 | 6 | 9 | 236 | 140 | 356 | 9.37e-12 | 67.0 |
Msa0008960 | AT3G08720.2 | 25.000 | 232 | 155 | 6 | 9 | 236 | 140 | 356 | 9.37e-12 | 67.0 |
Msa0008960 | AT1G08650.2 | 27.236 | 246 | 146 | 9 | 8 | 240 | 14 | 239 | 1.24e-11 | 65.5 |
Msa0008960 | AT1G08650.1 | 26.446 | 242 | 153 | 7 | 8 | 240 | 14 | 239 | 1.29e-11 | 65.5 |
Msa0008960 | AT4G24400.1 | 25.200 | 250 | 156 | 8 | 7 | 249 | 7 | 232 | 1.76e-11 | 66.2 |
Msa0008960 | AT5G24430.1 | 27.397 | 219 | 139 | 7 | 7 | 215 | 141 | 349 | 2.01e-11 | 66.2 |
Msa0008960 | AT3G01090.2 | 30.047 | 213 | 127 | 9 | 9 | 213 | 42 | 240 | 2.60e-11 | 65.9 |
Msa0008960 | AT4G24400.2 | 25.200 | 250 | 156 | 8 | 7 | 249 | 7 | 232 | 2.72e-11 | 65.5 |
Msa0008960 | AT3G01090.3 | 30.047 | 213 | 127 | 9 | 9 | 213 | 19 | 217 | 2.87e-11 | 65.9 |
Msa0008960 | AT3G01090.1 | 30.047 | 213 | 127 | 9 | 9 | 213 | 19 | 217 | 2.87e-11 | 65.9 |
Msa0008960 | AT1G35670.1 | 27.586 | 232 | 149 | 7 | 9 | 234 | 26 | 244 | 3.18e-11 | 65.5 |
Msa0008960 | AT3G08730.1 | 25.630 | 238 | 157 | 7 | 4 | 236 | 128 | 350 | 3.21e-11 | 65.5 |
Msa0008960 | AT3G08730.2 | 25.630 | 238 | 157 | 7 | 4 | 236 | 128 | 350 | 3.21e-11 | 65.5 |
Msa0008960 | AT2G17530.2 | 31.973 | 147 | 88 | 4 | 2 | 136 | 31 | 177 | 3.60e-11 | 64.7 |
Msa0008960 | AT2G17530.1 | 31.973 | 147 | 88 | 4 | 2 | 136 | 31 | 177 | 3.61e-11 | 65.1 |
Msa0008960 | AT2G17530.3 | 31.973 | 147 | 88 | 4 | 2 | 136 | 31 | 177 | 3.61e-11 | 65.1 |
Msa0008960 | AT5G21326.1 | 26.104 | 249 | 140 | 10 | 7 | 236 | 11 | 234 | 3.70e-11 | 65.1 |
Msa0008960 | AT4G32830.1 | 26.582 | 237 | 144 | 9 | 9 | 236 | 31 | 246 | 3.96e-11 | 63.9 |
Msa0008960 | AT1G01140.2 | 27.686 | 242 | 147 | 12 | 7 | 236 | 17 | 242 | 4.23e-11 | 65.1 |
Msa0008960 | AT1G67580.1 | 27.848 | 237 | 143 | 8 | 14 | 240 | 411 | 629 | 5.05e-11 | 65.1 |
Msa0008960 | AT1G67580.2 | 27.848 | 237 | 143 | 8 | 14 | 240 | 411 | 629 | 5.05e-11 | 65.1 |
Msa0008960 | AT1G63700.1 | 26.695 | 236 | 135 | 9 | 6 | 224 | 397 | 611 | 6.09e-11 | 65.1 |
Msa0008960 | AT1G63700.2 | 26.695 | 236 | 135 | 9 | 6 | 224 | 397 | 611 | 6.09e-11 | 65.1 |
Msa0008960 | AT2G41860.1 | 26.415 | 212 | 140 | 6 | 8 | 213 | 53 | 254 | 9.15e-11 | 64.3 |
Find 96 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTCTAGTTCTTGAACTTA+TGG | 0.162372 | 1_1:+13046584 | Msa0008960:CDS |
GAGGTTTCCACAGTCGTTTC+TGG | 0.189583 | 1_1:-13049341 | None:intergenic |
TCCACAGTCGTTTCTGGTTT+TGG | 0.193952 | 1_1:-13049335 | None:intergenic |
GTACCAAACCATTTCATTCT+TGG | 0.227657 | 1_1:-13046546 | None:intergenic |
CATTAGACTAACCTTCTTAA+TGG | 0.235709 | 1_1:-13045768 | None:intergenic |
CAGGTTTGTATGATTGATTT+TGG | 0.244306 | 1_1:+13047349 | Msa0008960:intron |
CAAACCGGATAACTTTCTTA+TGG | 0.257400 | 1_1:+13047211 | Msa0008960:CDS |
TCATTTGGTGAAATTTATAT+TGG | 0.266055 | 1_1:+13045635 | Msa0008960:CDS |
TTTGATCAACGACCAGATTA+TGG | 0.266409 | 1_1:+13048336 | Msa0008960:CDS |
TATAGAATTGGTAGGAAAAT+TGG | 0.283963 | 1_1:+13045605 | Msa0008960:CDS |
GTTCTAGTTCTTGAACTTAT+GGG | 0.299967 | 1_1:+13046585 | Msa0008960:CDS |
AAGTTATATAACATTCTTAA+AGG | 0.300843 | 1_1:+13046401 | Msa0008960:CDS |
GCAAAGCCGCAGAGATGATT+TGG | 0.307778 | 1_1:+13047886 | Msa0008960:CDS |
AAACCGGATAACTTTCTTAT+GGG | 0.337171 | 1_1:+13047212 | Msa0008960:CDS |
CGTGAATTGTTCACTTCTAA+AGG | 0.349173 | 1_1:+13048378 | Msa0008960:CDS |
GATAACTTTCTTATGGGTCT+TGG | 0.366159 | 1_1:+13047218 | Msa0008960:CDS |
GTAGGCATGACCGTGGAAAT+AGG | 0.370390 | 1_1:-13049302 | None:intergenic |
GTTGGAGGAAAGTATAGAAT+TGG | 0.371829 | 1_1:+13045593 | Msa0008960:CDS |
GTTACAAGCATATCCCTTAC+AGG | 0.376749 | 1_1:+13047401 | Msa0008960:CDS |
TCAGGAGATTCAACAGATAA+AGG | 0.377164 | 1_1:+13048636 | Msa0008960:CDS |
CGCTTCAAATATCCATAATC+TGG | 0.378050 | 1_1:-13048348 | None:intergenic |
TCAAACCCGGATGACGTGTT+AGG | 0.378550 | 1_1:+13049362 | Msa0008960:CDS |
CACATCCTCTGGTTCAATAC+TGG | 0.381850 | 1_1:-13048894 | None:intergenic |
TAGAAAATCTTATACCTGTA+AGG | 0.385287 | 1_1:-13047415 | None:intergenic |
GTACCCTACCGTCTACTTGA+TGG | 0.392848 | 1_1:-13049438 | None:intergenic |
TTGGACTTTCAAAAGGATAC+AGG | 0.395538 | 1_1:+13047368 | Msa0008960:CDS |
AAAATTGGTAGTGGATCATT+TGG | 0.395776 | 1_1:+13045620 | Msa0008960:CDS |
ATACTGGTAGGCACGGCAAC+TGG | 0.401062 | 1_1:-13048878 | None:intergenic |
TTAATCCCTAACACGTCATC+CGG | 0.402705 | 1_1:-13049368 | None:intergenic |
CACGTGTTTGTATGAAGCTC+AGG | 0.404014 | 1_1:+13049100 | Msa0008960:CDS |
AGCAATACTCACAAAGGAAT+TGG | 0.405316 | 1_1:+13047768 | Msa0008960:CDS |
ATTCCAAGAATGAAATGGTT+TGG | 0.419642 | 1_1:+13046543 | Msa0008960:CDS |
ATAACTTTCTTATGGGTCTT+GGG | 0.425665 | 1_1:+13047219 | Msa0008960:CDS |
CATACAAACACGTGGACGTT+CGG | 0.428322 | 1_1:-13049091 | None:intergenic |
TTTGATGTTGGCCGATCAAA+TGG | 0.434639 | 1_1:+13046665 | Msa0008960:CDS |
GTGGTATTCCAAGAATGAAA+TGG | 0.445472 | 1_1:+13046538 | Msa0008960:CDS |
TAACACGTCATCCGGGTTTG+AGG | 0.451900 | 1_1:-13049360 | None:intergenic |
ATGCTGACTATTTATATGAC+TGG | 0.453335 | 1_1:+13048599 | Msa0008960:CDS |
AAGTGAACAATTCACGAAAC+AGG | 0.453549 | 1_1:-13048371 | None:intergenic |
GATAGAGTATTTACATTCCA+AGG | 0.456851 | 1_1:+13047169 | Msa0008960:CDS |
TCTTGGGAAGAAAGCAAATC+AGG | 0.466032 | 1_1:+13047235 | Msa0008960:CDS |
CATGATCCGCATACCTCAAT+GGG | 0.474980 | 1_1:-13048147 | None:intergenic |
ATCTCTGTGTAGTAATCCCT+TGG | 0.476514 | 1_1:-13047186 | None:intergenic |
TGAGCTTGTGGCCATTAAGA+AGG | 0.478601 | 1_1:+13045757 | Msa0008960:CDS |
ACAACCACAACTACTATATG+AGG | 0.480898 | 1_1:+13046376 | Msa0008960:CDS |
CAAACCCGGATGACGTGTTA+GGG | 0.483244 | 1_1:+13049363 | Msa0008960:CDS |
AGAGATGATTTGGAGTCTCT+TGG | 0.485541 | 1_1:+13047896 | Msa0008960:CDS |
GTATGCTCATCCACATCCTC+TGG | 0.492959 | 1_1:-13048905 | None:intergenic |
TACTGATTTACCTATTTCCA+CGG | 0.495395 | 1_1:+13049292 | Msa0008960:CDS |
CAGTATTGAACCAGAGGATG+TGG | 0.498938 | 1_1:+13048895 | Msa0008960:CDS |
TTGATGGAAAAGGTTGTTGG+AGG | 0.500008 | 1_1:+13045578 | None:intergenic |
ACATGATCCGCATACCTCAA+TGG | 0.503636 | 1_1:-13048148 | None:intergenic |
ATGTGGTGCTTCTGATGACT+TGG | 0.503678 | 1_1:+13049391 | Msa0008960:CDS |
ATCAATGATTACCATTTGAT+CGG | 0.515460 | 1_1:-13046676 | None:intergenic |
TTTGCCTCATATAGTAGTTG+TGG | 0.516903 | 1_1:-13046380 | None:intergenic |
TGTTGTGACTTCTGAGCTTG+TGG | 0.519886 | 1_1:+13045745 | Msa0008960:CDS |
AGAAAATCTTATACCTGTAA+GGG | 0.525824 | 1_1:-13047414 | None:intergenic |
ATGAAATGGTTTGGTACTGA+TGG | 0.526555 | 1_1:+13046552 | Msa0008960:CDS |
GGGATATGCTTGTAACTGAT+AGG | 0.529353 | 1_1:-13047394 | None:intergenic |
GAGGATGTGGATGAGCATAC+AGG | 0.543688 | 1_1:+13048908 | Msa0008960:CDS |
ATTGGTAGGAAAATTGGTAG+TGG | 0.545412 | 1_1:+13045611 | Msa0008960:CDS |
TAAAGCAGGTCATCGAGACT+CGG | 0.547238 | 1_1:-13046609 | None:intergenic |
AGACCCATAAGAAAGTTATC+CGG | 0.547262 | 1_1:-13047215 | None:intergenic |
CTTGCAGACCTTGCCAAGGA+AGG | 0.550925 | 1_1:-13048071 | None:intergenic |
ACCTGCTTTACTACTGTAGT+GGG | 0.563020 | 1_1:+13046622 | Msa0008960:CDS |
GATGGAACTCGGCGTAGTGA+AGG | 0.567947 | 1_1:-13049416 | None:intergenic |
ATAGAGTATTTACATTCCAA+GGG | 0.572950 | 1_1:+13047170 | Msa0008960:CDS |
AAAGCAGGTCATCGAGACTC+GGG | 0.573344 | 1_1:-13046608 | None:intergenic |
TAATCCCTAACACGTCATCC+GGG | 0.576010 | 1_1:-13049367 | None:intergenic |
CCTACCGTCTACTTGATGGA+TGG | 0.576433 | 1_1:-13049434 | None:intergenic |
TCCCACTACAGTAGTAAAGC+AGG | 0.584326 | 1_1:-13046623 | None:intergenic |
TGGACTTTCAAAAGGATACA+GGG | 0.587624 | 1_1:+13047369 | Msa0008960:CDS |
GACTGTGGAAACCTCAAACC+CGG | 0.587686 | 1_1:+13049349 | Msa0008960:CDS |
GACCTGCTTTACTACTGTAG+TGG | 0.588567 | 1_1:+13046621 | Msa0008960:CDS |
TATTTCCACGGTCATGCCTA+CGG | 0.591799 | 1_1:+13049304 | Msa0008960:CDS |
ACTACACAGAGATATCAAAC+CGG | 0.594392 | 1_1:+13047196 | Msa0008960:CDS |
TTATATAACATTCTTAAAGG+AGG | 0.598364 | 1_1:+13046404 | Msa0008960:CDS |
GAGGAAAGTATAGAATTGGT+AGG | 0.607818 | 1_1:+13045597 | Msa0008960:CDS |
GCCTACCAGTATTGAACCAG+AGG | 0.614006 | 1_1:+13048889 | Msa0008960:CDS |
TGGTTCAATACTGGTAGGCA+CGG | 0.622152 | 1_1:-13048885 | None:intergenic |
AAGTAAGAAGCAAACTCCAC+GGG | 0.633022 | 1_1:-13048291 | None:intergenic |
TGGTCGTTGATCAAATGTCA+AGG | 0.635061 | 1_1:-13048328 | None:intergenic |
AAAGTAAGAAGCAAACTCCA+CGG | 0.637426 | 1_1:-13048292 | None:intergenic |
GCAAGTAGCAATACTCACAA+AGG | 0.640002 | 1_1:+13047762 | Msa0008960:CDS |
GCAGCTTGCAGACCTTGCCA+AGG | 0.651297 | 1_1:-13048075 | None:intergenic |
ACGTGTTTGTATGAAGCTCA+GGG | 0.653358 | 1_1:+13049101 | Msa0008960:CDS |
GAAGTTAAACACTCCCATTG+AGG | 0.660651 | 1_1:+13048134 | Msa0008960:CDS |
CTGAGCTTCATACAAACACG+TGG | 0.660997 | 1_1:-13049099 | None:intergenic |
TCCTCTGGTTCAATACTGGT+AGG | 0.662946 | 1_1:-13048890 | None:intergenic |
ACTTTGCAAGTCATGTCCCG+TGG | 0.667670 | 1_1:+13048275 | Msa0008960:CDS |
ATCTTCCGTAGGCATGACCG+TGG | 0.672310 | 1_1:-13049309 | None:intergenic |
TCTACTTGATGGATGGAACT+CGG | 0.675086 | 1_1:-13049427 | None:intergenic |
GTTGATCAAATGTCAAGGAG+CGG | 0.678095 | 1_1:-13048323 | None:intergenic |
TCCAAAACCAGAAACGACTG+TGG | 0.684719 | 1_1:+13049334 | Msa0008960:CDS |
GAGACTCCAAATCATCTCTG+CGG | 0.717836 | 1_1:-13047892 | None:intergenic |
GACGTGTTAGGGATTAAATG+TGG | 0.750915 | 1_1:+13049374 | Msa0008960:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTTAATTTTTTTTCTTTATT+TGG | + | chr1_1:13045833-13045852 | Msa0008960:intron | 10.0% |
!!! | TTACATCATTTTTATCTTTT+CGG | + | chr1_1:13046164-13046183 | Msa0008960:intron | 15.0% |
!!! | TGTTTAAATTTTGATTCATT+TGG | + | chr1_1:13046272-13046291 | Msa0008960:intron | 15.0% |
!! | AAGTTATATAACATTCTTAA+AGG | + | chr1_1:13046401-13046420 | Msa0008960:CDS | 15.0% |
!! | AGATAAATTTAAAAACAGAA+AGG | - | chr1_1:13046731-13046750 | None:intergenic | 15.0% |
!! | ATAAATCATACGTTAAAAAT+TGG | - | chr1_1:13047312-13047331 | None:intergenic | 15.0% |
!!! | CTTTGATTTTATTTTCTAAA+AGG | + | chr1_1:13047600-13047619 | Msa0008960:intron | 15.0% |
!!! | TTTTTACATATGTTTAATAC+CGG | - | chr1_1:13048196-13048215 | None:intergenic | 15.0% |
!! | ATATAGTTAAATTCAAACTT+TGG | + | chr1_1:13048717-13048736 | Msa0008960:intron | 15.0% |
!!! | TCATTTGGTGAAATTTATAT+TGG | + | chr1_1:13045635-13045654 | Msa0008960:CDS | 20.0% |
!!! | AATTTTTGATGATCATTTTC+AGG | + | chr1_1:13045716-13045735 | Msa0008960:intron | 20.0% |
!!! | AACGAAAAAAAGGTTTTTTT+CGG | - | chr1_1:13046052-13046071 | None:intergenic | 20.0% |
!!! | AATAGATGTTCTTGTTTTAT+AGG | + | chr1_1:13046337-13046356 | Msa0008960:intron | 20.0% |
!! | TTATATAACATTCTTAAAGG+AGG | + | chr1_1:13046404-13046423 | Msa0008960:CDS | 20.0% |
!! | ATCACTATAATGAATTAGAA+AGG | - | chr1_1:13046508-13046527 | None:intergenic | 20.0% |
!! | TTTCTAATTCATTATAGTGA+TGG | + | chr1_1:13046507-13046526 | Msa0008960:intron | 20.0% |
!! | AATAAGCTAAAAACAACTTA+TGG | + | chr1_1:13047039-13047058 | Msa0008960:intron | 20.0% |
!! | TGTTATAAAAGAAATGAAAC+AGG | - | chr1_1:13047140-13047159 | None:intergenic | 20.0% |
!! | ATGAAATATGTTACAATAAC+AGG | + | chr1_1:13047330-13047349 | Msa0008960:intron | 20.0% |
!!! | ATTTTTATCATGTGAATTCT+TGG | + | chr1_1:13047554-13047573 | Msa0008960:intron | 20.0% |
!!! | TTTTTCATATTTTTGCATTC+TGG | - | chr1_1:13048103-13048122 | None:intergenic | 20.0% |
!!! | AAAAAGTACATGTACTTATT+TGG | + | chr1_1:13048211-13048230 | Msa0008960:intron | 20.0% |
!! | TCAAAATAAAAATTGAAGCT+TGG | - | chr1_1:13048694-13048713 | None:intergenic | 20.0% |
!! | TGAAAATTTAACCATGAAAA+GGG | - | chr1_1:13048746-13048765 | None:intergenic | 20.0% |
!! | ATGAAAATTTAACCATGAAA+AGG | - | chr1_1:13048747-13048766 | None:intergenic | 20.0% |
!!! | TTTTCATGGTTAAATGTATA+TGG | + | chr1_1:13048786-13048805 | Msa0008960:intron | 20.0% |
! | TATAGAATTGGTAGGAAAAT+TGG | + | chr1_1:13045605-13045624 | Msa0008960:CDS | 25.0% |
!!! | GAAATTGTTGCTTTGATTTT+TGG | + | chr1_1:13045793-13045812 | Msa0008960:intron | 25.0% |
!! | TTTGGTGTAATAATTGTGAT+TGG | + | chr1_1:13045851-13045870 | Msa0008960:intron | 25.0% |
! | TTGGTGTAATAATTGTGATT+GGG | + | chr1_1:13045852-13045871 | Msa0008960:intron | 25.0% |
!!! | ACGAAAAAAAGGTTTTTTTC+GGG | - | chr1_1:13046051-13046070 | None:intergenic | 25.0% |
! | ATATAGAAGCAACGAAAAAA+AGG | - | chr1_1:13046062-13046081 | None:intergenic | 25.0% |
! | AGTCACATTTACGTTAATAA+TGG | + | chr1_1:13046108-13046127 | Msa0008960:intron | 25.0% |
! | TGTAAATTATCACAAAGTTG+AGG | - | chr1_1:13046318-13046337 | None:intergenic | 25.0% |
!! | CATTATAGTGATGGAATTTA+AGG | + | chr1_1:13046516-13046535 | Msa0008960:intron | 25.0% |
! | ATCAATGATTACCATTTGAT+CGG | - | chr1_1:13046679-13046698 | None:intergenic | 25.0% |
!! | AGCACATTAGTTTAAAATGA+AGG | + | chr1_1:13046843-13046862 | Msa0008960:intron | 25.0% |
!! | GCACATTAGTTTAAAATGAA+GGG | + | chr1_1:13046844-13046863 | Msa0008960:intron | 25.0% |
!!! | AGTTGTTTTTATAAGCTATC+TGG | + | chr1_1:13047003-13047022 | Msa0008960:intron | 25.0% |
!!! | GTTGTTTTTATAAGCTATCT+GGG | + | chr1_1:13047004-13047023 | Msa0008960:intron | 25.0% |
! | ATCCAATAAGTAAATCAAAC+AGG | + | chr1_1:13047107-13047126 | Msa0008960:intron | 25.0% |
!! | ATAGAGTATTTACATTCCAA+GGG | + | chr1_1:13047170-13047189 | Msa0008960:CDS | 25.0% |
! | ACTATAGAGGAATTAAAACA+TGG | - | chr1_1:13047288-13047307 | None:intergenic | 25.0% |
! | GTTAAAAATTGGAACTATAG+AGG | - | chr1_1:13047301-13047320 | None:intergenic | 25.0% |
!!! | ATTGATTTTGGACTTTCAAA+AGG | + | chr1_1:13047361-13047380 | Msa0008960:CDS | 25.0% |
! | AGAAAATCTTATACCTGTAA+GGG | - | chr1_1:13047417-13047436 | None:intergenic | 25.0% |
! | TAGAAAATCTTATACCTGTA+AGG | - | chr1_1:13047418-13047437 | None:intergenic | 25.0% |
! | TCTTAACAAGACAATAAAGA+AGG | - | chr1_1:13047815-13047834 | None:intergenic | 25.0% |
!!! | GTTCTTTTGTACTTTTTAAG+AGG | + | chr1_1:13047923-13047942 | Msa0008960:CDS | 25.0% |
!!! | TTTTGTACTTTTTAAGAGGA+AGG | + | chr1_1:13047927-13047946 | Msa0008960:CDS | 25.0% |
! | ATGGTAAAAGTAGAATCAAT+AGG | - | chr1_1:13047963-13047982 | None:intergenic | 25.0% |
! | TCACTTCCTAAATTTATGTT+TGG | + | chr1_1:13048567-13048586 | Msa0008960:intron | 25.0% |
!!! | ATGCTCAAACATTTTTTTCA+TGG | + | chr1_1:13048772-13048791 | Msa0008960:intron | 25.0% |
! | CAATATTATCAGTATTGTGA+AGG | + | chr1_1:13048975-13048994 | Msa0008960:intron | 25.0% |
!! | CAATCATTGTATTCTGAAAA+AGG | - | chr1_1:13049036-13049055 | None:intergenic | 25.0% |
!! | AAAATTGGTAGTGGATCATT+TGG | + | chr1_1:13045620-13045639 | Msa0008960:CDS | 30.0% |
CATTAGACTAACCTTCTTAA+TGG | - | chr1_1:13045771-13045790 | None:intergenic | 30.0% | |
!! | CATTAAGAAGGTTAGTCTAA+TGG | + | chr1_1:13045769-13045788 | Msa0008960:intron | 30.0% |
TATGAATTACAAATGCTCCT+GGG | + | chr1_1:13045937-13045956 | Msa0008960:intron | 30.0% | |
ACTAAGATACACTTGTTCTT+AGG | - | chr1_1:13045972-13045991 | None:intergenic | 30.0% | |
! | TTTATCTTTTCGGTAGTAGA+TGG | + | chr1_1:13046174-13046193 | Msa0008960:intron | 30.0% |
AGGAGGAAGTAAGTTATAAA+AGG | + | chr1_1:13046421-13046440 | Msa0008960:intron | 30.0% | |
ACAAAGGGAATATATTGTGA+GGG | - | chr1_1:13046476-13046495 | None:intergenic | 30.0% | |
AACAAAGGGAATATATTGTG+AGG | - | chr1_1:13046477-13046496 | None:intergenic | 30.0% | |
GAAAGGACTAAGAAAACAAA+GGG | - | chr1_1:13046491-13046510 | None:intergenic | 30.0% | |
AGAAAGGACTAAGAAAACAA+AGG | - | chr1_1:13046492-13046511 | None:intergenic | 30.0% | |
! | TATAGTGATGGAATTTAAGG+TGG | + | chr1_1:13046519-13046538 | Msa0008960:intron | 30.0% |
ATTCCAAGAATGAAATGGTT+TGG | + | chr1_1:13046543-13046562 | Msa0008960:CDS | 30.0% | |
!! | TGTTCTAGTTCTTGAACTTA+TGG | + | chr1_1:13046584-13046603 | Msa0008960:CDS | 30.0% |
!! | GTTCTAGTTCTTGAACTTAT+GGG | + | chr1_1:13046585-13046604 | Msa0008960:CDS | 30.0% |
!! | GGTAATCATTGATTCATCTA+TGG | + | chr1_1:13046686-13046705 | Msa0008960:intron | 30.0% |
AAAGGAAAAGATGCATTCAA+CGG | - | chr1_1:13046713-13046732 | None:intergenic | 30.0% | |
GCAAGTTTGATGTAAAAAGA+GGG | - | chr1_1:13046810-13046829 | None:intergenic | 30.0% | |
TGCAAGTTTGATGTAAAAAG+AGG | - | chr1_1:13046811-13046830 | None:intergenic | 30.0% | |
TTACATCAAACTTGCATCAA+CGG | + | chr1_1:13046815-13046834 | Msa0008960:intron | 30.0% | |
! | AGCCTGTTTGATTTACTTAT+TGG | - | chr1_1:13047112-13047131 | None:intergenic | 30.0% |
! | TTCTTTTATAACAGCTTACG+AGG | + | chr1_1:13047147-13047166 | Msa0008960:intron | 30.0% |
! | GATAGAGTATTTACATTCCA+AGG | + | chr1_1:13047169-13047188 | Msa0008960:CDS | 30.0% |
AAACCGGATAACTTTCTTAT+GGG | + | chr1_1:13047212-13047231 | Msa0008960:CDS | 30.0% | |
ATAACTTTCTTATGGGTCTT+GGG | + | chr1_1:13047219-13047238 | Msa0008960:CDS | 30.0% | |
!! | CAGGTTTGTATGATTGATTT+TGG | + | chr1_1:13047349-13047368 | Msa0008960:intron | 30.0% |
TGTTTGATCTCTTCTTGATA+TGG | + | chr1_1:13047455-13047474 | Msa0008960:intron | 30.0% | |
! | TGACAGAAAAGCTGTTATTT+AGG | - | chr1_1:13047528-13047547 | None:intergenic | 30.0% |
AAGTCACTAAGAATGAATCA+AGG | - | chr1_1:13047631-13047650 | None:intergenic | 30.0% | |
ATAGATAGCTGAATTCAAAG+TGG | - | chr1_1:13047662-13047681 | None:intergenic | 30.0% | |
! | AGTTAAGTTTTTGTTCTCTC+TGG | - | chr1_1:13047727-13047746 | None:intergenic | 30.0% |
AGAGAGAACAAAAACTTAAC+TGG | + | chr1_1:13047726-13047745 | Msa0008960:intron | 30.0% | |
AAATCGAGAGTGAAAATTGT+AGG | - | chr1_1:13047848-13047867 | None:intergenic | 30.0% | |
! | ACAATTTTCACTCTCGATTT+TGG | + | chr1_1:13047848-13047867 | Msa0008960:intron | 30.0% |
AAACGTTAGACTTGACTATT+TGG | + | chr1_1:13048034-13048053 | Msa0008960:intron | 30.0% | |
!! | TTCATATTTTTGCATTCTGG+TGG | - | chr1_1:13048100-13048119 | None:intergenic | 30.0% |
TACATATGTTTAATACCGGA+GGG | - | chr1_1:13048192-13048211 | None:intergenic | 30.0% | |
TTACATATGTTTAATACCGG+AGG | - | chr1_1:13048193-13048212 | None:intergenic | 30.0% | |
ACAACGAATTTCTTGTTCTT+AGG | + | chr1_1:13048251-13048270 | Msa0008960:intron | 30.0% | |
! | TTTCGAGGATTTTCAATTTC+AGG | + | chr1_1:13048464-13048483 | Msa0008960:intron | 30.0% |
ATCGTGAGTATCAAACAATT+TGG | - | chr1_1:13048522-13048541 | None:intergenic | 30.0% | |
TTCCTAAATTTATGTTTGGC+AGG | + | chr1_1:13048571-13048590 | Msa0008960:intron | 30.0% | |
ATCCTGCCAAACATAAATTT+AGG | - | chr1_1:13048576-13048595 | None:intergenic | 30.0% | |
! | ATGCTGACTATTTATATGAC+TGG | + | chr1_1:13048599-13048618 | Msa0008960:CDS | 30.0% |
!!! | CTGGACGATTTTAAAATATC+AGG | + | chr1_1:13048618-13048637 | Msa0008960:CDS | 30.0% |
ATTTCCCGTTTACAATTTGT+AGG | + | chr1_1:13048853-13048872 | Msa0008960:intron | 30.0% | |
!! | TACTGATTTACCTATTTCCA+CGG | + | chr1_1:13049292-13049311 | Msa0008960:CDS | 30.0% |
! | GTTGGAGGAAAGTATAGAAT+TGG | + | chr1_1:13045593-13045612 | Msa0008960:CDS | 35.0% |
! | GAGGAAAGTATAGAATTGGT+AGG | + | chr1_1:13045597-13045616 | Msa0008960:CDS | 35.0% |
ATTGGTAGGAAAATTGGTAG+TGG | + | chr1_1:13045611-13045630 | Msa0008960:CDS | 35.0% | |
CTATGAATTACAAATGCTCC+TGG | + | chr1_1:13045936-13045955 | Msa0008960:intron | 35.0% | |
AATGTGTTCGAGAATATCGA+AGG | - | chr1_1:13046086-13046105 | None:intergenic | 35.0% | |
ACAACCACAACTACTATATG+AGG | + | chr1_1:13046376-13046395 | Msa0008960:CDS | 35.0% | |
TTTGCCTCATATAGTAGTTG+TGG | - | chr1_1:13046383-13046402 | None:intergenic | 35.0% | |
GTGGTATTCCAAGAATGAAA+TGG | + | chr1_1:13046538-13046557 | Msa0008960:CDS | 35.0% | |
GTACCAAACCATTTCATTCT+TGG | - | chr1_1:13046549-13046568 | None:intergenic | 35.0% | |
!! | ATGAAATGGTTTGGTACTGA+TGG | + | chr1_1:13046552-13046571 | Msa0008960:CDS | 35.0% |
! | TGGGAAGTTTTCGCTAAAAT+CGG | + | chr1_1:13046641-13046660 | Msa0008960:CDS | 35.0% |
!! | GCTAAAATCGGTTTTGATGT+TGG | + | chr1_1:13046653-13046672 | Msa0008960:CDS | 35.0% |
ACTACACAGAGATATCAAAC+CGG | + | chr1_1:13047196-13047215 | Msa0008960:CDS | 35.0% | |
CAAACCGGATAACTTTCTTA+TGG | + | chr1_1:13047211-13047230 | Msa0008960:CDS | 35.0% | |
AGACCCATAAGAAAGTTATC+CGG | - | chr1_1:13047218-13047237 | None:intergenic | 35.0% | |
GATAACTTTCTTATGGGTCT+TGG | + | chr1_1:13047218-13047237 | Msa0008960:CDS | 35.0% | |
TTGGACTTTCAAAAGGATAC+AGG | + | chr1_1:13047368-13047387 | Msa0008960:CDS | 35.0% | |
TGGACTTTCAAAAGGATACA+GGG | + | chr1_1:13047369-13047388 | Msa0008960:CDS | 35.0% | |
AGCAATACTCACAAAGGAAT+TGG | + | chr1_1:13047768-13047787 | Msa0008960:CDS | 35.0% | |
AGCAACATCTTTATGATGCA+TGG | - | chr1_1:13047982-13048001 | None:intergenic | 35.0% | |
AAAGTAAGAAGCAAACTCCA+CGG | - | chr1_1:13048295-13048314 | None:intergenic | 35.0% | |
TTTGATCAACGACCAGATTA+TGG | + | chr1_1:13048336-13048355 | Msa0008960:CDS | 35.0% | |
CGCTTCAAATATCCATAATC+TGG | - | chr1_1:13048351-13048370 | None:intergenic | 35.0% | |
AAGTGAACAATTCACGAAAC+AGG | - | chr1_1:13048374-13048393 | None:intergenic | 35.0% | |
CGTGAATTGTTCACTTCTAA+AGG | + | chr1_1:13048378-13048397 | Msa0008960:CDS | 35.0% | |
! | TAGCAACAGCTTGTTTAAGA+TGG | + | chr1_1:13048427-13048446 | Msa0008960:intron | 35.0% |
!! | GCAATTTACATGTTGTTTCG+AGG | + | chr1_1:13048449-13048468 | Msa0008960:intron | 35.0% |
TCAGGAGATTCAACAGATAA+AGG | + | chr1_1:13048636-13048655 | Msa0008960:CDS | 35.0% | |
TGGAGCCTACAAATTGTAAA+CGG | - | chr1_1:13048861-13048880 | None:intergenic | 35.0% | |
! | TCGGTATAGATTTTCGGTTT+TGG | - | chr1_1:13049075-13049094 | None:intergenic | 35.0% |
TTACAAATGCTCCTGGGATT+AGG | + | chr1_1:13045943-13045962 | Msa0008960:intron | 40.0% | |
! | TCTTTTCGGTAGTAGATGGA+TGG | + | chr1_1:13046178-13046197 | Msa0008960:intron | 40.0% |
ACCTGCTTTACTACTGTAGT+GGG | + | chr1_1:13046622-13046641 | Msa0008960:CDS | 40.0% | |
TTTGATGTTGGCCGATCAAA+TGG | + | chr1_1:13046665-13046684 | Msa0008960:CDS | 40.0% | |
ATCTCTGTGTAGTAATCCCT+TGG | - | chr1_1:13047189-13047208 | None:intergenic | 40.0% | |
TCTTGGGAAGAAAGCAAATC+AGG | + | chr1_1:13047235-13047254 | Msa0008960:CDS | 40.0% | |
GGGATATGCTTGTAACTGAT+AGG | - | chr1_1:13047397-13047416 | None:intergenic | 40.0% | |
GTTACAAGCATATCCCTTAC+AGG | + | chr1_1:13047401-13047420 | Msa0008960:CDS | 40.0% | |
CTCTCTGGATGAGTTTATCA+AGG | - | chr1_1:13047712-13047731 | None:intergenic | 40.0% | |
GCAAGTAGCAATACTCACAA+AGG | + | chr1_1:13047762-13047781 | Msa0008960:CDS | 40.0% | |
! | AGAGATGATTTGGAGTCTCT+TGG | + | chr1_1:13047896-13047915 | Msa0008960:CDS | 40.0% |
! | ATGTTGCTTGTGACTCTCAA+CGG | + | chr1_1:13047994-13048013 | Msa0008960:intron | 40.0% |
!! | TGTTGCATTTTAGCCTTCCT+TGG | + | chr1_1:13048058-13048077 | Msa0008960:intron | 40.0% |
GAAGTTAAACACTCCCATTG+AGG | + | chr1_1:13048134-13048153 | Msa0008960:CDS | 40.0% | |
AAGTAAGAAGCAAACTCCAC+GGG | - | chr1_1:13048294-13048313 | None:intergenic | 40.0% | |
GTTGATCAAATGTCAAGGAG+CGG | - | chr1_1:13048326-13048345 | None:intergenic | 40.0% | |
TGGTCGTTGATCAAATGTCA+AGG | - | chr1_1:13048331-13048350 | None:intergenic | 40.0% | |
! | AACTTTGGTCACCCTTTTCA+TGG | + | chr1_1:13048732-13048751 | Msa0008960:intron | 40.0% |
GGAGCCTACAAATTGTAAAC+GGG | - | chr1_1:13048860-13048879 | None:intergenic | 40.0% | |
! | AGTGTCATTAGAACATGCTC+TGG | - | chr1_1:13049009-13049028 | None:intergenic | 40.0% |
! | GGACGTTCGGTATAGATTTT+CGG | - | chr1_1:13049081-13049100 | None:intergenic | 40.0% |
ACGTGTTTGTATGAAGCTCA+GGG | + | chr1_1:13049101-13049120 | Msa0008960:CDS | 40.0% | |
AATAACTTCAGCATGCAGAG+AGG | - | chr1_1:13049179-13049198 | None:intergenic | 40.0% | |
CCCATTCAAGTGAGTTACTT+CGG | - | chr1_1:13049249-13049268 | None:intergenic | 40.0% | |
CCGAAGTAACTCACTTGAAT+GGG | + | chr1_1:13049246-13049265 | Msa0008960:intron | 40.0% | |
TTAATCCCTAACACGTCATC+CGG | - | chr1_1:13049371-13049390 | None:intergenic | 40.0% | |
GACGTGTTAGGGATTAAATG+TGG | + | chr1_1:13049374-13049393 | Msa0008960:CDS | 40.0% | |
TGTTGTGACTTCTGAGCTTG+TGG | + | chr1_1:13045745-13045764 | Msa0008960:CDS | 45.0% | |
TGAGCTTGTGGCCATTAAGA+AGG | + | chr1_1:13045757-13045776 | Msa0008960:CDS | 45.0% | |
TTCTTAGGATGCCTAATCCC+AGG | - | chr1_1:13045957-13045976 | None:intergenic | 45.0% | |
GTTGTCAGACATGTGTTGCA+CGG | - | chr1_1:13046016-13046035 | None:intergenic | 45.0% | |
TAAAGCAGGTCATCGAGACT+CGG | - | chr1_1:13046612-13046631 | None:intergenic | 45.0% | |
GACCTGCTTTACTACTGTAG+TGG | + | chr1_1:13046621-13046640 | Msa0008960:CDS | 45.0% | |
TCCCACTACAGTAGTAAAGC+AGG | - | chr1_1:13046626-13046645 | None:intergenic | 45.0% | |
AAGCTATCTGGGAGAGCTTA+TGG | + | chr1_1:13047015-13047034 | Msa0008960:intron | 45.0% | |
GAGACTCCAAATCATCTCTG+CGG | - | chr1_1:13047895-13047914 | None:intergenic | 45.0% | |
! | TCAACGGTGCACGGTTATTT+TGG | + | chr1_1:13048010-13048029 | Msa0008960:intron | 45.0% |
!! | CATTTTAGCCTTCCTTGGCA+AGG | + | chr1_1:13048063-13048082 | Msa0008960:intron | 45.0% |
AACACTCCCATTGAGGTATG+CGG | + | chr1_1:13048141-13048160 | Msa0008960:intron | 45.0% | |
CATGATCCGCATACCTCAAT+GGG | - | chr1_1:13048150-13048169 | None:intergenic | 45.0% | |
ACATGATCCGCATACCTCAA+TGG | - | chr1_1:13048151-13048170 | None:intergenic | 45.0% | |
TGGTTCAATACTGGTAGGCA+CGG | - | chr1_1:13048888-13048907 | None:intergenic | 45.0% | |
! | TCCTCTGGTTCAATACTGGT+AGG | - | chr1_1:13048893-13048912 | None:intergenic | 45.0% |
! | CACATCCTCTGGTTCAATAC+TGG | - | chr1_1:13048897-13048916 | None:intergenic | 45.0% |
! | CAGTATTGAACCAGAGGATG+TGG | + | chr1_1:13048895-13048914 | Msa0008960:CDS | 45.0% |
CATACAAACACGTGGACGTT+CGG | - | chr1_1:13049094-13049113 | None:intergenic | 45.0% | |
CTGAGCTTCATACAAACACG+TGG | - | chr1_1:13049102-13049121 | None:intergenic | 45.0% | |
CACGTGTTTGTATGAAGCTC+AGG | + | chr1_1:13049100-13049119 | Msa0008960:CDS | 45.0% | |
GCCGAAGTAACTCACTTGAA+TGG | + | chr1_1:13049245-13049264 | Msa0008960:intron | 45.0% | |
TATTTCCACGGTCATGCCTA+CGG | + | chr1_1:13049304-13049323 | Msa0008960:CDS | 45.0% | |
!!! | GGTTTTGGAACATCTTCCGT+AGG | - | chr1_1:13049323-13049342 | None:intergenic | 45.0% |
TCCAAAACCAGAAACGACTG+TGG | + | chr1_1:13049334-13049353 | Msa0008960:CDS | 45.0% | |
!!! | TCCACAGTCGTTTCTGGTTT+TGG | - | chr1_1:13049338-13049357 | None:intergenic | 45.0% |
TAATCCCTAACACGTCATCC+GGG | - | chr1_1:13049370-13049389 | None:intergenic | 45.0% | |
ATGTGGTGCTTCTGATGACT+TGG | + | chr1_1:13049391-13049410 | Msa0008960:CDS | 45.0% | |
AAAGCAGGTCATCGAGACTC+GGG | - | chr1_1:13046611-13046630 | None:intergenic | 50.0% | |
GCAAAGCCGCAGAGATGATT+TGG | + | chr1_1:13047886-13047905 | Msa0008960:CDS | 50.0% | |
TTGTGACTCTCAACGGTGCA+CGG | + | chr1_1:13048001-13048020 | Msa0008960:intron | 50.0% | |
ACTTTGCAAGTCATGTCCCG+TGG | + | chr1_1:13048275-13048294 | Msa0008960:CDS | 50.0% | |
! | GCCTACCAGTATTGAACCAG+AGG | + | chr1_1:13048889-13048908 | Msa0008960:CDS | 50.0% |
GTATGCTCATCCACATCCTC+TGG | - | chr1_1:13048908-13048927 | None:intergenic | 50.0% | |
GAGGATGTGGATGAGCATAC+AGG | + | chr1_1:13048908-13048927 | Msa0008960:CDS | 50.0% | |
GTAGGCATGACCGTGGAAAT+AGG | - | chr1_1:13049305-13049324 | None:intergenic | 50.0% | |
GAGGTTTCCACAGTCGTTTC+TGG | - | chr1_1:13049344-13049363 | None:intergenic | 50.0% | |
GACTGTGGAAACCTCAAACC+CGG | + | chr1_1:13049349-13049368 | Msa0008960:CDS | 50.0% | |
TAACACGTCATCCGGGTTTG+AGG | - | chr1_1:13049363-13049382 | None:intergenic | 50.0% | |
TCAAACCCGGATGACGTGTT+AGG | + | chr1_1:13049362-13049381 | Msa0008960:CDS | 50.0% | |
CAAACCCGGATGACGTGTTA+GGG | + | chr1_1:13049363-13049382 | Msa0008960:CDS | 50.0% | |
CTTGCAGACCTTGCCAAGGA+AGG | - | chr1_1:13048074-13048093 | None:intergenic | 55.0% | |
ATACTGGTAGGCACGGCAAC+TGG | - | chr1_1:13048881-13048900 | None:intergenic | 55.0% | |
ATCTTCCGTAGGCATGACCG+TGG | - | chr1_1:13049312-13049331 | None:intergenic | 55.0% | |
GATGGAACTCGGCGTAGTGA+AGG | - | chr1_1:13049419-13049438 | None:intergenic | 55.0% | |
GCAGCTTGCAGACCTTGCCA+AGG | - | chr1_1:13048078-13048097 | None:intergenic | 60.0% | |
! | CGGAGGGAGTACGTAGCAAG+GGG | - | chr1_1:13048176-13048195 | None:intergenic | 60.0% |
! | CCGGAGGGAGTACGTAGCAA+GGG | - | chr1_1:13048177-13048196 | None:intergenic | 60.0% |
CCCTTGCTACGTACTCCCTC+CGG | + | chr1_1:13048174-13048193 | Msa0008960:intron | 60.0% | |
! | ACCGGAGGGAGTACGTAGCA+AGG | - | chr1_1:13048178-13048197 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 13045581 | 13049448 | 13045581 | ID=Msa0008960;Name=Msa0008960 |
chr1_1 | mRNA | 13045581 | 13049448 | 13045581 | ID=Msa0008960-mRNA-1;Parent=Msa0008960;Name=Msa0008960-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.53|0.42|1|1|1|14|0|423 |
chr1_1 | exon | 13045581 | 13045656 | 13045581 | ID=Msa0008960-mRNA-1:exon:4899;Parent=Msa0008960-mRNA-1 |
chr1_1 | exon | 13045738 | 13045778 | 13045738 | ID=Msa0008960-mRNA-1:exon:4900;Parent=Msa0008960-mRNA-1 |
chr1_1 | exon | 13046359 | 13046428 | 13046359 | ID=Msa0008960-mRNA-1:exon:4901;Parent=Msa0008960-mRNA-1 |
chr1_1 | exon | 13046538 | 13046686 | 13046538 | ID=Msa0008960-mRNA-1:exon:4902;Parent=Msa0008960-mRNA-1 |
chr1_1 | exon | 13047161 | 13047256 | 13047161 | ID=Msa0008960-mRNA-1:exon:4903;Parent=Msa0008960-mRNA-1 |
chr1_1 | exon | 13047352 | 13047422 | 13047352 | ID=Msa0008960-mRNA-1:exon:4904;Parent=Msa0008960-mRNA-1 |
chr1_1 | exon | 13047728 | 13047789 | 13047728 | ID=Msa0008960-mRNA-1:exon:4905;Parent=Msa0008960-mRNA-1 |
chr1_1 | exon | 13047885 | 13047948 | 13047885 | ID=Msa0008960-mRNA-1:exon:4906;Parent=Msa0008960-mRNA-1 |
chr1_1 | exon | 13048071 | 13048155 | 13048071 | ID=Msa0008960-mRNA-1:exon:4907;Parent=Msa0008960-mRNA-1 |
chr1_1 | exon | 13048273 | 13048399 | 13048273 | ID=Msa0008960-mRNA-1:exon:4908;Parent=Msa0008960-mRNA-1 |
chr1_1 | exon | 13048593 | 13048675 | 13048593 | ID=Msa0008960-mRNA-1:exon:4909;Parent=Msa0008960-mRNA-1 |
chr1_1 | exon | 13048875 | 13048929 | 13048875 | ID=Msa0008960-mRNA-1:exon:4910;Parent=Msa0008960-mRNA-1 |
chr1_1 | exon | 13049043 | 13049170 | 13049043 | ID=Msa0008960-mRNA-1:exon:4911;Parent=Msa0008960-mRNA-1 |
chr1_1 | exon | 13049284 | 13049448 | 13049284 | ID=Msa0008960-mRNA-1:exon:4912;Parent=Msa0008960-mRNA-1 |
chr1_1 | CDS | 13045581 | 13045656 | 13045581 | ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1 |
chr1_1 | CDS | 13045738 | 13045778 | 13045738 | ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1 |
chr1_1 | CDS | 13046359 | 13046428 | 13046359 | ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1 |
chr1_1 | CDS | 13046538 | 13046686 | 13046538 | ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1 |
chr1_1 | CDS | 13047161 | 13047256 | 13047161 | ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1 |
chr1_1 | CDS | 13047352 | 13047422 | 13047352 | ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1 |
chr1_1 | CDS | 13047728 | 13047789 | 13047728 | ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1 |
chr1_1 | CDS | 13047885 | 13047948 | 13047885 | ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1 |
chr1_1 | CDS | 13048071 | 13048155 | 13048071 | ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1 |
chr1_1 | CDS | 13048273 | 13048399 | 13048273 | ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1 |
chr1_1 | CDS | 13048593 | 13048675 | 13048593 | ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1 |
chr1_1 | CDS | 13048875 | 13048929 | 13048875 | ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1 |
chr1_1 | CDS | 13049043 | 13049170 | 13049043 | ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1 |
chr1_1 | CDS | 13049284 | 13049448 | 13049284 | ID=Msa0008960-mRNA-1:cds;Parent=Msa0008960-mRNA-1 |
Gene Sequence |
Protein sequence |