AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0246510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0246510 MtrunA17_Chr2g0301081 94.007 267 2 1 1 253 1 267 0.0 501
Msa0246510 MtrunA17_Chr8g0345631 61.290 217 70 1 49 251 50 266 2.27e-92 273
Msa0246510 MtrunA17_Chr3g0092091 46.269 201 88 3 65 251 56 250 1.99e-55 178
Msa0246510 MtrunA17_Chr3g0133901 37.132 272 142 6 1 252 2 264 8.21e-44 149
Msa0246510 MtrunA17_Chr5g0448421 34.643 280 137 9 5 250 7 274 3.45e-40 140
Msa0246510 MtrunA17_Chr5g0448411 34.982 283 130 10 5 250 7 272 7.54e-40 139
Msa0246510 MtrunA17_Chr6g0462031 35.122 205 91 8 65 246 49 234 7.86e-28 106
Msa0246510 MtrunA17_Chr2g0279001 33.740 246 99 8 31 223 15 249 1.46e-26 103
Msa0246510 MtrunA17_Chr4g0006181 35.912 181 81 6 83 252 190 346 9.93e-25 100
Msa0246510 MtrunA17_Chr6g0453151 34.762 210 100 9 57 245 127 320 3.84e-24 99.0
Msa0246510 MtrunA17_Chr6g0453141 32.794 247 116 10 39 252 31 260 5.99e-24 97.1
Msa0246510 MtrunA17_Chr4g0051941 30.282 284 138 11 2 252 5 261 1.02e-23 96.3
Msa0246510 MtrunA17_Chr1g0157481 33.488 215 99 7 72 252 125 329 1.22e-23 97.4
Msa0246510 MtrunA17_Chr5g0447531 30.258 271 135 11 3 241 1 249 3.59e-23 95.1
Msa0246510 MtrunA17_Chr6g0453181 33.180 217 108 9 57 252 60 260 4.74e-23 94.7
Msa0246510 MtrunA17_Chr6g0453161 32.377 244 121 10 37 252 35 262 5.47e-23 97.4
Msa0246510 MtrunA17_Chr6g0453161 32.719 217 109 9 57 252 327 527 2.62e-21 92.4
Msa0246510 MtrunA17_Chr6g0476641 31.390 223 108 8 60 252 74 281 1.38e-22 94.0
Msa0246510 MtrunA17_Chr2g0318521 33.491 212 94 8 57 241 57 248 8.09e-22 91.3
Msa0246510 MtrunA17_Chr2g0296081 45.679 81 38 2 173 253 30 104 3.19e-15 69.7
Msa0246510 MtrunA17_Chr6g0464511 37.121 132 59 5 122 245 85 200 7.29e-15 71.2
Msa0246510 MtrunA17_Chr3g0113311 32.500 160 73 6 83 231 135 270 4.16e-14 70.5
Msa0246510 MtrunA17_Chr6g0453171 40.196 102 45 4 144 245 1 86 1.83e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0246510 AT1G19150.1 68.952 248 61 2 19 252 24 269 5.76e-125 356
Msa0246510 AT3G61470.1 62.621 206 63 1 60 251 50 255 5.75e-90 266
Msa0246510 AT3G47470.1 42.616 237 102 5 29 251 35 251 4.35e-56 180
Msa0246510 AT1G45474.2 39.485 233 118 6 39 252 26 254 2.74e-42 145
Msa0246510 AT1G45474.1 39.485 233 118 6 39 252 26 254 2.74e-42 145
Msa0246510 AT5G28450.1 63.366 101 37 0 151 251 71 171 2.60e-40 137
Msa0246510 AT1G61520.3 37.946 224 100 6 61 250 52 270 2.18e-39 138
Msa0246510 AT1G61520.1 37.946 224 100 6 61 250 52 270 2.18e-39 138
Msa0246510 AT1G61520.2 38.605 215 110 6 51 250 8 215 2.12e-36 129
Msa0246510 AT3G54890.1 36.585 205 88 8 65 246 48 233 2.31e-29 111
Msa0246510 AT1G15820.1 32.692 260 124 10 1 223 1 246 1.03e-26 104
Msa0246510 AT2G05070.1 34.562 217 105 9 57 252 60 260 5.01e-25 100
Msa0246510 AT2G05100.1 34.562 217 105 9 57 252 60 260 5.50e-25 100
Msa0246510 AT3G27690.1 33.981 206 99 9 57 241 61 250 6.99e-24 97.4
Msa0246510 AT3G27690.2 33.981 206 99 9 57 241 93 282 8.49e-24 97.8
Msa0246510 AT1G29930.1 34.286 210 102 8 57 245 61 255 9.12e-24 97.1
Msa0246510 AT1G29920.1 34.286 210 102 8 57 245 61 255 9.51e-24 97.1
Msa0246510 AT1G29910.1 34.286 210 102 8 57 245 61 255 9.51e-24 97.1
Msa0246510 AT2G34420.1 33.019 212 97 7 71 252 64 260 2.72e-23 95.5
Msa0246510 AT2G34430.1 33.659 205 91 7 71 245 65 254 2.74e-23 95.5
Msa0246510 AT5G01530.1 35.795 176 78 6 88 252 138 289 3.27e-23 95.9
Msa0246510 AT1G76570.1 32.883 222 112 8 57 252 117 327 4.42e-23 96.3
Msa0246510 AT4G10340.1 34.703 219 98 9 60 248 65 268 7.67e-23 94.7
Msa0246510 AT3G08940.2 33.702 181 85 6 83 252 130 286 6.35e-22 92.4
Msa0246510 AT5G54270.1 35.196 179 84 6 80 241 86 249 2.08e-21 90.5
Msa0246510 AT3G54890.2 33.171 205 61 8 65 246 48 199 6.98e-19 82.4
Msa0246510 AT2G05100.2 32.804 189 90 9 57 224 60 232 5.65e-17 79.3
Msa0246510 AT2G40100.1 33.129 163 73 7 83 234 134 271 1.37e-15 74.7
Msa0246510 AT3G54890.4 30.270 185 87 8 65 226 48 213 8.44e-15 71.6

Find 92 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCCTGTAATTTGTAATT+AGG 0.195230 2_2:+27803955 Msa0246510:three_prime_UTR
CTTCCCAATTGCAGCCTTCC+TGG 0.199772 2_2:+27802246 Msa0246510:intron
CTTGTGCAGGCTTTCACTTC+AGG 0.220137 2_2:+27803775 Msa0246510:intron
ATCACTTTATCTGTTATATA+TGG 0.237860 2_2:-27801539 None:intergenic
CTTTCCTAATTACAAATTAC+AGG 0.255241 2_2:-27803959 None:intergenic
CATTGTTCAACTAGCCCTAA+TGG 0.296474 2_2:+27802725 Msa0246510:CDS
TACCTGCCATCAAGCCATTC+AGG 0.297044 2_2:-27801899 None:intergenic
GTTTGGCCTATTTGGTAACT+TGG 0.311362 2_2:-27802808 None:intergenic
GGGTAACCAACATCTGGTTT+TGG 0.345083 2_2:-27802831 None:intergenic
GACCTTCAACCCATCCCATT+AGG 0.346528 2_2:-27802740 None:intergenic
GGGAACCACAATGGCCTATC+AGG 0.353569 2_2:-27801863 None:intergenic
ACCTTCAACCCATCCCATTA+GGG 0.359126 2_2:-27802739 None:intergenic
CTTGTGTCAATTGTAAAATT+CGG 0.369852 2_2:-27803889 None:intergenic
CAGATCCAGAGTTACTAAAA+TGG 0.373832 2_2:+27802547 Msa0246510:intron
AAGCGCATTACATGTAATAA+TGG 0.376771 2_2:-27803860 None:intergenic
CAGTGGCTGAATTTCTTACT+TGG 0.380299 2_2:-27801579 None:intergenic
AGGTTCACCTGAGCCTGTTA+TGG 0.381131 2_2:+27802890 Msa0246510:CDS
ATGGCTCATCTTGCTGATCC+TGG 0.385502 2_2:+27803017 Msa0246510:CDS
TTAGTCCTCAAAACCATAAC+AGG 0.387512 2_2:-27802903 None:intergenic
TGGGCAATGTTAGGAGTATC+AGG 0.387629 2_2:+27802600 Msa0246510:CDS
TTGAGCCCAAGTTACCAAAT+AGG 0.388379 2_2:+27802802 Msa0246510:CDS
ATTGTTCAACTAGCCCTAAT+GGG 0.392982 2_2:+27802726 Msa0246510:CDS
AGGACTAAGGAGATTAAGAA+TGG 0.401890 2_2:+27802918 Msa0246510:CDS
CATGCAAGATGGGCAATGTT+AGG 0.401951 2_2:+27802591 Msa0246510:CDS
TTGTGCAGGCTTTCACTTCA+GGG 0.409776 2_2:+27803776 Msa0246510:intron
CTGGTAGTTCACCTCCTGAA+TGG 0.410603 2_2:+27801885 Msa0246510:CDS
TCACCTCCTGAATGGCTTGA+TGG 0.411611 2_2:+27801893 Msa0246510:CDS
TAGTCCTATTGATAATTTGA+TGG 0.421103 2_2:+27802998 Msa0246510:CDS
TGATAATGAAGTGGAGGAAA+TGG 0.422619 2_2:-27801617 None:intergenic
TGAGCCATCAAATTATCAAT+AGG 0.426138 2_2:-27803002 None:intergenic
ATGCAGAGAAATAAGTCAAA+AGG 0.432712 2_2:+27801727 Msa0246510:intron
GCCCTAATGGGATGGGTTGA+AGG 0.440052 2_2:+27802738 Msa0246510:CDS
ACTACCCGGGTTAACGATAT+CGG 0.444821 2_2:-27802772 None:intergenic
GTGAACCACTTCCTCCTGAT+AGG 0.446253 2_2:+27801849 Msa0246510:CDS
TTCACTTCAGGGTAGTGCTA+TGG 0.448525 2_2:+27803787 Msa0246510:exon
TTGGTTACCCTGGTGGGCTA+TGG 0.449489 2_2:+27802844 Msa0246510:CDS
TTTCTCTTCTTATAGAATGT+TGG 0.449965 2_2:+27804234 Msa0246510:three_prime_UTR
TTTGGCCTATTTGGTAACTT+GGG 0.471715 2_2:-27802807 None:intergenic
TATTAAACACAAATAATACT+TGG 0.476158 2_2:-27804264 None:intergenic
TATCTGTTATATATGGATGA+TGG 0.477805 2_2:-27801532 None:intergenic
GATAGGCCATTGTGGTTCCC+TGG 0.481613 2_2:+27801866 Msa0246510:CDS
GATGGGTTGAAGGTCGAAGA+TGG 0.483510 2_2:+27802748 Msa0246510:CDS
CATTCAGGAGGTGAACTACC+AGG 0.483786 2_2:-27801884 None:intergenic
CTCCTGAATGGCTTGATGGC+AGG 0.485385 2_2:+27801897 Msa0246510:CDS
GGATCAAACCATAGCCCACC+AGG 0.490806 2_2:-27802852 None:intergenic
CTCAAAACCATAACAGGCTC+AGG 0.491099 2_2:-27802897 None:intergenic
GATCCTATGCAGTGGGGAAG+AGG 0.491222 2_2:+27802870 Msa0246510:CDS
GCTGAATTTCTTACTTGGAG+TGG 0.494254 2_2:-27801574 None:intergenic
TTCAACTAGCCCTAATGGGA+TGG 0.498646 2_2:+27802730 Msa0246510:CDS
AAATTCAGCCACTGCAGTAA+TGG 0.498989 2_2:+27801588 Msa0246510:exon
AGGTTGTTGATGTTGTTCCT+TGG 0.502633 2_2:-27801757 None:intergenic
CCACCAGGGTAACCAACATC+TGG 0.511783 2_2:-27802837 None:intergenic
TGAACAATGAAGAGTGTTGT+TGG 0.515682 2_2:-27802711 None:intergenic
AGAACTAATGCATGCAAGAT+GGG 0.516375 2_2:+27802581 Msa0246510:CDS
TTTCTACCACAGCATTATGC+AGG 0.521078 2_2:-27803834 None:intergenic
CAGAACTAATGCATGCAAGA+TGG 0.524297 2_2:+27802580 Msa0246510:CDS
GGCTCAATATCAACACTACC+CGG 0.525605 2_2:-27802786 None:intergenic
GGACTAAGGAGATTAAGAAT+GGG 0.534450 2_2:+27802919 Msa0246510:CDS
ATATGCAGAGCTGCATAAGA+TGG 0.545364 2_2:+27804284 Msa0246510:three_prime_UTR
AACTTCTCATGGTACAATGC+AGG 0.549392 2_2:+27802666 Msa0246510:CDS
ATGGGTTGAAGGTCGAAGAT+GGG 0.550205 2_2:+27802749 Msa0246510:CDS
TTCCTCCTGATAGGCCATTG+TGG 0.553362 2_2:+27801858 Msa0246510:CDS
AATGGCCTATCAGGAGGAAG+TGG 0.554434 2_2:-27801854 None:intergenic
ATGGTTTGATCCTATGCAGT+GGG 0.554668 2_2:+27802863 Msa0246510:CDS
TCAACTAGCCCTAATGGGAT+GGG 0.556570 2_2:+27802731 Msa0246510:CDS
AATGAAGAGTGTTGTTGGGT+CGG 0.558959 2_2:-27802706 None:intergenic
TTTCAAGCTGTTTATGTTGG+GGG 0.563088 2_2:+27802975 Msa0246510:CDS
GAACAATGAAGAGTGTTGTT+GGG 0.566160 2_2:-27802710 None:intergenic
GAACCTCTTCCCCACTGCAT+AGG 0.570209 2_2:-27802873 None:intergenic
AAACCAGATGTTGGTTACCC+TGG 0.575868 2_2:+27802834 Msa0246510:CDS
GAGAAAATGTTGACATGACC+AGG 0.576450 2_2:-27803035 None:intergenic
TATGGTTTGATCCTATGCAG+TGG 0.581606 2_2:+27802862 Msa0246510:CDS
CAGATGTTGGTTACCCTGGT+GGG 0.584280 2_2:+27802838 Msa0246510:CDS
TCTGCTGCTGCTTAACCATG+AGG 0.587348 2_2:-27801777 None:intergenic
ATGGGCCGATATCGTTAACC+CGG 0.593103 2_2:+27802767 Msa0246510:CDS
CCAAACCCAAAACCAGATGT+TGG 0.602151 2_2:+27802825 Msa0246510:CDS
TGGAAAACTTGATAATGAAG+TGG 0.604478 2_2:-27801626 None:intergenic
GGCTAAAGCCATTACTGCAG+TGG 0.605524 2_2:-27801596 None:intergenic
AAAACTTGATAATGAAGTGG+AGG 0.608373 2_2:-27801623 None:intergenic
TTTCCTAATTACAAATTACA+GGG 0.608530 2_2:-27803958 None:intergenic
CCAGATGTTGGTTACCCTGG+TGG 0.630637 2_2:+27802837 Msa0246510:CDS
GAACAACATCAACAACCTCA+TGG 0.646836 2_2:+27801762 Msa0246510:CDS
CAAAACCAAAATCACCAGGA+AGG 0.665067 2_2:-27802260 None:intergenic
AACCACAATGGCCTATCAGG+AGG 0.666114 2_2:-27801860 None:intergenic
ATTCAGGAGGTGAACTACCA+GGG 0.668133 2_2:-27801883 None:intergenic
GAACTACCAGGGAACCACAA+TGG 0.679112 2_2:-27801872 None:intergenic
TGGGCCGATATCGTTAACCC+GGG 0.686507 2_2:+27802768 Msa0246510:CDS
GCTCAATATCAACACTACCC+GGG 0.701726 2_2:-27802785 None:intergenic
CTGCCATCAAGCCATTCAGG+AGG 0.705497 2_2:-27801896 None:intergenic
GATCAAACCATAGCCCACCA+GGG 0.714446 2_2:-27802851 None:intergenic
AATGATCCTGCATAATGCTG+TGG 0.727298 2_2:+27803828 Msa0246510:three_prime_UTR
TGGTTTGATCCTATGCAGTG+GGG 0.749765 2_2:+27802864 Msa0246510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGTAAATTTTCTTAA+TGG + chr2_2:27801923-27801942 Msa0246510:intron 10.0%
!!! TTCCATTTTATTTTATATTT+TGG + chr2_2:27802159-27802178 Msa0246510:intron 10.0%
!! TTCCAAAATATAAAATAAAA+TGG - chr2_2:27802164-27802183 None:intergenic 10.0%
!! AATAATAAGTTAAAAAGAGT+TGG - chr2_2:27801659-27801678 None:intergenic 15.0%
!!! AATTTTCTTAATGGAAAATT+TGG + chr2_2:27801932-27801951 Msa0246510:intron 15.0%
!!! ATTTTTACTTTCGTTTTATT+TGG + chr2_2:27801997-27802016 Msa0246510:intron 15.0%
!! ATATAATGAGTTAAAAACAT+CGG - chr2_2:27803285-27803304 None:intergenic 15.0%
!! TTGTTAAAAAAATACTAGAA+AGG - chr2_2:27803467-27803486 None:intergenic 15.0%
!!! GATTTTTTTCAAATTATTAG+AGG - chr2_2:27804105-27804124 None:intergenic 15.0%
!! TTCAATGTAATTATATGTAT+CGG + chr2_2:27804131-27804150 Msa0246510:intron 15.0%
!! TATTAAACACAAATAATACT+TGG - chr2_2:27804267-27804286 None:intergenic 15.0%
!! ATCACTTTATCTGTTATATA+TGG - chr2_2:27801542-27801561 None:intergenic 20.0%
!! ACAATTAGAAATGCAAAAAA+AGG + chr2_2:27801812-27801831 Msa0246510:CDS 20.0%
!! AAAAAAAAGAACATCATAGT+GGG - chr2_2:27802107-27802126 None:intergenic 20.0%
!! TAAAAAAAAGAACATCATAG+TGG - chr2_2:27802108-27802127 None:intergenic 20.0%
!! TTATTTGAGCAAAATAATCA+AGG + chr2_2:27803488-27803507 Msa0246510:intron 20.0%
!! TTTCCTAATTACAAATTACA+GGG - chr2_2:27803961-27803980 None:intergenic 20.0%
! TATCTGTTATATATGGATGA+TGG - chr2_2:27801535-27801554 None:intergenic 25.0%
! CATATTTACTCTTTACCATT+TGG - chr2_2:27802072-27802091 None:intergenic 25.0%
! CAAATGGTAAAGAGTAAATA+TGG + chr2_2:27802070-27802089 Msa0246510:intron 25.0%
! GTTTAATGATGATAAGACTT+TGG - chr2_2:27802198-27802217 None:intergenic 25.0%
!!! CCAATTTTTTCAAGTATTTC+TGG - chr2_2:27802636-27802655 None:intergenic 25.0%
! CCAGAAATACTTGAAAAAAT+TGG + chr2_2:27802633-27802652 Msa0246510:CDS 25.0%
!! TAGTCCTATTGATAATTTGA+TGG + chr2_2:27802998-27803017 Msa0246510:CDS 25.0%
!!! TTTTAACTCATTATATGACG+TGG + chr2_2:27803289-27803308 Msa0246510:intron 25.0%
! AAAATTCATGTAGCTTCTAT+TGG - chr2_2:27803574-27803593 None:intergenic 25.0%
!!! TACATGAATTTTTAAGCGTT+AGG + chr2_2:27803582-27803601 Msa0246510:intron 25.0%
!!! AATTTTTAAGCGTTAGGTTA+GGG + chr2_2:27803588-27803607 Msa0246510:intron 25.0%
! CTTGTGTCAATTGTAAAATT+CGG - chr2_2:27803892-27803911 None:intergenic 25.0%
!! TTTCCCTGTAATTTGTAATT+AGG + chr2_2:27803955-27803974 Msa0246510:three_prime_UTR 25.0%
! CTTTCCTAATTACAAATTAC+AGG - chr2_2:27803962-27803981 None:intergenic 25.0%
!! TTTCAAATTATTAGAGGTGT+TGG - chr2_2:27804099-27804118 None:intergenic 25.0%
! TTTCTCTTCTTATAGAATGT+TGG + chr2_2:27804234-27804253 Msa0246510:three_prime_UTR 25.0%
!! AAAACTTGATAATGAAGTGG+AGG - chr2_2:27801626-27801645 None:intergenic 30.0%
!! TGGAAAACTTGATAATGAAG+TGG - chr2_2:27801629-27801648 None:intergenic 30.0%
! CATTATCAAGTTTTCCAAAC+AGG + chr2_2:27801632-27801651 Msa0246510:CDS 30.0%
ATGCAGAGAAATAAGTCAAA+AGG + chr2_2:27801727-27801746 Msa0246510:intron 30.0%
!! TGGTAAACCAAAAGTATCTT+CGG + chr2_2:27802017-27802036 Msa0246510:intron 30.0%
TGCTACACTTTATAATGTGT+TGG + chr2_2:27802329-27802348 Msa0246510:intron 30.0%
TCATAGGTTAATCAGTTACT+TGG - chr2_2:27802510-27802529 None:intergenic 30.0%
ACCTATGAATTAATCCTTTC+AGG + chr2_2:27802522-27802541 Msa0246510:intron 30.0%
CCTATGAATTAATCCTTTCA+GGG + chr2_2:27802523-27802542 Msa0246510:intron 30.0%
GTTATGTCAAAAACTTCTCA+TGG + chr2_2:27802655-27802674 Msa0246510:CDS 30.0%
!! TGTTTTCAAGCTGTTTATGT+TGG + chr2_2:27802972-27802991 Msa0246510:CDS 30.0%
!! GTTTTCAAGCTGTTTATGTT+GGG + chr2_2:27802973-27802992 Msa0246510:CDS 30.0%
!! TTTTCAAGCTGTTTATGTTG+GGG + chr2_2:27802974-27802993 Msa0246510:CDS 30.0%
TGAGCCATCAAATTATCAAT+AGG - chr2_2:27803005-27803024 None:intergenic 30.0%
GGAAATCTACAAATGAAACT+CGG - chr2_2:27803103-27803122 None:intergenic 30.0%
!! TCCAATCAATTAGCTGTTTT+TGG + chr2_2:27803120-27803139 Msa0246510:intron 30.0%
ACCAAAAACAGCTAATTGAT+TGG - chr2_2:27803124-27803143 None:intergenic 30.0%
GTTGTATATTGGAGTTTAGT+TGG - chr2_2:27803350-27803369 None:intergenic 30.0%
TAAACTCCAATATACAACAG+AGG + chr2_2:27803352-27803371 Msa0246510:intron 30.0%
!! GAATTTTTAAGCGTTAGGTT+AGG + chr2_2:27803587-27803606 Msa0246510:intron 30.0%
AAACAATATGCACACTAACT+AGG + chr2_2:27803662-27803681 Msa0246510:intron 30.0%
!!! ACAAATCAATGTTTTGATCC+CGG + chr2_2:27803705-27803724 Msa0246510:intron 30.0%
AAGCGCATTACATGTAATAA+TGG - chr2_2:27803863-27803882 None:intergenic 30.0%
! TGATAATGAAGTGGAGGAAA+TGG - chr2_2:27801620-27801639 None:intergenic 35.0%
TAAAAAGAGTTGGACCTGTT+TGG - chr2_2:27801649-27801668 None:intergenic 35.0%
! AGTCAAAAGGTTTTACACCA+AGG + chr2_2:27801740-27801759 Msa0246510:CDS 35.0%
AAATCAAACCCTGAACCAAA+TGG + chr2_2:27802054-27802073 Msa0246510:intron 35.0%
! ACTCTTTACCATTTGGTTCA+GGG - chr2_2:27802065-27802084 None:intergenic 35.0%
! TACTCTTTACCATTTGGTTC+AGG - chr2_2:27802066-27802085 None:intergenic 35.0%
AAGACATACCTAATCCAAGA+GGG - chr2_2:27802287-27802306 None:intergenic 35.0%
TAAGACATACCTAATCCAAG+AGG - chr2_2:27802288-27802307 None:intergenic 35.0%
ACGTCTTCAATATGAAGTGT+CGG - chr2_2:27802364-27802383 None:intergenic 35.0%
TGTCAGACATCGATATGTAT+CGG - chr2_2:27802396-27802415 None:intergenic 35.0%
! TATTTTCTCTGACTACGTGT+TGG + chr2_2:27802451-27802470 Msa0246510:intron 35.0%
TAGGTTAATCAGTTACTTGG+TGG - chr2_2:27802507-27802526 None:intergenic 35.0%
CCCTGAAAGGATTAATTCAT+AGG - chr2_2:27802526-27802545 None:intergenic 35.0%
CAGATCCAGAGTTACTAAAA+TGG + chr2_2:27802547-27802566 Msa0246510:intron 35.0%
!! GCTAACCATTTTAGTAACTC+TGG - chr2_2:27802555-27802574 None:intergenic 35.0%
AGAACTAATGCATGCAAGAT+GGG + chr2_2:27802581-27802600 Msa0246510:CDS 35.0%
!! GAACAATGAAGAGTGTTGTT+GGG - chr2_2:27802713-27802732 None:intergenic 35.0%
!! TGAACAATGAAGAGTGTTGT+TGG - chr2_2:27802714-27802733 None:intergenic 35.0%
ATTGTTCAACTAGCCCTAAT+GGG + chr2_2:27802726-27802745 Msa0246510:CDS 35.0%
! TTTGGCCTATTTGGTAACTT+GGG - chr2_2:27802810-27802829 None:intergenic 35.0%
TTAGTCCTCAAAACCATAAC+AGG - chr2_2:27802906-27802925 None:intergenic 35.0%
!!! TGTTATGGTTTTGAGGACTA+AGG + chr2_2:27802905-27802924 Msa0246510:CDS 35.0%
AGGACTAAGGAGATTAAGAA+TGG + chr2_2:27802918-27802937 Msa0246510:CDS 35.0%
GGACTAAGGAGATTAAGAAT+GGG + chr2_2:27802919-27802938 Msa0246510:CDS 35.0%
!! TTGCTATGCTTGCTTTTCTA+GGG + chr2_2:27802946-27802965 Msa0246510:CDS 35.0%
TTTCAAGCTGTTTATGTTGG+GGG + chr2_2:27802975-27802994 Msa0246510:CDS 35.0%
! TGGTCATGTCAACATTTTCT+CGG + chr2_2:27803037-27803056 Msa0246510:CDS 35.0%
! GCTTCTATTGGAAATGGATT+AGG - chr2_2:27803562-27803581 None:intergenic 35.0%
CATGTAGCTTCTATTGGAAA+TGG - chr2_2:27803568-27803587 None:intergenic 35.0%
TCATAGTTTAACCGATGCAA+AGG - chr2_2:27804022-27804041 None:intergenic 35.0%
ATCGGTTAAACTATGAAGCA+TGG + chr2_2:27804026-27804045 Msa0246510:intron 35.0%
AGTTGTGGTTTATTGAAGCT+CGG - chr2_2:27804204-27804223 None:intergenic 35.0%
AGAAACACAAAAGACAGTTG+TGG - chr2_2:27804219-27804238 None:intergenic 35.0%
GCTGAATTTCTTACTTGGAG+TGG - chr2_2:27801577-27801596 None:intergenic 40.0%
CAGTGGCTGAATTTCTTACT+TGG - chr2_2:27801582-27801601 None:intergenic 40.0%
AAATTCAGCCACTGCAGTAA+TGG + chr2_2:27801588-27801607 Msa0246510:exon 40.0%
AGGTTGTTGATGTTGTTCCT+TGG - chr2_2:27801760-27801779 None:intergenic 40.0%
GAACAACATCAACAACCTCA+TGG + chr2_2:27801762-27801781 Msa0246510:CDS 40.0%
CAAAACCAAAATCACCAGGA+AGG - chr2_2:27802263-27802282 None:intergenic 40.0%
!!! GATTTTGGTTTTGACCCTCT+TGG + chr2_2:27802270-27802289 Msa0246510:intron 40.0%
CTTCATATTGAAGACGTGTC+CGG + chr2_2:27802367-27802386 Msa0246510:intron 40.0%
! TGGTGGTGAATCAATAGACA+CGG - chr2_2:27802490-27802509 None:intergenic 40.0%
CAGAACTAATGCATGCAAGA+TGG + chr2_2:27802580-27802599 Msa0246510:CDS 40.0%
AACTTCTCATGGTACAATGC+AGG + chr2_2:27802666-27802685 Msa0246510:CDS 40.0%
!! AATGAAGAGTGTTGTTGGGT+CGG - chr2_2:27802709-27802728 None:intergenic 40.0%
CATTGTTCAACTAGCCCTAA+TGG + chr2_2:27802725-27802744 Msa0246510:CDS 40.0%
TTGAGCCCAAGTTACCAAAT+AGG + chr2_2:27802802-27802821 Msa0246510:CDS 40.0%
! GTTTGGCCTATTTGGTAACT+TGG - chr2_2:27802811-27802830 None:intergenic 40.0%
!!! GGTAACCAACATCTGGTTTT+GGG - chr2_2:27802833-27802852 None:intergenic 40.0%
TATGGTTTGATCCTATGCAG+TGG + chr2_2:27802862-27802881 Msa0246510:CDS 40.0%
ATGGTTTGATCCTATGCAGT+GGG + chr2_2:27802863-27802882 Msa0246510:CDS 40.0%
!! CTTGCTATGCTTGCTTTTCT+AGG + chr2_2:27802945-27802964 Msa0246510:CDS 40.0%
GAGAAAATGTTGACATGACC+AGG - chr2_2:27803038-27803057 None:intergenic 40.0%
CATCGGTAAATGCATGTGTA+AGG - chr2_2:27803268-27803287 None:intergenic 40.0%
GGATCACCTCTGTTGTATAT+TGG - chr2_2:27803361-27803380 None:intergenic 40.0%
!! ACATTGATTTGTCGCGTTGT+GGG - chr2_2:27803697-27803716 None:intergenic 40.0%
!! AACATTGATTTGTCGCGTTG+TGG - chr2_2:27803698-27803717 None:intergenic 40.0%
TACTTCTAACATGTCTCAGC+CGG - chr2_2:27803727-27803746 None:intergenic 40.0%
! ACAGAAGTTTTTGCTTGTGC+AGG + chr2_2:27803762-27803781 Msa0246510:intron 40.0%
AATGATCCTGCATAATGCTG+TGG + chr2_2:27803828-27803847 Msa0246510:three_prime_UTR 40.0%
TTTCTACCACAGCATTATGC+AGG - chr2_2:27803837-27803856 None:intergenic 40.0%
CTCGATCATTTCCTTTGCAT+CGG + chr2_2:27804008-27804027 Msa0246510:intron 40.0%
TATGAAGCATGGATACGAAC+AGG + chr2_2:27804037-27804056 Msa0246510:intron 40.0%
ATGAAGCATGGATACGAACA+GGG + chr2_2:27804038-27804057 Msa0246510:intron 40.0%
!! TATATGTATCGGTGTCGTGT+CGG + chr2_2:27804142-27804161 Msa0246510:intron 40.0%
ATATGCAGAGCTGCATAAGA+TGG + chr2_2:27804284-27804303 Msa0246510:three_prime_UTR 40.0%
ATTCAGGAGGTGAACTACCA+GGG - chr2_2:27801886-27801905 None:intergenic 45.0%
! ACATCATAGTGGGACACAAG+TGG - chr2_2:27802097-27802116 None:intergenic 45.0%
GGGTCAAAACCAAAATCACC+AGG - chr2_2:27802267-27802286 None:intergenic 45.0%
!! GGTTTTGACCCTCTTGGATT+AGG + chr2_2:27802276-27802295 Msa0246510:intron 45.0%
CATCGATATGTATCGGACAC+CGG - chr2_2:27802389-27802408 None:intergenic 45.0%
CATGCAAGATGGGCAATGTT+AGG + chr2_2:27802591-27802610 Msa0246510:CDS 45.0%
!! TGGGCAATGTTAGGAGTATC+AGG + chr2_2:27802600-27802619 Msa0246510:CDS 45.0%
TTCAACTAGCCCTAATGGGA+TGG + chr2_2:27802730-27802749 Msa0246510:CDS 45.0%
TCAACTAGCCCTAATGGGAT+GGG + chr2_2:27802731-27802750 Msa0246510:CDS 45.0%
ACCTTCAACCCATCCCATTA+GGG - chr2_2:27802742-27802761 None:intergenic 45.0%
! ATGGGTTGAAGGTCGAAGAT+GGG + chr2_2:27802749-27802768 Msa0246510:CDS 45.0%
ACTACCCGGGTTAACGATAT+CGG - chr2_2:27802775-27802794 None:intergenic 45.0%
GCTCAATATCAACACTACCC+GGG - chr2_2:27802788-27802807 None:intergenic 45.0%
GGCTCAATATCAACACTACC+CGG - chr2_2:27802789-27802808 None:intergenic 45.0%
!!! GGTTTTGGGTTTGGCCTATT+TGG - chr2_2:27802819-27802838 None:intergenic 45.0%
!!! CCAACATCTGGTTTTGGGTT+TGG - chr2_2:27802828-27802847 None:intergenic 45.0%
CCAAACCCAAAACCAGATGT+TGG + chr2_2:27802825-27802844 Msa0246510:CDS 45.0%
!! GGGTAACCAACATCTGGTTT+TGG - chr2_2:27802834-27802853 None:intergenic 45.0%
! AAACCAGATGTTGGTTACCC+TGG + chr2_2:27802834-27802853 Msa0246510:CDS 45.0%
TGGTTTGATCCTATGCAGTG+GGG + chr2_2:27802864-27802883 Msa0246510:CDS 45.0%
CTCAAAACCATAACAGGCTC+AGG - chr2_2:27802900-27802919 None:intergenic 45.0%
!! CTGAGCCTGTTATGGTTTTG+AGG + chr2_2:27802898-27802917 Msa0246510:CDS 45.0%
TAGCTTCGCGACTATGAATG+TGG + chr2_2:27803191-27803210 Msa0246510:intron 45.0%
AGGCATGACACATGACTACA+TGG - chr2_2:27803382-27803401 None:intergenic 45.0%
TCATGCCTTACTGTTGAGAG+CGG + chr2_2:27803394-27803413 Msa0246510:intron 45.0%
ACTTCTAACATGTCTCAGCC+GGG - chr2_2:27803726-27803745 None:intergenic 45.0%
TTGTGCAGGCTTTCACTTCA+GGG + chr2_2:27803776-27803795 Msa0246510:intron 45.0%
TTCACTTCAGGGTAGTGCTA+TGG + chr2_2:27803787-27803806 Msa0246510:exon 45.0%
GGCTAAAGCCATTACTGCAG+TGG - chr2_2:27801599-27801618 None:intergenic 50.0%
! TCTGCTGCTGCTTAACCATG+AGG - chr2_2:27801780-27801799 None:intergenic 50.0%
GTGAACCACTTCCTCCTGAT+AGG + chr2_2:27801849-27801868 Msa0246510:CDS 50.0%
AATGGCCTATCAGGAGGAAG+TGG - chr2_2:27801857-27801876 None:intergenic 50.0%
TTCCTCCTGATAGGCCATTG+TGG + chr2_2:27801858-27801877 Msa0246510:CDS 50.0%
AACCACAATGGCCTATCAGG+AGG - chr2_2:27801863-27801882 None:intergenic 50.0%
GAACTACCAGGGAACCACAA+TGG - chr2_2:27801875-27801894 None:intergenic 50.0%
CATTCAGGAGGTGAACTACC+AGG - chr2_2:27801887-27801906 None:intergenic 50.0%
CTGGTAGTTCACCTCCTGAA+TGG + chr2_2:27801885-27801904 Msa0246510:CDS 50.0%
TCACCTCCTGAATGGCTTGA+TGG + chr2_2:27801893-27801912 Msa0246510:CDS 50.0%
TACCTGCCATCAAGCCATTC+AGG - chr2_2:27801902-27801921 None:intergenic 50.0%
! GTGCGTGCCGAAGATACTTT+TGG - chr2_2:27802027-27802046 None:intergenic 50.0%
TCACCAGGAAGGCTGCAATT+GGG - chr2_2:27802252-27802271 None:intergenic 50.0%
ATCACCAGGAAGGCTGCAAT+TGG - chr2_2:27802253-27802272 None:intergenic 50.0%
! TGCAGCCTTCCTGGTGATTT+TGG + chr2_2:27802255-27802274 Msa0246510:intron 50.0%
ACTCTGGATCTGACCCTGAA+AGG - chr2_2:27802539-27802558 None:intergenic 50.0%
GACCTTCAACCCATCCCATT+AGG - chr2_2:27802743-27802762 None:intergenic 50.0%
!! GATGGGTTGAAGGTCGAAGA+TGG + chr2_2:27802748-27802767 Msa0246510:CDS 50.0%
ATGGGCCGATATCGTTAACC+CGG + chr2_2:27802767-27802786 Msa0246510:CDS 50.0%
! CAGATGTTGGTTACCCTGGT+GGG + chr2_2:27802838-27802857 Msa0246510:CDS 50.0%
GATCAAACCATAGCCCACCA+GGG - chr2_2:27802854-27802873 None:intergenic 50.0%
AGGTTCACCTGAGCCTGTTA+TGG + chr2_2:27802890-27802909 Msa0246510:CDS 50.0%
ATGGCTCATCTTGCTGATCC+TGG + chr2_2:27803017-27803036 Msa0246510:CDS 50.0%
TCTCTCCGCTCTCAACAGTA+AGG - chr2_2:27803402-27803421 None:intergenic 50.0%
!! TTGATTTGTCGCGTTGTGGG+AGG - chr2_2:27803694-27803713 None:intergenic 50.0%
CTTGTGCAGGCTTTCACTTC+AGG + chr2_2:27803775-27803794 Msa0246510:intron 50.0%
ATGGATACGAACAGGGACAC+CGG + chr2_2:27804045-27804064 Msa0246510:intron 50.0%
GGGAACCACAATGGCCTATC+AGG - chr2_2:27801866-27801885 None:intergenic 55.0%
GATAGGCCATTGTGGTTCCC+TGG + chr2_2:27801866-27801885 Msa0246510:CDS 55.0%
CTGCCATCAAGCCATTCAGG+AGG - chr2_2:27801899-27801918 None:intergenic 55.0%
! CTCCTGAATGGCTTGATGGC+AGG + chr2_2:27801897-27801916 Msa0246510:CDS 55.0%
CTTCCCAATTGCAGCCTTCC+TGG + chr2_2:27802246-27802265 Msa0246510:intron 55.0%
!! GCCCTAATGGGATGGGTTGA+AGG + chr2_2:27802738-27802757 Msa0246510:CDS 55.0%
TGGGCCGATATCGTTAACCC+GGG + chr2_2:27802768-27802787 Msa0246510:CDS 55.0%
CCACCAGGGTAACCAACATC+TGG - chr2_2:27802840-27802859 None:intergenic 55.0%
! CCAGATGTTGGTTACCCTGG+TGG + chr2_2:27802837-27802856 Msa0246510:CDS 55.0%
!! TTGGTTACCCTGGTGGGCTA+TGG + chr2_2:27802844-27802863 Msa0246510:CDS 55.0%
GGATCAAACCATAGCCCACC+AGG - chr2_2:27802855-27802874 None:intergenic 55.0%
GATCCTATGCAGTGGGGAAG+AGG + chr2_2:27802870-27802889 Msa0246510:CDS 55.0%
GAACCTCTTCCCCACTGCAT+AGG - chr2_2:27802876-27802895 None:intergenic 55.0%
!! TCGTGTCGGTGTCAGACACT+GGG + chr2_2:27804156-27804175 Msa0246510:intron 55.0%
GTCAGTGTCCGTGTCGTGTC+CGG - chr2_2:27804067-27804086 None:intergenic 60.0%
!! GTCGTGTCGGTGTCAGACAC+TGG + chr2_2:27804155-27804174 Msa0246510:intron 60.0%
ACTGGGACACGCCTAATGCG+AGG + chr2_2:27804173-27804192 Msa0246510:intron 60.0%
GCTCGGAGACTCCTCGCATT+AGG - chr2_2:27804187-27804206 None:intergenic 60.0%
CAGGGACACCGGACACGACA+CGG + chr2_2:27804056-27804075 Msa0246510:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 27801524 27804310 27801524 ID=Msa0246510;Name=Msa0246510
chr2_2 mRNA 27801524 27804310 27801524 ID=Msa0246510-mRNA-1;Parent=Msa0246510;Name=Msa0246510-mRNA-1;_AED=0.13;_eAED=0.13;_QI=83|0.8|0.66|1|0.6|0.66|6|295|253
chr2_2 exon 27801524 27801653 27801524 ID=Msa0246510-mRNA-1:exon:10100;Parent=Msa0246510-mRNA-1
chr2_2 exon 27801733 27801918 27801733 ID=Msa0246510-mRNA-1:exon:10101;Parent=Msa0246510-mRNA-1
chr2_2 exon 27802260 27802267 27802260 ID=Msa0246510-mRNA-1:exon:10102;Parent=Msa0246510-mRNA-1
chr2_2 exon 27802556 27803058 27802556 ID=Msa0246510-mRNA-1:exon:10103;Parent=Msa0246510-mRNA-1
chr2_2 exon 27803784 27804007 27803784 ID=Msa0246510-mRNA-1:exon:10104;Parent=Msa0246510-mRNA-1
chr2_2 exon 27804222 27804310 27804222 ID=Msa0246510-mRNA-1:exon:10105;Parent=Msa0246510-mRNA-1
chr2_2 five_prime_UTR 27801524 27801606 27801524 ID=Msa0246510-mRNA-1:five_prime_utr;Parent=Msa0246510-mRNA-1
chr2_2 CDS 27801607 27801653 27801607 ID=Msa0246510-mRNA-1:cds;Parent=Msa0246510-mRNA-1
chr2_2 CDS 27801733 27801918 27801733 ID=Msa0246510-mRNA-1:cds;Parent=Msa0246510-mRNA-1
chr2_2 CDS 27802260 27802267 27802260 ID=Msa0246510-mRNA-1:cds;Parent=Msa0246510-mRNA-1
chr2_2 CDS 27802556 27803058 27802556 ID=Msa0246510-mRNA-1:cds;Parent=Msa0246510-mRNA-1
chr2_2 CDS 27803784 27803801 27803784 ID=Msa0246510-mRNA-1:cds;Parent=Msa0246510-mRNA-1
chr2_2 three_prime_UTR 27803802 27804007 27803802 ID=Msa0246510-mRNA-1:three_prime_utr;Parent=Msa0246510-mRNA-1
chr2_2 three_prime_UTR 27804222 27804310 27804222 ID=Msa0246510-mRNA-1:three_prime_utr;Parent=Msa0246510-mRNA-1
Gene Sequence

>Msa0246510

ATGGCTTTAGCCATTTCCTCCACTTCATTATCAAGTTTTCCAAACAGAGAAATAAGTCAAAAGGTTTTACACCAAGGAACAACATCAACAACCTCATGGTTAAGCAGCAGCAGAAGAAGAACACTTACAATTAGAAATGCAAAAAAAGGAGTGTCAGATGTTTGTGAACCACTTCCTCCTGATAGGCCATTGTGGTTCCCTGGTAGTTCACCTCCTGAATGGCTTGATGGCAGCCTTCCTGAGTTACTAAAATGGTTAGCACAAGCAGAACTAATGCATGCAAGATGGGCAATGTTAGGAGTATCAGGAATTTTAATTCCAGAAATACTTGAAAAAATTGGTTATGTCAAAAACTTCTCATGGTACAATGCAGGTTCAGTAGAATATTTCGCCGACCCAACAACACTCTTCATTGTTCAACTAGCCCTAATGGGATGGGTTGAAGGTCGAAGATGGGCCGATATCGTTAACCCGGGTAGTGTTGATATTGAGCCCAAGTTACCAAATAGGCCAAACCCAAAACCAGATGTTGGTTACCCTGGTGGGCTATGGTTTGATCCTATGCAGTGGGGAAGAGGTTCACCTGAGCCTGTTATGGTTTTGAGGACTAAGGAGATTAAGAATGGGAGACTTGCTATGCTTGCTTTTCTAGGGTTTTGTTTTCAAGCTGTTTATGTTGGGGGTAGTCCTATTGATAATTTGATGGCTCATCTTGCTGATCCTGGTCATGTCAACATTTTCTCGGCTTTCACTTCAGGGTAG

Protein sequence

>Msa0246510

MALAISSTSLSSFPNREISQKVLHQGTTSTTSWLSSSRRRTLTIRNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPELLKWLAQAELMHARWAMLGVSGILIPEILEKIGYVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAFTSG*