AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1046880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1046880 MtrunA17_Chr7g0214741 98.646 443 6 0 1 443 1 443 0.0 892
Msa1046880 MtrunA17_Chr8g0385641 69.149 376 115 1 62 436 34 409 0.0 546
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1046880 AT5G13420.1 79.657 408 83 0 35 442 30 437 0.0 658

Find 136 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACAGGAGCCTTTGCTTCT+TGG 0.121680 7_2:+7503209 None:intergenic
TTATATGTTGCTCCTCTTAT+TGG 0.160550 7_2:-7503147 Msa1046880:CDS
CCACGTAGATCAAGGGCTTC+TGG 0.196646 7_2:+7503426 None:intergenic
CATTGTTAGTCTGAAATTCT+TGG 0.237216 7_2:-7502201 Msa1046880:three_prime_UTR
GACAAGATGCTTGAGAAAAT+TGG 0.255255 7_2:-7503453 Msa1046880:CDS
AACAATGGCTTCTTCACTTT+CGG 0.265437 7_2:-7507043 Msa1046880:exon
CACAGATGATTTATCATTCT+AGG 0.278158 7_2:+7502233 None:intergenic
TTGGACGGTCTGGAGGCATC+TGG 0.296116 7_2:-7503543 Msa1046880:CDS
AGCAGTAGCCCAAGCAGCAC+TGG 0.319222 7_2:-7503295 Msa1046880:CDS
ACATAAAATGACATCAGATT+TGG 0.322012 7_2:+7501979 None:intergenic
TGCATGTGTCCCTTCAATTA+AGG 0.343064 7_2:-7504119 Msa1046880:CDS
CTTATTGAAAGTGGTGTTAG+AGG 0.347970 7_2:-7505241 Msa1046880:CDS
GATCTGGATCGAAGAGATTC+TGG 0.349569 7_2:+7506979 None:intergenic
TCCAATCAATACCCAACTTC+TGG 0.350106 7_2:+7502471 None:intergenic
TGAAGAACCGTCCTCTTTGC+AGG 0.353042 7_2:+7505337 None:intergenic
CACGTAGATCAAGGGCTTCT+GGG 0.353425 7_2:+7503427 None:intergenic
CAAGTGAGGTGTGAACTTTA+TGG 0.357425 7_2:-7502339 Msa1046880:exon
TTGGGCCAGAAAATTTCTTT+TGG 0.367465 7_2:+7503259 None:intergenic
GTGCTTACAATGATCAATTC+AGG 0.381631 7_2:-7504921 Msa1046880:intron
TTGCATGGTGCAATTATTGC+AGG 0.385691 7_2:+7502111 None:intergenic
TTACAGCTTCATATCTTTCA+AGG 0.387825 7_2:+7503577 None:intergenic
CCTTCTCCTGCAGTGAATCC+AGG 0.391080 7_2:+7502384 None:intergenic
CGATAAATGCTTGAAGGGCT+TGG 0.394216 7_2:+7502561 None:intergenic
AACACCTTACTTATTTACTT+TGG 0.395720 7_2:-7507291 Msa1046880:five_prime_UTR
TTTCCATGTACTTTGTATGC+TGG 0.396835 7_2:-7502153 Msa1046880:three_prime_UTR
TCCAGAAGTTGGGTATTGAT+TGG 0.397913 7_2:-7502472 Msa1046880:CDS
AAGACATTGACAGTGCATAC+TGG 0.398567 7_2:-7504342 Msa1046880:CDS
TGTTGGTTCACAGCTTGAAT+TGG 0.398912 7_2:-7502444 Msa1046880:CDS
CTGGTAAGCCAGTGCTGCTT+GGG 0.405777 7_2:+7503287 None:intergenic
GGAATCTTAATATACACATT+GGG 0.407298 7_2:+7504151 None:intergenic
GAACCATAGAAGCTGCAAAA+TGG 0.407939 7_2:-7504195 Msa1046880:CDS
TAATCTCTGCCGACCCGTTA+CGG 0.408310 7_2:-7505275 Msa1046880:CDS
TGATGCTTACTTGGACGGTC+TGG 0.408914 7_2:-7503553 Msa1046880:CDS
GCTGGTAAGCCAGTGCTGCT+TGG 0.416878 7_2:+7503286 None:intergenic
CTAACACCACTTTCAATAAG+AGG 0.417790 7_2:+7505244 None:intergenic
AGCTGTAATTGATGCTTACT+TGG 0.425218 7_2:-7503562 Msa1046880:CDS
GCGATAACTTCCTTAATTGA+AGG 0.430140 7_2:+7504109 None:intergenic
TAACTAGAGCTTCCCACCTT+GGG 0.431657 7_2:+7503241 None:intergenic
TGCAAAATGGCTTCATAAAG+TGG 0.434093 7_2:-7504182 Msa1046880:CDS
AATAAGAGGAGCAACATATA+AGG 0.440098 7_2:+7503149 None:intergenic
GAAAGCCTTTGACAGCCTCC+TGG 0.444184 7_2:-7502402 Msa1046880:CDS
AAAGAAGCGCGGTTTGTGTT+TGG 0.445528 7_2:+7507003 None:intergenic
CGTGATCGATAAATGCTTGA+AGG 0.447597 7_2:+7502555 None:intergenic
TGCTCACAAACAGATGGAAA+TGG 0.453362 7_2:-7505364 Msa1046880:CDS
ATGTGATGGCTTACGGTGTC+GGG 0.454815 7_2:+7503123 None:intergenic
GGGACACATGCAGCTGTAGC+TGG 0.457283 7_2:+7504130 None:intergenic
CACGTTCACACTTATTCCAT+TGG 0.457925 7_2:+7504087 None:intergenic
TGCAGGGAACTTGTGCAAGC+AGG 0.463242 7_2:-7504367 Msa1046880:intron
AATAAAATATGTAAGGTTTG+AGG 0.465057 7_2:+7507222 None:intergenic
TTAATAAAAGACAGCGGCTA+AGG 0.467268 7_2:-7502278 Msa1046880:three_prime_UTR
TACAATGCTATCCAGAAGTT+GGG 0.474420 7_2:-7502482 Msa1046880:CDS
GTAATGTATGATGCCGCGTA+CGG 0.474741 7_2:-7502302 Msa1046880:three_prime_UTR
ATACAATGCTATCCAGAAGT+TGG 0.476685 7_2:-7502483 Msa1046880:CDS
AATGCTTGAAGGGCTTGGTC+TGG 0.476962 7_2:+7502566 None:intergenic
AGAGGAATCAGATCCGTAAC+GGG 0.477720 7_2:+7505262 None:intergenic
TTAACTAGAGCTTCCCACCT+TGG 0.478200 7_2:+7503240 None:intergenic
TCGATCACGGTGCTGTAGCC+AGG 0.478289 7_2:-7502541 Msa1046880:CDS
GTAAATAAGTAAGGTGTTCG+AGG 0.483157 7_2:+7507296 None:intergenic
GGAGCAACATATAAGGTGTC+AGG 0.483934 7_2:+7503156 None:intergenic
CCAAGAAGCAAAGGCTCCTG+TGG 0.487273 7_2:-7503209 Msa1046880:CDS
AACTCCAAAGTAAATAAGTA+AGG 0.490041 7_2:+7507287 None:intergenic
CTGATTCCTCTTATTGAAAG+TGG 0.490876 7_2:-7505250 Msa1046880:CDS
TGCATTTGAGTCTATTGTCC+TGG 0.491718 7_2:+7502523 None:intergenic
TTACCTTGCCACGTAGATCA+AGG 0.493289 7_2:+7503418 None:intergenic
GGTATTGATTGGAGCTATGT+TGG 0.495472 7_2:-7502461 Msa1046880:CDS
TCAATTTATGATCAAACTGA+TGG 0.501880 7_2:-7504274 Msa1046880:CDS
CCTCGTGAACTTAGCTCAGT+TGG 0.505210 7_2:+7507183 None:intergenic
CGATAACTTCCTTAATTGAA+GGG 0.507817 7_2:+7504110 None:intergenic
ATTAAGGAAGTTATCGCCAA+TGG 0.509849 7_2:-7504103 Msa1046880:CDS
TAATGTATGATGCCGCGTAC+GGG 0.510892 7_2:-7502301 Msa1046880:three_prime_UTR
CAGCCTCCTGGATTCACTGC+AGG 0.514881 7_2:-7502390 Msa1046880:CDS
TGGAATCTTAATATACACAT+TGG 0.517086 7_2:+7504150 None:intergenic
TTTCTGTTGAAGTATCTCCT+AGG 0.521652 7_2:-7504237 Msa1046880:CDS
AGAAACAAGGGCAGAGTCCA+TGG 0.521731 7_2:-7505303 Msa1046880:CDS
TATAAGGTGTCAGGATAGGC+AGG 0.522356 7_2:+7503165 None:intergenic
CATGATCTTTATGAGAAACA+AGG 0.525914 7_2:-7505316 Msa1046880:CDS
CCTGGATTCACTGCAGGAGA+AGG 0.526429 7_2:-7502384 Msa1046880:CDS
TAATAAAAGACAGCGGCTAA+GGG 0.533896 7_2:-7502277 Msa1046880:three_prime_UTR
GACTGTCCGATCTAAATCAA+TGG 0.535269 7_2:-7502077 Msa1046880:three_prime_UTR
AGACATTGACAGTGCATACT+GGG 0.538449 7_2:-7504341 Msa1046880:CDS
CTCGTTCTTTGTCAGTCGAG+TGG 0.539822 7_2:-7503487 Msa1046880:CDS
TAACGCTGGTTGAAGCCCAC+AGG 0.542262 7_2:+7503193 None:intergenic
GAAGGCAAAATCTCTTAAGC+TGG 0.547270 7_2:-7502366 Msa1046880:CDS
TACAGCTTCATATCTTTCAA+GGG 0.547625 7_2:+7503578 None:intergenic
GCAGGGAACTTGTGCAAGCA+GGG 0.547808 7_2:-7504366 Msa1046880:intron
ACCTCAAAGAAGTTACAAAA+CGG 0.548564 7_2:+7506869 None:intergenic
AATGTGATGGCTTACGGTGT+CGG 0.552602 7_2:+7503122 None:intergenic
GTAATTGATGCTTACTTGGA+CGG 0.553368 7_2:-7503558 Msa1046880:CDS
TGGACGGTCTGGAGGCATCT+GGG 0.554082 7_2:-7503542 Msa1046880:CDS
GGTTCACAGCTTGAATTGGA+AGG 0.554895 7_2:-7502440 Msa1046880:CDS
CTTAAGCTGGTCAGCAAGTG+AGG 0.557674 7_2:-7502353 Msa1046880:exon
AAACCAGCATACAAAGTACA+TGG 0.559423 7_2:+7502150 None:intergenic
TACCTTGCCACGTAGATCAA+GGG 0.561590 7_2:+7503419 None:intergenic
TCAGTATCCTCAGCAAGCCT+AGG 0.564022 7_2:+7504220 None:intergenic
CCTCTGCCATTGATTTAGAT+CGG 0.567391 7_2:+7502071 None:intergenic
TGCTTACTTGGACGGTCTGG+AGG 0.568623 7_2:-7503550 Msa1046880:CDS
TGAATCCAGGAGGCTGTCAA+AGG 0.570972 7_2:+7502397 None:intergenic
AGTCGAGATTTAAAATTGCA+TGG 0.571287 7_2:+7502096 None:intergenic
CTTCAAGCATTTATCGATCA+CGG 0.571494 7_2:-7502554 Msa1046880:CDS
TCAAATGCATCTGAAGCTGA+AGG 0.573568 7_2:-7502509 Msa1046880:CDS
TTGAAGGGCTTGGTCTGGCA+TGG 0.574976 7_2:+7502571 None:intergenic
AACATATAAGGTGTCAGGAT+AGG 0.576598 7_2:+7503161 None:intergenic
ACGGTGTCGGGTCCAATAAG+AGG 0.578637 7_2:+7503135 None:intergenic
GTGAACTTAGCTCAGTTGGT+TGG 0.579536 7_2:+7507187 None:intergenic
ATTAGATGCTCACAAACAGA+TGG 0.579685 7_2:-7505370 Msa1046880:CDS
GATCAAACTGATGGAGGTGA+TGG 0.584623 7_2:-7504265 Msa1046880:CDS
CCGATCTAAATCAATGGCAG+AGG 0.586545 7_2:-7502071 Msa1046880:three_prime_UTR
ACGTAGATCAAGGGCTTCTG+GGG 0.588870 7_2:+7503428 None:intergenic
GTGATCGATAAATGCTTGAA+GGG 0.588921 7_2:+7502556 None:intergenic
AGCCCTTGATCTACGTGGCA+AGG 0.589288 7_2:-7503421 Msa1046880:intron
AAGAGGAATCAGATCCGTAA+CGG 0.596662 7_2:+7505261 None:intergenic
CAAGAAGCAAAGGCTCCTGT+GGG 0.597921 7_2:-7503208 Msa1046880:CDS
TGCATGGTGCAATTATTGCA+GGG 0.598726 7_2:+7502112 None:intergenic
ATGATCTTTATGAGAAACAA+GGG 0.602950 7_2:-7505315 Msa1046880:CDS
ATTTATGATCAAACTGATGG+AGG 0.617182 7_2:-7504271 Msa1046880:CDS
TGGAGTTCCTGCAAAGAGGA+CGG 0.623273 7_2:-7505344 Msa1046880:CDS
ATACTGGGAACTTGTAGTGA+AGG 0.629191 7_2:-7504326 Msa1046880:CDS
TACAACTATCTCGTTCACGC+TGG 0.630000 7_2:+7507080 None:intergenic
AGGCTTGCTGAGGATACTGA+AGG 0.632568 7_2:-7504217 Msa1046880:CDS
CGGCAGAGATTATCATACCA+TGG 0.638956 7_2:+7505286 None:intergenic
GAATCTTAATATACACATTG+GGG 0.640842 7_2:+7504152 None:intergenic
AGAAACAATGCTTATACACA+TGG 0.643168 7_2:-7507331 None:intergenic
GAAATGGAGTTCCTGCAAAG+AGG 0.646124 7_2:-7505348 Msa1046880:CDS
AATAAAAGACAGCGGCTAAG+GGG 0.653569 7_2:-7502276 Msa1046880:three_prime_UTR
GAATCAGATCCGTAACGGGT+CGG 0.659162 7_2:+7505266 None:intergenic
CAACACTTGTGACTCTAGAG+AGG 0.660116 7_2:+7503511 None:intergenic
ATAGGCAGGATTCTTAACGC+TGG 0.660124 7_2:+7503179 None:intergenic
AGTATCTCCTAGGCTTGCTG+AGG 0.671909 7_2:-7504227 Msa1046880:CDS
GAGATTCTGGTAAAGAAGCG+CGG 0.678266 7_2:+7506992 None:intergenic
CCAACTGAGCTAAGTTCACG+AGG 0.681889 7_2:-7507183 Msa1046880:five_prime_UTR
CACTCGACTGACAAAGAACG+AGG 0.684880 7_2:+7503488 None:intergenic
TCTCCTGCAGTGAATCCAGG+AGG 0.685827 7_2:+7502387 None:intergenic
TTCTTAAAGAAGAAGCAGAG+AGG 0.689999 7_2:+7506905 None:intergenic
CCAGAAGCCCTTGATCTACG+TGG 0.710968 7_2:-7503426 Msa1046880:CDS
TACGGGTTAATAAAAGACAG+CGG 0.756696 7_2:-7502284 Msa1046880:three_prime_UTR
AGGCGTCACTAGCAACCCAG+CGG 0.791833 7_2:-7505221 Msa1046880:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTATTAAAATTTT+TGG - chr7_2:7503148-7503167 Msa1046880:CDS 0.0%
!!! ATTAAATACTTTTAATTTTC+AGG - chr7_2:7503101-7503120 Msa1046880:intron 10.0%
!! ACAAATTATTTAAAAATTCA+GGG + chr7_2:7506418-7506437 None:intergenic 10.0%
!! TACAAATTATTTAAAAATTC+AGG + chr7_2:7506419-7506438 None:intergenic 10.0%
!!! ATTTTTAAATAATTTGTATC+TGG - chr7_2:7506421-7506440 Msa1046880:intron 10.0%
!!! TTTTTAAATAATTTGTATCT+GGG - chr7_2:7506422-7506441 Msa1046880:intron 10.0%
!! GATTAAAAAACAATTATTTA+AGG - chr7_2:7506494-7506513 Msa1046880:intron 10.0%
!!! ATGTTTTAGTTTTAATATTA+TGG - chr7_2:7507316-7507335 Msa1046880:five_prime_UTR 10.0%
!! GCATAAAAATAAAATATGTA+AGG + chr7_2:7502064-7502083 None:intergenic 15.0%
!! TCTATATGACATTATTTAAT+TGG + chr7_2:7502717-7502736 None:intergenic 15.0%
!! ATATATATATAGTTGCATTA+TGG - chr7_2:7503024-7503043 Msa1046880:intron 15.0%
!! GTAAAAAAAAATTACACTAT+CGG - chr7_2:7503069-7503088 Msa1046880:intron 15.0%
!!! AAATTTGAAAGAAAAACTTT+TGG + chr7_2:7504403-7504422 None:intergenic 15.0%
!! TATAAAAAAAATAGAAATCG+AGG + chr7_2:7504768-7504787 None:intergenic 15.0%
!!! TCGATTTCTATTTTTTTTAT+AGG - chr7_2:7504767-7504786 Msa1046880:intron 15.0%
!!! ATTTCTATTTTTTTTATAGG+AGG - chr7_2:7504770-7504789 Msa1046880:intron 15.0%
!!! TTTCTATTTTTTTTATAGGA+GGG - chr7_2:7504771-7504790 Msa1046880:intron 15.0%
!!! AAGATCTAAAATTATACTTA+AGG + chr7_2:7504811-7504830 None:intergenic 15.0%
!!! TTATTATGTTGATTATATCA+AGG + chr7_2:7505330-7505349 None:intergenic 15.0%
!! TGATATAATCAACATAATAA+TGG - chr7_2:7505330-7505349 Msa1046880:CDS 15.0%
!! GATATAATCAACATAATAAT+GGG - chr7_2:7505331-7505350 Msa1046880:CDS 15.0%
!!! GACAATTTTTTCAAAATTTA+CGG - chr7_2:7506467-7506486 Msa1046880:intron 15.0%
!! AAAATGTTTAATTAATCTGA+AGG + chr7_2:7506579-7506598 None:intergenic 15.0%
!!! AGTAGTATACTCATTTTTTT+TGG - chr7_2:7502014-7502033 Msa1046880:three_prime_UTR 20.0%
!! AATAAAATATGTAAGGTTTG+AGG + chr7_2:7502057-7502076 None:intergenic 20.0%
!!! ACAATTTTCATTTTCAACAA+TGG - chr7_2:7502218-7502237 Msa1046880:three_prime_UTR 20.0%
!!! TTTTGATTTTTATACACTGA+CGG - chr7_2:7502599-7502618 Msa1046880:intron 20.0%
!! TAATGTCATATAGATATTTG+TGG - chr7_2:7502723-7502742 Msa1046880:intron 20.0%
!! AGAGATTAATCTCTAAATAA+TGG - chr7_2:7502838-7502857 Msa1046880:intron 20.0%
!!! CATGAAATTTGTTTTTTCAT+TGG - chr7_2:7503209-7503228 Msa1046880:CDS 20.0%
!! AGCTTAACATTAAAGTTAAA+GGG + chr7_2:7503499-7503518 None:intergenic 20.0%
!! AAGCTTAACATTAAAGTTAA+AGG + chr7_2:7503500-7503519 None:intergenic 20.0%
!! TCATATTCATTATAAACTTG+AGG + chr7_2:7503814-7503833 None:intergenic 20.0%
!!! ATTTTTGAAACATTATTCCT+AGG + chr7_2:7504188-7504207 None:intergenic 20.0%
!! AATGTTTCAAAAATCAATAC+TGG - chr7_2:7504194-7504213 Msa1046880:CDS 20.0%
!! AAACTAAATATACTTTGTGA+AGG + chr7_2:7504533-7504552 None:intergenic 20.0%
!!! AAAGTATATTTAGTTTAGCT+TGG - chr7_2:7504537-7504556 Msa1046880:intron 20.0%
!!! TTCTATTTTTTTTATAGGAG+GGG - chr7_2:7504772-7504791 Msa1046880:intron 20.0%
!! AAAATAGAACATTAAACTCA+CGG + chr7_2:7504856-7504875 None:intergenic 20.0%
!!! AATGTTCTATTTTTAATTCG+TGG - chr7_2:7504863-7504882 Msa1046880:intron 20.0%
!! ATAGATTTATGAACTATTTG+AGG - chr7_2:7506256-7506275 Msa1046880:intron 20.0%
!! AAAAAAAAAAACCAAGTTCA+GGG + chr7_2:7506356-7506375 None:intergenic 20.0%
!! TAAAAAAAAAAACCAAGTTC+AGG + chr7_2:7506357-7506376 None:intergenic 20.0%
! AACACCTTACTTATTTACTT+TGG - chr7_2:7501985-7502004 Msa1046880:three_prime_UTR 25.0%
! AACTCCAAAGTAAATAAGTA+AGG + chr7_2:7501992-7502011 None:intergenic 25.0%
!!! TATACTCATTTTTTTTGGAG+TGG - chr7_2:7502019-7502038 Msa1046880:three_prime_UTR 25.0%
! ACAGTCATTGGATATTTAAT+TGG + chr7_2:7502649-7502668 None:intergenic 25.0%
! CAATTATTGTATACAGTCAT+TGG + chr7_2:7502661-7502680 None:intergenic 25.0%
! TAAGAACTAACATGTAAAAG+TGG - chr7_2:7502756-7502775 Msa1046880:intron 25.0%
! ACTCTCTACAATTATCTATT+TGG + chr7_2:7502954-7502973 None:intergenic 25.0%
!!! ACAACTTAATTTGTAGCTTA+CGG - chr7_2:7503246-7503265 Msa1046880:CDS 25.0%
! AAAATAAAGTCAAATTGCGT+AGG - chr7_2:7503323-7503342 Msa1046880:intron 25.0%
! TTGTCAGAATAATACTTAGT+GGG - chr7_2:7503518-7503537 Msa1046880:CDS 25.0%
! TCAAATATACACCAAGTATA+TGG + chr7_2:7503689-7503708 None:intergenic 25.0%
!!! TACTTGGTGTATATTTGAAT+TGG - chr7_2:7503691-7503710 Msa1046880:intron 25.0%
! ATTCATTATAAACTTGAGGT+TGG + chr7_2:7503810-7503829 None:intergenic 25.0%
! ATGATCTTTATGAGAAACAA+GGG - chr7_2:7503961-7503980 Msa1046880:intron 25.0%
! TAACATAAATTATTACCGCT+GGG + chr7_2:7504073-7504092 None:intergenic 25.0%
! ATAACATAAATTATTACCGC+TGG + chr7_2:7504074-7504093 None:intergenic 25.0%
! GTAATAATGAAAGACTTGTA+TGG - chr7_2:7504120-7504139 Msa1046880:CDS 25.0%
!!! TTACAACTCTTAAAAGTGTT+TGG + chr7_2:7504237-7504256 None:intergenic 25.0%
! TGGTATTAGTATATGATTGA+TGG + chr7_2:7504383-7504402 None:intergenic 25.0%
! AAATAGAACATTAAACTCAC+GGG + chr7_2:7504855-7504874 None:intergenic 25.0%
! TAAAATTACATGATCATGCA+GGG - chr7_2:7504893-7504912 Msa1046880:intron 25.0%
! TCAATTTATGATCAAACTGA+TGG - chr7_2:7505002-7505021 Msa1046880:intron 25.0%
! GAATCTTAATATACACATTG+GGG + chr7_2:7505127-7505146 None:intergenic 25.0%
! GGAATCTTAATATACACATT+GGG + chr7_2:7505128-7505147 None:intergenic 25.0%
! TGGAATCTTAATATACACAT+TGG + chr7_2:7505129-7505148 None:intergenic 25.0%
! TATGTTAACATGCTATAAGT+TGG - chr7_2:7505274-7505293 Msa1046880:CDS 25.0%
! ATGTTAACATGCTATAAGTT+GGG - chr7_2:7505275-7505294 Msa1046880:CDS 25.0%
!! ATAATCAACATAATAATGGG+TGG - chr7_2:7505334-7505353 Msa1046880:CDS 25.0%
!!! TCACTTTTCCAAATTATTAC+TGG + chr7_2:7505450-7505469 None:intergenic 25.0%
! CTTCTAAATGAAGATGTATT+TGG + chr7_2:7505533-7505552 None:intergenic 25.0%
! ACAAATGTATATTTAGACTC+CGG + chr7_2:7505659-7505678 None:intergenic 25.0%
!! GTCATGACATTGAATTTTAT+AGG - chr7_2:7505957-7505976 Msa1046880:intron 25.0%
!! AAAATTTCTTTTGGTATAGC+TGG + chr7_2:7506011-7506030 None:intergenic 25.0%
!! CTATACCAAAAGAAATTTTC+TGG - chr7_2:7506012-7506031 Msa1046880:intron 25.0%
! GGATTATTGAAAAAATGTGA+TGG + chr7_2:7506170-7506189 None:intergenic 25.0%
! TTCAATAATCCATTTGCTTA+TGG - chr7_2:7506179-7506198 Msa1046880:intron 25.0%
! AAACTGAAGAAAATACTACT+TGG + chr7_2:7506226-7506245 None:intergenic 25.0%
!! CTATTTGAGGATTTTCAAAA+AGG - chr7_2:7506269-7506288 Msa1046880:intron 25.0%
!! GAACATTTTTGACAATTTCA+GGG + chr7_2:7506325-7506344 None:intergenic 25.0%
!! TGAACATTTTTGACAATTTC+AGG + chr7_2:7506326-7506345 None:intergenic 25.0%
! CTTGTTAGGAATTTGTAATT+AGG + chr7_2:7506521-7506540 None:intergenic 25.0%
! CTTGATTATGTTAACAAACT+TGG - chr7_2:7506621-7506640 Msa1046880:intron 25.0%
! ACATAAAATGACATCAGATT+TGG + chr7_2:7507300-7507319 None:intergenic 25.0%
ACCTCAAAGAAGTTACAAAA+CGG + chr7_2:7502410-7502429 None:intergenic 30.0%
!!! TTCATGCTTATTTTTGCATG+CGG - chr7_2:7502460-7502479 Msa1046880:CDS 30.0%
GATTAATTTCTATCCACTGA+CGG - chr7_2:7502887-7502906 Msa1046880:intron 30.0%
TCTATTTGGCATCATTTGAT+TGG + chr7_2:7502940-7502959 None:intergenic 30.0%
GCATTATGGAATGATTTGAT+TGG - chr7_2:7503038-7503057 Msa1046880:intron 30.0%
!!! GTTTTTTCATTGGTTCTGTT+TGG - chr7_2:7503219-7503238 Msa1046880:CDS 30.0%
TTGGCTTATTTACTGACATA+AGG + chr7_2:7503467-7503486 None:intergenic 30.0%
ATTAAAGTTAAAGGGCTGTT+TGG + chr7_2:7503491-7503510 None:intergenic 30.0%
CTTGTCAGAATAATACTTAG+TGG - chr7_2:7503517-7503536 Msa1046880:CDS 30.0%
ACAGTATAACACCATGATTT+CGG + chr7_2:7503644-7503663 None:intergenic 30.0%
ATATACACCAAGTATATGGT+TGG + chr7_2:7503685-7503704 None:intergenic 30.0%
TTGGTGTATATTTGAATTGG+TGG - chr7_2:7503694-7503713 Msa1046880:intron 30.0%
! TGTTGCTATTGTCAAAATCA+TGG - chr7_2:7503766-7503785 Msa1046880:intron 30.0%
! CCTCAATATAAATGTCGATT+AGG + chr7_2:7503852-7503871 None:intergenic 30.0%
CCTAATCGACATTTATATTG+AGG - chr7_2:7503849-7503868 Msa1046880:intron 30.0%
CATGATCTTTATGAGAAACA+AGG - chr7_2:7503960-7503979 Msa1046880:intron 30.0%
! CGAAGATATTTTTCTATCCT+AGG - chr7_2:7504168-7504187 Msa1046880:CDS 30.0%
TGTTGTCAAATTGTAGATGT+AGG + chr7_2:7504641-7504660 None:intergenic 30.0%
TCACGGGAATATAATACTTA+AGG + chr7_2:7504839-7504858 None:intergenic 30.0%
!!! TCTATTTTTAATTCGTGGTG+TGG - chr7_2:7504868-7504887 Msa1046880:intron 30.0%
CTAAAATTACATGATCATGC+AGG - chr7_2:7504892-7504911 Msa1046880:intron 30.0%
ATTTATGATCAAACTGATGG+AGG - chr7_2:7505005-7505024 Msa1046880:intron 30.0%
CGATAACTTCCTTAATTGAA+GGG + chr7_2:7505169-7505188 None:intergenic 30.0%
! TGTTGATTATATCAAGGACA+AGG + chr7_2:7505324-7505343 None:intergenic 30.0%
TGTTGACACCAGTAATAATT+TGG - chr7_2:7505439-7505458 Msa1046880:intron 30.0%
GGAGTCTAAATATACATTTG+TGG - chr7_2:7505658-7505677 Msa1046880:intron 30.0%
TACAGCTTCATATCTTTCAA+GGG + chr7_2:7505701-7505720 None:intergenic 30.0%
TTACAGCTTCATATCTTTCA+AGG + chr7_2:7505702-7505721 None:intergenic 30.0%
GCAATAAAGAAAAGAGTAAG+CGG + chr7_2:7505884-7505903 None:intergenic 30.0%
! TTATTGCCAATTTTTGCGTT+TGG - chr7_2:7505897-7505916 Msa1046880:intron 30.0%
TCAAATCCAAACGCAAAAAT+TGG + chr7_2:7505906-7505925 None:intergenic 30.0%
AATAAGAGGAGCAACATATA+AGG + chr7_2:7506130-7506149 None:intergenic 30.0%
TTATATGTTGCTCCTCTTAT+TGG - chr7_2:7506129-7506148 Msa1046880:intron 30.0%
TGAAAAAATGTGATGGCTTA+CGG + chr7_2:7506163-7506182 None:intergenic 30.0%
CCATAATAACCATAAGCAAA+TGG + chr7_2:7506191-7506210 None:intergenic 30.0%
CCATTTGCTTATGGTTATTA+TGG - chr7_2:7506188-7506207 Msa1046880:intron 30.0%
TACAAATTCCTAACAAGTTC+AGG - chr7_2:7506524-7506543 Msa1046880:intron 30.0%
ACAAATTCCTAACAAGTTCA+GGG - chr7_2:7506525-7506544 Msa1046880:intron 30.0%
! ATTAAATCCCTGAACTTGTT+AGG + chr7_2:7506535-7506554 None:intergenic 30.0%
TCTTTAATGAACATCTCGTT+AGG - chr7_2:7506598-7506617 Msa1046880:intron 30.0%
GTAATGTTAGTTCAGGTATT+AGG + chr7_2:7506659-7506678 None:intergenic 30.0%
CACAGATGATTTATCATTCT+AGG + chr7_2:7507046-7507065 None:intergenic 30.0%
! CATTGTTAGTCTGAAATTCT+TGG - chr7_2:7507075-7507094 Msa1046880:five_prime_UTR 30.0%
!!! TACTTTGTATGCTGGTTTTT+AGG - chr7_2:7507131-7507150 Msa1046880:five_prime_UTR 30.0%
!!! ACTTTGTATGCTGGTTTTTA+GGG - chr7_2:7507132-7507151 Msa1046880:five_prime_UTR 30.0%
! AGTCGAGATTTAAAATTGCA+TGG + chr7_2:7507183-7507202 None:intergenic 30.0%
! GTAAATAAGTAAGGTGTTCG+AGG + chr7_2:7501983-7502002 None:intergenic 35.0%
AACAATGGCTTCTTCACTTT+CGG - chr7_2:7502233-7502252 Msa1046880:three_prime_UTR 35.0%
TTCTTAAAGAAGAAGCAGAG+AGG + chr7_2:7502374-7502393 None:intergenic 35.0%
! ACCGTTTTGTAACTTCTTTG+AGG - chr7_2:7502406-7502425 Msa1046880:CDS 35.0%
!!! CGATGTGTTTTGTTGTTGTA+AGG - chr7_2:7502562-7502581 Msa1046880:CDS 35.0%
! GTTGTAAGGATGTGTTTTGT+TGG - chr7_2:7502576-7502595 Msa1046880:CDS 35.0%
GAAAATATTTACACCGTCAG+TGG + chr7_2:7502903-7502922 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTAAGT+TGG - chr7_2:7503351-7503370 Msa1046880:intron 35.0%
TCAGAATAATACTTAGTGGG+TGG - chr7_2:7503521-7503540 Msa1046880:CDS 35.0%
TGGTGAGTTATGCAAAATCA+CGG - chr7_2:7503714-7503733 Msa1046880:intron 35.0%
GTCGATTAGGAAACAAAACA+AGG + chr7_2:7503839-7503858 None:intergenic 35.0%
ATTAGATGCTCACAAACAGA+TGG - chr7_2:7503906-7503925 Msa1046880:intron 35.0%
CTGATTCCTCTTATTGAAAG+TGG - chr7_2:7504026-7504045 Msa1046880:intron 35.0%
CTAACACCACTTTCAATAAG+AGG + chr7_2:7504035-7504054 None:intergenic 35.0%
! CTTATTGAAAGTGGTGTTAG+AGG - chr7_2:7504035-7504054 Msa1046880:intron 35.0%
ATATCTTCGCACAAGTAGAA+CGG + chr7_2:7504157-7504176 None:intergenic 35.0%
GTGCTTACAATGATCAATTC+AGG - chr7_2:7504355-7504374 Msa1046880:CDS 35.0%
CAATAAAGTAGAGTAAACCG+TGG - chr7_2:7504429-7504448 Msa1046880:intron 35.0%
GAGTAATACAACGATTATGC+AGG + chr7_2:7504495-7504514 None:intergenic 35.0%
TAGCTTGGTAAACTACACAA+AGG - chr7_2:7504552-7504571 Msa1046880:intron 35.0%
! TTTCTGTTGAAGTATCTCCT+AGG - chr7_2:7505039-7505058 Msa1046880:intron 35.0%
TGCAAAATGGCTTCATAAAG+TGG - chr7_2:7505094-7505113 Msa1046880:intron 35.0%
GCGATAACTTCCTTAATTGA+AGG + chr7_2:7505170-7505189 None:intergenic 35.0%
ATTAAGGAAGTTATCGCCAA+TGG - chr7_2:7505173-7505192 Msa1046880:intron 35.0%
GTTATGCTAGTTAGAAGTGA+GGG - chr7_2:7505364-7505383 Msa1046880:CDS 35.0%
TTGAATGTAACCTCATGTGT+TGG - chr7_2:7505470-7505489 Msa1046880:intron 35.0%
! ATTTGGTGAATGACATGTGT+CGG + chr7_2:7505516-7505535 None:intergenic 35.0%
!! GATTACTTTTACCATGTTGC+CGG - chr7_2:7505637-7505656 Msa1046880:intron 35.0%
AGCTGTAATTGATGCTTACT+TGG - chr7_2:7505714-7505733 Msa1046880:intron 35.0%
GTAATTGATGCTTACTTGGA+CGG - chr7_2:7505718-7505737 Msa1046880:intron 35.0%
GACAAGATGCTTGAGAAAAT+TGG - chr7_2:7505823-7505842 Msa1046880:intron 35.0%
! TTGGGCCAGAAAATTTCTTT+TGG + chr7_2:7506020-7506039 None:intergenic 35.0%
!! AAAAGAAATTTTCTGGCCCA+AGG - chr7_2:7506019-7506038 Msa1046880:intron 35.0%
! TGGGAAGCTCTAGTTAAAAA+AGG - chr7_2:7506042-7506061 Msa1046880:intron 35.0%
! GGGAAGCTCTAGTTAAAAAA+GGG - chr7_2:7506043-7506062 Msa1046880:intron 35.0%
! GGAAGCTCTAGTTAAAAAAG+GGG - chr7_2:7506044-7506063 Msa1046880:intron 35.0%
! AACATATAAGGTGTCAGGAT+AGG + chr7_2:7506118-7506137 None:intergenic 35.0%
TTCATTTAGATCCCTGAACT+TGG - chr7_2:7506342-7506361 Msa1046880:intron 35.0%
TGAGAAGGTAATGTTAGTTC+AGG + chr7_2:7506666-7506685 None:intergenic 35.0%
GTGATCGATAAATGCTTGAA+GGG + chr7_2:7506723-7506742 None:intergenic 35.0%
CTTCAAGCATTTATCGATCA+CGG - chr7_2:7506722-7506741 Msa1046880:intron 35.0%
ATACAATGCTATCCAGAAGT+TGG - chr7_2:7506793-7506812 Msa1046880:intron 35.0%
TACAATGCTATCCAGAAGTT+GGG - chr7_2:7506794-7506813 Msa1046880:intron 35.0%
! TACGGGTTAATAAAAGACAG+CGG - chr7_2:7506992-7507011 Msa1046880:CDS 35.0%
TTAATAAAAGACAGCGGCTA+AGG - chr7_2:7506998-7507017 Msa1046880:CDS 35.0%
TAATAAAAGACAGCGGCTAA+GGG - chr7_2:7506999-7507018 Msa1046880:CDS 35.0%
TTTCCATGTACTTTGTATGC+TGG - chr7_2:7507123-7507142 Msa1046880:five_prime_UTR 35.0%
AAACCAGCATACAAAGTACA+TGG + chr7_2:7507129-7507148 None:intergenic 35.0%
! AGCTAAGAAGCTCGTTTTGA+TGG + chr7_2:7502322-7502341 None:intergenic 40.0%
AGTTAAAGGGCTGTTTGGAT+TGG + chr7_2:7503486-7503505 None:intergenic 40.0%
GCTATTACAAACCGACTGTA+AGG + chr7_2:7503553-7503572 None:intergenic 40.0%
!! ACAGTCGGTTTGTAATAGCA+CGG - chr7_2:7503554-7503573 Msa1046880:CDS 40.0%
ACGGTGTTTGACAAAGTTAC+AGG - chr7_2:7503573-7503592 Msa1046880:CDS 40.0%
CGGTGTTTGACAAAGTTACA+GGG - chr7_2:7503574-7503593 Msa1046880:CDS 40.0%
GGTGTTTGACAAAGTTACAG+GGG - chr7_2:7503575-7503594 Msa1046880:CDS 40.0%
TTTCGGCAAAAGCTGCAATT+TGG + chr7_2:7503627-7503646 None:intergenic 40.0%
! CAAGTATATGGTTGGATTGG+TGG + chr7_2:7503677-7503696 None:intergenic 40.0%
CACCAATCCAACCATATACT+TGG - chr7_2:7503675-7503694 Msa1046880:intron 40.0%
CACCAAGTATATGGTTGGAT+TGG + chr7_2:7503680-7503699 None:intergenic 40.0%
TGAGTTATGCAAAATCACGG+TGG - chr7_2:7503717-7503736 Msa1046880:intron 40.0%
TGAGGCAAACATTTGACTGT+TGG - chr7_2:7503867-7503886 Msa1046880:intron 40.0%
GCAAACATTTGACTGTTGGT+TGG - chr7_2:7503871-7503890 Msa1046880:intron 40.0%
TGCTCACAAACAGATGGAAA+TGG - chr7_2:7503912-7503931 Msa1046880:intron 40.0%
AAGAGGAATCAGATCCGTAA+CGG + chr7_2:7504018-7504037 None:intergenic 40.0%
CTGCAATCATGTGGTATAGA+CGG + chr7_2:7504307-7504326 None:intergenic 40.0%
CTGAAAGATCTGCAATCATG+TGG + chr7_2:7504316-7504335 None:intergenic 40.0%
TAAAGTAGAGTAAACCGTGG+AGG - chr7_2:7504432-7504451 Msa1046880:intron 40.0%
AAGGTCAATGTTGTCAATCC+CGG - chr7_2:7504571-7504590 Msa1046880:intron 40.0%
AATCGCAATTCTCTGTGATC+CGG + chr7_2:7504593-7504612 None:intergenic 40.0%
GTGTACTAAATCGTGTATCG+CGG - chr7_2:7504663-7504682 Msa1046880:intron 40.0%
GCATAGAGAGTTTGGAGAAA+CGG + chr7_2:7504697-7504716 None:intergenic 40.0%
TCTCCAAACTCTCTATGCTA+TGG - chr7_2:7504699-7504718 Msa1046880:intron 40.0%
AAGACATTGACAGTGCATAC+TGG - chr7_2:7504934-7504953 Msa1046880:CDS 40.0%
AGACATTGACAGTGCATACT+GGG - chr7_2:7504935-7504954 Msa1046880:CDS 40.0%
ATACTGGGAACTTGTAGTGA+AGG - chr7_2:7504950-7504969 Msa1046880:CDS 40.0%
GAACCATAGAAGCTGCAAAA+TGG - chr7_2:7505081-7505100 Msa1046880:intron 40.0%
!! AAGCCATTTTGCAGCTTCTA+TGG + chr7_2:7505087-7505106 None:intergenic 40.0%
TGCATGTGTCCCTTCAATTA+AGG - chr7_2:7505157-7505176 Msa1046880:intron 40.0%
CACGTTCACACTTATTCCAT+TGG + chr7_2:7505192-7505211 None:intergenic 40.0%
!! CATAATAATGGGTGGTAGCA+AGG - chr7_2:7505342-7505361 Msa1046880:CDS 40.0%
GGTTATGCTAGTTAGAAGTG+AGG - chr7_2:7505363-7505382 Msa1046880:CDS 40.0%
GTCAATATCAGTGATGTGTC+TGG + chr7_2:7505418-7505437 None:intergenic 40.0%
ATATTTAGACTCCGGCAACA+TGG + chr7_2:7505651-7505670 None:intergenic 40.0%
TATCTGGGTCCTTAAAGTCA+GGG - chr7_2:7506437-7506456 Msa1046880:intron 40.0%
TCATCAAGTCCCTGACTTTA+AGG + chr7_2:7506449-7506468 None:intergenic 40.0%
TACCTTCTCATTTACTTCCC+AGG - chr7_2:7506676-7506695 Msa1046880:intron 40.0%
TACCTGGGAAGTAAATGAGA+AGG + chr7_2:7506681-7506700 None:intergenic 40.0%
CGTGATCGATAAATGCTTGA+AGG + chr7_2:7506724-7506743 None:intergenic 40.0%
TGCATTTGAGTCTATTGTCC+TGG + chr7_2:7506756-7506775 None:intergenic 40.0%
! TCAAATGCATCTGAAGCTGA+AGG - chr7_2:7506767-7506786 Msa1046880:intron 40.0%
!! TCCAGAAGTTGGGTATTGAT+TGG - chr7_2:7506804-7506823 Msa1046880:intron 40.0%
TCCAATCAATACCCAACTTC+TGG + chr7_2:7506808-7506827 None:intergenic 40.0%
!! GGTATTGATTGGAGCTATGT+TGG - chr7_2:7506815-7506834 Msa1046880:intron 40.0%
!! TGTTGGTTCACAGCTTGAAT+TGG - chr7_2:7506832-7506851 Msa1046880:intron 40.0%
GAAGGCAAAATCTCTTAAGC+TGG - chr7_2:7506910-7506929 Msa1046880:CDS 40.0%
CAAGTGAGGTGTGAACTTTA+TGG - chr7_2:7506937-7506956 Msa1046880:CDS 40.0%
! GTCTTTTATTAACCCGTACG+CGG + chr7_2:7506990-7507009 None:intergenic 40.0%
AATAAAAGACAGCGGCTAAG+GGG - chr7_2:7507000-7507019 Msa1046880:CDS 40.0%
TGCATGGTGCAATTATTGCA+GGG + chr7_2:7507167-7507186 None:intergenic 40.0%
TTGCATGGTGCAATTATTGC+AGG + chr7_2:7507168-7507187 None:intergenic 40.0%
GACTGTCCGATCTAAATCAA+TGG - chr7_2:7507199-7507218 Msa1046880:five_prime_UTR 40.0%
!! CCTCTGCCATTGATTTAGAT+CGG + chr7_2:7507208-7507227 None:intergenic 40.0%
GTGAACTTAGCTCAGTTGGT+TGG + chr7_2:7502092-7502111 None:intergenic 45.0%
TACAACTATCTCGTTCACGC+TGG + chr7_2:7502199-7502218 None:intergenic 45.0%
! AAAGAAGCGCGGTTTGTGTT+TGG + chr7_2:7502276-7502295 None:intergenic 45.0%
GAGATTCTGGTAAAGAAGCG+CGG + chr7_2:7502287-7502306 None:intergenic 45.0%
GATCTGGATCGAAGAGATTC+TGG + chr7_2:7502300-7502319 None:intergenic 45.0%
!! GAAGCTCGTTTTGATGGATC+TGG + chr7_2:7502316-7502335 None:intergenic 45.0%
TTTGTAGCTTACGGCGTAAG+TGG - chr7_2:7503255-7503274 Msa1046880:CDS 45.0%
GGTGGTATTTGCCTTACAGT+CGG - chr7_2:7503539-7503558 Msa1046880:CDS 45.0%
! TGCAGCTTTTGCCGAAATCA+TGG - chr7_2:7503630-7503649 Msa1046880:intron 45.0%
ACTTGAGGTTGGCAGAATCA+TGG + chr7_2:7503799-7503818 None:intergenic 45.0%
TGTGAGCATCTAATCCTGCA+AGG + chr7_2:7503900-7503919 None:intergenic 45.0%
GAAATGGAGTTCCTGCAAAG+AGG - chr7_2:7503928-7503947 Msa1046880:intron 45.0%
CGGCAGAGATTATCATACCA+TGG + chr7_2:7503993-7504012 None:intergenic 45.0%
AGAGGAATCAGATCCGTAAC+GGG + chr7_2:7504017-7504036 None:intergenic 45.0%
ATCGCAATTCTCTGTGATCC+GGG + chr7_2:7504592-7504611 None:intergenic 45.0%
GATCAAACTGATGGAGGTGA+TGG - chr7_2:7505011-7505030 Msa1046880:intron 45.0%
! CAACACTTGTGACTCTAGAG+AGG + chr7_2:7505768-7505787 None:intergenic 45.0%
TACCTTGCCACGTAGATCAA+GGG + chr7_2:7505860-7505879 None:intergenic 45.0%
TTACCTTGCCACGTAGATCA+AGG + chr7_2:7505861-7505880 None:intergenic 45.0%
!! AGAAATTTTCTGGCCCAAGG+TGG - chr7_2:7506022-7506041 Msa1046880:intron 45.0%
!! GAAATTTTCTGGCCCAAGGT+GGG - chr7_2:7506023-7506042 Msa1046880:intron 45.0%
TAACTAGAGCTTCCCACCTT+GGG + chr7_2:7506038-7506057 None:intergenic 45.0%
TTAACTAGAGCTTCCCACCT+TGG + chr7_2:7506039-7506058 None:intergenic 45.0%
AAAAAGGGGCCAAGAAGCAA+AGG - chr7_2:7506058-7506077 Msa1046880:intron 45.0%
ATAGGCAGGATTCTTAACGC+TGG + chr7_2:7506100-7506119 None:intergenic 45.0%
! TATAAGGTGTCAGGATAGGC+AGG + chr7_2:7506114-7506133 None:intergenic 45.0%
! GGAGCAACATATAAGGTGTC+AGG + chr7_2:7506123-7506142 None:intergenic 45.0%
AATGTGATGGCTTACGGTGT+CGG + chr7_2:7506157-7506176 None:intergenic 45.0%
GTATCTGGGTCCTTAAAGTC+AGG - chr7_2:7506436-7506455 Msa1046880:intron 45.0%
CGATAAATGCTTGAAGGGCT+TGG + chr7_2:7506718-7506737 None:intergenic 45.0%
GGTTCACAGCTTGAATTGGA+AGG - chr7_2:7506836-7506855 Msa1046880:intron 45.0%
GTAATGTATGATGCCGCGTA+CGG - chr7_2:7506974-7506993 Msa1046880:CDS 45.0%
TAATGTATGATGCCGCGTAC+GGG - chr7_2:7506975-7506994 Msa1046880:CDS 45.0%
CCGATCTAAATCAATGGCAG+AGG - chr7_2:7507205-7507224 Msa1046880:five_prime_UTR 45.0%
!!! TTAAATAATTGTTTTTTAAT+CGG + chr7_2:7506495-7506514 None:intergenic 5.0%
!! ATTAAAAAACAATTATTTAA+GGG - chr7_2:7506495-7506514 Msa1046880:intron 5.0%
CCTCGTGAACTTAGCTCAGT+TGG + chr7_2:7502096-7502115 None:intergenic 50.0%
CCAACTGAGCTAAGTTCACG+AGG - chr7_2:7502093-7502112 Msa1046880:three_prime_UTR 50.0%
TGGAGTTCCTGCAAAGAGGA+CGG - chr7_2:7503932-7503951 Msa1046880:intron 50.0%
TGAAGAACCGTCCTCTTTGC+AGG + chr7_2:7503942-7503961 None:intergenic 50.0%
AGAAACAAGGGCAGAGTCCA+TGG - chr7_2:7503973-7503992 Msa1046880:intron 50.0%
TAATCTCTGCCGACCCGTTA+CGG - chr7_2:7504001-7504020 Msa1046880:intron 50.0%
!! GAATCAGATCCGTAACGGGT+CGG + chr7_2:7504013-7504032 None:intergenic 50.0%
GAGACATGTCTATGCCTCCA+CGG + chr7_2:7504449-7504468 None:intergenic 50.0%
GCGCCATAGCATAGAGAGTT+TGG + chr7_2:7504705-7504724 None:intergenic 50.0%
TGGCGCGATAGAGATGCTAT+TGG - chr7_2:7504719-7504738 Msa1046880:intron 50.0%
!! AGTATCTCCTAGGCTTGCTG+AGG - chr7_2:7505049-7505068 Msa1046880:intron 50.0%
TCAGTATCCTCAGCAAGCCT+AGG + chr7_2:7505059-7505078 None:intergenic 50.0%
!! AGGCTTGCTGAGGATACTGA+AGG - chr7_2:7505059-7505078 Msa1046880:intron 50.0%
TGATGCTTACTTGGACGGTC+TGG - chr7_2:7505723-7505742 Msa1046880:intron 50.0%
CACTCGACTGACAAAGAACG+AGG + chr7_2:7505791-7505810 None:intergenic 50.0%
CTCGTTCTTTGTCAGTCGAG+TGG - chr7_2:7505789-7505808 Msa1046880:intron 50.0%
ACGTAGATCAAGGGCTTCTG+GGG + chr7_2:7505851-7505870 None:intergenic 50.0%
CACGTAGATCAAGGGCTTCT+GGG + chr7_2:7505852-7505871 None:intergenic 50.0%
CAAGAAGCAAAGGCTCCTGT+GGG - chr7_2:7506068-7506087 Msa1046880:intron 50.0%
ATGTGATGGCTTACGGTGTC+GGG + chr7_2:7506156-7506175 None:intergenic 50.0%
GTCTGGCATGGTAGATACCT+GGG + chr7_2:7506696-7506715 None:intergenic 50.0%
! AATGCTTGAAGGGCTTGGTC+TGG + chr7_2:7506713-7506732 None:intergenic 50.0%
TGAATCCAGGAGGCTGTCAA+AGG + chr7_2:7506882-7506901 None:intergenic 50.0%
CTTAAGCTGGTCAGCAAGTG+AGG - chr7_2:7506923-7506942 Msa1046880:CDS 50.0%
! CTGTTGGTTGGTGTCCTTGC+AGG - chr7_2:7503883-7503902 Msa1046880:intron 55.0%
TGCAGGGAACTTGTGCAAGC+AGG - chr7_2:7504909-7504928 Msa1046880:intron 55.0%
GCAGGGAACTTGTGCAAGCA+GGG - chr7_2:7504910-7504929 Msa1046880:intron 55.0%
CGAAGCGACACCAACACATG+AGG + chr7_2:7505483-7505502 None:intergenic 55.0%
TGCTTACTTGGACGGTCTGG+AGG - chr7_2:7505726-7505745 Msa1046880:intron 55.0%
CCACGTAGATCAAGGGCTTC+TGG + chr7_2:7505853-7505872 None:intergenic 55.0%
CCAGAAGCCCTTGATCTACG+TGG - chr7_2:7505850-7505869 Msa1046880:intron 55.0%
AGCCCTTGATCTACGTGGCA+AGG - chr7_2:7505855-7505874 Msa1046880:intron 55.0%
!! CTGGTAAGCCAGTGCTGCTT+GGG + chr7_2:7505992-7506011 None:intergenic 55.0%
CCACAGGAGCCTTTGCTTCT+TGG + chr7_2:7506070-7506089 None:intergenic 55.0%
CCAAGAAGCAAAGGCTCCTG+TGG - chr7_2:7506067-7506086 Msa1046880:intron 55.0%
! TAACGCTGGTTGAAGCCCAC+AGG + chr7_2:7506086-7506105 None:intergenic 55.0%
! ACGGTGTCGGGTCCAATAAG+AGG + chr7_2:7506144-7506163 None:intergenic 55.0%
GGTCTGGCATGGTAGATACC+TGG + chr7_2:7506697-7506716 None:intergenic 55.0%
! TTGAAGGGCTTGGTCTGGCA+TGG + chr7_2:7506708-7506727 None:intergenic 55.0%
GAAAGCCTTTGACAGCCTCC+TGG - chr7_2:7506874-7506893 Msa1046880:CDS 55.0%
TCTCCTGCAGTGAATCCAGG+AGG + chr7_2:7506892-7506911 None:intergenic 55.0%
CCTTCTCCTGCAGTGAATCC+AGG + chr7_2:7506895-7506914 None:intergenic 55.0%
CCTGGATTCACTGCAGGAGA+AGG - chr7_2:7506892-7506911 Msa1046880:CDS 55.0%
AGGCGTCACTAGCAACCCAG+CGG - chr7_2:7504055-7504074 Msa1046880:intron 60.0%
GGGACACATGCAGCTGTAGC+TGG + chr7_2:7505149-7505168 None:intergenic 60.0%
!! TTGGACGGTCTGGAGGCATC+TGG - chr7_2:7505733-7505752 Msa1046880:intron 60.0%
!! TGGACGGTCTGGAGGCATCT+GGG - chr7_2:7505734-7505753 Msa1046880:intron 60.0%
AGCAGTAGCCCAAGCAGCAC+TGG - chr7_2:7505981-7506000 Msa1046880:intron 60.0%
! GCTGGTAAGCCAGTGCTGCT+TGG + chr7_2:7505993-7506012 None:intergenic 60.0%
!! TCGATCACGGTGCTGTAGCC+AGG - chr7_2:7506735-7506754 Msa1046880:intron 60.0%
CAGCCTCCTGGATTCACTGC+AGG - chr7_2:7506886-7506905 Msa1046880:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 7501957 7507341 7501957 ID=Msa1046880;Name=Msa1046880
chr7_2 mRNA 7501957 7507341 7501957 ID=Msa1046880-mRNA-1;Parent=Msa1046880;Name=Msa1046880-mRNA-1;_AED=0.03;_eAED=0.03;_QI=280|1|1|1|1|1|7|398|443
chr7_2 exon 7501957 7502600 7501957 ID=Msa1046880-mRNA-1:exon:1901;Parent=Msa1046880-mRNA-1
chr7_2 exon 7503137 7503319 7503137 ID=Msa1046880-mRNA-1:exon:1900;Parent=Msa1046880-mRNA-1
chr7_2 exon 7503422 7503610 7503422 ID=Msa1046880-mRNA-1:exon:1899;Parent=Msa1046880-mRNA-1
chr7_2 exon 7504084 7504384 7504084 ID=Msa1046880-mRNA-1:exon:1898;Parent=Msa1046880-mRNA-1
chr7_2 exon 7504922 7504971 7504922 ID=Msa1046880-mRNA-1:exon:1897;Parent=Msa1046880-mRNA-1
chr7_2 exon 7505222 7505393 7505222 ID=Msa1046880-mRNA-1:exon:1896;Parent=Msa1046880-mRNA-1
chr7_2 exon 7506871 7507341 7506871 ID=Msa1046880-mRNA-1:exon:1895;Parent=Msa1046880-mRNA-1
chr7_2 five_prime_UTR 7507062 7507341 7507062 ID=Msa1046880-mRNA-1:five_prime_utr;Parent=Msa1046880-mRNA-1
chr7_2 CDS 7506871 7507061 7506871 ID=Msa1046880-mRNA-1:cds;Parent=Msa1046880-mRNA-1
chr7_2 CDS 7505222 7505393 7505222 ID=Msa1046880-mRNA-1:cds;Parent=Msa1046880-mRNA-1
chr7_2 CDS 7504922 7504971 7504922 ID=Msa1046880-mRNA-1:cds;Parent=Msa1046880-mRNA-1
chr7_2 CDS 7504084 7504384 7504084 ID=Msa1046880-mRNA-1:cds;Parent=Msa1046880-mRNA-1
chr7_2 CDS 7503422 7503610 7503422 ID=Msa1046880-mRNA-1:cds;Parent=Msa1046880-mRNA-1
chr7_2 CDS 7503137 7503319 7503137 ID=Msa1046880-mRNA-1:cds;Parent=Msa1046880-mRNA-1
chr7_2 CDS 7502355 7502600 7502355 ID=Msa1046880-mRNA-1:cds;Parent=Msa1046880-mRNA-1
chr7_2 three_prime_UTR 7501957 7502354 7501957 ID=Msa1046880-mRNA-1:three_prime_utr;Parent=Msa1046880-mRNA-1
Gene Sequence

>Msa1046880

ATGGCTTCTTCACTTTCGGTTTCGAAGATCACAACACCAAACACAAACCGCGCTTCTTTACCAGAATCTCTTCGATCCAGATCCATCAAAACGAGCTTCTTAGCTTTCAACAATACAAATGATTTCAAAACTAACCTCTCTGCTTCTTCTTTAAGAACAACTCGTGAAAACCGTTTTGTAACTTCTTTGAGGATTAGATGCTCACAAACAGATGGAAATGGAGTTCCTGCAAAGAGGACGGTTCTTCATGATCTTTATGAGAAACAAGGGCAGAGTCCATGGTATGATAATCTCTGCCGACCCGTTACGGATCTGATTCCTCTTATTGAAAGTGGTGTTAGAGGCGTCACTAGCAACCCAGCGATCTTTCAGAAAGCTATTTCATCTTCAAGTGCTTACAATGATCAATTCAGGGAACTTGTGCAAGCAGGGAAAGACATTGACAGTGCATACTGGGAACTTGTAGTGAAGGACATTCAAGATGCTTGCAAACTATTTGAATCAATTTATGATCAAACTGATGGAGGTGATGGCTATGTTTCTGTTGAAGTATCTCCTAGGCTTGCTGAGGATACTGAAGGAACCATAGAAGCTGCAAAATGGCTTCATAAAGTGGTTTCTCGCCCCAATGTGTATATTAAGATTCCAGCTACAGCTGCATGTGTCCCTTCAATTAAGGAAGTTATCGCCAATGGAATAAGTGTGAACGTGACTCTGATATTCTCCCTTGAAAGATATGAAGCTGTAATTGATGCTTACTTGGACGGTCTGGAGGCATCTGGGTTAAATGACCTCTCTAGAGTCACAAGTGTTGCCTCGTTCTTTGTCAGTCGAGTGGACACTCTCATTGACAAGATGCTTGAGAAAATTGGCACCCCAGAAGCCCTTGATCTACGTGGCAAGGCAGCAGTAGCCCAAGCAGCACTGGCTTACCAGCTATACCAAAAGAAATTTTCTGGCCCAAGGTGGGAAGCTCTAGTTAAAAAAGGGGCCAAGAAGCAAAGGCTCCTGTGGGCTTCAACCAGCGTTAAGAATCCTGCCTATCCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACCGTATCTACCATGCCAGACCAAGCCCTTCAAGCATTTATCGATCACGGTGCTGTAGCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACAATGCTATCCAGAAGTTGGGTATTGATTGGAGCTATGTTGGTTCACAGCTTGAATTGGAAGGAGTTGATTCATTCAAGAAAGCCTTTGACAGCCTCCTGGATTCACTGCAGGAGAAGGCAAAATCTCTTAAGCTGGTCAGCAAGTGA

Protein sequence

>Msa1046880

MASSLSVSKITTPNTNRASLPESLRSRSIKTSFLAFNNTNDFKTNLSASSLRTTRENRFVTSLRIRCSQTDGNGVPAKRTVLHDLYEKQGQSPWYDNLCRPVTDLIPLIESGVRGVTSNPAIFQKAISSSSAYNDQFRELVQAGKDIDSAYWELVVKDIQDACKLFESIYDQTDGGDGYVSVEVSPRLAEDTEGTIEAAKWLHKVVSRPNVYIKIPATAACVPSIKEVIANGISVNVTLIFSLERYEAVIDAYLDGLEASGLNDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFIDHGAVARTIDSNASEAEGIYNAIQKLGIDWSYVGSQLELEGVDSFKKAFDSLLDSLQEKAKSLKLVSK*