AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1087420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087420 MtrunA17_Chr7g0214741 98.646 443 6 0 1 443 1 443 0.0 892
Msa1087420 MtrunA17_Chr8g0385641 69.149 376 115 1 62 436 34 409 0.0 546
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087420 AT5G13420.1 79.657 408 83 0 35 442 30 437 0.0 658

Find 136 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACAGGAGCCTTTGCTTCT+TGG 0.121680 7_3:-174389 None:intergenic
TTATATGTTGCTCCTCTTAT+TGG 0.160550 7_3:+174451 Msa1087420:CDS
CCACGTAGATCAAGGGCTTC+TGG 0.196646 7_3:-174172 None:intergenic
CATTGTTAGTCTGAAATTCT+TGG 0.237216 7_3:+175397 Msa1087420:three_prime_UTR
GACAAGATGCTTGAGAAAAT+TGG 0.255255 7_3:+174145 Msa1087420:CDS
AACAATGGCTTCTTCACTTT+CGG 0.265437 7_3:+170559 Msa1087420:exon
CACAGATGATTTATCATTCT+AGG 0.278158 7_3:-175365 None:intergenic
TTGGACGGTCTGGAGGCATC+TGG 0.296116 7_3:+174055 Msa1087420:CDS
AGCAGTAGCCCAAGCAGCAC+TGG 0.319222 7_3:+174303 Msa1087420:CDS
ACATAAAATGACATCAGATT+TGG 0.322012 7_3:-175619 None:intergenic
TGCATGTGTCCCTTCAATTA+AGG 0.343064 7_3:+173479 Msa1087420:CDS
CTTATTGAAAGTGGTGTTAG+AGG 0.347970 7_3:+172357 Msa1087420:CDS
GATCTGGATCGAAGAGATTC+TGG 0.349569 7_3:-170623 None:intergenic
TCCAATCAATACCCAACTTC+TGG 0.350106 7_3:-175127 None:intergenic
TGAAGAACCGTCCTCTTTGC+AGG 0.353042 7_3:-172261 None:intergenic
CACGTAGATCAAGGGCTTCT+GGG 0.353425 7_3:-174171 None:intergenic
CAAGTGAGGTGTGAACTTTA+TGG 0.357425 7_3:+175259 Msa1087420:exon
TTGGGCCAGAAAATTTCTTT+TGG 0.367465 7_3:-174339 None:intergenic
GTGCTTACAATGATCAATTC+AGG 0.381631 7_3:+172677 Msa1087420:CDS
TTGCATGGTGCAATTATTGC+AGG 0.385691 7_3:-175487 None:intergenic
TTACAGCTTCATATCTTTCA+AGG 0.387825 7_3:-174021 None:intergenic
CCTTCTCCTGCAGTGAATCC+AGG 0.391080 7_3:-175214 None:intergenic
CGATAAATGCTTGAAGGGCT+TGG 0.394216 7_3:-175037 None:intergenic
AACACCTTACTTATTTACTT+TGG 0.395720 7_3:+170311 Msa1087420:five_prime_UTR
TTTCCATGTACTTTGTATGC+TGG 0.396835 7_3:+175445 Msa1087420:three_prime_UTR
TCCAGAAGTTGGGTATTGAT+TGG 0.397913 7_3:+175126 Msa1087420:CDS
AAGACATTGACAGTGCATAC+TGG 0.398567 7_3:+173256 Msa1087420:CDS
TGTTGGTTCACAGCTTGAAT+TGG 0.398912 7_3:+175154 Msa1087420:CDS
CTGGTAAGCCAGTGCTGCTT+GGG 0.405777 7_3:-174311 None:intergenic
GGAATCTTAATATACACATT+GGG 0.407298 7_3:-173447 None:intergenic
GAACCATAGAAGCTGCAAAA+TGG 0.407939 7_3:+173403 Msa1087420:CDS
TAATCTCTGCCGACCCGTTA+CGG 0.408310 7_3:+172323 Msa1087420:CDS
TGATGCTTACTTGGACGGTC+TGG 0.408914 7_3:+174045 Msa1087420:CDS
GCTGGTAAGCCAGTGCTGCT+TGG 0.416878 7_3:-174312 None:intergenic
CTAACACCACTTTCAATAAG+AGG 0.417790 7_3:-172354 None:intergenic
AGCTGTAATTGATGCTTACT+TGG 0.425218 7_3:+174036 Msa1087420:CDS
GCGATAACTTCCTTAATTGA+AGG 0.430140 7_3:-173489 None:intergenic
TAACTAGAGCTTCCCACCTT+GGG 0.431657 7_3:-174357 None:intergenic
TGCAAAATGGCTTCATAAAG+TGG 0.434093 7_3:+173416 Msa1087420:CDS
AATAAGAGGAGCAACATATA+AGG 0.440098 7_3:-174449 None:intergenic
GAAAGCCTTTGACAGCCTCC+TGG 0.444184 7_3:+175196 Msa1087420:CDS
AAAGAAGCGCGGTTTGTGTT+TGG 0.445528 7_3:-170599 None:intergenic
CGTGATCGATAAATGCTTGA+AGG 0.447597 7_3:-175043 None:intergenic
TGCTCACAAACAGATGGAAA+TGG 0.453362 7_3:+172234 Msa1087420:CDS
ATGTGATGGCTTACGGTGTC+GGG 0.454815 7_3:-174475 None:intergenic
GGGACACATGCAGCTGTAGC+TGG 0.457283 7_3:-173468 None:intergenic
CACGTTCACACTTATTCCAT+TGG 0.457925 7_3:-173511 None:intergenic
TGCAGGGAACTTGTGCAAGC+AGG 0.463242 7_3:+173231 Msa1087420:intron
AATAAAATATGTAAGGTTTG+AGG 0.465057 7_3:-170380 None:intergenic
TTAATAAAAGACAGCGGCTA+AGG 0.467268 7_3:+175320 Msa1087420:three_prime_UTR
TACAATGCTATCCAGAAGTT+GGG 0.474420 7_3:+175116 Msa1087420:CDS
GTAATGTATGATGCCGCGTA+CGG 0.474741 7_3:+175296 Msa1087420:three_prime_UTR
ATACAATGCTATCCAGAAGT+TGG 0.476685 7_3:+175115 Msa1087420:CDS
AATGCTTGAAGGGCTTGGTC+TGG 0.476962 7_3:-175032 None:intergenic
AGAGGAATCAGATCCGTAAC+GGG 0.477720 7_3:-172336 None:intergenic
TTAACTAGAGCTTCCCACCT+TGG 0.478200 7_3:-174358 None:intergenic
TCGATCACGGTGCTGTAGCC+AGG 0.478289 7_3:+175057 Msa1087420:CDS
GTAAATAAGTAAGGTGTTCG+AGG 0.483157 7_3:-170306 None:intergenic
GGAGCAACATATAAGGTGTC+AGG 0.483934 7_3:-174442 None:intergenic
CCAAGAAGCAAAGGCTCCTG+TGG 0.487273 7_3:+174389 Msa1087420:CDS
AACTCCAAAGTAAATAAGTA+AGG 0.490041 7_3:-170315 None:intergenic
CTGATTCCTCTTATTGAAAG+TGG 0.490876 7_3:+172348 Msa1087420:CDS
TGCATTTGAGTCTATTGTCC+TGG 0.491718 7_3:-175075 None:intergenic
TTACCTTGCCACGTAGATCA+AGG 0.493289 7_3:-174180 None:intergenic
GGTATTGATTGGAGCTATGT+TGG 0.495472 7_3:+175137 Msa1087420:CDS
TCAATTTATGATCAAACTGA+TGG 0.501880 7_3:+173324 Msa1087420:CDS
CCTCGTGAACTTAGCTCAGT+TGG 0.505210 7_3:-170419 None:intergenic
CGATAACTTCCTTAATTGAA+GGG 0.507817 7_3:-173488 None:intergenic
ATTAAGGAAGTTATCGCCAA+TGG 0.509849 7_3:+173495 Msa1087420:CDS
TAATGTATGATGCCGCGTAC+GGG 0.510892 7_3:+175297 Msa1087420:three_prime_UTR
CAGCCTCCTGGATTCACTGC+AGG 0.514881 7_3:+175208 Msa1087420:CDS
TGGAATCTTAATATACACAT+TGG 0.517086 7_3:-173448 None:intergenic
TTTCTGTTGAAGTATCTCCT+AGG 0.521652 7_3:+173361 Msa1087420:CDS
AGAAACAAGGGCAGAGTCCA+TGG 0.521731 7_3:+172295 Msa1087420:CDS
TATAAGGTGTCAGGATAGGC+AGG 0.522356 7_3:-174433 None:intergenic
CATGATCTTTATGAGAAACA+AGG 0.525914 7_3:+172282 Msa1087420:CDS
CCTGGATTCACTGCAGGAGA+AGG 0.526429 7_3:+175214 Msa1087420:CDS
TAATAAAAGACAGCGGCTAA+GGG 0.533896 7_3:+175321 Msa1087420:three_prime_UTR
GACTGTCCGATCTAAATCAA+TGG 0.535269 7_3:+175521 Msa1087420:three_prime_UTR
AGACATTGACAGTGCATACT+GGG 0.538449 7_3:+173257 Msa1087420:CDS
CTCGTTCTTTGTCAGTCGAG+TGG 0.539822 7_3:+174111 Msa1087420:CDS
TAACGCTGGTTGAAGCCCAC+AGG 0.542262 7_3:-174405 None:intergenic
GAAGGCAAAATCTCTTAAGC+TGG 0.547270 7_3:+175232 Msa1087420:CDS
TACAGCTTCATATCTTTCAA+GGG 0.547625 7_3:-174020 None:intergenic
GCAGGGAACTTGTGCAAGCA+GGG 0.547808 7_3:+173232 Msa1087420:intron
ACCTCAAAGAAGTTACAAAA+CGG 0.548564 7_3:-170733 None:intergenic
AATGTGATGGCTTACGGTGT+CGG 0.552602 7_3:-174476 None:intergenic
GTAATTGATGCTTACTTGGA+CGG 0.553368 7_3:+174040 Msa1087420:CDS
TGGACGGTCTGGAGGCATCT+GGG 0.554082 7_3:+174056 Msa1087420:CDS
GGTTCACAGCTTGAATTGGA+AGG 0.554895 7_3:+175158 Msa1087420:CDS
CTTAAGCTGGTCAGCAAGTG+AGG 0.557674 7_3:+175245 Msa1087420:CDS
AAACCAGCATACAAAGTACA+TGG 0.559423 7_3:-175448 None:intergenic
TACCTTGCCACGTAGATCAA+GGG 0.561590 7_3:-174179 None:intergenic
TCAGTATCCTCAGCAAGCCT+AGG 0.564022 7_3:-173378 None:intergenic
CCTCTGCCATTGATTTAGAT+CGG 0.567391 7_3:-175527 None:intergenic
TGCTTACTTGGACGGTCTGG+AGG 0.568623 7_3:+174048 Msa1087420:CDS
TGAATCCAGGAGGCTGTCAA+AGG 0.570972 7_3:-175201 None:intergenic
AGTCGAGATTTAAAATTGCA+TGG 0.571287 7_3:-175502 None:intergenic
CTTCAAGCATTTATCGATCA+CGG 0.571494 7_3:+175044 Msa1087420:CDS
TCAAATGCATCTGAAGCTGA+AGG 0.573568 7_3:+175089 Msa1087420:CDS
TTGAAGGGCTTGGTCTGGCA+TGG 0.574976 7_3:-175027 None:intergenic
AACATATAAGGTGTCAGGAT+AGG 0.576598 7_3:-174437 None:intergenic
ACGGTGTCGGGTCCAATAAG+AGG 0.578637 7_3:-174463 None:intergenic
GTGAACTTAGCTCAGTTGGT+TGG 0.579536 7_3:-170415 None:intergenic
ATTAGATGCTCACAAACAGA+TGG 0.579685 7_3:+172228 Msa1087420:CDS
GATCAAACTGATGGAGGTGA+TGG 0.584623 7_3:+173333 Msa1087420:CDS
CCGATCTAAATCAATGGCAG+AGG 0.586545 7_3:+175527 Msa1087420:three_prime_UTR
ACGTAGATCAAGGGCTTCTG+GGG 0.588870 7_3:-174170 None:intergenic
GTGATCGATAAATGCTTGAA+GGG 0.588921 7_3:-175042 None:intergenic
AGCCCTTGATCTACGTGGCA+AGG 0.589288 7_3:+174177 Msa1087420:CDS
AAGAGGAATCAGATCCGTAA+CGG 0.596662 7_3:-172337 None:intergenic
CAAGAAGCAAAGGCTCCTGT+GGG 0.597921 7_3:+174390 Msa1087420:CDS
TGCATGGTGCAATTATTGCA+GGG 0.598726 7_3:-175486 None:intergenic
ATGATCTTTATGAGAAACAA+GGG 0.602950 7_3:+172283 Msa1087420:CDS
ATTTATGATCAAACTGATGG+AGG 0.617182 7_3:+173327 Msa1087420:CDS
TGGAGTTCCTGCAAAGAGGA+CGG 0.623273 7_3:+172254 Msa1087420:CDS
ATACTGGGAACTTGTAGTGA+AGG 0.629191 7_3:+173272 Msa1087420:CDS
TACAACTATCTCGTTCACGC+TGG 0.630000 7_3:-170522 None:intergenic
AGGCTTGCTGAGGATACTGA+AGG 0.632568 7_3:+173381 Msa1087420:CDS
CGGCAGAGATTATCATACCA+TGG 0.638956 7_3:-172312 None:intergenic
GAATCTTAATATACACATTG+GGG 0.640842 7_3:-173446 None:intergenic
AGAAACAATGCTTATACACA+TGG 0.643168 7_3:+170271 None:intergenic
GAAATGGAGTTCCTGCAAAG+AGG 0.646124 7_3:+172250 Msa1087420:CDS
AATAAAAGACAGCGGCTAAG+GGG 0.653569 7_3:+175322 Msa1087420:three_prime_UTR
GAATCAGATCCGTAACGGGT+CGG 0.659162 7_3:-172332 None:intergenic
CAACACTTGTGACTCTAGAG+AGG 0.660116 7_3:-174087 None:intergenic
ATAGGCAGGATTCTTAACGC+TGG 0.660124 7_3:-174419 None:intergenic
AGTATCTCCTAGGCTTGCTG+AGG 0.671909 7_3:+173371 Msa1087420:CDS
GAGATTCTGGTAAAGAAGCG+CGG 0.678266 7_3:-170610 None:intergenic
CCAACTGAGCTAAGTTCACG+AGG 0.681889 7_3:+170419 Msa1087420:five_prime_UTR
CACTCGACTGACAAAGAACG+AGG 0.684880 7_3:-174110 None:intergenic
TCTCCTGCAGTGAATCCAGG+AGG 0.685827 7_3:-175211 None:intergenic
TTCTTAAAGAAGAAGCAGAG+AGG 0.689999 7_3:-170697 None:intergenic
CCAGAAGCCCTTGATCTACG+TGG 0.710968 7_3:+174172 Msa1087420:CDS
TACGGGTTAATAAAAGACAG+CGG 0.756696 7_3:+175314 Msa1087420:three_prime_UTR
AGGCGTCACTAGCAACCCAG+CGG 0.791833 7_3:+172377 Msa1087420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTATTAAAATTTT+TGG + chr7_3:171470-171489 Msa1087420:intron 0.0%
!!! ATTAAATACTTTTAATTTTC+AGG + chr7_3:171423-171442 Msa1087420:intron 10.0%
!! ACAAATTATTTAAAAATTCA+GGG - chr7_3:174740-174759 None:intergenic 10.0%
!! TACAAATTATTTAAAAATTC+AGG - chr7_3:174741-174760 None:intergenic 10.0%
!!! ATTTTTAAATAATTTGTATC+TGG + chr7_3:174743-174762 Msa1087420:intron 10.0%
!!! TTTTTAAATAATTTGTATCT+GGG + chr7_3:174744-174763 Msa1087420:intron 10.0%
!! GATTAAAAAACAATTATTTA+AGG + chr7_3:174816-174835 Msa1087420:intron 10.0%
!!! ATGTTTTAGTTTTAATATTA+TGG + chr7_3:175638-175657 Msa1087420:three_prime_UTR 10.0%
!! GCATAAAAATAAAATATGTA+AGG - chr7_3:170390-170409 None:intergenic 15.0%
!! TCTATATGACATTATTTAAT+TGG - chr7_3:171043-171062 None:intergenic 15.0%
!! ATATATATATAGTTGCATTA+TGG + chr7_3:171346-171365 Msa1087420:intron 15.0%
!! GTAAAAAAAAATTACACTAT+CGG + chr7_3:171391-171410 Msa1087420:intron 15.0%
!!! AAATTTGAAAGAAAAACTTT+TGG - chr7_3:172725-172744 None:intergenic 15.0%
!! TATAAAAAAAATAGAAATCG+AGG - chr7_3:173090-173109 None:intergenic 15.0%
!!! TCGATTTCTATTTTTTTTAT+AGG + chr7_3:173089-173108 Msa1087420:intron 15.0%
!!! ATTTCTATTTTTTTTATAGG+AGG + chr7_3:173092-173111 Msa1087420:intron 15.0%
!!! TTTCTATTTTTTTTATAGGA+GGG + chr7_3:173093-173112 Msa1087420:intron 15.0%
!!! AAGATCTAAAATTATACTTA+AGG - chr7_3:173133-173152 None:intergenic 15.0%
!!! TTATTATGTTGATTATATCA+AGG - chr7_3:173652-173671 None:intergenic 15.0%
!! TGATATAATCAACATAATAA+TGG + chr7_3:173652-173671 Msa1087420:intron 15.0%
!! GATATAATCAACATAATAAT+GGG + chr7_3:173653-173672 Msa1087420:intron 15.0%
!!! GACAATTTTTTCAAAATTTA+CGG + chr7_3:174789-174808 Msa1087420:intron 15.0%
!! AAAATGTTTAATTAATCTGA+AGG - chr7_3:174901-174920 None:intergenic 15.0%
!!! AGTAGTATACTCATTTTTTT+TGG + chr7_3:170340-170359 Msa1087420:five_prime_UTR 20.0%
!! AATAAAATATGTAAGGTTTG+AGG - chr7_3:170383-170402 None:intergenic 20.0%
!!! ACAATTTTCATTTTCAACAA+TGG + chr7_3:170544-170563 Msa1087420:exon 20.0%
!!! TTTTGATTTTTATACACTGA+CGG + chr7_3:170925-170944 Msa1087420:intron 20.0%
!! TAATGTCATATAGATATTTG+TGG + chr7_3:171049-171068 Msa1087420:intron 20.0%
!! AGAGATTAATCTCTAAATAA+TGG + chr7_3:171164-171183 Msa1087420:intron 20.0%
!!! CATGAAATTTGTTTTTTCAT+TGG + chr7_3:171531-171550 Msa1087420:intron 20.0%
!! AGCTTAACATTAAAGTTAAA+GGG - chr7_3:171821-171840 None:intergenic 20.0%
!! AAGCTTAACATTAAAGTTAA+AGG - chr7_3:171822-171841 None:intergenic 20.0%
!! TCATATTCATTATAAACTTG+AGG - chr7_3:172136-172155 None:intergenic 20.0%
!!! ATTTTTGAAACATTATTCCT+AGG - chr7_3:172510-172529 None:intergenic 20.0%
!! AATGTTTCAAAAATCAATAC+TGG + chr7_3:172516-172535 Msa1087420:intron 20.0%
!! AAACTAAATATACTTTGTGA+AGG - chr7_3:172855-172874 None:intergenic 20.0%
!!! AAAGTATATTTAGTTTAGCT+TGG + chr7_3:172859-172878 Msa1087420:intron 20.0%
!!! TTCTATTTTTTTTATAGGAG+GGG + chr7_3:173094-173113 Msa1087420:intron 20.0%
!! AAAATAGAACATTAAACTCA+CGG - chr7_3:173178-173197 None:intergenic 20.0%
!!! AATGTTCTATTTTTAATTCG+TGG + chr7_3:173185-173204 Msa1087420:intron 20.0%
!! ATAGATTTATGAACTATTTG+AGG + chr7_3:174578-174597 Msa1087420:intron 20.0%
!! AAAAAAAAAAACCAAGTTCA+GGG - chr7_3:174678-174697 None:intergenic 20.0%
!! TAAAAAAAAAAACCAAGTTC+AGG - chr7_3:174679-174698 None:intergenic 20.0%
! AACACCTTACTTATTTACTT+TGG + chr7_3:170311-170330 Msa1087420:five_prime_UTR 25.0%
! AACTCCAAAGTAAATAAGTA+AGG - chr7_3:170318-170337 None:intergenic 25.0%
!!! TATACTCATTTTTTTTGGAG+TGG + chr7_3:170345-170364 Msa1087420:five_prime_UTR 25.0%
! ACAGTCATTGGATATTTAAT+TGG - chr7_3:170975-170994 None:intergenic 25.0%
! CAATTATTGTATACAGTCAT+TGG - chr7_3:170987-171006 None:intergenic 25.0%
! TAAGAACTAACATGTAAAAG+TGG + chr7_3:171082-171101 Msa1087420:intron 25.0%
! ACTCTCTACAATTATCTATT+TGG - chr7_3:171280-171299 None:intergenic 25.0%
!!! ACAACTTAATTTGTAGCTTA+CGG + chr7_3:171568-171587 Msa1087420:intron 25.0%
! AAAATAAAGTCAAATTGCGT+AGG + chr7_3:171645-171664 Msa1087420:intron 25.0%
! TTGTCAGAATAATACTTAGT+GGG + chr7_3:171840-171859 Msa1087420:intron 25.0%
! TCAAATATACACCAAGTATA+TGG - chr7_3:172011-172030 None:intergenic 25.0%
!!! TACTTGGTGTATATTTGAAT+TGG + chr7_3:172013-172032 Msa1087420:intron 25.0%
! ATTCATTATAAACTTGAGGT+TGG - chr7_3:172132-172151 None:intergenic 25.0%
! ATGATCTTTATGAGAAACAA+GGG + chr7_3:172283-172302 Msa1087420:CDS 25.0%
! TAACATAAATTATTACCGCT+GGG - chr7_3:172395-172414 None:intergenic 25.0%
! ATAACATAAATTATTACCGC+TGG - chr7_3:172396-172415 None:intergenic 25.0%
! GTAATAATGAAAGACTTGTA+TGG + chr7_3:172442-172461 Msa1087420:intron 25.0%
!!! TTACAACTCTTAAAAGTGTT+TGG - chr7_3:172559-172578 None:intergenic 25.0%
! TGGTATTAGTATATGATTGA+TGG - chr7_3:172705-172724 None:intergenic 25.0%
! AAATAGAACATTAAACTCAC+GGG - chr7_3:173177-173196 None:intergenic 25.0%
! TAAAATTACATGATCATGCA+GGG + chr7_3:173215-173234 Msa1087420:intron 25.0%
! TCAATTTATGATCAAACTGA+TGG + chr7_3:173324-173343 Msa1087420:CDS 25.0%
! GAATCTTAATATACACATTG+GGG - chr7_3:173449-173468 None:intergenic 25.0%
! GGAATCTTAATATACACATT+GGG - chr7_3:173450-173469 None:intergenic 25.0%
! TGGAATCTTAATATACACAT+TGG - chr7_3:173451-173470 None:intergenic 25.0%
! TATGTTAACATGCTATAAGT+TGG + chr7_3:173596-173615 Msa1087420:intron 25.0%
! ATGTTAACATGCTATAAGTT+GGG + chr7_3:173597-173616 Msa1087420:intron 25.0%
!! ATAATCAACATAATAATGGG+TGG + chr7_3:173656-173675 Msa1087420:intron 25.0%
!!! TCACTTTTCCAAATTATTAC+TGG - chr7_3:173772-173791 None:intergenic 25.0%
! CTTCTAAATGAAGATGTATT+TGG - chr7_3:173855-173874 None:intergenic 25.0%
! ACAAATGTATATTTAGACTC+CGG - chr7_3:173981-174000 None:intergenic 25.0%
!! AAAATTTCTTTTGGTATAGC+TGG - chr7_3:174333-174352 None:intergenic 25.0%
!! CTATACCAAAAGAAATTTTC+TGG + chr7_3:174334-174353 Msa1087420:CDS 25.0%
! GGATTATTGAAAAAATGTGA+TGG - chr7_3:174492-174511 None:intergenic 25.0%
! TTCAATAATCCATTTGCTTA+TGG + chr7_3:174501-174520 Msa1087420:intron 25.0%
! AAACTGAAGAAAATACTACT+TGG - chr7_3:174548-174567 None:intergenic 25.0%
!! CTATTTGAGGATTTTCAAAA+AGG + chr7_3:174591-174610 Msa1087420:intron 25.0%
!! GAACATTTTTGACAATTTCA+GGG - chr7_3:174647-174666 None:intergenic 25.0%
!! TGAACATTTTTGACAATTTC+AGG - chr7_3:174648-174667 None:intergenic 25.0%
! CTTGTTAGGAATTTGTAATT+AGG - chr7_3:174843-174862 None:intergenic 25.0%
! CTTGATTATGTTAACAAACT+TGG + chr7_3:174943-174962 Msa1087420:intron 25.0%
! ACATAAAATGACATCAGATT+TGG - chr7_3:175622-175641 None:intergenic 25.0%
ACCTCAAAGAAGTTACAAAA+CGG - chr7_3:170736-170755 None:intergenic 30.0%
!!! TTCATGCTTATTTTTGCATG+CGG + chr7_3:170786-170805 Msa1087420:intron 30.0%
GATTAATTTCTATCCACTGA+CGG + chr7_3:171213-171232 Msa1087420:intron 30.0%
TCTATTTGGCATCATTTGAT+TGG - chr7_3:171266-171285 None:intergenic 30.0%
GCATTATGGAATGATTTGAT+TGG + chr7_3:171360-171379 Msa1087420:intron 30.0%
!!! GTTTTTTCATTGGTTCTGTT+TGG + chr7_3:171541-171560 Msa1087420:intron 30.0%
TTGGCTTATTTACTGACATA+AGG - chr7_3:171789-171808 None:intergenic 30.0%
ATTAAAGTTAAAGGGCTGTT+TGG - chr7_3:171813-171832 None:intergenic 30.0%
CTTGTCAGAATAATACTTAG+TGG + chr7_3:171839-171858 Msa1087420:intron 30.0%
ACAGTATAACACCATGATTT+CGG - chr7_3:171966-171985 None:intergenic 30.0%
ATATACACCAAGTATATGGT+TGG - chr7_3:172007-172026 None:intergenic 30.0%
TTGGTGTATATTTGAATTGG+TGG + chr7_3:172016-172035 Msa1087420:intron 30.0%
! TGTTGCTATTGTCAAAATCA+TGG + chr7_3:172088-172107 Msa1087420:intron 30.0%
! CCTCAATATAAATGTCGATT+AGG - chr7_3:172174-172193 None:intergenic 30.0%
CCTAATCGACATTTATATTG+AGG + chr7_3:172171-172190 Msa1087420:intron 30.0%
CATGATCTTTATGAGAAACA+AGG + chr7_3:172282-172301 Msa1087420:CDS 30.0%
! CGAAGATATTTTTCTATCCT+AGG + chr7_3:172490-172509 Msa1087420:intron 30.0%
TGTTGTCAAATTGTAGATGT+AGG - chr7_3:172963-172982 None:intergenic 30.0%
TCACGGGAATATAATACTTA+AGG - chr7_3:173161-173180 None:intergenic 30.0%
!!! TCTATTTTTAATTCGTGGTG+TGG + chr7_3:173190-173209 Msa1087420:intron 30.0%
CTAAAATTACATGATCATGC+AGG + chr7_3:173214-173233 Msa1087420:intron 30.0%
ATTTATGATCAAACTGATGG+AGG + chr7_3:173327-173346 Msa1087420:CDS 30.0%
CGATAACTTCCTTAATTGAA+GGG - chr7_3:173491-173510 None:intergenic 30.0%
! TGTTGATTATATCAAGGACA+AGG - chr7_3:173646-173665 None:intergenic 30.0%
TGTTGACACCAGTAATAATT+TGG + chr7_3:173761-173780 Msa1087420:intron 30.0%
GGAGTCTAAATATACATTTG+TGG + chr7_3:173980-173999 Msa1087420:intron 30.0%
TACAGCTTCATATCTTTCAA+GGG - chr7_3:174023-174042 None:intergenic 30.0%
TTACAGCTTCATATCTTTCA+AGG - chr7_3:174024-174043 None:intergenic 30.0%
GCAATAAAGAAAAGAGTAAG+CGG - chr7_3:174206-174225 None:intergenic 30.0%
! TTATTGCCAATTTTTGCGTT+TGG + chr7_3:174219-174238 Msa1087420:intron 30.0%
TCAAATCCAAACGCAAAAAT+TGG - chr7_3:174228-174247 None:intergenic 30.0%
AATAAGAGGAGCAACATATA+AGG - chr7_3:174452-174471 None:intergenic 30.0%
TTATATGTTGCTCCTCTTAT+TGG + chr7_3:174451-174470 Msa1087420:CDS 30.0%
TGAAAAAATGTGATGGCTTA+CGG - chr7_3:174485-174504 None:intergenic 30.0%
CCATAATAACCATAAGCAAA+TGG - chr7_3:174513-174532 None:intergenic 30.0%
CCATTTGCTTATGGTTATTA+TGG + chr7_3:174510-174529 Msa1087420:intron 30.0%
TACAAATTCCTAACAAGTTC+AGG + chr7_3:174846-174865 Msa1087420:intron 30.0%
ACAAATTCCTAACAAGTTCA+GGG + chr7_3:174847-174866 Msa1087420:intron 30.0%
! ATTAAATCCCTGAACTTGTT+AGG - chr7_3:174857-174876 None:intergenic 30.0%
TCTTTAATGAACATCTCGTT+AGG + chr7_3:174920-174939 Msa1087420:intron 30.0%
GTAATGTTAGTTCAGGTATT+AGG - chr7_3:174981-175000 None:intergenic 30.0%
CACAGATGATTTATCATTCT+AGG - chr7_3:175368-175387 None:intergenic 30.0%
! CATTGTTAGTCTGAAATTCT+TGG + chr7_3:175397-175416 Msa1087420:three_prime_UTR 30.0%
!!! TACTTTGTATGCTGGTTTTT+AGG + chr7_3:175453-175472 Msa1087420:three_prime_UTR 30.0%
!!! ACTTTGTATGCTGGTTTTTA+GGG + chr7_3:175454-175473 Msa1087420:three_prime_UTR 30.0%
! AGTCGAGATTTAAAATTGCA+TGG - chr7_3:175505-175524 None:intergenic 30.0%
! GTAAATAAGTAAGGTGTTCG+AGG - chr7_3:170309-170328 None:intergenic 35.0%
AACAATGGCTTCTTCACTTT+CGG + chr7_3:170559-170578 Msa1087420:exon 35.0%
TTCTTAAAGAAGAAGCAGAG+AGG - chr7_3:170700-170719 None:intergenic 35.0%
! ACCGTTTTGTAACTTCTTTG+AGG + chr7_3:170732-170751 Msa1087420:CDS 35.0%
!!! CGATGTGTTTTGTTGTTGTA+AGG + chr7_3:170888-170907 Msa1087420:intron 35.0%
! GTTGTAAGGATGTGTTTTGT+TGG + chr7_3:170902-170921 Msa1087420:intron 35.0%
GAAAATATTTACACCGTCAG+TGG - chr7_3:171229-171248 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTAAGT+TGG + chr7_3:171673-171692 Msa1087420:intron 35.0%
TCAGAATAATACTTAGTGGG+TGG + chr7_3:171843-171862 Msa1087420:intron 35.0%
TGGTGAGTTATGCAAAATCA+CGG + chr7_3:172036-172055 Msa1087420:intron 35.0%
GTCGATTAGGAAACAAAACA+AGG - chr7_3:172161-172180 None:intergenic 35.0%
ATTAGATGCTCACAAACAGA+TGG + chr7_3:172228-172247 Msa1087420:CDS 35.0%
CTGATTCCTCTTATTGAAAG+TGG + chr7_3:172348-172367 Msa1087420:CDS 35.0%
CTAACACCACTTTCAATAAG+AGG - chr7_3:172357-172376 None:intergenic 35.0%
! CTTATTGAAAGTGGTGTTAG+AGG + chr7_3:172357-172376 Msa1087420:CDS 35.0%
ATATCTTCGCACAAGTAGAA+CGG - chr7_3:172479-172498 None:intergenic 35.0%
GTGCTTACAATGATCAATTC+AGG + chr7_3:172677-172696 Msa1087420:CDS 35.0%
CAATAAAGTAGAGTAAACCG+TGG + chr7_3:172751-172770 Msa1087420:intron 35.0%
GAGTAATACAACGATTATGC+AGG - chr7_3:172817-172836 None:intergenic 35.0%
TAGCTTGGTAAACTACACAA+AGG + chr7_3:172874-172893 Msa1087420:intron 35.0%
! TTTCTGTTGAAGTATCTCCT+AGG + chr7_3:173361-173380 Msa1087420:CDS 35.0%
TGCAAAATGGCTTCATAAAG+TGG + chr7_3:173416-173435 Msa1087420:CDS 35.0%
GCGATAACTTCCTTAATTGA+AGG - chr7_3:173492-173511 None:intergenic 35.0%
ATTAAGGAAGTTATCGCCAA+TGG + chr7_3:173495-173514 Msa1087420:CDS 35.0%
GTTATGCTAGTTAGAAGTGA+GGG + chr7_3:173686-173705 Msa1087420:intron 35.0%
TTGAATGTAACCTCATGTGT+TGG + chr7_3:173792-173811 Msa1087420:intron 35.0%
! ATTTGGTGAATGACATGTGT+CGG - chr7_3:173838-173857 None:intergenic 35.0%
!! GATTACTTTTACCATGTTGC+CGG + chr7_3:173959-173978 Msa1087420:intron 35.0%
AGCTGTAATTGATGCTTACT+TGG + chr7_3:174036-174055 Msa1087420:CDS 35.0%
GTAATTGATGCTTACTTGGA+CGG + chr7_3:174040-174059 Msa1087420:CDS 35.0%
GACAAGATGCTTGAGAAAAT+TGG + chr7_3:174145-174164 Msa1087420:CDS 35.0%
! TTGGGCCAGAAAATTTCTTT+TGG - chr7_3:174342-174361 None:intergenic 35.0%
!! AAAAGAAATTTTCTGGCCCA+AGG + chr7_3:174341-174360 Msa1087420:CDS 35.0%
! TGGGAAGCTCTAGTTAAAAA+AGG + chr7_3:174364-174383 Msa1087420:CDS 35.0%
! GGGAAGCTCTAGTTAAAAAA+GGG + chr7_3:174365-174384 Msa1087420:CDS 35.0%
! GGAAGCTCTAGTTAAAAAAG+GGG + chr7_3:174366-174385 Msa1087420:CDS 35.0%
! AACATATAAGGTGTCAGGAT+AGG - chr7_3:174440-174459 None:intergenic 35.0%
TTCATTTAGATCCCTGAACT+TGG + chr7_3:174664-174683 Msa1087420:intron 35.0%
TGAGAAGGTAATGTTAGTTC+AGG - chr7_3:174988-175007 None:intergenic 35.0%
GTGATCGATAAATGCTTGAA+GGG - chr7_3:175045-175064 None:intergenic 35.0%
CTTCAAGCATTTATCGATCA+CGG + chr7_3:175044-175063 Msa1087420:CDS 35.0%
ATACAATGCTATCCAGAAGT+TGG + chr7_3:175115-175134 Msa1087420:CDS 35.0%
TACAATGCTATCCAGAAGTT+GGG + chr7_3:175116-175135 Msa1087420:CDS 35.0%
! TACGGGTTAATAAAAGACAG+CGG + chr7_3:175314-175333 Msa1087420:three_prime_UTR 35.0%
TTAATAAAAGACAGCGGCTA+AGG + chr7_3:175320-175339 Msa1087420:three_prime_UTR 35.0%
TAATAAAAGACAGCGGCTAA+GGG + chr7_3:175321-175340 Msa1087420:three_prime_UTR 35.0%
TTTCCATGTACTTTGTATGC+TGG + chr7_3:175445-175464 Msa1087420:three_prime_UTR 35.0%
AAACCAGCATACAAAGTACA+TGG - chr7_3:175451-175470 None:intergenic 35.0%
! AGCTAAGAAGCTCGTTTTGA+TGG - chr7_3:170648-170667 None:intergenic 40.0%
AGTTAAAGGGCTGTTTGGAT+TGG - chr7_3:171808-171827 None:intergenic 40.0%
GCTATTACAAACCGACTGTA+AGG - chr7_3:171875-171894 None:intergenic 40.0%
!! ACAGTCGGTTTGTAATAGCA+CGG + chr7_3:171876-171895 Msa1087420:intron 40.0%
ACGGTGTTTGACAAAGTTAC+AGG + chr7_3:171895-171914 Msa1087420:intron 40.0%
CGGTGTTTGACAAAGTTACA+GGG + chr7_3:171896-171915 Msa1087420:intron 40.0%
GGTGTTTGACAAAGTTACAG+GGG + chr7_3:171897-171916 Msa1087420:intron 40.0%
TTTCGGCAAAAGCTGCAATT+TGG - chr7_3:171949-171968 None:intergenic 40.0%
! CAAGTATATGGTTGGATTGG+TGG - chr7_3:171999-172018 None:intergenic 40.0%
CACCAATCCAACCATATACT+TGG + chr7_3:171997-172016 Msa1087420:intron 40.0%
CACCAAGTATATGGTTGGAT+TGG - chr7_3:172002-172021 None:intergenic 40.0%
TGAGTTATGCAAAATCACGG+TGG + chr7_3:172039-172058 Msa1087420:intron 40.0%
TGAGGCAAACATTTGACTGT+TGG + chr7_3:172189-172208 Msa1087420:intron 40.0%
GCAAACATTTGACTGTTGGT+TGG + chr7_3:172193-172212 Msa1087420:intron 40.0%
TGCTCACAAACAGATGGAAA+TGG + chr7_3:172234-172253 Msa1087420:CDS 40.0%
AAGAGGAATCAGATCCGTAA+CGG - chr7_3:172340-172359 None:intergenic 40.0%
CTGCAATCATGTGGTATAGA+CGG - chr7_3:172629-172648 None:intergenic 40.0%
CTGAAAGATCTGCAATCATG+TGG - chr7_3:172638-172657 None:intergenic 40.0%
TAAAGTAGAGTAAACCGTGG+AGG + chr7_3:172754-172773 Msa1087420:intron 40.0%
AAGGTCAATGTTGTCAATCC+CGG + chr7_3:172893-172912 Msa1087420:intron 40.0%
AATCGCAATTCTCTGTGATC+CGG - chr7_3:172915-172934 None:intergenic 40.0%
GTGTACTAAATCGTGTATCG+CGG + chr7_3:172985-173004 Msa1087420:intron 40.0%
GCATAGAGAGTTTGGAGAAA+CGG - chr7_3:173019-173038 None:intergenic 40.0%
TCTCCAAACTCTCTATGCTA+TGG + chr7_3:173021-173040 Msa1087420:intron 40.0%
AAGACATTGACAGTGCATAC+TGG + chr7_3:173256-173275 Msa1087420:CDS 40.0%
AGACATTGACAGTGCATACT+GGG + chr7_3:173257-173276 Msa1087420:CDS 40.0%
ATACTGGGAACTTGTAGTGA+AGG + chr7_3:173272-173291 Msa1087420:CDS 40.0%
GAACCATAGAAGCTGCAAAA+TGG + chr7_3:173403-173422 Msa1087420:CDS 40.0%
!! AAGCCATTTTGCAGCTTCTA+TGG - chr7_3:173409-173428 None:intergenic 40.0%
TGCATGTGTCCCTTCAATTA+AGG + chr7_3:173479-173498 Msa1087420:CDS 40.0%
CACGTTCACACTTATTCCAT+TGG - chr7_3:173514-173533 None:intergenic 40.0%
!! CATAATAATGGGTGGTAGCA+AGG + chr7_3:173664-173683 Msa1087420:intron 40.0%
GGTTATGCTAGTTAGAAGTG+AGG + chr7_3:173685-173704 Msa1087420:intron 40.0%
GTCAATATCAGTGATGTGTC+TGG - chr7_3:173740-173759 None:intergenic 40.0%
ATATTTAGACTCCGGCAACA+TGG - chr7_3:173973-173992 None:intergenic 40.0%
TATCTGGGTCCTTAAAGTCA+GGG + chr7_3:174759-174778 Msa1087420:intron 40.0%
TCATCAAGTCCCTGACTTTA+AGG - chr7_3:174771-174790 None:intergenic 40.0%
TACCTTCTCATTTACTTCCC+AGG + chr7_3:174998-175017 Msa1087420:intron 40.0%
TACCTGGGAAGTAAATGAGA+AGG - chr7_3:175003-175022 None:intergenic 40.0%
CGTGATCGATAAATGCTTGA+AGG - chr7_3:175046-175065 None:intergenic 40.0%
TGCATTTGAGTCTATTGTCC+TGG - chr7_3:175078-175097 None:intergenic 40.0%
! TCAAATGCATCTGAAGCTGA+AGG + chr7_3:175089-175108 Msa1087420:CDS 40.0%
!! TCCAGAAGTTGGGTATTGAT+TGG + chr7_3:175126-175145 Msa1087420:CDS 40.0%
TCCAATCAATACCCAACTTC+TGG - chr7_3:175130-175149 None:intergenic 40.0%
!! GGTATTGATTGGAGCTATGT+TGG + chr7_3:175137-175156 Msa1087420:CDS 40.0%
!! TGTTGGTTCACAGCTTGAAT+TGG + chr7_3:175154-175173 Msa1087420:CDS 40.0%
GAAGGCAAAATCTCTTAAGC+TGG + chr7_3:175232-175251 Msa1087420:CDS 40.0%
CAAGTGAGGTGTGAACTTTA+TGG + chr7_3:175259-175278 Msa1087420:exon 40.0%
! GTCTTTTATTAACCCGTACG+CGG - chr7_3:175312-175331 None:intergenic 40.0%
AATAAAAGACAGCGGCTAAG+GGG + chr7_3:175322-175341 Msa1087420:three_prime_UTR 40.0%
TGCATGGTGCAATTATTGCA+GGG - chr7_3:175489-175508 None:intergenic 40.0%
TTGCATGGTGCAATTATTGC+AGG - chr7_3:175490-175509 None:intergenic 40.0%
GACTGTCCGATCTAAATCAA+TGG + chr7_3:175521-175540 Msa1087420:three_prime_UTR 40.0%
!! CCTCTGCCATTGATTTAGAT+CGG - chr7_3:175530-175549 None:intergenic 40.0%
GTGAACTTAGCTCAGTTGGT+TGG - chr7_3:170418-170437 None:intergenic 45.0%
TACAACTATCTCGTTCACGC+TGG - chr7_3:170525-170544 None:intergenic 45.0%
! AAAGAAGCGCGGTTTGTGTT+TGG - chr7_3:170602-170621 None:intergenic 45.0%
GAGATTCTGGTAAAGAAGCG+CGG - chr7_3:170613-170632 None:intergenic 45.0%
GATCTGGATCGAAGAGATTC+TGG - chr7_3:170626-170645 None:intergenic 45.0%
!! GAAGCTCGTTTTGATGGATC+TGG - chr7_3:170642-170661 None:intergenic 45.0%
TTTGTAGCTTACGGCGTAAG+TGG + chr7_3:171577-171596 Msa1087420:intron 45.0%
GGTGGTATTTGCCTTACAGT+CGG + chr7_3:171861-171880 Msa1087420:intron 45.0%
! TGCAGCTTTTGCCGAAATCA+TGG + chr7_3:171952-171971 Msa1087420:intron 45.0%
ACTTGAGGTTGGCAGAATCA+TGG - chr7_3:172121-172140 None:intergenic 45.0%
TGTGAGCATCTAATCCTGCA+AGG - chr7_3:172222-172241 None:intergenic 45.0%
GAAATGGAGTTCCTGCAAAG+AGG + chr7_3:172250-172269 Msa1087420:CDS 45.0%
CGGCAGAGATTATCATACCA+TGG - chr7_3:172315-172334 None:intergenic 45.0%
AGAGGAATCAGATCCGTAAC+GGG - chr7_3:172339-172358 None:intergenic 45.0%
ATCGCAATTCTCTGTGATCC+GGG - chr7_3:172914-172933 None:intergenic 45.0%
GATCAAACTGATGGAGGTGA+TGG + chr7_3:173333-173352 Msa1087420:CDS 45.0%
! CAACACTTGTGACTCTAGAG+AGG - chr7_3:174090-174109 None:intergenic 45.0%
TACCTTGCCACGTAGATCAA+GGG - chr7_3:174182-174201 None:intergenic 45.0%
TTACCTTGCCACGTAGATCA+AGG - chr7_3:174183-174202 None:intergenic 45.0%
!! AGAAATTTTCTGGCCCAAGG+TGG + chr7_3:174344-174363 Msa1087420:CDS 45.0%
!! GAAATTTTCTGGCCCAAGGT+GGG + chr7_3:174345-174364 Msa1087420:CDS 45.0%
TAACTAGAGCTTCCCACCTT+GGG - chr7_3:174360-174379 None:intergenic 45.0%
TTAACTAGAGCTTCCCACCT+TGG - chr7_3:174361-174380 None:intergenic 45.0%
AAAAAGGGGCCAAGAAGCAA+AGG + chr7_3:174380-174399 Msa1087420:CDS 45.0%
ATAGGCAGGATTCTTAACGC+TGG - chr7_3:174422-174441 None:intergenic 45.0%
! TATAAGGTGTCAGGATAGGC+AGG - chr7_3:174436-174455 None:intergenic 45.0%
! GGAGCAACATATAAGGTGTC+AGG - chr7_3:174445-174464 None:intergenic 45.0%
AATGTGATGGCTTACGGTGT+CGG - chr7_3:174479-174498 None:intergenic 45.0%
GTATCTGGGTCCTTAAAGTC+AGG + chr7_3:174758-174777 Msa1087420:intron 45.0%
CGATAAATGCTTGAAGGGCT+TGG - chr7_3:175040-175059 None:intergenic 45.0%
GGTTCACAGCTTGAATTGGA+AGG + chr7_3:175158-175177 Msa1087420:CDS 45.0%
GTAATGTATGATGCCGCGTA+CGG + chr7_3:175296-175315 Msa1087420:three_prime_UTR 45.0%
TAATGTATGATGCCGCGTAC+GGG + chr7_3:175297-175316 Msa1087420:three_prime_UTR 45.0%
CCGATCTAAATCAATGGCAG+AGG + chr7_3:175527-175546 Msa1087420:three_prime_UTR 45.0%
!!! TTAAATAATTGTTTTTTAAT+CGG - chr7_3:174817-174836 None:intergenic 5.0%
!! ATTAAAAAACAATTATTTAA+GGG + chr7_3:174817-174836 Msa1087420:intron 5.0%
CCTCGTGAACTTAGCTCAGT+TGG - chr7_3:170422-170441 None:intergenic 50.0%
CCAACTGAGCTAAGTTCACG+AGG + chr7_3:170419-170438 Msa1087420:five_prime_UTR 50.0%
TGGAGTTCCTGCAAAGAGGA+CGG + chr7_3:172254-172273 Msa1087420:CDS 50.0%
TGAAGAACCGTCCTCTTTGC+AGG - chr7_3:172264-172283 None:intergenic 50.0%
AGAAACAAGGGCAGAGTCCA+TGG + chr7_3:172295-172314 Msa1087420:CDS 50.0%
TAATCTCTGCCGACCCGTTA+CGG + chr7_3:172323-172342 Msa1087420:CDS 50.0%
!! GAATCAGATCCGTAACGGGT+CGG - chr7_3:172335-172354 None:intergenic 50.0%
GAGACATGTCTATGCCTCCA+CGG - chr7_3:172771-172790 None:intergenic 50.0%
GCGCCATAGCATAGAGAGTT+TGG - chr7_3:173027-173046 None:intergenic 50.0%
TGGCGCGATAGAGATGCTAT+TGG + chr7_3:173041-173060 Msa1087420:intron 50.0%
!! AGTATCTCCTAGGCTTGCTG+AGG + chr7_3:173371-173390 Msa1087420:CDS 50.0%
TCAGTATCCTCAGCAAGCCT+AGG - chr7_3:173381-173400 None:intergenic 50.0%
!! AGGCTTGCTGAGGATACTGA+AGG + chr7_3:173381-173400 Msa1087420:CDS 50.0%
TGATGCTTACTTGGACGGTC+TGG + chr7_3:174045-174064 Msa1087420:CDS 50.0%
CACTCGACTGACAAAGAACG+AGG - chr7_3:174113-174132 None:intergenic 50.0%
CTCGTTCTTTGTCAGTCGAG+TGG + chr7_3:174111-174130 Msa1087420:CDS 50.0%
ACGTAGATCAAGGGCTTCTG+GGG - chr7_3:174173-174192 None:intergenic 50.0%
CACGTAGATCAAGGGCTTCT+GGG - chr7_3:174174-174193 None:intergenic 50.0%
CAAGAAGCAAAGGCTCCTGT+GGG + chr7_3:174390-174409 Msa1087420:CDS 50.0%
ATGTGATGGCTTACGGTGTC+GGG - chr7_3:174478-174497 None:intergenic 50.0%
GTCTGGCATGGTAGATACCT+GGG - chr7_3:175018-175037 None:intergenic 50.0%
! AATGCTTGAAGGGCTTGGTC+TGG - chr7_3:175035-175054 None:intergenic 50.0%
TGAATCCAGGAGGCTGTCAA+AGG - chr7_3:175204-175223 None:intergenic 50.0%
CTTAAGCTGGTCAGCAAGTG+AGG + chr7_3:175245-175264 Msa1087420:CDS 50.0%
! CTGTTGGTTGGTGTCCTTGC+AGG + chr7_3:172205-172224 Msa1087420:intron 55.0%
TGCAGGGAACTTGTGCAAGC+AGG + chr7_3:173231-173250 Msa1087420:intron 55.0%
GCAGGGAACTTGTGCAAGCA+GGG + chr7_3:173232-173251 Msa1087420:intron 55.0%
CGAAGCGACACCAACACATG+AGG - chr7_3:173805-173824 None:intergenic 55.0%
TGCTTACTTGGACGGTCTGG+AGG + chr7_3:174048-174067 Msa1087420:CDS 55.0%
CCACGTAGATCAAGGGCTTC+TGG - chr7_3:174175-174194 None:intergenic 55.0%
CCAGAAGCCCTTGATCTACG+TGG + chr7_3:174172-174191 Msa1087420:CDS 55.0%
AGCCCTTGATCTACGTGGCA+AGG + chr7_3:174177-174196 Msa1087420:CDS 55.0%
!! CTGGTAAGCCAGTGCTGCTT+GGG - chr7_3:174314-174333 None:intergenic 55.0%
CCACAGGAGCCTTTGCTTCT+TGG - chr7_3:174392-174411 None:intergenic 55.0%
CCAAGAAGCAAAGGCTCCTG+TGG + chr7_3:174389-174408 Msa1087420:CDS 55.0%
! TAACGCTGGTTGAAGCCCAC+AGG - chr7_3:174408-174427 None:intergenic 55.0%
! ACGGTGTCGGGTCCAATAAG+AGG - chr7_3:174466-174485 None:intergenic 55.0%
GGTCTGGCATGGTAGATACC+TGG - chr7_3:175019-175038 None:intergenic 55.0%
! TTGAAGGGCTTGGTCTGGCA+TGG - chr7_3:175030-175049 None:intergenic 55.0%
GAAAGCCTTTGACAGCCTCC+TGG + chr7_3:175196-175215 Msa1087420:CDS 55.0%
TCTCCTGCAGTGAATCCAGG+AGG - chr7_3:175214-175233 None:intergenic 55.0%
CCTTCTCCTGCAGTGAATCC+AGG - chr7_3:175217-175236 None:intergenic 55.0%
CCTGGATTCACTGCAGGAGA+AGG + chr7_3:175214-175233 Msa1087420:CDS 55.0%
AGGCGTCACTAGCAACCCAG+CGG + chr7_3:172377-172396 Msa1087420:CDS 60.0%
GGGACACATGCAGCTGTAGC+TGG - chr7_3:173471-173490 None:intergenic 60.0%
!! TTGGACGGTCTGGAGGCATC+TGG + chr7_3:174055-174074 Msa1087420:CDS 60.0%
!! TGGACGGTCTGGAGGCATCT+GGG + chr7_3:174056-174075 Msa1087420:CDS 60.0%
AGCAGTAGCCCAAGCAGCAC+TGG + chr7_3:174303-174322 Msa1087420:CDS 60.0%
! GCTGGTAAGCCAGTGCTGCT+TGG - chr7_3:174315-174334 None:intergenic 60.0%
!! TCGATCACGGTGCTGTAGCC+AGG + chr7_3:175057-175076 Msa1087420:CDS 60.0%
CAGCCTCCTGGATTCACTGC+AGG + chr7_3:175208-175227 Msa1087420:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 170283 175663 170283 ID=Msa1087420;Name=Msa1087420
chr7_3 mRNA 170283 175663 170283 ID=Msa1087420-mRNA-1;Parent=Msa1087420;Name=Msa1087420-mRNA-1;_AED=0.03;_eAED=0.03;_QI=280|1|1|1|1|1|7|398|443
chr7_3 exon 170283 170753 170283 ID=Msa1087420-mRNA-1:exon:39;Parent=Msa1087420-mRNA-1
chr7_3 exon 172227 172398 172227 ID=Msa1087420-mRNA-1:exon:40;Parent=Msa1087420-mRNA-1
chr7_3 exon 172649 172698 172649 ID=Msa1087420-mRNA-1:exon:41;Parent=Msa1087420-mRNA-1
chr7_3 exon 173236 173536 173236 ID=Msa1087420-mRNA-1:exon:42;Parent=Msa1087420-mRNA-1
chr7_3 exon 174010 174198 174010 ID=Msa1087420-mRNA-1:exon:43;Parent=Msa1087420-mRNA-1
chr7_3 exon 174301 174483 174301 ID=Msa1087420-mRNA-1:exon:44;Parent=Msa1087420-mRNA-1
chr7_3 exon 175020 175663 175020 ID=Msa1087420-mRNA-1:exon:45;Parent=Msa1087420-mRNA-1
chr7_3 five_prime_UTR 170283 170562 170283 ID=Msa1087420-mRNA-1:five_prime_utr;Parent=Msa1087420-mRNA-1
chr7_3 CDS 170563 170753 170563 ID=Msa1087420-mRNA-1:cds;Parent=Msa1087420-mRNA-1
chr7_3 CDS 172227 172398 172227 ID=Msa1087420-mRNA-1:cds;Parent=Msa1087420-mRNA-1
chr7_3 CDS 172649 172698 172649 ID=Msa1087420-mRNA-1:cds;Parent=Msa1087420-mRNA-1
chr7_3 CDS 173236 173536 173236 ID=Msa1087420-mRNA-1:cds;Parent=Msa1087420-mRNA-1
chr7_3 CDS 174010 174198 174010 ID=Msa1087420-mRNA-1:cds;Parent=Msa1087420-mRNA-1
chr7_3 CDS 174301 174483 174301 ID=Msa1087420-mRNA-1:cds;Parent=Msa1087420-mRNA-1
chr7_3 CDS 175020 175265 175020 ID=Msa1087420-mRNA-1:cds;Parent=Msa1087420-mRNA-1
chr7_3 three_prime_UTR 175266 175663 175266 ID=Msa1087420-mRNA-1:three_prime_utr;Parent=Msa1087420-mRNA-1
Gene Sequence

>Msa1087420

ATGGCTTCTTCACTTTCGGTTTCGAAGATCACAACACCAAACACAAACCGCGCTTCTTTACCAGAATCTCTTCGATCCAGATCCATCAAAACGAGCTTCTTAGCTTTCAACAATACAAATGATTTCAAAACTAACCTCTCTGCTTCTTCTTTAAGAACAACTCGTGAAAACCGTTTTGTAACTTCTTTGAGGATTAGATGCTCACAAACAGATGGAAATGGAGTTCCTGCAAAGAGGACGGTTCTTCATGATCTTTATGAGAAACAAGGGCAGAGTCCATGGTATGATAATCTCTGCCGACCCGTTACGGATCTGATTCCTCTTATTGAAAGTGGTGTTAGAGGCGTCACTAGCAACCCAGCGATCTTTCAGAAAGCTATTTCATCTTCAAGTGCTTACAATGATCAATTCAGGGAACTTGTGCAAGCAGGGAAAGACATTGACAGTGCATACTGGGAACTTGTAGTGAAGGACATTCAAGATGCTTGCAAACTATTTGAATCAATTTATGATCAAACTGATGGAGGTGATGGCTATGTTTCTGTTGAAGTATCTCCTAGGCTTGCTGAGGATACTGAAGGAACCATAGAAGCTGCAAAATGGCTTCATAAAGTGGTTTCTCGCCCCAATGTGTATATTAAGATTCCAGCTACAGCTGCATGTGTCCCTTCAATTAAGGAAGTTATCGCCAATGGAATAAGTGTGAACGTGACTCTGATATTCTCCCTTGAAAGATATGAAGCTGTAATTGATGCTTACTTGGACGGTCTGGAGGCATCTGGGTTAAATGACCTCTCTAGAGTCACAAGTGTTGCCTCGTTCTTTGTCAGTCGAGTGGACACTCTCATTGACAAGATGCTTGAGAAAATTGGCACCCCAGAAGCCCTTGATCTACGTGGCAAGGCAGCAGTAGCCCAAGCAGCACTGGCTTACCAGCTATACCAAAAGAAATTTTCTGGCCCAAGGTGGGAAGCTCTAGTTAAAAAAGGGGCCAAGAAGCAAAGGCTCCTGTGGGCTTCAACCAGCGTTAAGAATCCTGCCTATCCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACCGTATCTACCATGCCAGACCAAGCCCTTCAAGCATTTATCGATCACGGTGCTGTAGCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACAATGCTATCCAGAAGTTGGGTATTGATTGGAGCTATGTTGGTTCACAGCTTGAATTGGAAGGAGTTGATTCATTCAAGAAAGCCTTTGACAGCCTCCTGGATTCACTGCAGGAGAAGGCAAAATCTCTTAAGCTGGTCAGCAAGTGA

Protein sequence

>Msa1087420

MASSLSVSKITTPNTNRASLPESLRSRSIKTSFLAFNNTNDFKTNLSASSLRTTRENRFVTSLRIRCSQTDGNGVPAKRTVLHDLYEKQGQSPWYDNLCRPVTDLIPLIESGVRGVTSNPAIFQKAISSSSAYNDQFRELVQAGKDIDSAYWELVVKDIQDACKLFESIYDQTDGGDGYVSVEVSPRLAEDTEGTIEAAKWLHKVVSRPNVYIKIPATAACVPSIKEVIANGISVNVTLIFSLERYEAVIDAYLDGLEASGLNDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFIDHGAVARTIDSNASEAEGIYNAIQKLGIDWSYVGSQLELEGVDSFKKAFDSLLDSLQEKAKSLKLVSK*