AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1350590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1350590 MtrunA17_Chr7g0262621 66.892 148 34 5 1 144 1 137 3.87e-59 179
Msa1350590 MtrunA17_Chr1g0182931 92.754 138 7 1 11 145 11 148 6.81e-55 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1350590 AT2G20260.1 62.329 146 46 3 5 144 2 144 1.66e-44 143
Msa1350590 AT4G28750.1 58.621 145 50 3 5 144 2 141 9.46e-35 118

Find 87 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGTAAACTTTAAGATTA+TGG 0.127183 tig0011622:+119536 None:intergenic
CATTGGCGTAGTTCACTTTC+TGG 0.135317 tig0011622:+119752 None:intergenic
GTTAGTTTGGTTGTTTATTT+TGG 0.151055 tig0011622:+120882 None:intergenic
CCAATATTGTTGGACTTTAA+AGG 0.153877 tig0011622:+120656 None:intergenic
ACATGCCTAATTAGGCATTT+AGG 0.248796 tig0011622:+119474 None:intergenic
ATTGGTGGTGGCTTGGGTTT+AGG 0.254441 tig0011622:+120536 None:intergenic
GGGGCCAATTGGTGGTGGCT+TGG 0.265521 tig0011622:+120529 None:intergenic
ATGTAAGTGCCGTACATTTA+AGG 0.267466 tig0011622:-119455 Msa1350590:three_prime_UTR
GGGCCAATTGGTGGTGGCTT+GGG 0.275299 tig0011622:+120530 None:intergenic
CAAGTAAACTTTAAGATTAT+GGG 0.291812 tig0011622:+119537 None:intergenic
CGGCACTTACATGCCTAATT+AGG 0.305440 tig0011622:+119466 None:intergenic
CAATATTGTTGGACTTTAAA+GGG 0.305571 tig0011622:+120657 None:intergenic
GTGGAGGCAGCAGGTGCAGC+CGG 0.318522 tig0011622:+120587 None:intergenic
CCTTTAAAGTCCAACAATAT+TGG 0.324065 tig0011622:-120656 Msa1350590:CDS
GTGAGTGAAGTGTGTTAGTT+TGG 0.328090 tig0011622:+120869 None:intergenic
ATCCTCCTAAATGCCTAATT+AGG 0.341375 tig0011622:-119479 Msa1350590:three_prime_UTR
CTTCTTCTAGACTTGTTGTC+AGG 0.342347 tig0011622:-120628 Msa1350590:CDS
CTTACTATCATAAGGATACT+TGG 0.368802 tig0011622:+119384 None:intergenic
GTCAATTTCAGTTGGTGCAT+TGG 0.372321 tig0011622:+119432 None:intergenic
CTCAACAGGTGAAGATTCTT+AGG 0.381804 tig0011622:-119964 Msa1350590:intron
TTATCCAACGGATTGGGATA+TGG 0.382801 tig0011622:-120976 Msa1350590:five_prime_UTR
TGTCAATCGTTTCCTCCACT+TGG 0.388848 tig0011622:+120936 None:intergenic
GAACCTCTCTTGGGGCCAAT+TGG 0.393160 tig0011622:+120518 None:intergenic
CTCTTGGGGCCAATTGGTGG+TGG 0.405813 tig0011622:+120524 None:intergenic
TGGCCCCAAGAGAGGTTCTA+AGG 0.412793 tig0011622:-120513 Msa1350590:intron
ACGACAGGGTAGCGAGTCTT+GGG 0.413817 tig0011622:+119784 None:intergenic
GATAATCTTAATGTGGCAAA+AGG 0.414539 tig0011622:+120814 None:intergenic
AATTACCTTAGAACCTCTCT+TGG 0.417720 tig0011622:+120508 None:intergenic
CATTTGAACTTACTATCATA+AGG 0.420678 tig0011622:+119376 None:intergenic
AGAAGAAGAACCAATATTGT+TGG 0.421736 tig0011622:+120646 None:intergenic
TGCAGCCGGGGCAGCCTCAT+CGG 0.425226 tig0011622:+120601 None:intergenic
ATCGACAAATAACTATGCTT+TGG 0.426234 tig0011622:-119728 Msa1350590:CDS
ATGTGGCAAAAGGACAAGAT+TGG 0.428850 tig0011622:+120824 None:intergenic
CCTTGATGAAGTTGTGTTGT+TGG 0.428946 tig0011622:+120697 None:intergenic
GGTGGCTTGGGTTTAGGAGT+AGG 0.430314 tig0011622:+120542 None:intergenic
CTTCTTATTGTAATCAAATG+AGG 0.430615 tig0011622:-119514 Msa1350590:three_prime_UTR
CCTCTCTTGGGGCCAATTGG+TGG 0.430678 tig0011622:+120521 None:intergenic
CATCTCATCCTCAGAAACTT+TGG 0.431422 tig0011622:+120913 None:intergenic
GCTGGAGCAGTGGAGGCAGC+AGG 0.442829 tig0011622:+120578 None:intergenic
TTCTGGAATCGAACCACGAC+AGG 0.446735 tig0011622:+119769 None:intergenic
ATTACCTTAGAACCTCTCTT+GGG 0.450802 tig0011622:+120509 None:intergenic
CACGACAGGGTAGCGAGTCT+TGG 0.452960 tig0011622:+119783 None:intergenic
GGCAACCGATGAGGCTGCCC+CGG 0.460044 tig0011622:-120606 Msa1350590:CDS
GCTGCCTCCACTGCTCCAGC+TGG 0.461366 tig0011622:-120575 Msa1350590:CDS
AAACCCAAGCCACCACCAAT+TGG 0.463084 tig0011622:-120533 Msa1350590:CDS
GGAGGCAGCAGGTGCAGCCG+GGG 0.477518 tig0011622:+120589 None:intergenic
GACAACATTATCCAACGGAT+TGG 0.490332 tig0011622:-120983 Msa1350590:five_prime_UTR
TTCTTCTAGACTTGTTGTCA+GGG 0.490708 tig0011622:-120627 Msa1350590:CDS
ATGGGCAACTGCACAATGAA+TGG 0.491942 tig0011622:+119555 None:intergenic
GTAGGAGCAGCATCACCAGC+TGG 0.494338 tig0011622:+120560 None:intergenic
TGGAGGCAGCAGGTGCAGCC+GGG 0.495138 tig0011622:+120588 None:intergenic
ACAACATTATCCAACGGATT+GGG 0.496749 tig0011622:-120982 Msa1350590:five_prime_UTR
AGCATGGCATCAGCAGCTAC+TGG 0.498675 tig0011622:-120746 Msa1350590:CDS
ATTCTTAGTTAGAGTTCGAT+AGG 0.501063 tig0011622:-119278 Msa1350590:three_prime_UTR
ATCACCAGCTGGAGCAGTGG+AGG 0.508802 tig0011622:+120571 None:intergenic
ATATTGAAGTTACTAGCCTA+AGG 0.519270 tig0011622:-119645 Msa1350590:three_prime_UTR
AGCATCACCAGCTGGAGCAG+TGG 0.519718 tig0011622:+120568 None:intergenic
TCCTACTGGTACAAAGGCAC+TGG 0.520039 tig0011622:-119935 Msa1350590:CDS
GTGCATTGGCCTTAAATGTA+CGG 0.523721 tig0011622:+119446 None:intergenic
ATAGTTATTTGTCGATACAT+TGG 0.524557 tig0011622:+119735 None:intergenic
TTACTATCATAAGGATACTT+GGG 0.529141 tig0011622:+119385 None:intergenic
GATTGGATTGAGGTATGAGA+GGG 0.538866 tig0011622:+120841 None:intergenic
TTCTTAGGAAGGAATCCTAC+TGG 0.542855 tig0011622:-119949 Msa1350590:CDS
GTCAATCGTTTCCTCCACTT+GGG 0.546716 tig0011622:+120937 None:intergenic
AGATTGGATTGAGGTATGAG+AGG 0.549056 tig0011622:+120840 None:intergenic
TGCCTAATTAGGCATTTAGG+AGG 0.552114 tig0011622:+119477 None:intergenic
TAAGTTCAAATGAGTGACAT+TGG 0.562913 tig0011622:-119365 Msa1350590:three_prime_UTR
TGCACCATATCCCAATCCGT+TGG 0.576397 tig0011622:+120972 None:intergenic
ACAGGTGAAGATTCTTAGGA+AGG 0.576965 tig0011622:-119960 Msa1350590:intron
AAGGAATCCTACTGGTACAA+AGG 0.577304 tig0011622:-119941 Msa1350590:CDS
CCACCAATTGGCCCCAAGAG+AGG 0.582857 tig0011622:-120521 Msa1350590:CDS
GATTGACACCAAAGTTTCTG+AGG 0.592055 tig0011622:-120921 Msa1350590:five_prime_UTR
CTTAGTTAGAGTTCGATAGG+AGG 0.592178 tig0011622:-119275 Msa1350590:three_prime_UTR
CAAGACTCGCTACCCTGTCG+TGG 0.613483 tig0011622:-119782 Msa1350590:CDS
CCAACAACACAACTTCATCA+AGG 0.613961 tig0011622:-120697 Msa1350590:CDS
AGTCATGGCTAGCAGCAGCA+TGG 0.629935 tig0011622:-120762 Msa1350590:exon
TGTTGTCAGGGCAACCGATG+AGG 0.640147 tig0011622:-120615 Msa1350590:CDS
CTTTAAAGGGAACATCAACA+TGG 0.644075 tig0011622:+120670 None:intergenic
AAAAGGACAAGATTGGATTG+AGG 0.645570 tig0011622:+120831 None:intergenic
TTACCTTAGAACCTCTCTTG+GGG 0.647944 tig0011622:+120510 None:intergenic
CACAAGTGTCATCACCCAAG+TGG 0.648059 tig0011622:-120951 Msa1350590:five_prime_UTR
CACAGAAAGAAAGATAGTCA+TGG 0.651778 tig0011622:-120777 Msa1350590:exon
AAGTGTCATCACCCAAGTGG+AGG 0.652030 tig0011622:-120948 Msa1350590:five_prime_UTR
TCCAGTGCCTTTGTACCAGT+AGG 0.656987 tig0011622:+119934 None:intergenic
GTAGTGACAACATTATCCAA+CGG 0.688517 tig0011622:-120988 Msa1350590:five_prime_UTR
CGACAGGGTAGCGAGTCTTG+GGG 0.696532 tig0011622:+119785 None:intergenic
TCTGGAATCGAACCACGACA+GGG 0.707301 tig0011622:+119770 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTAGTTTGAATTTACTTA+TGG - tig0011622:119839-119858 Msa1350590:intron 20.0%
!!! AAGATATATTAGAGTGTTTT+TGG - tig0011622:119955-119974 Msa1350590:CDS 20.0%
!! ATTATGAGGAAAAAACTTAA+AGG + tig0011622:120381-120400 None:intergenic 20.0%
!!! CAAGTAAACTTTAAGATTAT+GGG + tig0011622:120702-120721 None:intergenic 20.0%
!!! AAGTTTTCAGTTTCATTTTT+AGG + tig0011622:120829-120848 None:intergenic 20.0%
!!! GTTTAGTTTGAATTTACTTA+TGG - tig0011622:119839-119858 Msa1350590:intron 20.0%
!!! AAGATATATTAGAGTGTTTT+TGG - tig0011622:119955-119974 Msa1350590:CDS 20.0%
!! ATTATGAGGAAAAAACTTAA+AGG + tig0011622:120381-120400 None:intergenic 20.0%
!!! CAAGTAAACTTTAAGATTAT+GGG + tig0011622:120702-120721 None:intergenic 20.0%
!!! AAGTTTTCAGTTTCATTTTT+AGG + tig0011622:120829-120848 None:intergenic 20.0%
!!! GTTAGTTTGGTTGTTTATTT+TGG + tig0011622:119357-119376 None:intergenic 25.0%
!!! CTCTTTTGATAATCTTAATG+TGG + tig0011622:119432-119451 None:intergenic 25.0%
! CAATATTGTTGGACTTTAAA+GGG + tig0011622:119582-119601 None:intergenic 25.0%
! TTCTTGTTGCAATTATACAT+TGG - tig0011622:119817-119836 Msa1350590:intron 25.0%
!!! AAGTGAGTTTTAGTTGAAAT+AGG + tig0011622:119999-120018 None:intergenic 25.0%
! TATTTCAACTAAAACTCACT+TGG - tig0011622:119998-120017 Msa1350590:intron 25.0%
! ATTTCAACTAAAACTCACTT+GGG - tig0011622:119999-120018 Msa1350590:intron 25.0%
! TAGCTAAAGATAGTTGAAAT+AGG + tig0011622:120139-120158 None:intergenic 25.0%
! ATAGTTATTTGTCGATACAT+TGG + tig0011622:120504-120523 None:intergenic 25.0%
!! TTTTGACATGAAAAAACCTT+AGG + tig0011622:120610-120629 None:intergenic 25.0%
!!! GCAAGTAAACTTTAAGATTA+TGG + tig0011622:120703-120722 None:intergenic 25.0%
! CTTCTTATTGTAATCAAATG+AGG - tig0011622:120722-120741 Msa1350590:CDS 25.0%
!!! ATTTTTAGGTCAATTTCAGT+TGG + tig0011622:120815-120834 None:intergenic 25.0%
! TTACTATCATAAGGATACTT+GGG + tig0011622:120854-120873 None:intergenic 25.0%
! CATTTGAACTTACTATCATA+AGG + tig0011622:120863-120882 None:intergenic 25.0%
!!! GTTAGTTTGGTTGTTTATTT+TGG + tig0011622:119357-119376 None:intergenic 25.0%
!!! CTCTTTTGATAATCTTAATG+TGG + tig0011622:119432-119451 None:intergenic 25.0%
! CAATATTGTTGGACTTTAAA+GGG + tig0011622:119582-119601 None:intergenic 25.0%
! TTCTTGTTGCAATTATACAT+TGG - tig0011622:119817-119836 Msa1350590:intron 25.0%
!!! AAGTGAGTTTTAGTTGAAAT+AGG + tig0011622:119999-120018 None:intergenic 25.0%
! TATTTCAACTAAAACTCACT+TGG - tig0011622:119998-120017 Msa1350590:intron 25.0%
! ATTTCAACTAAAACTCACTT+GGG - tig0011622:119999-120018 Msa1350590:intron 25.0%
! TAGCTAAAGATAGTTGAAAT+AGG + tig0011622:120139-120158 None:intergenic 25.0%
! ATAGTTATTTGTCGATACAT+TGG + tig0011622:120504-120523 None:intergenic 25.0%
!! TTTTGACATGAAAAAACCTT+AGG + tig0011622:120610-120629 None:intergenic 25.0%
!!! GCAAGTAAACTTTAAGATTA+TGG + tig0011622:120703-120722 None:intergenic 25.0%
! CTTCTTATTGTAATCAAATG+AGG - tig0011622:120722-120741 Msa1350590:CDS 25.0%
!!! ATTTTTAGGTCAATTTCAGT+TGG + tig0011622:120815-120834 None:intergenic 25.0%
! TTACTATCATAAGGATACTT+GGG + tig0011622:120854-120873 None:intergenic 25.0%
! CATTTGAACTTACTATCATA+AGG + tig0011622:120863-120882 None:intergenic 25.0%
!!! AGTTTGGTTGTTTATTTTGG+AGG + tig0011622:119354-119373 None:intergenic 30.0%
GATAATCTTAATGTGGCAAA+AGG + tig0011622:119425-119444 None:intergenic 30.0%
CCAATATTGTTGGACTTTAA+AGG + tig0011622:119583-119602 None:intergenic 30.0%
!! CCTTTAAAGTCCAACAATAT+TGG - tig0011622:119580-119599 Msa1350590:three_prime_UTR 30.0%
AGAAGAAGAACCAATATTGT+TGG + tig0011622:119593-119612 None:intergenic 30.0%
TGATACTACTTATGACTTTG+TGG - tig0011622:119913-119932 Msa1350590:CDS 30.0%
! TTGGTTGAAATTTGAGTTTG+AGG + tig0011622:120357-120376 None:intergenic 30.0%
GAGGAAAAAACTTAAAGGTT+TGG + tig0011622:120376-120395 None:intergenic 30.0%
!!! GTTTTTTCCTCATAATCCAT+TGG - tig0011622:120385-120404 Msa1350590:intron 30.0%
ATCGACAAATAACTATGCTT+TGG - tig0011622:120508-120527 Msa1350590:intron 30.0%
! ATATTGAAGTTACTAGCCTA+AGG - tig0011622:120591-120610 Msa1350590:CDS 30.0%
CTTACTATCATAAGGATACT+TGG + tig0011622:120855-120874 None:intergenic 30.0%
TAAGTTCAAATGAGTGACAT+TGG - tig0011622:120871-120890 Msa1350590:five_prime_UTR 30.0%
!!! ACTACCTTGCAATTTTTTTG+TGG - tig0011622:120928-120947 Msa1350590:five_prime_UTR 30.0%
!!! CTACCTTGCAATTTTTTTGT+GGG - tig0011622:120929-120948 Msa1350590:five_prime_UTR 30.0%
ATTCTTAGTTAGAGTTCGAT+AGG - tig0011622:120958-120977 Msa1350590:five_prime_UTR 30.0%
!!! AGTTTGGTTGTTTATTTTGG+AGG + tig0011622:119354-119373 None:intergenic 30.0%
GATAATCTTAATGTGGCAAA+AGG + tig0011622:119425-119444 None:intergenic 30.0%
CCAATATTGTTGGACTTTAA+AGG + tig0011622:119583-119602 None:intergenic 30.0%
!! CCTTTAAAGTCCAACAATAT+TGG - tig0011622:119580-119599 Msa1350590:three_prime_UTR 30.0%
AGAAGAAGAACCAATATTGT+TGG + tig0011622:119593-119612 None:intergenic 30.0%
TGATACTACTTATGACTTTG+TGG - tig0011622:119913-119932 Msa1350590:CDS 30.0%
! TTGGTTGAAATTTGAGTTTG+AGG + tig0011622:120357-120376 None:intergenic 30.0%
GAGGAAAAAACTTAAAGGTT+TGG + tig0011622:120376-120395 None:intergenic 30.0%
!!! GTTTTTTCCTCATAATCCAT+TGG - tig0011622:120385-120404 Msa1350590:intron 30.0%
ATCGACAAATAACTATGCTT+TGG - tig0011622:120508-120527 Msa1350590:intron 30.0%
! ATATTGAAGTTACTAGCCTA+AGG - tig0011622:120591-120610 Msa1350590:CDS 30.0%
CTTACTATCATAAGGATACT+TGG + tig0011622:120855-120874 None:intergenic 30.0%
TAAGTTCAAATGAGTGACAT+TGG - tig0011622:120871-120890 Msa1350590:five_prime_UTR 30.0%
!!! ACTACCTTGCAATTTTTTTG+TGG - tig0011622:120928-120947 Msa1350590:five_prime_UTR 30.0%
!!! CTACCTTGCAATTTTTTTGT+GGG - tig0011622:120929-120948 Msa1350590:five_prime_UTR 30.0%
ATTCTTAGTTAGAGTTCGAT+AGG - tig0011622:120958-120977 Msa1350590:five_prime_UTR 30.0%
GTAGTGACAACATTATCCAA+CGG - tig0011622:119248-119267 Msa1350590:three_prime_UTR 35.0%
! ACAACATTATCCAACGGATT+GGG - tig0011622:119254-119273 Msa1350590:three_prime_UTR 35.0%
AAAAGGACAAGATTGGATTG+AGG + tig0011622:119408-119427 None:intergenic 35.0%
CACAGAAAGAAAGATAGTCA+TGG - tig0011622:119459-119478 Msa1350590:three_prime_UTR 35.0%
! CTTTAAAGGGAACATCAACA+TGG + tig0011622:119569-119588 None:intergenic 35.0%
!! TTCTTCTAGACTTGTTGTCA+GGG - tig0011622:119609-119628 Msa1350590:three_prime_UTR 35.0%
ATTACCTTAGAACCTCTCTT+GGG + tig0011622:119730-119749 None:intergenic 35.0%
AATTACCTTAGAACCTCTCT+TGG + tig0011622:119731-119750 None:intergenic 35.0%
AATCTCCGTAGTGTCAATTT+AGG - tig0011622:120083-120102 Msa1350590:intron 35.0%
! CTATCTTTAGCTAGTCTACA+CGG - tig0011622:120146-120165 Msa1350590:intron 35.0%
GATATTTCTTTGCACTCAAC+AGG - tig0011622:120258-120277 Msa1350590:intron 35.0%
!! TGAGTTACCAATGGATTATG+AGG + tig0011622:120395-120414 None:intergenic 35.0%
! GTAACTCAGCTCTTGTTTAA+CGG - tig0011622:120407-120426 Msa1350590:intron 35.0%
ATCCTCCTAAATGCCTAATT+AGG - tig0011622:120757-120776 Msa1350590:CDS 35.0%
ACATGCCTAATTAGGCATTT+AGG + tig0011622:120765-120784 None:intergenic 35.0%
! ATGTAAGTGCCGTACATTTA+AGG - tig0011622:120781-120800 Msa1350590:five_prime_UTR 35.0%
TCACCCACAAAAAAATTGCA+AGG + tig0011622:120935-120954 None:intergenic 35.0%
GTAGTGACAACATTATCCAA+CGG - tig0011622:119248-119267 Msa1350590:three_prime_UTR 35.0%
! ACAACATTATCCAACGGATT+GGG - tig0011622:119254-119273 Msa1350590:three_prime_UTR 35.0%
AAAAGGACAAGATTGGATTG+AGG + tig0011622:119408-119427 None:intergenic 35.0%
CACAGAAAGAAAGATAGTCA+TGG - tig0011622:119459-119478 Msa1350590:three_prime_UTR 35.0%
! CTTTAAAGGGAACATCAACA+TGG + tig0011622:119569-119588 None:intergenic 35.0%
!! TTCTTCTAGACTTGTTGTCA+GGG - tig0011622:119609-119628 Msa1350590:three_prime_UTR 35.0%
ATTACCTTAGAACCTCTCTT+GGG + tig0011622:119730-119749 None:intergenic 35.0%
AATTACCTTAGAACCTCTCT+TGG + tig0011622:119731-119750 None:intergenic 35.0%
AATCTCCGTAGTGTCAATTT+AGG - tig0011622:120083-120102 Msa1350590:intron 35.0%
! CTATCTTTAGCTAGTCTACA+CGG - tig0011622:120146-120165 Msa1350590:intron 35.0%
GATATTTCTTTGCACTCAAC+AGG - tig0011622:120258-120277 Msa1350590:intron 35.0%
!! TGAGTTACCAATGGATTATG+AGG + tig0011622:120395-120414 None:intergenic 35.0%
! GTAACTCAGCTCTTGTTTAA+CGG - tig0011622:120407-120426 Msa1350590:intron 35.0%
ATCCTCCTAAATGCCTAATT+AGG - tig0011622:120757-120776 Msa1350590:CDS 35.0%
ACATGCCTAATTAGGCATTT+AGG + tig0011622:120765-120784 None:intergenic 35.0%
! ATGTAAGTGCCGTACATTTA+AGG - tig0011622:120781-120800 Msa1350590:five_prime_UTR 35.0%
TCACCCACAAAAAAATTGCA+AGG + tig0011622:120935-120954 None:intergenic 35.0%
GACAACATTATCCAACGGAT+TGG - tig0011622:119253-119272 Msa1350590:three_prime_UTR 40.0%
!! TTATCCAACGGATTGGGATA+TGG - tig0011622:119260-119279 Msa1350590:three_prime_UTR 40.0%
GATTGACACCAAAGTTTCTG+AGG - tig0011622:119315-119334 Msa1350590:three_prime_UTR 40.0%
CATCTCATCCTCAGAAACTT+TGG + tig0011622:119326-119345 None:intergenic 40.0%
GTGAGTGAAGTGTGTTAGTT+TGG + tig0011622:119370-119389 None:intergenic 40.0%
GATTGGATTGAGGTATGAGA+GGG + tig0011622:119398-119417 None:intergenic 40.0%
AGATTGGATTGAGGTATGAG+AGG + tig0011622:119399-119418 None:intergenic 40.0%
ATGTGGCAAAAGGACAAGAT+TGG + tig0011622:119415-119434 None:intergenic 40.0%
CCTTGATGAAGTTGTGTTGT+TGG + tig0011622:119542-119561 None:intergenic 40.0%
CCAACAACACAACTTCATCA+AGG - tig0011622:119539-119558 Msa1350590:three_prime_UTR 40.0%
!! CTTCTTCTAGACTTGTTGTC+AGG - tig0011622:119608-119627 Msa1350590:three_prime_UTR 40.0%
TTACCTTAGAACCTCTCTTG+GGG + tig0011622:119729-119748 None:intergenic 40.0%
CAACTAAAACTCACTTGGGT+TGG - tig0011622:120003-120022 Msa1350590:intron 40.0%
AGGTCTCAAGTCAATATCAC+CGG + tig0011622:120030-120049 None:intergenic 40.0%
GTCCACCTAAATTGACACTA+CGG + tig0011622:120091-120110 None:intergenic 40.0%
!! TCGGTGATTAGTCTCATAAC+CGG - tig0011622:120174-120193 Msa1350590:intron 40.0%
ATAACCGGTCTAAATTGACG+AGG - tig0011622:120189-120208 Msa1350590:intron 40.0%
TAACCGGTCTAAATTGACGA+GGG - tig0011622:120190-120209 Msa1350590:intron 40.0%
CTCAACAGGTGAAGATTCTT+AGG - tig0011622:120272-120291 Msa1350590:intron 40.0%
ACAGGTGAAGATTCTTAGGA+AGG - tig0011622:120276-120295 Msa1350590:intron 40.0%
TTCTTAGGAAGGAATCCTAC+TGG - tig0011622:120287-120306 Msa1350590:intron 40.0%
AAGGAATCCTACTGGTACAA+AGG - tig0011622:120295-120314 Msa1350590:intron 40.0%
AACAAGAGCTGAGTTACCAA+TGG + tig0011622:120404-120423 None:intergenic 40.0%
TGCCTAATTAGGCATTTAGG+AGG + tig0011622:120762-120781 None:intergenic 40.0%
!! GTGCATTGGCCTTAAATGTA+CGG + tig0011622:120793-120812 None:intergenic 40.0%
! GTCAATTTCAGTTGGTGCAT+TGG + tig0011622:120807-120826 None:intergenic 40.0%
CTTAGTTAGAGTTCGATAGG+AGG - tig0011622:120961-120980 Msa1350590:five_prime_UTR 40.0%
GACAACATTATCCAACGGAT+TGG - tig0011622:119253-119272 Msa1350590:three_prime_UTR 40.0%
!! TTATCCAACGGATTGGGATA+TGG - tig0011622:119260-119279 Msa1350590:three_prime_UTR 40.0%
GATTGACACCAAAGTTTCTG+AGG - tig0011622:119315-119334 Msa1350590:three_prime_UTR 40.0%
CATCTCATCCTCAGAAACTT+TGG + tig0011622:119326-119345 None:intergenic 40.0%
GTGAGTGAAGTGTGTTAGTT+TGG + tig0011622:119370-119389 None:intergenic 40.0%
GATTGGATTGAGGTATGAGA+GGG + tig0011622:119398-119417 None:intergenic 40.0%
AGATTGGATTGAGGTATGAG+AGG + tig0011622:119399-119418 None:intergenic 40.0%
ATGTGGCAAAAGGACAAGAT+TGG + tig0011622:119415-119434 None:intergenic 40.0%
CCTTGATGAAGTTGTGTTGT+TGG + tig0011622:119542-119561 None:intergenic 40.0%
CCAACAACACAACTTCATCA+AGG - tig0011622:119539-119558 Msa1350590:three_prime_UTR 40.0%
!! CTTCTTCTAGACTTGTTGTC+AGG - tig0011622:119608-119627 Msa1350590:three_prime_UTR 40.0%
TTACCTTAGAACCTCTCTTG+GGG + tig0011622:119729-119748 None:intergenic 40.0%
CAACTAAAACTCACTTGGGT+TGG - tig0011622:120003-120022 Msa1350590:intron 40.0%
AGGTCTCAAGTCAATATCAC+CGG + tig0011622:120030-120049 None:intergenic 40.0%
GTCCACCTAAATTGACACTA+CGG + tig0011622:120091-120110 None:intergenic 40.0%
!! TCGGTGATTAGTCTCATAAC+CGG - tig0011622:120174-120193 Msa1350590:intron 40.0%
ATAACCGGTCTAAATTGACG+AGG - tig0011622:120189-120208 Msa1350590:intron 40.0%
TAACCGGTCTAAATTGACGA+GGG - tig0011622:120190-120209 Msa1350590:intron 40.0%
CTCAACAGGTGAAGATTCTT+AGG - tig0011622:120272-120291 Msa1350590:intron 40.0%
ACAGGTGAAGATTCTTAGGA+AGG - tig0011622:120276-120295 Msa1350590:intron 40.0%
TTCTTAGGAAGGAATCCTAC+TGG - tig0011622:120287-120306 Msa1350590:intron 40.0%
AAGGAATCCTACTGGTACAA+AGG - tig0011622:120295-120314 Msa1350590:intron 40.0%
AACAAGAGCTGAGTTACCAA+TGG + tig0011622:120404-120423 None:intergenic 40.0%
TGCCTAATTAGGCATTTAGG+AGG + tig0011622:120762-120781 None:intergenic 40.0%
!! GTGCATTGGCCTTAAATGTA+CGG + tig0011622:120793-120812 None:intergenic 40.0%
! GTCAATTTCAGTTGGTGCAT+TGG + tig0011622:120807-120826 None:intergenic 40.0%
CTTAGTTAGAGTTCGATAGG+AGG - tig0011622:120961-120980 Msa1350590:five_prime_UTR 40.0%
GTCAATCGTTTCCTCCACTT+GGG + tig0011622:119302-119321 None:intergenic 45.0%
TGTCAATCGTTTCCTCCACT+TGG + tig0011622:119303-119322 None:intergenic 45.0%
GGTCTCAAGTCAATATCACC+GGG + tig0011622:120029-120048 None:intergenic 45.0%
CTCCGTAGTGTCAATTTAGG+TGG - tig0011622:120086-120105 Msa1350590:intron 45.0%
! GCTAGTCTACACGGTCAAAT+CGG - tig0011622:120155-120174 Msa1350590:intron 45.0%
TCACCCTCGTCAATTTAGAC+CGG + tig0011622:120196-120215 None:intergenic 45.0%
! CGGATTTCTCTTTGTTGTGC+AGG - tig0011622:120427-120446 Msa1350590:intron 45.0%
CATTGGCGTAGTTCACTTTC+TGG + tig0011622:120487-120506 None:intergenic 45.0%
ATGGGCAACTGCACAATGAA+TGG + tig0011622:120684-120703 None:intergenic 45.0%
CGGCACTTACATGCCTAATT+AGG + tig0011622:120773-120792 None:intergenic 45.0%
GTCAATCGTTTCCTCCACTT+GGG + tig0011622:119302-119321 None:intergenic 45.0%
TGTCAATCGTTTCCTCCACT+TGG + tig0011622:119303-119322 None:intergenic 45.0%
GGTCTCAAGTCAATATCACC+GGG + tig0011622:120029-120048 None:intergenic 45.0%
CTCCGTAGTGTCAATTTAGG+TGG - tig0011622:120086-120105 Msa1350590:intron 45.0%
! GCTAGTCTACACGGTCAAAT+CGG - tig0011622:120155-120174 Msa1350590:intron 45.0%
TCACCCTCGTCAATTTAGAC+CGG + tig0011622:120196-120215 None:intergenic 45.0%
! CGGATTTCTCTTTGTTGTGC+AGG - tig0011622:120427-120446 Msa1350590:intron 45.0%
CATTGGCGTAGTTCACTTTC+TGG + tig0011622:120487-120506 None:intergenic 45.0%
ATGGGCAACTGCACAATGAA+TGG + tig0011622:120684-120703 None:intergenic 45.0%
CGGCACTTACATGCCTAATT+AGG + tig0011622:120773-120792 None:intergenic 45.0%
TGCACCATATCCCAATCCGT+TGG + tig0011622:119267-119286 None:intergenic 50.0%
CACAAGTGTCATCACCCAAG+TGG - tig0011622:119285-119304 Msa1350590:three_prime_UTR 50.0%
AAGTGTCATCACCCAAGTGG+AGG - tig0011622:119288-119307 Msa1350590:three_prime_UTR 50.0%
!! ATTGGTGGTGGCTTGGGTTT+AGG + tig0011622:119703-119722 None:intergenic 50.0%
AAACCCAAGCCACCACCAAT+TGG - tig0011622:119703-119722 Msa1350590:exon 50.0%
!! AAAACTCACTTGGGTTGGCC+CGG - tig0011622:120008-120027 Msa1350590:intron 50.0%
! TTGAAGAGGAGCACACTCTC+AGG + tig0011622:120050-120069 None:intergenic 50.0%
! TGAGAGTGTGCTCCTCTTCA+AGG - tig0011622:120049-120068 Msa1350590:intron 50.0%
TCGAACCTGAGACCTTGAAG+AGG + tig0011622:120064-120083 None:intergenic 50.0%
! TCCTACTGGTACAAAGGCAC+TGG - tig0011622:120301-120320 Msa1350590:intron 50.0%
TCCAGTGCCTTTGTACCAGT+AGG + tig0011622:120305-120324 None:intergenic 50.0%
! TCTGGAATCGAACCACGACA+GGG + tig0011622:120469-120488 None:intergenic 50.0%
!! TTCTGGAATCGAACCACGAC+AGG + tig0011622:120470-120489 None:intergenic 50.0%
TGCACCATATCCCAATCCGT+TGG + tig0011622:119267-119286 None:intergenic 50.0%
CACAAGTGTCATCACCCAAG+TGG - tig0011622:119285-119304 Msa1350590:three_prime_UTR 50.0%
AAGTGTCATCACCCAAGTGG+AGG - tig0011622:119288-119307 Msa1350590:three_prime_UTR 50.0%
!! ATTGGTGGTGGCTTGGGTTT+AGG + tig0011622:119703-119722 None:intergenic 50.0%
AAACCCAAGCCACCACCAAT+TGG - tig0011622:119703-119722 Msa1350590:exon 50.0%
!! AAAACTCACTTGGGTTGGCC+CGG - tig0011622:120008-120027 Msa1350590:intron 50.0%
! TTGAAGAGGAGCACACTCTC+AGG + tig0011622:120050-120069 None:intergenic 50.0%
! TGAGAGTGTGCTCCTCTTCA+AGG - tig0011622:120049-120068 Msa1350590:intron 50.0%
TCGAACCTGAGACCTTGAAG+AGG + tig0011622:120064-120083 None:intergenic 50.0%
! TCCTACTGGTACAAAGGCAC+TGG - tig0011622:120301-120320 Msa1350590:intron 50.0%
TCCAGTGCCTTTGTACCAGT+AGG + tig0011622:120305-120324 None:intergenic 50.0%
! TCTGGAATCGAACCACGACA+GGG + tig0011622:120469-120488 None:intergenic 50.0%
!! TTCTGGAATCGAACCACGAC+AGG + tig0011622:120470-120489 None:intergenic 50.0%
AGTCATGGCTAGCAGCAGCA+TGG - tig0011622:119474-119493 Msa1350590:three_prime_UTR 55.0%
AGCATGGCATCAGCAGCTAC+TGG - tig0011622:119490-119509 Msa1350590:three_prime_UTR 55.0%
TGTTGTCAGGGCAACCGATG+AGG - tig0011622:119621-119640 Msa1350590:three_prime_UTR 55.0%
! GGTGGCTTGGGTTTAGGAGT+AGG + tig0011622:119697-119716 None:intergenic 55.0%
GAACCTCTCTTGGGGCCAAT+TGG + tig0011622:119721-119740 None:intergenic 55.0%
TGGCCCCAAGAGAGGTTCTA+AGG - tig0011622:119723-119742 Msa1350590:CDS 55.0%
GTGCTCCTCTTCAAGGTCTC+AGG - tig0011622:120056-120075 Msa1350590:intron 55.0%
ACGACAGGGTAGCGAGTCTT+GGG + tig0011622:120455-120474 None:intergenic 55.0%
AGTCATGGCTAGCAGCAGCA+TGG - tig0011622:119474-119493 Msa1350590:three_prime_UTR 55.0%
AGCATGGCATCAGCAGCTAC+TGG - tig0011622:119490-119509 Msa1350590:three_prime_UTR 55.0%
TGTTGTCAGGGCAACCGATG+AGG - tig0011622:119621-119640 Msa1350590:three_prime_UTR 55.0%
! GGTGGCTTGGGTTTAGGAGT+AGG + tig0011622:119697-119716 None:intergenic 55.0%
GAACCTCTCTTGGGGCCAAT+TGG + tig0011622:119721-119740 None:intergenic 55.0%
TGGCCCCAAGAGAGGTTCTA+AGG - tig0011622:119723-119742 Msa1350590:CDS 55.0%
GTGCTCCTCTTCAAGGTCTC+AGG - tig0011622:120056-120075 Msa1350590:intron 55.0%
ACGACAGGGTAGCGAGTCTT+GGG + tig0011622:120455-120474 None:intergenic 55.0%
ATCACCAGCTGGAGCAGTGG+AGG + tig0011622:119668-119687 None:intergenic 60.0%
AGCATCACCAGCTGGAGCAG+TGG + tig0011622:119671-119690 None:intergenic 60.0%
GTAGGAGCAGCATCACCAGC+TGG + tig0011622:119679-119698 None:intergenic 60.0%
!! GGGCCAATTGGTGGTGGCTT+GGG + tig0011622:119709-119728 None:intergenic 60.0%
CTCTTGGGGCCAATTGGTGG+TGG + tig0011622:119715-119734 None:intergenic 60.0%
CCTCTCTTGGGGCCAATTGG+TGG + tig0011622:119718-119737 None:intergenic 60.0%
CCACCAATTGGCCCCAAGAG+AGG - tig0011622:119715-119734 Msa1350590:CDS 60.0%
CGACAGGGTAGCGAGTCTTG+GGG + tig0011622:120454-120473 None:intergenic 60.0%
CACGACAGGGTAGCGAGTCT+TGG + tig0011622:120456-120475 None:intergenic 60.0%
CAAGACTCGCTACCCTGTCG+TGG - tig0011622:120454-120473 Msa1350590:intron 60.0%
ATCACCAGCTGGAGCAGTGG+AGG + tig0011622:119668-119687 None:intergenic 60.0%
AGCATCACCAGCTGGAGCAG+TGG + tig0011622:119671-119690 None:intergenic 60.0%
GTAGGAGCAGCATCACCAGC+TGG + tig0011622:119679-119698 None:intergenic 60.0%
!! GGGCCAATTGGTGGTGGCTT+GGG + tig0011622:119709-119728 None:intergenic 60.0%
CTCTTGGGGCCAATTGGTGG+TGG + tig0011622:119715-119734 None:intergenic 60.0%
CCTCTCTTGGGGCCAATTGG+TGG + tig0011622:119718-119737 None:intergenic 60.0%
CCACCAATTGGCCCCAAGAG+AGG - tig0011622:119715-119734 Msa1350590:CDS 60.0%
CGACAGGGTAGCGAGTCTTG+GGG + tig0011622:120454-120473 None:intergenic 60.0%
CACGACAGGGTAGCGAGTCT+TGG + tig0011622:120456-120475 None:intergenic 60.0%
CAAGACTCGCTACCCTGTCG+TGG - tig0011622:120454-120473 Msa1350590:intron 60.0%
!! GGGGCCAATTGGTGGTGGCT+TGG + tig0011622:119710-119729 None:intergenic 65.0%
!! GGGGCCAATTGGTGGTGGCT+TGG + tig0011622:119710-119729 None:intergenic 65.0%
GGCAACCGATGAGGCTGCCC+CGG - tig0011622:119630-119649 Msa1350590:three_prime_UTR 70.0%
TGCAGCCGGGGCAGCCTCAT+CGG + tig0011622:119638-119657 None:intergenic 70.0%
TGGAGGCAGCAGGTGCAGCC+GGG + tig0011622:119651-119670 None:intergenic 70.0%
GTGGAGGCAGCAGGTGCAGC+CGG + tig0011622:119652-119671 None:intergenic 70.0%
GCTGGAGCAGTGGAGGCAGC+AGG + tig0011622:119661-119680 None:intergenic 70.0%
GCTGCCTCCACTGCTCCAGC+TGG - tig0011622:119661-119680 Msa1350590:three_prime_UTR 70.0%
GGCAACCGATGAGGCTGCCC+CGG - tig0011622:119630-119649 Msa1350590:three_prime_UTR 70.0%
TGCAGCCGGGGCAGCCTCAT+CGG + tig0011622:119638-119657 None:intergenic 70.0%
TGGAGGCAGCAGGTGCAGCC+GGG + tig0011622:119651-119670 None:intergenic 70.0%
GTGGAGGCAGCAGGTGCAGC+CGG + tig0011622:119652-119671 None:intergenic 70.0%
GCTGGAGCAGTGGAGGCAGC+AGG + tig0011622:119661-119680 None:intergenic 70.0%
GCTGCCTCCACTGCTCCAGC+TGG - tig0011622:119661-119680 Msa1350590:three_prime_UTR 70.0%
GGAGGCAGCAGGTGCAGCCG+GGG + tig0011622:119650-119669 None:intergenic 75.0%
GGAGGCAGCAGGTGCAGCCG+GGG + tig0011622:119650-119669 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0011622 gene 119208 121050 119208 ID=Msa1350590;Name=Msa1350590
tig0011622 mRNA 119208 121050 119208 ID=Msa1350590-mRNA-1;Parent=Msa1350590;Name=Msa1350590-mRNA-1;_AED=0.01;_eAED=0.01;_QI=270|1|1|1|1|1|3|497|145
tig0011622 exon 119208 119809 119208 ID=Msa1350590-mRNA-1:exon:7468;Parent=Msa1350590-mRNA-1
tig0011622 exon 119913 119978 119913 ID=Msa1350590-mRNA-1:exon:7467;Parent=Msa1350590-mRNA-1
tig0011622 exon 120514 121050 120514 ID=Msa1350590-mRNA-1:exon:7466;Parent=Msa1350590-mRNA-1
tig0011622 five_prime_UTR 120781 121050 120781 ID=Msa1350590-mRNA-1:five_prime_utr;Parent=Msa1350590-mRNA-1
tig0011622 CDS 120514 120780 120514 ID=Msa1350590-mRNA-1:cds;Parent=Msa1350590-mRNA-1
tig0011622 CDS 119913 119978 119913 ID=Msa1350590-mRNA-1:cds;Parent=Msa1350590-mRNA-1
tig0011622 CDS 119705 119809 119705 ID=Msa1350590-mRNA-1:cds;Parent=Msa1350590-mRNA-1
tig0011622 three_prime_UTR 119208 119704 119208 ID=Msa1350590-mRNA-1:three_prime_utr;Parent=Msa1350590-mRNA-1
Gene Sequence

>Msa1350590

ATGGCTAGCAGCAGCATGGCATCAGCAGCTACTGGATTTTTGTTGTCACTTAATGTTGCTTCCAACAACACAACTTCATCAAGGAGTACCATGTTGATGTTCCCTTTAAAGTCCAACAATATTGGTTCTTCTTCTTCTAGACTTGTTGTCAGGGCAACCGATGAGGCTGCCCCGGCTGCACCTGCTGCCTCCACTGCTCCAGCTGGTGATGCTGCTCCTACTCCTAAACCCAAGCCACCACCAATTGGCCCCAAGAGAGGTTCTAAGGTGAAGATTCTTAGGAAGGAATCCTACTGGTACAAAGGCACTGGATCAGTTGTTGCTGTTGATCAAGACCCCAAGACTCGCTACCCTGTCGTGGTTCGATTCCAGAAAGTGAACTACGCCAATGTATCGACAAATAACTATGCTTTGGATGAGATTGAAGAAGTTGTTTAA

Protein sequence

>Msa1350590

MASSSMASAATGFLLSLNVASNNTTSSRSTMLMFPLKSNNIGSSSSRLVVRATDEAAPAAPAASTAPAGDAAPTPKPKPPPIGPKRGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRFQKVNYANVSTNNYALDEIEEVV*