AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0139910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139910 MtrunA17_Chr7g0214741 99.367 158 1 0 1 158 286 443 1.43e-110 321
Msa0139910 MtrunA17_Chr8g0385641 68.874 151 46 1 2 151 259 409 1.15e-71 221
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139910 AT5G13420.1 84.076 157 25 0 1 157 281 437 2.64e-85 257

Find 135 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACAGGAGCCTTTGCTTCT+TGG 0.121680 1_3:+73852043 None:intergenic
TTATATGTTGCTCCTCTTAT+TGG 0.160550 1_3:-73851981 Msa0139910:CDS
CCACGTAGATCAAGGGCTTC+TGG 0.196646 1_3:+73852260 None:intergenic
CATTGTTAGTCTGAAATTCT+TGG 0.237216 1_3:-73851035 Msa0139910:three_prime_UTR
GACAAGATGCTTGAGAAAAT+TGG 0.255255 1_3:-73852287 Msa0139910:exon
AACAATGGCTTCTTCACTTT+CGG 0.265437 1_3:-73855871 Msa0139910:five_prime_UTR
CACAGATGATTTATCATTCT+AGG 0.278158 1_3:+73851067 None:intergenic
TTGGACGGTCTGGAGGCATC+TGG 0.296116 1_3:-73852377 Msa0139910:five_prime_UTR
AGCAGTAGCCCAAGCAGCAC+TGG 0.319222 1_3:-73852129 Msa0139910:CDS
ACATAAAATGACATCAGATT+TGG 0.322012 1_3:+73850813 None:intergenic
TGCATGTGTCCCTTCAATTA+AGG 0.343064 1_3:-73852953 Msa0139910:five_prime_UTR
CTTATTGAAAGTGGTGTTAG+AGG 0.347970 1_3:-73854075 Msa0139910:five_prime_UTR
GATCTGGATCGAAGAGATTC+TGG 0.349569 1_3:+73855806 None:intergenic
TCCAATCAATACCCAACTTC+TGG 0.350106 1_3:+73851305 None:intergenic
TGAAGAACCGTCCTCTTTGC+AGG 0.353042 1_3:+73854171 None:intergenic
CACGTAGATCAAGGGCTTCT+GGG 0.353425 1_3:+73852261 None:intergenic
CAAGTGAGGTGTGAACTTTA+TGG 0.357425 1_3:-73851173 Msa0139910:exon
TTGGGCCAGAAAATTTCTTT+TGG 0.367465 1_3:+73852093 None:intergenic
GTGCTTACAATGATCAATTC+AGG 0.381631 1_3:-73853755 Msa0139910:intron
TTGCATGGTGCAATTATTGC+AGG 0.385691 1_3:+73850945 None:intergenic
TTACAGCTTCATATCTTTCA+AGG 0.387825 1_3:+73852411 None:intergenic
CCTTCTCCTGCAGTGAATCC+AGG 0.391080 1_3:+73851218 None:intergenic
CGATAAATGCTTGAAGGGCT+TGG 0.394216 1_3:+73851395 None:intergenic
AACACCTTACTTATTTACTT+TGG 0.395720 1_3:-73856120 Msa0139910:five_prime_UTR
TTTCCATGTACTTTGTATGC+TGG 0.396835 1_3:-73850987 Msa0139910:three_prime_UTR
TCCAGAAGTTGGGTATTGAT+TGG 0.397913 1_3:-73851306 Msa0139910:CDS
AAGACATTGACAGTGCATAC+TGG 0.398567 1_3:-73853176 Msa0139910:five_prime_UTR
TGTTGGTTCACAGCTTGAAT+TGG 0.398912 1_3:-73851278 Msa0139910:CDS
CTGGTAAGCCAGTGCTGCTT+GGG 0.405777 1_3:+73852121 None:intergenic
GGAATCTTAATATACACATT+GGG 0.407298 1_3:+73852985 None:intergenic
CTCGTGAACTTAGCTCAGTT+TGG 0.407701 1_3:+73856012 None:intergenic
GAACCATAGAAGCTGCAAAA+TGG 0.407939 1_3:-73853029 Msa0139910:five_prime_UTR
TAATCTCTGCCGACCCGTTA+CGG 0.408310 1_3:-73854109 Msa0139910:five_prime_UTR
TGATGCTTACTTGGACGGTC+TGG 0.408914 1_3:-73852387 Msa0139910:five_prime_UTR
GCTGGTAAGCCAGTGCTGCT+TGG 0.416878 1_3:+73852120 None:intergenic
CTAACACCACTTTCAATAAG+AGG 0.417790 1_3:+73854078 None:intergenic
AGCTGTAATTGATGCTTACT+TGG 0.425218 1_3:-73852396 Msa0139910:five_prime_UTR
GCGATAACTTCCTTAATTGA+AGG 0.430140 1_3:+73852943 None:intergenic
TAACTAGAGCTTCCCACCTT+GGG 0.431657 1_3:+73852075 None:intergenic
TGCAAAATGGCTTCATAAAG+TGG 0.434093 1_3:-73853016 Msa0139910:five_prime_UTR
AATAAGAGGAGCAACATATA+AGG 0.440098 1_3:+73851983 None:intergenic
GAAAGCCTTTGACAGCCTCC+TGG 0.444184 1_3:-73851236 Msa0139910:CDS
CGTGATCGATAAATGCTTGA+AGG 0.447597 1_3:+73851389 None:intergenic
TGCTCACAAACAGATGGAAA+TGG 0.453362 1_3:-73854198 Msa0139910:five_prime_UTR
ATGTGATGGCTTACGGTGTC+GGG 0.454815 1_3:+73851957 None:intergenic
GGGACACATGCAGCTGTAGC+TGG 0.457283 1_3:+73852964 None:intergenic
CACGTTCACACTTATTCCAT+TGG 0.457925 1_3:+73852921 None:intergenic
TGCAGGGAACTTGTGCAAGC+AGG 0.463242 1_3:-73853201 Msa0139910:intron
TTAATAAAAGACAGCGGCTA+AGG 0.467268 1_3:-73851112 Msa0139910:three_prime_UTR
TACAATGCTATCCAGAAGTT+GGG 0.474420 1_3:-73851316 Msa0139910:CDS
GTAATGTATGATGCCGCGTA+CGG 0.474741 1_3:-73851136 Msa0139910:three_prime_UTR
ATACAATGCTATCCAGAAGT+TGG 0.476685 1_3:-73851317 Msa0139910:CDS
AATGCTTGAAGGGCTTGGTC+TGG 0.476962 1_3:+73851400 None:intergenic
AGAGGAATCAGATCCGTAAC+GGG 0.477720 1_3:+73854096 None:intergenic
TTAACTAGAGCTTCCCACCT+TGG 0.478200 1_3:+73852074 None:intergenic
TCGATCACGGTGCTGTAGCC+AGG 0.478289 1_3:-73851375 Msa0139910:CDS
GTAAATAAGTAAGGTGTTCG+AGG 0.483157 1_3:+73856125 None:intergenic
GGAGCAACATATAAGGTGTC+AGG 0.483934 1_3:+73851990 None:intergenic
AAATAAATATGTAAGGTTTG+AGG 0.484361 1_3:+73856050 None:intergenic
CCAAGAAGCAAAGGCTCCTG+TGG 0.487273 1_3:-73852043 Msa0139910:CDS
CTGATTCCTCTTATTGAAAG+TGG 0.490876 1_3:-73854084 Msa0139910:five_prime_UTR
TGCATTTGAGTCTATTGTCC+TGG 0.491718 1_3:+73851357 None:intergenic
TTACCTTGCCACGTAGATCA+AGG 0.493289 1_3:+73852252 None:intergenic
GGTATTGATTGGAGCTATGT+TGG 0.495472 1_3:-73851295 Msa0139910:CDS
AACTCCAAAGTAAATAAGTA+AGG 0.497072 1_3:+73856116 None:intergenic
TCAATTTATGATCAAACTGA+TGG 0.501880 1_3:-73853108 Msa0139910:five_prime_UTR
CGATAACTTCCTTAATTGAA+GGG 0.507817 1_3:+73852944 None:intergenic
ATTAAGGAAGTTATCGCCAA+TGG 0.509849 1_3:-73852937 Msa0139910:five_prime_UTR
TAATGTATGATGCCGCGTAC+GGG 0.510892 1_3:-73851135 Msa0139910:three_prime_UTR
CAGCCTCCTGGATTCACTGC+AGG 0.514881 1_3:-73851224 Msa0139910:CDS
TGGAATCTTAATATACACAT+TGG 0.517086 1_3:+73852984 None:intergenic
TTTCTGTTGAAGTATCTCCT+AGG 0.521652 1_3:-73853071 Msa0139910:five_prime_UTR
AGAAACAAGGGCAGAGTCCA+TGG 0.521731 1_3:-73854137 Msa0139910:five_prime_UTR
TATAAGGTGTCAGGATAGGC+AGG 0.522356 1_3:+73851999 None:intergenic
CATGATCTTTATGAGAAACA+AGG 0.525914 1_3:-73854150 Msa0139910:five_prime_UTR
CCTGGATTCACTGCAGGAGA+AGG 0.526429 1_3:-73851218 Msa0139910:CDS
TGAACTTAGCTCAGTTTGGT+TGG 0.526879 1_3:+73856016 None:intergenic
TAATAAAAGACAGCGGCTAA+GGG 0.533896 1_3:-73851111 Msa0139910:three_prime_UTR
GACTGTCCGATCTAAATCAA+TGG 0.535269 1_3:-73850911 Msa0139910:three_prime_UTR
AGACATTGACAGTGCATACT+GGG 0.538449 1_3:-73853175 Msa0139910:five_prime_UTR
CTCGTTCTTTGTCAGTCGAG+TGG 0.539822 1_3:-73852321 Msa0139910:five_prime_UTR
TAACGCTGGTTGAAGCCCAC+AGG 0.542262 1_3:+73852027 None:intergenic
GAAGGCAAAATCTCTTAAGC+TGG 0.547270 1_3:-73851200 Msa0139910:CDS
TACAGCTTCATATCTTTCAA+GGG 0.547625 1_3:+73852412 None:intergenic
GCAGGGAACTTGTGCAAGCA+GGG 0.547808 1_3:-73853200 Msa0139910:intron
ACCTCAAAGAAGTTACAAAA+CGG 0.548564 1_3:+73855696 None:intergenic
AATGTGATGGCTTACGGTGT+CGG 0.552602 1_3:+73851956 None:intergenic
GTAATTGATGCTTACTTGGA+CGG 0.553368 1_3:-73852392 Msa0139910:five_prime_UTR
TGGACGGTCTGGAGGCATCT+GGG 0.554082 1_3:-73852376 Msa0139910:five_prime_UTR
GGTTCACAGCTTGAATTGGA+AGG 0.554895 1_3:-73851274 Msa0139910:CDS
CTTAAGCTGGTCAGCAAGTG+AGG 0.557674 1_3:-73851187 Msa0139910:exon
AAACCAGCATACAAAGTACA+TGG 0.559423 1_3:+73850984 None:intergenic
TACCTTGCCACGTAGATCAA+GGG 0.561590 1_3:+73852253 None:intergenic
TCAGTATCCTCAGCAAGCCT+AGG 0.564022 1_3:+73853054 None:intergenic
CCTCTGCCATTGATTTAGAT+CGG 0.567391 1_3:+73850905 None:intergenic
TGCTTACTTGGACGGTCTGG+AGG 0.568623 1_3:-73852384 Msa0139910:five_prime_UTR
TGAATCCAGGAGGCTGTCAA+AGG 0.570972 1_3:+73851231 None:intergenic
AGTCGAGATTTAAAATTGCA+TGG 0.571287 1_3:+73850930 None:intergenic
CTTCAAGCATTTATCGATCA+CGG 0.571494 1_3:-73851388 Msa0139910:CDS
TCAAATGCATCTGAAGCTGA+AGG 0.573568 1_3:-73851343 Msa0139910:CDS
TTGAAGGGCTTGGTCTGGCA+TGG 0.574976 1_3:+73851405 None:intergenic
AACATATAAGGTGTCAGGAT+AGG 0.576598 1_3:+73851995 None:intergenic
ACGGTGTCGGGTCCAATAAG+AGG 0.578637 1_3:+73851969 None:intergenic
ATTAGATGCTCACAAACAGA+TGG 0.579685 1_3:-73854204 Msa0139910:five_prime_UTR
GATCAAACTGATGGAGGTGA+TGG 0.584623 1_3:-73853099 Msa0139910:five_prime_UTR
CCGATCTAAATCAATGGCAG+AGG 0.586545 1_3:-73850905 Msa0139910:three_prime_UTR
ACGTAGATCAAGGGCTTCTG+GGG 0.588870 1_3:+73852262 None:intergenic
GTGATCGATAAATGCTTGAA+GGG 0.588921 1_3:+73851390 None:intergenic
AGCCCTTGATCTACGTGGCA+AGG 0.589288 1_3:-73852255 Msa0139910:intron
AAGAGGAATCAGATCCGTAA+CGG 0.596662 1_3:+73854095 None:intergenic
CAAGAAGCAAAGGCTCCTGT+GGG 0.597921 1_3:-73852042 Msa0139910:CDS
TGCATGGTGCAATTATTGCA+GGG 0.598726 1_3:+73850946 None:intergenic
ATGATCTTTATGAGAAACAA+GGG 0.602950 1_3:-73854149 Msa0139910:five_prime_UTR
ATTTATGATCAAACTGATGG+AGG 0.617182 1_3:-73853105 Msa0139910:five_prime_UTR
TGGAGTTCCTGCAAAGAGGA+CGG 0.623273 1_3:-73854178 Msa0139910:five_prime_UTR
ATACTGGGAACTTGTAGTGA+AGG 0.629191 1_3:-73853160 Msa0139910:five_prime_UTR
TACAACTATCTCGTTCACGC+TGG 0.630000 1_3:+73855908 None:intergenic
AGGCTTGCTGAGGATACTGA+AGG 0.632568 1_3:-73853051 Msa0139910:five_prime_UTR
CGGCAGAGATTATCATACCA+TGG 0.638956 1_3:+73854120 None:intergenic
GAATCTTAATATACACATTG+GGG 0.640842 1_3:+73852986 None:intergenic
AGAAACAATGCTTATACACA+TGG 0.643168 1_3:-73856160 None:intergenic
GAAATGGAGTTCCTGCAAAG+AGG 0.646124 1_3:-73854182 Msa0139910:five_prime_UTR
AATAAAAGACAGCGGCTAAG+GGG 0.653569 1_3:-73851110 Msa0139910:three_prime_UTR
GAATCAGATCCGTAACGGGT+CGG 0.659162 1_3:+73854100 None:intergenic
CAACACTTGTGACTCTAGAG+AGG 0.660116 1_3:+73852345 None:intergenic
ATAGGCAGGATTCTTAACGC+TGG 0.660124 1_3:+73852013 None:intergenic
AGTATCTCCTAGGCTTGCTG+AGG 0.671909 1_3:-73853061 Msa0139910:five_prime_UTR
GAGATTCTGGTAAAGAAGCG+CGG 0.678266 1_3:+73855819 None:intergenic
CACTCGACTGACAAAGAACG+AGG 0.684880 1_3:+73852322 None:intergenic
TCTCCTGCAGTGAATCCAGG+AGG 0.685827 1_3:+73851221 None:intergenic
TTCTTAAAGAAGAAGCAGAG+AGG 0.689999 1_3:+73855732 None:intergenic
CAAACTGAGCTAAGTTCACG+AGG 0.690711 1_3:-73856011 Msa0139910:five_prime_UTR
CCAGAAGCCCTTGATCTACG+TGG 0.710968 1_3:-73852260 Msa0139910:CDS
TACGGGTTAATAAAAGACAG+CGG 0.756696 1_3:-73851118 Msa0139910:three_prime_UTR
AGGCGTCACTAGCAACCCAG+CGG 0.791833 1_3:-73854055 Msa0139910:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTATTAAAATTTT+TGG - chr1_3:73851977-73851996 Msa0139910:CDS 0.0%
!!! ATTAAATACTTTTAATTTTC+AGG - chr1_3:73851930-73851949 Msa0139910:intron 10.0%
!! ACAAATTATTTAAAAATTCA+GGG + chr1_3:73855247-73855266 None:intergenic 10.0%
!! TACAAATTATTTAAAAATTC+AGG + chr1_3:73855248-73855267 None:intergenic 10.0%
!!! ATTTTTAAATAATTTGTATC+TGG - chr1_3:73855250-73855269 Msa0139910:intron 10.0%
!!! TTTTTAAATAATTTGTATCT+GGG - chr1_3:73855251-73855270 Msa0139910:intron 10.0%
!! GATTAAAAAACAATTATTTA+AGG - chr1_3:73855323-73855342 Msa0139910:intron 10.0%
!!! ATGTTTTAGTTTTAATATTA+TGG - chr1_3:73856145-73856164 Msa0139910:five_prime_UTR 10.0%
!!! TAGTATACTCATTTTTTTTT+TGG - chr1_3:73850849-73850868 Msa0139910:three_prime_UTR 15.0%
!! TGCATAAAAATAAATATGTA+AGG + chr1_3:73850899-73850918 None:intergenic 15.0%
!! TCTATATGACATTATTTAAT+TGG + chr1_3:73851553-73851572 None:intergenic 15.0%
!! ATATATATATAGTTGCATTA+TGG - chr1_3:73851854-73851873 Msa0139910:intron 15.0%
!! TGTAAAAAAAATTACACTAT+CGG - chr1_3:73851898-73851917 Msa0139910:intron 15.0%
!!! AAATTTGAAAGAAAAACTTT+TGG + chr1_3:73853232-73853251 None:intergenic 15.0%
!! TATAAAAAAAATAGAAATCG+AGG + chr1_3:73853597-73853616 None:intergenic 15.0%
!!! TCGATTTCTATTTTTTTTAT+AGG - chr1_3:73853596-73853615 Msa0139910:intron 15.0%
!!! ATTTCTATTTTTTTTATAGG+AGG - chr1_3:73853599-73853618 Msa0139910:intron 15.0%
!!! TTTCTATTTTTTTTATAGGA+GGG - chr1_3:73853600-73853619 Msa0139910:intron 15.0%
!!! AAGATCTAAAATTATACTTA+AGG + chr1_3:73853640-73853659 None:intergenic 15.0%
!!! TTATTATGTTGATTATATCA+AGG + chr1_3:73854159-73854178 None:intergenic 15.0%
!! TGATATAATCAACATAATAA+TGG - chr1_3:73854159-73854178 Msa0139910:five_prime_UTR 15.0%
!! GATATAATCAACATAATAAT+GGG - chr1_3:73854160-73854179 Msa0139910:five_prime_UTR 15.0%
!!! GACAATTTTTTCAAAATTTA+CGG - chr1_3:73855296-73855315 Msa0139910:intron 15.0%
!! AAAATGTTTAATTAATCTGA+AGG + chr1_3:73855408-73855427 None:intergenic 15.0%
!! AAATAAATATGTAAGGTTTG+AGG + chr1_3:73850892-73850911 None:intergenic 20.0%
!!! ACAATTTTCATTTTCAACAA+TGG - chr1_3:73851053-73851072 Msa0139910:three_prime_UTR 20.0%
!!! TTTTGATTTTTATACACTGA+CGG - chr1_3:73851435-73851454 Msa0139910:intron 20.0%
!! TAATGTCATATAGATATTTG+TGG - chr1_3:73851559-73851578 Msa0139910:intron 20.0%
!! AGAGATTAATCTCTAAATAA+TGG - chr1_3:73851674-73851693 Msa0139910:intron 20.0%
!!! CATGAAATTTGTTTTTTCAT+TGG - chr1_3:73852038-73852057 Msa0139910:CDS 20.0%
!! AGCTTAACATTAAAGTTAAA+GGG + chr1_3:73852328-73852347 None:intergenic 20.0%
!! AAGCTTAACATTAAAGTTAA+AGG + chr1_3:73852329-73852348 None:intergenic 20.0%
!! TCATATTCATTATAAACTTG+AGG + chr1_3:73852643-73852662 None:intergenic 20.0%
!!! ATTTTTGAAACATTATTCCT+AGG + chr1_3:73853017-73853036 None:intergenic 20.0%
!! AATGTTTCAAAAATCAATAC+TGG - chr1_3:73853023-73853042 Msa0139910:five_prime_UTR 20.0%
!! AAACTAAATATACTTTGTGA+AGG + chr1_3:73853362-73853381 None:intergenic 20.0%
!!! AAAGTATATTTAGTTTAGCT+TGG - chr1_3:73853366-73853385 Msa0139910:intron 20.0%
!!! TTCTATTTTTTTTATAGGAG+GGG - chr1_3:73853601-73853620 Msa0139910:intron 20.0%
!! AAAATAGAACATTAAACTCA+CGG + chr1_3:73853685-73853704 None:intergenic 20.0%
!!! AATGTTCTATTTTTAATTCG+TGG - chr1_3:73853692-73853711 Msa0139910:intron 20.0%
!! ATAGATTTATGAACTATTTG+AGG - chr1_3:73855085-73855104 Msa0139910:intron 20.0%
!! AAAAAAAAAAACCAAGTTCA+GGG + chr1_3:73855185-73855204 None:intergenic 20.0%
!! TAAAAAAAAAAACCAAGTTC+AGG + chr1_3:73855186-73855205 None:intergenic 20.0%
! AACACCTTACTTATTTACTT+TGG - chr1_3:73850819-73850838 Msa0139910:three_prime_UTR 25.0%
! AACTCCAAAGTAAATAAGTA+AGG + chr1_3:73850826-73850845 None:intergenic 25.0%
!!! TACTCATTTTTTTTTTGGAG+TGG - chr1_3:73850854-73850873 Msa0139910:three_prime_UTR 25.0%
! ACAGTCATTGGATATTTAAT+TGG + chr1_3:73851485-73851504 None:intergenic 25.0%
! CAATTATTGTATACAGTCAT+TGG + chr1_3:73851497-73851516 None:intergenic 25.0%
! TAAGAACTAACATGTAAAAG+TGG - chr1_3:73851592-73851611 Msa0139910:intron 25.0%
! ACTCTCTACAATTATCTATT+TGG + chr1_3:73851790-73851809 None:intergenic 25.0%
!!! ACAACTTAATTTGTAGCTTA+CGG - chr1_3:73852075-73852094 Msa0139910:CDS 25.0%
! AAAATAAAGTCAAATTGCGT+AGG - chr1_3:73852152-73852171 Msa0139910:intron 25.0%
! TTGTCAGAATAATACTTAGT+GGG - chr1_3:73852347-73852366 Msa0139910:five_prime_UTR 25.0%
! TCAAATATACACCAAGTATA+TGG + chr1_3:73852518-73852537 None:intergenic 25.0%
!!! TACTTGGTGTATATTTGAAT+TGG - chr1_3:73852520-73852539 Msa0139910:intron 25.0%
! ATTCATTATAAACTTGAGGT+TGG + chr1_3:73852639-73852658 None:intergenic 25.0%
! ATGATCTTTATGAGAAACAA+GGG - chr1_3:73852790-73852809 Msa0139910:intron 25.0%
! TAACATAAATTATTACCGCT+GGG + chr1_3:73852902-73852921 None:intergenic 25.0%
! ATAACATAAATTATTACCGC+TGG + chr1_3:73852903-73852922 None:intergenic 25.0%
! GTAATAATGAAAGACTTGTA+TGG - chr1_3:73852949-73852968 Msa0139910:five_prime_UTR 25.0%
!!! TTACAACTCTTAAAAGTGTT+TGG + chr1_3:73853066-73853085 None:intergenic 25.0%
! TGGTATTAGTATATGATTGA+TGG + chr1_3:73853212-73853231 None:intergenic 25.0%
! AAATAGAACATTAAACTCAC+GGG + chr1_3:73853684-73853703 None:intergenic 25.0%
! TAAAATTACATGATCATGCA+GGG - chr1_3:73853722-73853741 Msa0139910:intron 25.0%
! TCAATTTATGATCAAACTGA+TGG - chr1_3:73853831-73853850 Msa0139910:intron 25.0%
! GAATCTTAATATACACATTG+GGG + chr1_3:73853956-73853975 None:intergenic 25.0%
! GGAATCTTAATATACACATT+GGG + chr1_3:73853957-73853976 None:intergenic 25.0%
! TGGAATCTTAATATACACAT+TGG + chr1_3:73853958-73853977 None:intergenic 25.0%
! TATGTTAACATGCTATAAGT+TGG - chr1_3:73854103-73854122 Msa0139910:five_prime_UTR 25.0%
! ATGTTAACATGCTATAAGTT+GGG - chr1_3:73854104-73854123 Msa0139910:five_prime_UTR 25.0%
!! ATAATCAACATAATAATGGG+TGG - chr1_3:73854163-73854182 Msa0139910:five_prime_UTR 25.0%
!!! TCACTTTTCCAAATTATTAC+TGG + chr1_3:73854279-73854298 None:intergenic 25.0%
! CTTCTAAATGAAGATGTATT+TGG + chr1_3:73854362-73854381 None:intergenic 25.0%
! ACAAATGTATATTTAGACTC+CGG + chr1_3:73854488-73854507 None:intergenic 25.0%
!! AAAATTTCTTTTGGTATAGC+TGG + chr1_3:73854840-73854859 None:intergenic 25.0%
!! CTATACCAAAAGAAATTTTC+TGG - chr1_3:73854841-73854860 Msa0139910:intron 25.0%
! GGATTATTGAAAAAATGTGA+TGG + chr1_3:73854999-73855018 None:intergenic 25.0%
! TTCAATAATCCATTTGCTTA+TGG - chr1_3:73855008-73855027 Msa0139910:intron 25.0%
! AAACTGAAGAAAATACTACT+TGG + chr1_3:73855055-73855074 None:intergenic 25.0%
!! CTATTTGAGGATTTTCAAAA+AGG - chr1_3:73855098-73855117 Msa0139910:intron 25.0%
!! GAACATTTTTGACAATTTCA+GGG + chr1_3:73855154-73855173 None:intergenic 25.0%
!! TGAACATTTTTGACAATTTC+AGG + chr1_3:73855155-73855174 None:intergenic 25.0%
! CTTGTTAGGAATTTGTAATT+AGG + chr1_3:73855350-73855369 None:intergenic 25.0%
! CTTGATTATGTTAACAAACT+TGG - chr1_3:73855450-73855469 Msa0139910:intron 25.0%
! ACATAAAATGACATCAGATT+TGG + chr1_3:73856129-73856148 None:intergenic 25.0%
ACCTCAAAGAAGTTACAAAA+CGG + chr1_3:73851246-73851265 None:intergenic 30.0%
!!! TTCATGCTTATTTTTGCATG+CGG - chr1_3:73851296-73851315 Msa0139910:CDS 30.0%
GATTAATTTCTATCCACTGA+CGG - chr1_3:73851723-73851742 Msa0139910:intron 30.0%
TCTATTTGGCATCATTTGAT+TGG + chr1_3:73851776-73851795 None:intergenic 30.0%
GCATTATGGAATGATTTGAT+TGG - chr1_3:73851868-73851887 Msa0139910:intron 30.0%
!!! GTTTTTTCATTGGTTCTGTT+TGG - chr1_3:73852048-73852067 Msa0139910:CDS 30.0%
TTGGCTTATTTACTGACATA+AGG + chr1_3:73852296-73852315 None:intergenic 30.0%
ATTAAAGTTAAAGGGCTGTT+TGG + chr1_3:73852320-73852339 None:intergenic 30.0%
CTTGTCAGAATAATACTTAG+TGG - chr1_3:73852346-73852365 Msa0139910:five_prime_UTR 30.0%
ACAGTATAACACCATGATTT+CGG + chr1_3:73852473-73852492 None:intergenic 30.0%
ATATACACCAAGTATATGGT+TGG + chr1_3:73852514-73852533 None:intergenic 30.0%
TTGGTGTATATTTGAATTGG+TGG - chr1_3:73852523-73852542 Msa0139910:intron 30.0%
! TGTTGCTATTGTCAAAATCA+TGG - chr1_3:73852595-73852614 Msa0139910:intron 30.0%
! CCTCAATATAAATGTCGATT+AGG + chr1_3:73852681-73852700 None:intergenic 30.0%
CCTAATCGACATTTATATTG+AGG - chr1_3:73852678-73852697 Msa0139910:intron 30.0%
CATGATCTTTATGAGAAACA+AGG - chr1_3:73852789-73852808 Msa0139910:intron 30.0%
! CGAAGATATTTTTCTATCCT+AGG - chr1_3:73852997-73853016 Msa0139910:five_prime_UTR 30.0%
TGTTGTCAAATTGTAGATGT+AGG + chr1_3:73853470-73853489 None:intergenic 30.0%
TCACGGGAATATAATACTTA+AGG + chr1_3:73853668-73853687 None:intergenic 30.0%
!!! TCTATTTTTAATTCGTGGTG+TGG - chr1_3:73853697-73853716 Msa0139910:intron 30.0%
CTAAAATTACATGATCATGC+AGG - chr1_3:73853721-73853740 Msa0139910:intron 30.0%
ATTTATGATCAAACTGATGG+AGG - chr1_3:73853834-73853853 Msa0139910:intron 30.0%
CGATAACTTCCTTAATTGAA+GGG + chr1_3:73853998-73854017 None:intergenic 30.0%
! TGTTGATTATATCAAGGACA+AGG + chr1_3:73854153-73854172 None:intergenic 30.0%
TGTTGACACCAGTAATAATT+TGG - chr1_3:73854268-73854287 Msa0139910:intron 30.0%
GGAGTCTAAATATACATTTG+TGG - chr1_3:73854487-73854506 Msa0139910:intron 30.0%
TACAGCTTCATATCTTTCAA+GGG + chr1_3:73854530-73854549 None:intergenic 30.0%
TTACAGCTTCATATCTTTCA+AGG + chr1_3:73854531-73854550 None:intergenic 30.0%
GCAATAAAGAAAAGAGTAAG+CGG + chr1_3:73854713-73854732 None:intergenic 30.0%
! TTATTGCCAATTTTTGCGTT+TGG - chr1_3:73854726-73854745 Msa0139910:intron 30.0%
TCAAATCCAAACGCAAAAAT+TGG + chr1_3:73854735-73854754 None:intergenic 30.0%
AATAAGAGGAGCAACATATA+AGG + chr1_3:73854959-73854978 None:intergenic 30.0%
TTATATGTTGCTCCTCTTAT+TGG - chr1_3:73854958-73854977 Msa0139910:intron 30.0%
TGAAAAAATGTGATGGCTTA+CGG + chr1_3:73854992-73855011 None:intergenic 30.0%
CCATAATAACCATAAGCAAA+TGG + chr1_3:73855020-73855039 None:intergenic 30.0%
CCATTTGCTTATGGTTATTA+TGG - chr1_3:73855017-73855036 Msa0139910:intron 30.0%
TACAAATTCCTAACAAGTTC+AGG - chr1_3:73855353-73855372 Msa0139910:intron 30.0%
ACAAATTCCTAACAAGTTCA+GGG - chr1_3:73855354-73855373 Msa0139910:intron 30.0%
! ATTAAATCCCTGAACTTGTT+AGG + chr1_3:73855364-73855383 None:intergenic 30.0%
TCTTTAATGAACATCTCGTT+AGG - chr1_3:73855427-73855446 Msa0139910:intron 30.0%
GTAATGTTAGTTCAGGTATT+AGG + chr1_3:73855488-73855507 None:intergenic 30.0%
CACAGATGATTTATCATTCT+AGG + chr1_3:73855875-73855894 None:intergenic 30.0%
! CATTGTTAGTCTGAAATTCT+TGG - chr1_3:73855904-73855923 Msa0139910:five_prime_UTR 30.0%
!!! TACTTTGTATGCTGGTTTTT+AGG - chr1_3:73855960-73855979 Msa0139910:five_prime_UTR 30.0%
!!! ACTTTGTATGCTGGTTTTTA+GGG - chr1_3:73855961-73855980 Msa0139910:five_prime_UTR 30.0%
! AGTCGAGATTTAAAATTGCA+TGG + chr1_3:73856012-73856031 None:intergenic 30.0%
! GTAAATAAGTAAGGTGTTCG+AGG + chr1_3:73850817-73850836 None:intergenic 35.0%
AACAATGGCTTCTTCACTTT+CGG - chr1_3:73851068-73851087 Msa0139910:three_prime_UTR 35.0%
TTCTTAAAGAAGAAGCAGAG+AGG + chr1_3:73851210-73851229 None:intergenic 35.0%
! ACCGTTTTGTAACTTCTTTG+AGG - chr1_3:73851242-73851261 Msa0139910:CDS 35.0%
!!! CGATGTGTTTTGTTGTTGTA+AGG - chr1_3:73851398-73851417 Msa0139910:CDS 35.0%
! GTTGTAAGGATGTGTTTTGT+TGG - chr1_3:73851412-73851431 Msa0139910:CDS 35.0%
GAAAATATTTACACCGTCAG+TGG + chr1_3:73851739-73851758 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTAAGT+TGG - chr1_3:73852180-73852199 Msa0139910:intron 35.0%
TCAGAATAATACTTAGTGGG+TGG - chr1_3:73852350-73852369 Msa0139910:five_prime_UTR 35.0%
TGGTGAGTTATGCAAAATCA+CGG - chr1_3:73852543-73852562 Msa0139910:intron 35.0%
GTCGATTAGGAAACAAAACA+AGG + chr1_3:73852668-73852687 None:intergenic 35.0%
ATTAGATGCTCACAAACAGA+TGG - chr1_3:73852735-73852754 Msa0139910:intron 35.0%
CTGATTCCTCTTATTGAAAG+TGG - chr1_3:73852855-73852874 Msa0139910:intron 35.0%
CTAACACCACTTTCAATAAG+AGG + chr1_3:73852864-73852883 None:intergenic 35.0%
! CTTATTGAAAGTGGTGTTAG+AGG - chr1_3:73852864-73852883 Msa0139910:intron 35.0%
ATATCTTCGCACAAGTAGAA+CGG + chr1_3:73852986-73853005 None:intergenic 35.0%
GTGCTTACAATGATCAATTC+AGG - chr1_3:73853184-73853203 Msa0139910:five_prime_UTR 35.0%
CAATAAAGTAGAGTAAACCG+TGG - chr1_3:73853258-73853277 Msa0139910:intron 35.0%
GAGTAATACAACGATTATGC+AGG + chr1_3:73853324-73853343 None:intergenic 35.0%
TAGCTTGGTAAACTACACAA+AGG - chr1_3:73853381-73853400 Msa0139910:intron 35.0%
! TTTCTGTTGAAGTATCTCCT+AGG - chr1_3:73853868-73853887 Msa0139910:intron 35.0%
TGCAAAATGGCTTCATAAAG+TGG - chr1_3:73853923-73853942 Msa0139910:intron 35.0%
GCGATAACTTCCTTAATTGA+AGG + chr1_3:73853999-73854018 None:intergenic 35.0%
ATTAAGGAAGTTATCGCCAA+TGG - chr1_3:73854002-73854021 Msa0139910:intron 35.0%
GTTATGCTAGTTAGAAGTGA+GGG - chr1_3:73854193-73854212 Msa0139910:five_prime_UTR 35.0%
TTGAATGTAACCTCATGTGT+TGG - chr1_3:73854299-73854318 Msa0139910:intron 35.0%
! ATTTGGTGAATGACATGTGT+CGG + chr1_3:73854345-73854364 None:intergenic 35.0%
!! GATTACTTTTACCATGTTGC+CGG - chr1_3:73854466-73854485 Msa0139910:intron 35.0%
AGCTGTAATTGATGCTTACT+TGG - chr1_3:73854543-73854562 Msa0139910:intron 35.0%
GTAATTGATGCTTACTTGGA+CGG - chr1_3:73854547-73854566 Msa0139910:intron 35.0%
GACAAGATGCTTGAGAAAAT+TGG - chr1_3:73854652-73854671 Msa0139910:intron 35.0%
! TTGGGCCAGAAAATTTCTTT+TGG + chr1_3:73854849-73854868 None:intergenic 35.0%
!! AAAAGAAATTTTCTGGCCCA+AGG - chr1_3:73854848-73854867 Msa0139910:intron 35.0%
! TGGGAAGCTCTAGTTAAAAA+AGG - chr1_3:73854871-73854890 Msa0139910:intron 35.0%
! GGGAAGCTCTAGTTAAAAAA+GGG - chr1_3:73854872-73854891 Msa0139910:intron 35.0%
! GGAAGCTCTAGTTAAAAAAG+GGG - chr1_3:73854873-73854892 Msa0139910:intron 35.0%
! AACATATAAGGTGTCAGGAT+AGG + chr1_3:73854947-73854966 None:intergenic 35.0%
TTCATTTAGATCCCTGAACT+TGG - chr1_3:73855171-73855190 Msa0139910:intron 35.0%
TGAGAAGGTAATGTTAGTTC+AGG + chr1_3:73855495-73855514 None:intergenic 35.0%
GTGATCGATAAATGCTTGAA+GGG + chr1_3:73855552-73855571 None:intergenic 35.0%
CTTCAAGCATTTATCGATCA+CGG - chr1_3:73855551-73855570 Msa0139910:intron 35.0%
ATACAATGCTATCCAGAAGT+TGG - chr1_3:73855622-73855641 Msa0139910:intron 35.0%
TACAATGCTATCCAGAAGTT+GGG - chr1_3:73855623-73855642 Msa0139910:intron 35.0%
! TACGGGTTAATAAAAGACAG+CGG - chr1_3:73855821-73855840 Msa0139910:five_prime_UTR 35.0%
TTAATAAAAGACAGCGGCTA+AGG - chr1_3:73855827-73855846 Msa0139910:five_prime_UTR 35.0%
TAATAAAAGACAGCGGCTAA+GGG - chr1_3:73855828-73855847 Msa0139910:five_prime_UTR 35.0%
TTTCCATGTACTTTGTATGC+TGG - chr1_3:73855952-73855971 Msa0139910:five_prime_UTR 35.0%
AAACCAGCATACAAAGTACA+TGG + chr1_3:73855958-73855977 None:intergenic 35.0%
TGAACTTAGCTCAGTTTGGT+TGG + chr1_3:73850926-73850945 None:intergenic 40.0%
! AGCTAAGAAGCTCGTTTTGA+TGG + chr1_3:73851158-73851177 None:intergenic 40.0%
AGTTAAAGGGCTGTTTGGAT+TGG + chr1_3:73852315-73852334 None:intergenic 40.0%
GCTATTACAAACCGACTGTA+AGG + chr1_3:73852382-73852401 None:intergenic 40.0%
!! ACAGTCGGTTTGTAATAGCA+CGG - chr1_3:73852383-73852402 Msa0139910:five_prime_UTR 40.0%
ACGGTGTTTGACAAAGTTAC+AGG - chr1_3:73852402-73852421 Msa0139910:five_prime_UTR 40.0%
CGGTGTTTGACAAAGTTACA+GGG - chr1_3:73852403-73852422 Msa0139910:five_prime_UTR 40.0%
GGTGTTTGACAAAGTTACAG+GGG - chr1_3:73852404-73852423 Msa0139910:five_prime_UTR 40.0%
TTTCGGCAAAAGCTGCAATT+TGG + chr1_3:73852456-73852475 None:intergenic 40.0%
! CAAGTATATGGTTGGATTGG+TGG + chr1_3:73852506-73852525 None:intergenic 40.0%
CACCAATCCAACCATATACT+TGG - chr1_3:73852504-73852523 Msa0139910:intron 40.0%
CACCAAGTATATGGTTGGAT+TGG + chr1_3:73852509-73852528 None:intergenic 40.0%
TGAGTTATGCAAAATCACGG+TGG - chr1_3:73852546-73852565 Msa0139910:intron 40.0%
TGAGGCAAACATTTGACTGT+TGG - chr1_3:73852696-73852715 Msa0139910:intron 40.0%
GCAAACATTTGACTGTTGGT+TGG - chr1_3:73852700-73852719 Msa0139910:intron 40.0%
TGCTCACAAACAGATGGAAA+TGG - chr1_3:73852741-73852760 Msa0139910:intron 40.0%
AAGAGGAATCAGATCCGTAA+CGG + chr1_3:73852847-73852866 None:intergenic 40.0%
CTGCAATCATGTGGTATAGA+CGG + chr1_3:73853136-73853155 None:intergenic 40.0%
CTGAAAGATCTGCAATCATG+TGG + chr1_3:73853145-73853164 None:intergenic 40.0%
TAAAGTAGAGTAAACCGTGG+AGG - chr1_3:73853261-73853280 Msa0139910:intron 40.0%
AAGGTCAATGTTGTCAATCC+CGG - chr1_3:73853400-73853419 Msa0139910:intron 40.0%
AATCGCAATTCTCTGTGATC+CGG + chr1_3:73853422-73853441 None:intergenic 40.0%
GTGTACTAAATCGTGTATCG+CGG - chr1_3:73853492-73853511 Msa0139910:intron 40.0%
GCATAGAGAGTTTGGAGAAA+CGG + chr1_3:73853526-73853545 None:intergenic 40.0%
TCTCCAAACTCTCTATGCTA+TGG - chr1_3:73853528-73853547 Msa0139910:intron 40.0%
AAGACATTGACAGTGCATAC+TGG - chr1_3:73853763-73853782 Msa0139910:five_prime_UTR 40.0%
AGACATTGACAGTGCATACT+GGG - chr1_3:73853764-73853783 Msa0139910:five_prime_UTR 40.0%
ATACTGGGAACTTGTAGTGA+AGG - chr1_3:73853779-73853798 Msa0139910:five_prime_UTR 40.0%
GAACCATAGAAGCTGCAAAA+TGG - chr1_3:73853910-73853929 Msa0139910:intron 40.0%
!! AAGCCATTTTGCAGCTTCTA+TGG + chr1_3:73853916-73853935 None:intergenic 40.0%
TGCATGTGTCCCTTCAATTA+AGG - chr1_3:73853986-73854005 Msa0139910:intron 40.0%
CACGTTCACACTTATTCCAT+TGG + chr1_3:73854021-73854040 None:intergenic 40.0%
!! CATAATAATGGGTGGTAGCA+AGG - chr1_3:73854171-73854190 Msa0139910:five_prime_UTR 40.0%
GGTTATGCTAGTTAGAAGTG+AGG - chr1_3:73854192-73854211 Msa0139910:five_prime_UTR 40.0%
GTCAATATCAGTGATGTGTC+TGG + chr1_3:73854247-73854266 None:intergenic 40.0%
ATATTTAGACTCCGGCAACA+TGG + chr1_3:73854480-73854499 None:intergenic 40.0%
TATCTGGGTCCTTAAAGTCA+GGG - chr1_3:73855266-73855285 Msa0139910:intron 40.0%
TCATCAAGTCCCTGACTTTA+AGG + chr1_3:73855278-73855297 None:intergenic 40.0%
TACCTTCTCATTTACTTCCC+AGG - chr1_3:73855505-73855524 Msa0139910:intron 40.0%
TACCTGGGAAGTAAATGAGA+AGG + chr1_3:73855510-73855529 None:intergenic 40.0%
CGTGATCGATAAATGCTTGA+AGG + chr1_3:73855553-73855572 None:intergenic 40.0%
TGCATTTGAGTCTATTGTCC+TGG + chr1_3:73855585-73855604 None:intergenic 40.0%
! TCAAATGCATCTGAAGCTGA+AGG - chr1_3:73855596-73855615 Msa0139910:intron 40.0%
!! TCCAGAAGTTGGGTATTGAT+TGG - chr1_3:73855633-73855652 Msa0139910:intron 40.0%
TCCAATCAATACCCAACTTC+TGG + chr1_3:73855637-73855656 None:intergenic 40.0%
!! GGTATTGATTGGAGCTATGT+TGG - chr1_3:73855644-73855663 Msa0139910:intron 40.0%
!! TGTTGGTTCACAGCTTGAAT+TGG - chr1_3:73855661-73855680 Msa0139910:intron 40.0%
GAAGGCAAAATCTCTTAAGC+TGG - chr1_3:73855739-73855758 Msa0139910:five_prime_UTR 40.0%
CAAGTGAGGTGTGAACTTTA+TGG - chr1_3:73855766-73855785 Msa0139910:five_prime_UTR 40.0%
! GTCTTTTATTAACCCGTACG+CGG + chr1_3:73855819-73855838 None:intergenic 40.0%
AATAAAAGACAGCGGCTAAG+GGG - chr1_3:73855829-73855848 Msa0139910:five_prime_UTR 40.0%
TGCATGGTGCAATTATTGCA+GGG + chr1_3:73855996-73856015 None:intergenic 40.0%
TTGCATGGTGCAATTATTGC+AGG + chr1_3:73855997-73856016 None:intergenic 40.0%
GACTGTCCGATCTAAATCAA+TGG - chr1_3:73856028-73856047 Msa0139910:five_prime_UTR 40.0%
!! CCTCTGCCATTGATTTAGAT+CGG + chr1_3:73856037-73856056 None:intergenic 40.0%
CTCGTGAACTTAGCTCAGTT+TGG + chr1_3:73850930-73850949 None:intergenic 45.0%
CAAACTGAGCTAAGTTCACG+AGG - chr1_3:73850928-73850947 Msa0139910:three_prime_UTR 45.0%
TACAACTATCTCGTTCACGC+TGG + chr1_3:73851034-73851053 None:intergenic 45.0%
GAGATTCTGGTAAAGAAGCG+CGG + chr1_3:73851123-73851142 None:intergenic 45.0%
GATCTGGATCGAAGAGATTC+TGG + chr1_3:73851136-73851155 None:intergenic 45.0%
!! GAAGCTCGTTTTGATGGATC+TGG + chr1_3:73851152-73851171 None:intergenic 45.0%
TTTGTAGCTTACGGCGTAAG+TGG - chr1_3:73852084-73852103 Msa0139910:CDS 45.0%
GGTGGTATTTGCCTTACAGT+CGG - chr1_3:73852368-73852387 Msa0139910:five_prime_UTR 45.0%
! TGCAGCTTTTGCCGAAATCA+TGG - chr1_3:73852459-73852478 Msa0139910:intron 45.0%
ACTTGAGGTTGGCAGAATCA+TGG + chr1_3:73852628-73852647 None:intergenic 45.0%
TGTGAGCATCTAATCCTGCA+AGG + chr1_3:73852729-73852748 None:intergenic 45.0%
GAAATGGAGTTCCTGCAAAG+AGG - chr1_3:73852757-73852776 Msa0139910:intron 45.0%
CGGCAGAGATTATCATACCA+TGG + chr1_3:73852822-73852841 None:intergenic 45.0%
AGAGGAATCAGATCCGTAAC+GGG + chr1_3:73852846-73852865 None:intergenic 45.0%
ATCGCAATTCTCTGTGATCC+GGG + chr1_3:73853421-73853440 None:intergenic 45.0%
GATCAAACTGATGGAGGTGA+TGG - chr1_3:73853840-73853859 Msa0139910:intron 45.0%
! CAACACTTGTGACTCTAGAG+AGG + chr1_3:73854597-73854616 None:intergenic 45.0%
TACCTTGCCACGTAGATCAA+GGG + chr1_3:73854689-73854708 None:intergenic 45.0%
TTACCTTGCCACGTAGATCA+AGG + chr1_3:73854690-73854709 None:intergenic 45.0%
!! AGAAATTTTCTGGCCCAAGG+TGG - chr1_3:73854851-73854870 Msa0139910:intron 45.0%
!! GAAATTTTCTGGCCCAAGGT+GGG - chr1_3:73854852-73854871 Msa0139910:intron 45.0%
TAACTAGAGCTTCCCACCTT+GGG + chr1_3:73854867-73854886 None:intergenic 45.0%
TTAACTAGAGCTTCCCACCT+TGG + chr1_3:73854868-73854887 None:intergenic 45.0%
AAAAAGGGGCCAAGAAGCAA+AGG - chr1_3:73854887-73854906 Msa0139910:intron 45.0%
ATAGGCAGGATTCTTAACGC+TGG + chr1_3:73854929-73854948 None:intergenic 45.0%
! TATAAGGTGTCAGGATAGGC+AGG + chr1_3:73854943-73854962 None:intergenic 45.0%
! GGAGCAACATATAAGGTGTC+AGG + chr1_3:73854952-73854971 None:intergenic 45.0%
AATGTGATGGCTTACGGTGT+CGG + chr1_3:73854986-73855005 None:intergenic 45.0%
GTATCTGGGTCCTTAAAGTC+AGG - chr1_3:73855265-73855284 Msa0139910:intron 45.0%
CGATAAATGCTTGAAGGGCT+TGG + chr1_3:73855547-73855566 None:intergenic 45.0%
GGTTCACAGCTTGAATTGGA+AGG - chr1_3:73855665-73855684 Msa0139910:intron 45.0%
GTAATGTATGATGCCGCGTA+CGG - chr1_3:73855803-73855822 Msa0139910:five_prime_UTR 45.0%
TAATGTATGATGCCGCGTAC+GGG - chr1_3:73855804-73855823 Msa0139910:five_prime_UTR 45.0%
CCGATCTAAATCAATGGCAG+AGG - chr1_3:73856034-73856053 Msa0139910:five_prime_UTR 45.0%
!!! TTAAATAATTGTTTTTTAAT+CGG + chr1_3:73855324-73855343 None:intergenic 5.0%
!! ATTAAAAAACAATTATTTAA+GGG - chr1_3:73855324-73855343 Msa0139910:intron 5.0%
TGGAGTTCCTGCAAAGAGGA+CGG - chr1_3:73852761-73852780 Msa0139910:intron 50.0%
TGAAGAACCGTCCTCTTTGC+AGG + chr1_3:73852771-73852790 None:intergenic 50.0%
AGAAACAAGGGCAGAGTCCA+TGG - chr1_3:73852802-73852821 Msa0139910:intron 50.0%
TAATCTCTGCCGACCCGTTA+CGG - chr1_3:73852830-73852849 Msa0139910:intron 50.0%
!! GAATCAGATCCGTAACGGGT+CGG + chr1_3:73852842-73852861 None:intergenic 50.0%
GAGACATGTCTATGCCTCCA+CGG + chr1_3:73853278-73853297 None:intergenic 50.0%
GCGCCATAGCATAGAGAGTT+TGG + chr1_3:73853534-73853553 None:intergenic 50.0%
TGGCGCGATAGAGATGCTAT+TGG - chr1_3:73853548-73853567 Msa0139910:intron 50.0%
!! AGTATCTCCTAGGCTTGCTG+AGG - chr1_3:73853878-73853897 Msa0139910:intron 50.0%
TCAGTATCCTCAGCAAGCCT+AGG + chr1_3:73853888-73853907 None:intergenic 50.0%
!! AGGCTTGCTGAGGATACTGA+AGG - chr1_3:73853888-73853907 Msa0139910:intron 50.0%
TGATGCTTACTTGGACGGTC+TGG - chr1_3:73854552-73854571 Msa0139910:intron 50.0%
CACTCGACTGACAAAGAACG+AGG + chr1_3:73854620-73854639 None:intergenic 50.0%
CTCGTTCTTTGTCAGTCGAG+TGG - chr1_3:73854618-73854637 Msa0139910:intron 50.0%
ACGTAGATCAAGGGCTTCTG+GGG + chr1_3:73854680-73854699 None:intergenic 50.0%
CACGTAGATCAAGGGCTTCT+GGG + chr1_3:73854681-73854700 None:intergenic 50.0%
CAAGAAGCAAAGGCTCCTGT+GGG - chr1_3:73854897-73854916 Msa0139910:intron 50.0%
ATGTGATGGCTTACGGTGTC+GGG + chr1_3:73854985-73855004 None:intergenic 50.0%
GTCTGGCATGGTAGATACCT+GGG + chr1_3:73855525-73855544 None:intergenic 50.0%
! AATGCTTGAAGGGCTTGGTC+TGG + chr1_3:73855542-73855561 None:intergenic 50.0%
TGAATCCAGGAGGCTGTCAA+AGG + chr1_3:73855711-73855730 None:intergenic 50.0%
CTTAAGCTGGTCAGCAAGTG+AGG - chr1_3:73855752-73855771 Msa0139910:five_prime_UTR 50.0%
! CTGTTGGTTGGTGTCCTTGC+AGG - chr1_3:73852712-73852731 Msa0139910:intron 55.0%
TGCAGGGAACTTGTGCAAGC+AGG - chr1_3:73853738-73853757 Msa0139910:intron 55.0%
GCAGGGAACTTGTGCAAGCA+GGG - chr1_3:73853739-73853758 Msa0139910:intron 55.0%
CGAAGCGACACCAACACATG+AGG + chr1_3:73854312-73854331 None:intergenic 55.0%
TGCTTACTTGGACGGTCTGG+AGG - chr1_3:73854555-73854574 Msa0139910:intron 55.0%
CCACGTAGATCAAGGGCTTC+TGG + chr1_3:73854682-73854701 None:intergenic 55.0%
CCAGAAGCCCTTGATCTACG+TGG - chr1_3:73854679-73854698 Msa0139910:intron 55.0%
AGCCCTTGATCTACGTGGCA+AGG - chr1_3:73854684-73854703 Msa0139910:intron 55.0%
!! CTGGTAAGCCAGTGCTGCTT+GGG + chr1_3:73854821-73854840 None:intergenic 55.0%
CCACAGGAGCCTTTGCTTCT+TGG + chr1_3:73854899-73854918 None:intergenic 55.0%
CCAAGAAGCAAAGGCTCCTG+TGG - chr1_3:73854896-73854915 Msa0139910:intron 55.0%
! TAACGCTGGTTGAAGCCCAC+AGG + chr1_3:73854915-73854934 None:intergenic 55.0%
! ACGGTGTCGGGTCCAATAAG+AGG + chr1_3:73854973-73854992 None:intergenic 55.0%
GGTCTGGCATGGTAGATACC+TGG + chr1_3:73855526-73855545 None:intergenic 55.0%
! TTGAAGGGCTTGGTCTGGCA+TGG + chr1_3:73855537-73855556 None:intergenic 55.0%
GAAAGCCTTTGACAGCCTCC+TGG - chr1_3:73855703-73855722 Msa0139910:five_prime_UTR 55.0%
TCTCCTGCAGTGAATCCAGG+AGG + chr1_3:73855721-73855740 None:intergenic 55.0%
CCTTCTCCTGCAGTGAATCC+AGG + chr1_3:73855724-73855743 None:intergenic 55.0%
CCTGGATTCACTGCAGGAGA+AGG - chr1_3:73855721-73855740 Msa0139910:five_prime_UTR 55.0%
AGGCGTCACTAGCAACCCAG+CGG - chr1_3:73852884-73852903 Msa0139910:intron 60.0%
GGGACACATGCAGCTGTAGC+TGG + chr1_3:73853978-73853997 None:intergenic 60.0%
!! TTGGACGGTCTGGAGGCATC+TGG - chr1_3:73854562-73854581 Msa0139910:intron 60.0%
!! TGGACGGTCTGGAGGCATCT+GGG - chr1_3:73854563-73854582 Msa0139910:intron 60.0%
AGCAGTAGCCCAAGCAGCAC+TGG - chr1_3:73854810-73854829 Msa0139910:intron 60.0%
! GCTGGTAAGCCAGTGCTGCT+TGG + chr1_3:73854822-73854841 None:intergenic 60.0%
!! TCGATCACGGTGCTGTAGCC+AGG - chr1_3:73855564-73855583 Msa0139910:intron 60.0%
CAGCCTCCTGGATTCACTGC+AGG - chr1_3:73855715-73855734 Msa0139910:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 73850791 73856170 73850791 ID=Msa0139910;Name=Msa0139910
chr1_3 mRNA 73850791 73856170 73850791 ID=Msa0139910-mRNA-1;Parent=Msa0139910;Name=Msa0139910-mRNA-1;_AED=0.03;_eAED=0.03;_QI=1137|1|1|1|1|1|7|398|158
chr1_3 exon 73850791 73851434 73850791 ID=Msa0139910-mRNA-1:exon:25696;Parent=Msa0139910-mRNA-1
chr1_3 exon 73851971 73852153 73851971 ID=Msa0139910-mRNA-1:exon:25695;Parent=Msa0139910-mRNA-1
chr1_3 exon 73852256 73852444 73852256 ID=Msa0139910-mRNA-1:exon:25694;Parent=Msa0139910-mRNA-1
chr1_3 exon 73852918 73853218 73852918 ID=Msa0139910-mRNA-1:exon:25693;Parent=Msa0139910-mRNA-1
chr1_3 exon 73853756 73853805 73853756 ID=Msa0139910-mRNA-1:exon:25692;Parent=Msa0139910-mRNA-1
chr1_3 exon 73854056 73854227 73854056 ID=Msa0139910-mRNA-1:exon:25691;Parent=Msa0139910-mRNA-1
chr1_3 exon 73855698 73856170 73855698 ID=Msa0139910-mRNA-1:exon:25690;Parent=Msa0139910-mRNA-1
chr1_3 five_prime_UTR 73855698 73856170 73855698 ID=Msa0139910-mRNA-1:five_prime_utr;Parent=Msa0139910-mRNA-1
chr1_3 five_prime_UTR 73854056 73854227 73854056 ID=Msa0139910-mRNA-1:five_prime_utr;Parent=Msa0139910-mRNA-1
chr1_3 five_prime_UTR 73853756 73853805 73853756 ID=Msa0139910-mRNA-1:five_prime_utr;Parent=Msa0139910-mRNA-1
chr1_3 five_prime_UTR 73852918 73853218 73852918 ID=Msa0139910-mRNA-1:five_prime_utr;Parent=Msa0139910-mRNA-1
chr1_3 five_prime_UTR 73852304 73852444 73852304 ID=Msa0139910-mRNA-1:five_prime_utr;Parent=Msa0139910-mRNA-1
chr1_3 CDS 73852256 73852303 73852256 ID=Msa0139910-mRNA-1:cds;Parent=Msa0139910-mRNA-1
chr1_3 CDS 73851971 73852153 73851971 ID=Msa0139910-mRNA-1:cds;Parent=Msa0139910-mRNA-1
chr1_3 CDS 73851189 73851434 73851189 ID=Msa0139910-mRNA-1:cds;Parent=Msa0139910-mRNA-1
chr1_3 three_prime_UTR 73850791 73851188 73850791 ID=Msa0139910-mRNA-1:three_prime_utr;Parent=Msa0139910-mRNA-1
Gene Sequence

>Msa0139910

ATGCTTGAGAAAATTGGCACCCCAGAAGCCCTTGATCTACGTGGCAAGGCAGCAGTAGCCCAAGCAGCACTGGCTTACCAGCTATACCAAAAGAAATTTTCTGGCCCAAGGTGGGAAGCTCTAGTTAAAAAAGGGGCCAAGAAGCAAAGGCTCCTGTGGGCTTCAACCAGCGTTAAGAATCCTGCCTATCCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACCGTATCTACCATGCCAGACCAAGCCCTTCAAGCATTTATCGATCACGGTGCTGTAGCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACAATGCTATCCAGAAGTTGGGTATTGATTGGAGCTATGTTGGTTCACAGCTTGAATTGGAAGGAGTTGATTCATTCAAGAAAGCCTTTGACAGCCTCCTGGATTCACTGCAGGAGAAGGCAAAATCTCTTAAGCTGGTCAGCAAGTGA

Protein sequence

>Msa0139910

MLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFIDHGAVARTIDSNASEAEGIYNAIQKLGIDWSYVGSQLELEGVDSFKKAFDSLLDSLQEKAKSLKLVSK*