AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1045960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045960 MtrunA17_Chr7g0214741 98.646 443 6 0 1 443 1 443 0.0 892
Msa1045960 MtrunA17_Chr8g0385641 69.149 376 115 1 62 436 34 409 0.0 546
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045960 AT5G13420.1 79.657 408 83 0 35 442 30 437 0.0 658

Find 136 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACAGGAGCCTTTGCTTCT+TGG 0.121680 7_2:-6227026 None:intergenic
TTATATGTTGCTCCTCTTAT+TGG 0.160550 7_2:+6227088 Msa1045960:CDS
CCACGTAGATCAAGGGCTTC+TGG 0.196646 7_2:-6226809 None:intergenic
CATTGTTAGTCTGAAATTCT+TGG 0.237216 7_2:+6228034 Msa1045960:three_prime_UTR
GACAAGATGCTTGAGAAAAT+TGG 0.255255 7_2:+6226782 Msa1045960:CDS
AACAATGGCTTCTTCACTTT+CGG 0.265437 7_2:+6223192 Msa1045960:exon
CACAGATGATTTATCATTCT+AGG 0.278158 7_2:-6228002 None:intergenic
TTGGACGGTCTGGAGGCATC+TGG 0.296116 7_2:+6226692 Msa1045960:CDS
AGCAGTAGCCCAAGCAGCAC+TGG 0.319222 7_2:+6226940 Msa1045960:CDS
ACATAAAATGACATCAGATT+TGG 0.322012 7_2:-6228256 None:intergenic
TGCATGTGTCCCTTCAATTA+AGG 0.343064 7_2:+6226116 Msa1045960:CDS
CTTATTGAAAGTGGTGTTAG+AGG 0.347970 7_2:+6224994 Msa1045960:CDS
GATCTGGATCGAAGAGATTC+TGG 0.349569 7_2:-6223256 None:intergenic
TCCAATCAATACCCAACTTC+TGG 0.350106 7_2:-6227764 None:intergenic
TGAAGAACCGTCCTCTTTGC+AGG 0.353042 7_2:-6224898 None:intergenic
CACGTAGATCAAGGGCTTCT+GGG 0.353425 7_2:-6226808 None:intergenic
CAAGTGAGGTGTGAACTTTA+TGG 0.357425 7_2:+6227896 Msa1045960:exon
TTGGGCCAGAAAATTTCTTT+TGG 0.367465 7_2:-6226976 None:intergenic
GTGCTTACAATGATCAATTC+AGG 0.381631 7_2:+6225314 Msa1045960:CDS
TTGCATGGTGCAATTATTGC+AGG 0.385691 7_2:-6228124 None:intergenic
TTACAGCTTCATATCTTTCA+AGG 0.387825 7_2:-6226658 None:intergenic
CCTTCTCCTGCAGTGAATCC+AGG 0.391080 7_2:-6227851 None:intergenic
CGATAAATGCTTGAAGGGCT+TGG 0.394216 7_2:-6227674 None:intergenic
AACACCTTACTTATTTACTT+TGG 0.395720 7_2:+6222944 Msa1045960:five_prime_UTR
TTTCCATGTACTTTGTATGC+TGG 0.396835 7_2:+6228082 Msa1045960:three_prime_UTR
TCCAGAAGTTGGGTATTGAT+TGG 0.397913 7_2:+6227763 Msa1045960:CDS
AAGACATTGACAGTGCATAC+TGG 0.398567 7_2:+6225893 Msa1045960:CDS
TGTTGGTTCACAGCTTGAAT+TGG 0.398912 7_2:+6227791 Msa1045960:CDS
CTGGTAAGCCAGTGCTGCTT+GGG 0.405777 7_2:-6226948 None:intergenic
GGAATCTTAATATACACATT+GGG 0.407298 7_2:-6226084 None:intergenic
GAACCATAGAAGCTGCAAAA+TGG 0.407939 7_2:+6226040 Msa1045960:CDS
TAATCTCTGCCGACCCGTTA+CGG 0.408310 7_2:+6224960 Msa1045960:CDS
TGATGCTTACTTGGACGGTC+TGG 0.408914 7_2:+6226682 Msa1045960:CDS
GCTGGTAAGCCAGTGCTGCT+TGG 0.416878 7_2:-6226949 None:intergenic
CTAACACCACTTTCAATAAG+AGG 0.417790 7_2:-6224991 None:intergenic
AGCTGTAATTGATGCTTACT+TGG 0.425218 7_2:+6226673 Msa1045960:CDS
GCGATAACTTCCTTAATTGA+AGG 0.430140 7_2:-6226126 None:intergenic
TAACTAGAGCTTCCCACCTT+GGG 0.431657 7_2:-6226994 None:intergenic
TGCAAAATGGCTTCATAAAG+TGG 0.434093 7_2:+6226053 Msa1045960:CDS
AATAAGAGGAGCAACATATA+AGG 0.440098 7_2:-6227086 None:intergenic
GAAAGCCTTTGACAGCCTCC+TGG 0.444184 7_2:+6227833 Msa1045960:CDS
AAAGAAGCGCGGTTTGTGTT+TGG 0.445528 7_2:-6223232 None:intergenic
CGTGATCGATAAATGCTTGA+AGG 0.447597 7_2:-6227680 None:intergenic
TGCTCACAAACAGATGGAAA+TGG 0.453362 7_2:+6224871 Msa1045960:CDS
ATGTGATGGCTTACGGTGTC+GGG 0.454815 7_2:-6227112 None:intergenic
GGGACACATGCAGCTGTAGC+TGG 0.457283 7_2:-6226105 None:intergenic
CACGTTCACACTTATTCCAT+TGG 0.457925 7_2:-6226148 None:intergenic
TGCAGGGAACTTGTGCAAGC+AGG 0.463242 7_2:+6225868 Msa1045960:intron
AATAAAATATGTAAGGTTTG+AGG 0.465057 7_2:-6223013 None:intergenic
TTAATAAAAGACAGCGGCTA+AGG 0.467268 7_2:+6227957 Msa1045960:three_prime_UTR
TACAATGCTATCCAGAAGTT+GGG 0.474420 7_2:+6227753 Msa1045960:CDS
GTAATGTATGATGCCGCGTA+CGG 0.474741 7_2:+6227933 Msa1045960:three_prime_UTR
ATACAATGCTATCCAGAAGT+TGG 0.476685 7_2:+6227752 Msa1045960:CDS
AATGCTTGAAGGGCTTGGTC+TGG 0.476962 7_2:-6227669 None:intergenic
AGAGGAATCAGATCCGTAAC+GGG 0.477720 7_2:-6224973 None:intergenic
TTAACTAGAGCTTCCCACCT+TGG 0.478200 7_2:-6226995 None:intergenic
TCGATCACGGTGCTGTAGCC+AGG 0.478289 7_2:+6227694 Msa1045960:CDS
GTAAATAAGTAAGGTGTTCG+AGG 0.483157 7_2:-6222939 None:intergenic
GGAGCAACATATAAGGTGTC+AGG 0.483934 7_2:-6227079 None:intergenic
CCAAGAAGCAAAGGCTCCTG+TGG 0.487273 7_2:+6227026 Msa1045960:CDS
AACTCCAAAGTAAATAAGTA+AGG 0.490041 7_2:-6222948 None:intergenic
CTGATTCCTCTTATTGAAAG+TGG 0.490876 7_2:+6224985 Msa1045960:CDS
TGCATTTGAGTCTATTGTCC+TGG 0.491718 7_2:-6227712 None:intergenic
TTACCTTGCCACGTAGATCA+AGG 0.493289 7_2:-6226817 None:intergenic
GGTATTGATTGGAGCTATGT+TGG 0.495472 7_2:+6227774 Msa1045960:CDS
TCAATTTATGATCAAACTGA+TGG 0.501880 7_2:+6225961 Msa1045960:CDS
CCTCGTGAACTTAGCTCAGT+TGG 0.505210 7_2:-6223052 None:intergenic
CGATAACTTCCTTAATTGAA+GGG 0.507817 7_2:-6226125 None:intergenic
ATTAAGGAAGTTATCGCCAA+TGG 0.509849 7_2:+6226132 Msa1045960:CDS
TAATGTATGATGCCGCGTAC+GGG 0.510892 7_2:+6227934 Msa1045960:three_prime_UTR
CAGCCTCCTGGATTCACTGC+AGG 0.514881 7_2:+6227845 Msa1045960:CDS
TGGAATCTTAATATACACAT+TGG 0.517086 7_2:-6226085 None:intergenic
TTTCTGTTGAAGTATCTCCT+AGG 0.521652 7_2:+6225998 Msa1045960:CDS
AGAAACAAGGGCAGAGTCCA+TGG 0.521731 7_2:+6224932 Msa1045960:CDS
TATAAGGTGTCAGGATAGGC+AGG 0.522356 7_2:-6227070 None:intergenic
CATGATCTTTATGAGAAACA+AGG 0.525914 7_2:+6224919 Msa1045960:CDS
CCTGGATTCACTGCAGGAGA+AGG 0.526429 7_2:+6227851 Msa1045960:CDS
TAATAAAAGACAGCGGCTAA+GGG 0.533896 7_2:+6227958 Msa1045960:three_prime_UTR
GACTGTCCGATCTAAATCAA+TGG 0.535269 7_2:+6228158 Msa1045960:three_prime_UTR
AGACATTGACAGTGCATACT+GGG 0.538449 7_2:+6225894 Msa1045960:CDS
CTCGTTCTTTGTCAGTCGAG+TGG 0.539822 7_2:+6226748 Msa1045960:CDS
TAACGCTGGTTGAAGCCCAC+AGG 0.542262 7_2:-6227042 None:intergenic
GAAGGCAAAATCTCTTAAGC+TGG 0.547270 7_2:+6227869 Msa1045960:CDS
TACAGCTTCATATCTTTCAA+GGG 0.547625 7_2:-6226657 None:intergenic
GCAGGGAACTTGTGCAAGCA+GGG 0.547808 7_2:+6225869 Msa1045960:intron
ACCTCAAAGAAGTTACAAAA+CGG 0.548564 7_2:-6223366 None:intergenic
AATGTGATGGCTTACGGTGT+CGG 0.552602 7_2:-6227113 None:intergenic
GTAATTGATGCTTACTTGGA+CGG 0.553368 7_2:+6226677 Msa1045960:CDS
TGGACGGTCTGGAGGCATCT+GGG 0.554082 7_2:+6226693 Msa1045960:CDS
GGTTCACAGCTTGAATTGGA+AGG 0.554895 7_2:+6227795 Msa1045960:CDS
CTTAAGCTGGTCAGCAAGTG+AGG 0.557674 7_2:+6227882 Msa1045960:CDS
AAACCAGCATACAAAGTACA+TGG 0.559423 7_2:-6228085 None:intergenic
TACCTTGCCACGTAGATCAA+GGG 0.561590 7_2:-6226816 None:intergenic
TCAGTATCCTCAGCAAGCCT+AGG 0.564022 7_2:-6226015 None:intergenic
CCTCTGCCATTGATTTAGAT+CGG 0.567391 7_2:-6228164 None:intergenic
TGCTTACTTGGACGGTCTGG+AGG 0.568623 7_2:+6226685 Msa1045960:CDS
TGAATCCAGGAGGCTGTCAA+AGG 0.570972 7_2:-6227838 None:intergenic
AGTCGAGATTTAAAATTGCA+TGG 0.571287 7_2:-6228139 None:intergenic
CTTCAAGCATTTATCGATCA+CGG 0.571494 7_2:+6227681 Msa1045960:CDS
TCAAATGCATCTGAAGCTGA+AGG 0.573568 7_2:+6227726 Msa1045960:CDS
TTGAAGGGCTTGGTCTGGCA+TGG 0.574976 7_2:-6227664 None:intergenic
AACATATAAGGTGTCAGGAT+AGG 0.576598 7_2:-6227074 None:intergenic
ACGGTGTCGGGTCCAATAAG+AGG 0.578637 7_2:-6227100 None:intergenic
GTGAACTTAGCTCAGTTGGT+TGG 0.579536 7_2:-6223048 None:intergenic
ATTAGATGCTCACAAACAGA+TGG 0.579685 7_2:+6224865 Msa1045960:CDS
GATCAAACTGATGGAGGTGA+TGG 0.584623 7_2:+6225970 Msa1045960:CDS
CCGATCTAAATCAATGGCAG+AGG 0.586545 7_2:+6228164 Msa1045960:three_prime_UTR
ACGTAGATCAAGGGCTTCTG+GGG 0.588870 7_2:-6226807 None:intergenic
GTGATCGATAAATGCTTGAA+GGG 0.588921 7_2:-6227679 None:intergenic
AGCCCTTGATCTACGTGGCA+AGG 0.589288 7_2:+6226814 Msa1045960:CDS
AAGAGGAATCAGATCCGTAA+CGG 0.596662 7_2:-6224974 None:intergenic
CAAGAAGCAAAGGCTCCTGT+GGG 0.597921 7_2:+6227027 Msa1045960:CDS
TGCATGGTGCAATTATTGCA+GGG 0.598726 7_2:-6228123 None:intergenic
ATGATCTTTATGAGAAACAA+GGG 0.602950 7_2:+6224920 Msa1045960:CDS
ATTTATGATCAAACTGATGG+AGG 0.617182 7_2:+6225964 Msa1045960:CDS
TGGAGTTCCTGCAAAGAGGA+CGG 0.623273 7_2:+6224891 Msa1045960:CDS
ATACTGGGAACTTGTAGTGA+AGG 0.629191 7_2:+6225909 Msa1045960:CDS
TACAACTATCTCGTTCACGC+TGG 0.630000 7_2:-6223155 None:intergenic
AGGCTTGCTGAGGATACTGA+AGG 0.632568 7_2:+6226018 Msa1045960:CDS
CGGCAGAGATTATCATACCA+TGG 0.638956 7_2:-6224949 None:intergenic
GAATCTTAATATACACATTG+GGG 0.640842 7_2:-6226083 None:intergenic
AGAAACAATGCTTATACACA+TGG 0.643168 7_2:+6222904 None:intergenic
GAAATGGAGTTCCTGCAAAG+AGG 0.646124 7_2:+6224887 Msa1045960:CDS
AATAAAAGACAGCGGCTAAG+GGG 0.653569 7_2:+6227959 Msa1045960:three_prime_UTR
GAATCAGATCCGTAACGGGT+CGG 0.659162 7_2:-6224969 None:intergenic
CAACACTTGTGACTCTAGAG+AGG 0.660116 7_2:-6226724 None:intergenic
ATAGGCAGGATTCTTAACGC+TGG 0.660124 7_2:-6227056 None:intergenic
AGTATCTCCTAGGCTTGCTG+AGG 0.671909 7_2:+6226008 Msa1045960:CDS
GAGATTCTGGTAAAGAAGCG+CGG 0.678266 7_2:-6223243 None:intergenic
CCAACTGAGCTAAGTTCACG+AGG 0.681889 7_2:+6223052 Msa1045960:five_prime_UTR
CACTCGACTGACAAAGAACG+AGG 0.684880 7_2:-6226747 None:intergenic
TCTCCTGCAGTGAATCCAGG+AGG 0.685827 7_2:-6227848 None:intergenic
TTCTTAAAGAAGAAGCAGAG+AGG 0.689999 7_2:-6223330 None:intergenic
CCAGAAGCCCTTGATCTACG+TGG 0.710968 7_2:+6226809 Msa1045960:CDS
TACGGGTTAATAAAAGACAG+CGG 0.756696 7_2:+6227951 Msa1045960:three_prime_UTR
AGGCGTCACTAGCAACCCAG+CGG 0.791833 7_2:+6225014 Msa1045960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTATTAAAATTTT+TGG + chr7_2:6224107-6224126 Msa1045960:intron 0.0%
!!! ATTAAATACTTTTAATTTTC+AGG + chr7_2:6224060-6224079 Msa1045960:intron 10.0%
!! ACAAATTATTTAAAAATTCA+GGG - chr7_2:6227377-6227396 None:intergenic 10.0%
!! TACAAATTATTTAAAAATTC+AGG - chr7_2:6227378-6227397 None:intergenic 10.0%
!!! ATTTTTAAATAATTTGTATC+TGG + chr7_2:6227380-6227399 Msa1045960:intron 10.0%
!!! TTTTTAAATAATTTGTATCT+GGG + chr7_2:6227381-6227400 Msa1045960:intron 10.0%
!! GATTAAAAAACAATTATTTA+AGG + chr7_2:6227453-6227472 Msa1045960:intron 10.0%
!!! ATGTTTTAGTTTTAATATTA+TGG + chr7_2:6228275-6228294 Msa1045960:three_prime_UTR 10.0%
!! GCATAAAAATAAAATATGTA+AGG - chr7_2:6223023-6223042 None:intergenic 15.0%
!! TCTATATGACATTATTTAAT+TGG - chr7_2:6223676-6223695 None:intergenic 15.0%
!! ATATATATATAGTTGCATTA+TGG + chr7_2:6223983-6224002 Msa1045960:intron 15.0%
!! GTAAAAAAAAATTACACTAT+CGG + chr7_2:6224028-6224047 Msa1045960:intron 15.0%
!!! AAATTTGAAAGAAAAACTTT+TGG - chr7_2:6225362-6225381 None:intergenic 15.0%
!! TATAAAAAAAATAGAAATCG+AGG - chr7_2:6225727-6225746 None:intergenic 15.0%
!!! TCGATTTCTATTTTTTTTAT+AGG + chr7_2:6225726-6225745 Msa1045960:intron 15.0%
!!! ATTTCTATTTTTTTTATAGG+AGG + chr7_2:6225729-6225748 Msa1045960:intron 15.0%
!!! TTTCTATTTTTTTTATAGGA+GGG + chr7_2:6225730-6225749 Msa1045960:intron 15.0%
!!! AAGATCTAAAATTATACTTA+AGG - chr7_2:6225770-6225789 None:intergenic 15.0%
!!! TTATTATGTTGATTATATCA+AGG - chr7_2:6226289-6226308 None:intergenic 15.0%
!! TGATATAATCAACATAATAA+TGG + chr7_2:6226289-6226308 Msa1045960:intron 15.0%
!! GATATAATCAACATAATAAT+GGG + chr7_2:6226290-6226309 Msa1045960:intron 15.0%
!!! GACAATTTTTTCAAAATTTA+CGG + chr7_2:6227426-6227445 Msa1045960:intron 15.0%
!! AAAATGTTTAATTAATCTGA+AGG - chr7_2:6227538-6227557 None:intergenic 15.0%
!!! AGTAGTATACTCATTTTTTT+TGG + chr7_2:6222973-6222992 Msa1045960:five_prime_UTR 20.0%
!! AATAAAATATGTAAGGTTTG+AGG - chr7_2:6223016-6223035 None:intergenic 20.0%
!!! ACAATTTTCATTTTCAACAA+TGG + chr7_2:6223177-6223196 Msa1045960:exon 20.0%
!!! TTTTGATTTTTATACACTGA+CGG + chr7_2:6223558-6223577 Msa1045960:intron 20.0%
!! TAATGTCATATAGATATTTG+TGG + chr7_2:6223682-6223701 Msa1045960:intron 20.0%
!! AGAGATTAATCTCTAAATAA+TGG + chr7_2:6223797-6223816 Msa1045960:intron 20.0%
!!! CATGAAATTTGTTTTTTCAT+TGG + chr7_2:6224168-6224187 Msa1045960:intron 20.0%
!! AGCTTAACATTAAAGTTAAA+GGG - chr7_2:6224458-6224477 None:intergenic 20.0%
!! AAGCTTAACATTAAAGTTAA+AGG - chr7_2:6224459-6224478 None:intergenic 20.0%
!! TCATATTCATTATAAACTTG+AGG - chr7_2:6224773-6224792 None:intergenic 20.0%
!!! ATTTTTGAAACATTATTCCT+AGG - chr7_2:6225147-6225166 None:intergenic 20.0%
!! AATGTTTCAAAAATCAATAC+TGG + chr7_2:6225153-6225172 Msa1045960:intron 20.0%
!! AAACTAAATATACTTTGTGA+AGG - chr7_2:6225492-6225511 None:intergenic 20.0%
!!! AAAGTATATTTAGTTTAGCT+TGG + chr7_2:6225496-6225515 Msa1045960:intron 20.0%
!!! TTCTATTTTTTTTATAGGAG+GGG + chr7_2:6225731-6225750 Msa1045960:intron 20.0%
!! AAAATAGAACATTAAACTCA+CGG - chr7_2:6225815-6225834 None:intergenic 20.0%
!!! AATGTTCTATTTTTAATTCG+TGG + chr7_2:6225822-6225841 Msa1045960:intron 20.0%
!! ATAGATTTATGAACTATTTG+AGG + chr7_2:6227215-6227234 Msa1045960:intron 20.0%
!! AAAAAAAAAAACCAAGTTCA+GGG - chr7_2:6227315-6227334 None:intergenic 20.0%
!! TAAAAAAAAAAACCAAGTTC+AGG - chr7_2:6227316-6227335 None:intergenic 20.0%
! AACACCTTACTTATTTACTT+TGG + chr7_2:6222944-6222963 Msa1045960:five_prime_UTR 25.0%
! AACTCCAAAGTAAATAAGTA+AGG - chr7_2:6222951-6222970 None:intergenic 25.0%
!!! TATACTCATTTTTTTTGGAG+TGG + chr7_2:6222978-6222997 Msa1045960:five_prime_UTR 25.0%
! ACAGTCATTGGATATTTAAT+TGG - chr7_2:6223608-6223627 None:intergenic 25.0%
! CAATTATTGTATACAGTCAT+TGG - chr7_2:6223620-6223639 None:intergenic 25.0%
! TAAGAACTAACATGTAAAAG+TGG + chr7_2:6223715-6223734 Msa1045960:intron 25.0%
! ACTCTCTACAATTATCTATT+TGG - chr7_2:6223913-6223932 None:intergenic 25.0%
!!! ACAACTTAATTTGTAGCTTA+CGG + chr7_2:6224205-6224224 Msa1045960:intron 25.0%
! AAAATAAAGTCAAATTGCGT+AGG + chr7_2:6224282-6224301 Msa1045960:intron 25.0%
! TTGTCAGAATAATACTTAGT+GGG + chr7_2:6224477-6224496 Msa1045960:intron 25.0%
! TCAAATATACACCAAGTATA+TGG - chr7_2:6224648-6224667 None:intergenic 25.0%
!!! TACTTGGTGTATATTTGAAT+TGG + chr7_2:6224650-6224669 Msa1045960:intron 25.0%
! ATTCATTATAAACTTGAGGT+TGG - chr7_2:6224769-6224788 None:intergenic 25.0%
! ATGATCTTTATGAGAAACAA+GGG + chr7_2:6224920-6224939 Msa1045960:CDS 25.0%
! TAACATAAATTATTACCGCT+GGG - chr7_2:6225032-6225051 None:intergenic 25.0%
! ATAACATAAATTATTACCGC+TGG - chr7_2:6225033-6225052 None:intergenic 25.0%
! GTAATAATGAAAGACTTGTA+TGG + chr7_2:6225079-6225098 Msa1045960:intron 25.0%
!!! TTACAACTCTTAAAAGTGTT+TGG - chr7_2:6225196-6225215 None:intergenic 25.0%
! TGGTATTAGTATATGATTGA+TGG - chr7_2:6225342-6225361 None:intergenic 25.0%
! AAATAGAACATTAAACTCAC+GGG - chr7_2:6225814-6225833 None:intergenic 25.0%
! TAAAATTACATGATCATGCA+GGG + chr7_2:6225852-6225871 Msa1045960:intron 25.0%
! TCAATTTATGATCAAACTGA+TGG + chr7_2:6225961-6225980 Msa1045960:CDS 25.0%
! GAATCTTAATATACACATTG+GGG - chr7_2:6226086-6226105 None:intergenic 25.0%
! GGAATCTTAATATACACATT+GGG - chr7_2:6226087-6226106 None:intergenic 25.0%
! TGGAATCTTAATATACACAT+TGG - chr7_2:6226088-6226107 None:intergenic 25.0%
! TATGTTAACATGCTATAAGT+TGG + chr7_2:6226233-6226252 Msa1045960:intron 25.0%
! ATGTTAACATGCTATAAGTT+GGG + chr7_2:6226234-6226253 Msa1045960:intron 25.0%
!! ATAATCAACATAATAATGGG+TGG + chr7_2:6226293-6226312 Msa1045960:intron 25.0%
!!! TCACTTTTCCAAATTATTAC+TGG - chr7_2:6226409-6226428 None:intergenic 25.0%
! CTTCTAAATGAAGATGTATT+TGG - chr7_2:6226492-6226511 None:intergenic 25.0%
! ACAAATGTATATTTAGACTC+CGG - chr7_2:6226618-6226637 None:intergenic 25.0%
!! GTCATGACATTGAATTTTAT+AGG + chr7_2:6226916-6226935 Msa1045960:intron 25.0%
!! AAAATTTCTTTTGGTATAGC+TGG - chr7_2:6226970-6226989 None:intergenic 25.0%
!! CTATACCAAAAGAAATTTTC+TGG + chr7_2:6226971-6226990 Msa1045960:CDS 25.0%
! GGATTATTGAAAAAATGTGA+TGG - chr7_2:6227129-6227148 None:intergenic 25.0%
! TTCAATAATCCATTTGCTTA+TGG + chr7_2:6227138-6227157 Msa1045960:intron 25.0%
! AAACTGAAGAAAATACTACT+TGG - chr7_2:6227185-6227204 None:intergenic 25.0%
!! CTATTTGAGGATTTTCAAAA+AGG + chr7_2:6227228-6227247 Msa1045960:intron 25.0%
!! GAACATTTTTGACAATTTCA+GGG - chr7_2:6227284-6227303 None:intergenic 25.0%
!! TGAACATTTTTGACAATTTC+AGG - chr7_2:6227285-6227304 None:intergenic 25.0%
! CTTGTTAGGAATTTGTAATT+AGG - chr7_2:6227480-6227499 None:intergenic 25.0%
! CTTGATTATGTTAACAAACT+TGG + chr7_2:6227580-6227599 Msa1045960:intron 25.0%
! ACATAAAATGACATCAGATT+TGG - chr7_2:6228259-6228278 None:intergenic 25.0%
ACCTCAAAGAAGTTACAAAA+CGG - chr7_2:6223369-6223388 None:intergenic 30.0%
!!! TTCATGCTTATTTTTGCATG+CGG + chr7_2:6223419-6223438 Msa1045960:intron 30.0%
GATTAATTTCTATCCACTGA+CGG + chr7_2:6223846-6223865 Msa1045960:intron 30.0%
TCTATTTGGCATCATTTGAT+TGG - chr7_2:6223899-6223918 None:intergenic 30.0%
GCATTATGGAATGATTTGAT+TGG + chr7_2:6223997-6224016 Msa1045960:intron 30.0%
!!! GTTTTTTCATTGGTTCTGTT+TGG + chr7_2:6224178-6224197 Msa1045960:intron 30.0%
TTGGCTTATTTACTGACATA+AGG - chr7_2:6224426-6224445 None:intergenic 30.0%
ATTAAAGTTAAAGGGCTGTT+TGG - chr7_2:6224450-6224469 None:intergenic 30.0%
CTTGTCAGAATAATACTTAG+TGG + chr7_2:6224476-6224495 Msa1045960:intron 30.0%
ACAGTATAACACCATGATTT+CGG - chr7_2:6224603-6224622 None:intergenic 30.0%
ATATACACCAAGTATATGGT+TGG - chr7_2:6224644-6224663 None:intergenic 30.0%
TTGGTGTATATTTGAATTGG+TGG + chr7_2:6224653-6224672 Msa1045960:intron 30.0%
! TGTTGCTATTGTCAAAATCA+TGG + chr7_2:6224725-6224744 Msa1045960:intron 30.0%
! CCTCAATATAAATGTCGATT+AGG - chr7_2:6224811-6224830 None:intergenic 30.0%
CCTAATCGACATTTATATTG+AGG + chr7_2:6224808-6224827 Msa1045960:intron 30.0%
CATGATCTTTATGAGAAACA+AGG + chr7_2:6224919-6224938 Msa1045960:CDS 30.0%
! CGAAGATATTTTTCTATCCT+AGG + chr7_2:6225127-6225146 Msa1045960:intron 30.0%
TGTTGTCAAATTGTAGATGT+AGG - chr7_2:6225600-6225619 None:intergenic 30.0%
TCACGGGAATATAATACTTA+AGG - chr7_2:6225798-6225817 None:intergenic 30.0%
!!! TCTATTTTTAATTCGTGGTG+TGG + chr7_2:6225827-6225846 Msa1045960:intron 30.0%
CTAAAATTACATGATCATGC+AGG + chr7_2:6225851-6225870 Msa1045960:intron 30.0%
ATTTATGATCAAACTGATGG+AGG + chr7_2:6225964-6225983 Msa1045960:CDS 30.0%
CGATAACTTCCTTAATTGAA+GGG - chr7_2:6226128-6226147 None:intergenic 30.0%
! TGTTGATTATATCAAGGACA+AGG - chr7_2:6226283-6226302 None:intergenic 30.0%
TGTTGACACCAGTAATAATT+TGG + chr7_2:6226398-6226417 Msa1045960:intron 30.0%
GGAGTCTAAATATACATTTG+TGG + chr7_2:6226617-6226636 Msa1045960:intron 30.0%
TACAGCTTCATATCTTTCAA+GGG - chr7_2:6226660-6226679 None:intergenic 30.0%
TTACAGCTTCATATCTTTCA+AGG - chr7_2:6226661-6226680 None:intergenic 30.0%
GCAATAAAGAAAAGAGTAAG+CGG - chr7_2:6226843-6226862 None:intergenic 30.0%
! TTATTGCCAATTTTTGCGTT+TGG + chr7_2:6226856-6226875 Msa1045960:intron 30.0%
TCAAATCCAAACGCAAAAAT+TGG - chr7_2:6226865-6226884 None:intergenic 30.0%
AATAAGAGGAGCAACATATA+AGG - chr7_2:6227089-6227108 None:intergenic 30.0%
TTATATGTTGCTCCTCTTAT+TGG + chr7_2:6227088-6227107 Msa1045960:CDS 30.0%
TGAAAAAATGTGATGGCTTA+CGG - chr7_2:6227122-6227141 None:intergenic 30.0%
CCATAATAACCATAAGCAAA+TGG - chr7_2:6227150-6227169 None:intergenic 30.0%
CCATTTGCTTATGGTTATTA+TGG + chr7_2:6227147-6227166 Msa1045960:intron 30.0%
TACAAATTCCTAACAAGTTC+AGG + chr7_2:6227483-6227502 Msa1045960:intron 30.0%
ACAAATTCCTAACAAGTTCA+GGG + chr7_2:6227484-6227503 Msa1045960:intron 30.0%
! ATTAAATCCCTGAACTTGTT+AGG - chr7_2:6227494-6227513 None:intergenic 30.0%
TCTTTAATGAACATCTCGTT+AGG + chr7_2:6227557-6227576 Msa1045960:intron 30.0%
GTAATGTTAGTTCAGGTATT+AGG - chr7_2:6227618-6227637 None:intergenic 30.0%
CACAGATGATTTATCATTCT+AGG - chr7_2:6228005-6228024 None:intergenic 30.0%
! CATTGTTAGTCTGAAATTCT+TGG + chr7_2:6228034-6228053 Msa1045960:three_prime_UTR 30.0%
!!! TACTTTGTATGCTGGTTTTT+AGG + chr7_2:6228090-6228109 Msa1045960:three_prime_UTR 30.0%
!!! ACTTTGTATGCTGGTTTTTA+GGG + chr7_2:6228091-6228110 Msa1045960:three_prime_UTR 30.0%
! AGTCGAGATTTAAAATTGCA+TGG - chr7_2:6228142-6228161 None:intergenic 30.0%
! GTAAATAAGTAAGGTGTTCG+AGG - chr7_2:6222942-6222961 None:intergenic 35.0%
AACAATGGCTTCTTCACTTT+CGG + chr7_2:6223192-6223211 Msa1045960:exon 35.0%
TTCTTAAAGAAGAAGCAGAG+AGG - chr7_2:6223333-6223352 None:intergenic 35.0%
! ACCGTTTTGTAACTTCTTTG+AGG + chr7_2:6223365-6223384 Msa1045960:CDS 35.0%
!!! CGATGTGTTTTGTTGTTGTA+AGG + chr7_2:6223521-6223540 Msa1045960:intron 35.0%
! GTTGTAAGGATGTGTTTTGT+TGG + chr7_2:6223535-6223554 Msa1045960:intron 35.0%
GAAAATATTTACACCGTCAG+TGG - chr7_2:6223862-6223881 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTAAGT+TGG + chr7_2:6224310-6224329 Msa1045960:intron 35.0%
TCAGAATAATACTTAGTGGG+TGG + chr7_2:6224480-6224499 Msa1045960:intron 35.0%
TGGTGAGTTATGCAAAATCA+CGG + chr7_2:6224673-6224692 Msa1045960:intron 35.0%
GTCGATTAGGAAACAAAACA+AGG - chr7_2:6224798-6224817 None:intergenic 35.0%
ATTAGATGCTCACAAACAGA+TGG + chr7_2:6224865-6224884 Msa1045960:CDS 35.0%
CTGATTCCTCTTATTGAAAG+TGG + chr7_2:6224985-6225004 Msa1045960:CDS 35.0%
CTAACACCACTTTCAATAAG+AGG - chr7_2:6224994-6225013 None:intergenic 35.0%
! CTTATTGAAAGTGGTGTTAG+AGG + chr7_2:6224994-6225013 Msa1045960:CDS 35.0%
ATATCTTCGCACAAGTAGAA+CGG - chr7_2:6225116-6225135 None:intergenic 35.0%
GTGCTTACAATGATCAATTC+AGG + chr7_2:6225314-6225333 Msa1045960:CDS 35.0%
CAATAAAGTAGAGTAAACCG+TGG + chr7_2:6225388-6225407 Msa1045960:intron 35.0%
GAGTAATACAACGATTATGC+AGG - chr7_2:6225454-6225473 None:intergenic 35.0%
TAGCTTGGTAAACTACACAA+AGG + chr7_2:6225511-6225530 Msa1045960:intron 35.0%
! TTTCTGTTGAAGTATCTCCT+AGG + chr7_2:6225998-6226017 Msa1045960:CDS 35.0%
TGCAAAATGGCTTCATAAAG+TGG + chr7_2:6226053-6226072 Msa1045960:CDS 35.0%
GCGATAACTTCCTTAATTGA+AGG - chr7_2:6226129-6226148 None:intergenic 35.0%
ATTAAGGAAGTTATCGCCAA+TGG + chr7_2:6226132-6226151 Msa1045960:CDS 35.0%
GTTATGCTAGTTAGAAGTGA+GGG + chr7_2:6226323-6226342 Msa1045960:intron 35.0%
TTGAATGTAACCTCATGTGT+TGG + chr7_2:6226429-6226448 Msa1045960:intron 35.0%
! ATTTGGTGAATGACATGTGT+CGG - chr7_2:6226475-6226494 None:intergenic 35.0%
!! GATTACTTTTACCATGTTGC+CGG + chr7_2:6226596-6226615 Msa1045960:intron 35.0%
AGCTGTAATTGATGCTTACT+TGG + chr7_2:6226673-6226692 Msa1045960:CDS 35.0%
GTAATTGATGCTTACTTGGA+CGG + chr7_2:6226677-6226696 Msa1045960:CDS 35.0%
GACAAGATGCTTGAGAAAAT+TGG + chr7_2:6226782-6226801 Msa1045960:CDS 35.0%
! TTGGGCCAGAAAATTTCTTT+TGG - chr7_2:6226979-6226998 None:intergenic 35.0%
!! AAAAGAAATTTTCTGGCCCA+AGG + chr7_2:6226978-6226997 Msa1045960:CDS 35.0%
! TGGGAAGCTCTAGTTAAAAA+AGG + chr7_2:6227001-6227020 Msa1045960:CDS 35.0%
! GGGAAGCTCTAGTTAAAAAA+GGG + chr7_2:6227002-6227021 Msa1045960:CDS 35.0%
! GGAAGCTCTAGTTAAAAAAG+GGG + chr7_2:6227003-6227022 Msa1045960:CDS 35.0%
! AACATATAAGGTGTCAGGAT+AGG - chr7_2:6227077-6227096 None:intergenic 35.0%
TTCATTTAGATCCCTGAACT+TGG + chr7_2:6227301-6227320 Msa1045960:intron 35.0%
TGAGAAGGTAATGTTAGTTC+AGG - chr7_2:6227625-6227644 None:intergenic 35.0%
GTGATCGATAAATGCTTGAA+GGG - chr7_2:6227682-6227701 None:intergenic 35.0%
CTTCAAGCATTTATCGATCA+CGG + chr7_2:6227681-6227700 Msa1045960:CDS 35.0%
ATACAATGCTATCCAGAAGT+TGG + chr7_2:6227752-6227771 Msa1045960:CDS 35.0%
TACAATGCTATCCAGAAGTT+GGG + chr7_2:6227753-6227772 Msa1045960:CDS 35.0%
! TACGGGTTAATAAAAGACAG+CGG + chr7_2:6227951-6227970 Msa1045960:three_prime_UTR 35.0%
TTAATAAAAGACAGCGGCTA+AGG + chr7_2:6227957-6227976 Msa1045960:three_prime_UTR 35.0%
TAATAAAAGACAGCGGCTAA+GGG + chr7_2:6227958-6227977 Msa1045960:three_prime_UTR 35.0%
TTTCCATGTACTTTGTATGC+TGG + chr7_2:6228082-6228101 Msa1045960:three_prime_UTR 35.0%
AAACCAGCATACAAAGTACA+TGG - chr7_2:6228088-6228107 None:intergenic 35.0%
! AGCTAAGAAGCTCGTTTTGA+TGG - chr7_2:6223281-6223300 None:intergenic 40.0%
AGTTAAAGGGCTGTTTGGAT+TGG - chr7_2:6224445-6224464 None:intergenic 40.0%
GCTATTACAAACCGACTGTA+AGG - chr7_2:6224512-6224531 None:intergenic 40.0%
!! ACAGTCGGTTTGTAATAGCA+CGG + chr7_2:6224513-6224532 Msa1045960:intron 40.0%
ACGGTGTTTGACAAAGTTAC+AGG + chr7_2:6224532-6224551 Msa1045960:intron 40.0%
CGGTGTTTGACAAAGTTACA+GGG + chr7_2:6224533-6224552 Msa1045960:intron 40.0%
GGTGTTTGACAAAGTTACAG+GGG + chr7_2:6224534-6224553 Msa1045960:intron 40.0%
TTTCGGCAAAAGCTGCAATT+TGG - chr7_2:6224586-6224605 None:intergenic 40.0%
! CAAGTATATGGTTGGATTGG+TGG - chr7_2:6224636-6224655 None:intergenic 40.0%
CACCAATCCAACCATATACT+TGG + chr7_2:6224634-6224653 Msa1045960:intron 40.0%
CACCAAGTATATGGTTGGAT+TGG - chr7_2:6224639-6224658 None:intergenic 40.0%
TGAGTTATGCAAAATCACGG+TGG + chr7_2:6224676-6224695 Msa1045960:intron 40.0%
TGAGGCAAACATTTGACTGT+TGG + chr7_2:6224826-6224845 Msa1045960:intron 40.0%
GCAAACATTTGACTGTTGGT+TGG + chr7_2:6224830-6224849 Msa1045960:intron 40.0%
TGCTCACAAACAGATGGAAA+TGG + chr7_2:6224871-6224890 Msa1045960:CDS 40.0%
AAGAGGAATCAGATCCGTAA+CGG - chr7_2:6224977-6224996 None:intergenic 40.0%
CTGCAATCATGTGGTATAGA+CGG - chr7_2:6225266-6225285 None:intergenic 40.0%
CTGAAAGATCTGCAATCATG+TGG - chr7_2:6225275-6225294 None:intergenic 40.0%
TAAAGTAGAGTAAACCGTGG+AGG + chr7_2:6225391-6225410 Msa1045960:intron 40.0%
AAGGTCAATGTTGTCAATCC+CGG + chr7_2:6225530-6225549 Msa1045960:intron 40.0%
AATCGCAATTCTCTGTGATC+CGG - chr7_2:6225552-6225571 None:intergenic 40.0%
GTGTACTAAATCGTGTATCG+CGG + chr7_2:6225622-6225641 Msa1045960:intron 40.0%
GCATAGAGAGTTTGGAGAAA+CGG - chr7_2:6225656-6225675 None:intergenic 40.0%
TCTCCAAACTCTCTATGCTA+TGG + chr7_2:6225658-6225677 Msa1045960:intron 40.0%
AAGACATTGACAGTGCATAC+TGG + chr7_2:6225893-6225912 Msa1045960:CDS 40.0%
AGACATTGACAGTGCATACT+GGG + chr7_2:6225894-6225913 Msa1045960:CDS 40.0%
ATACTGGGAACTTGTAGTGA+AGG + chr7_2:6225909-6225928 Msa1045960:CDS 40.0%
GAACCATAGAAGCTGCAAAA+TGG + chr7_2:6226040-6226059 Msa1045960:CDS 40.0%
!! AAGCCATTTTGCAGCTTCTA+TGG - chr7_2:6226046-6226065 None:intergenic 40.0%
TGCATGTGTCCCTTCAATTA+AGG + chr7_2:6226116-6226135 Msa1045960:CDS 40.0%
CACGTTCACACTTATTCCAT+TGG - chr7_2:6226151-6226170 None:intergenic 40.0%
!! CATAATAATGGGTGGTAGCA+AGG + chr7_2:6226301-6226320 Msa1045960:intron 40.0%
GGTTATGCTAGTTAGAAGTG+AGG + chr7_2:6226322-6226341 Msa1045960:intron 40.0%
GTCAATATCAGTGATGTGTC+TGG - chr7_2:6226377-6226396 None:intergenic 40.0%
ATATTTAGACTCCGGCAACA+TGG - chr7_2:6226610-6226629 None:intergenic 40.0%
TATCTGGGTCCTTAAAGTCA+GGG + chr7_2:6227396-6227415 Msa1045960:intron 40.0%
TCATCAAGTCCCTGACTTTA+AGG - chr7_2:6227408-6227427 None:intergenic 40.0%
TACCTTCTCATTTACTTCCC+AGG + chr7_2:6227635-6227654 Msa1045960:intron 40.0%
TACCTGGGAAGTAAATGAGA+AGG - chr7_2:6227640-6227659 None:intergenic 40.0%
CGTGATCGATAAATGCTTGA+AGG - chr7_2:6227683-6227702 None:intergenic 40.0%
TGCATTTGAGTCTATTGTCC+TGG - chr7_2:6227715-6227734 None:intergenic 40.0%
! TCAAATGCATCTGAAGCTGA+AGG + chr7_2:6227726-6227745 Msa1045960:CDS 40.0%
!! TCCAGAAGTTGGGTATTGAT+TGG + chr7_2:6227763-6227782 Msa1045960:CDS 40.0%
TCCAATCAATACCCAACTTC+TGG - chr7_2:6227767-6227786 None:intergenic 40.0%
!! GGTATTGATTGGAGCTATGT+TGG + chr7_2:6227774-6227793 Msa1045960:CDS 40.0%
!! TGTTGGTTCACAGCTTGAAT+TGG + chr7_2:6227791-6227810 Msa1045960:CDS 40.0%
GAAGGCAAAATCTCTTAAGC+TGG + chr7_2:6227869-6227888 Msa1045960:CDS 40.0%
CAAGTGAGGTGTGAACTTTA+TGG + chr7_2:6227896-6227915 Msa1045960:exon 40.0%
! GTCTTTTATTAACCCGTACG+CGG - chr7_2:6227949-6227968 None:intergenic 40.0%
AATAAAAGACAGCGGCTAAG+GGG + chr7_2:6227959-6227978 Msa1045960:three_prime_UTR 40.0%
TGCATGGTGCAATTATTGCA+GGG - chr7_2:6228126-6228145 None:intergenic 40.0%
TTGCATGGTGCAATTATTGC+AGG - chr7_2:6228127-6228146 None:intergenic 40.0%
GACTGTCCGATCTAAATCAA+TGG + chr7_2:6228158-6228177 Msa1045960:three_prime_UTR 40.0%
!! CCTCTGCCATTGATTTAGAT+CGG - chr7_2:6228167-6228186 None:intergenic 40.0%
GTGAACTTAGCTCAGTTGGT+TGG - chr7_2:6223051-6223070 None:intergenic 45.0%
TACAACTATCTCGTTCACGC+TGG - chr7_2:6223158-6223177 None:intergenic 45.0%
! AAAGAAGCGCGGTTTGTGTT+TGG - chr7_2:6223235-6223254 None:intergenic 45.0%
GAGATTCTGGTAAAGAAGCG+CGG - chr7_2:6223246-6223265 None:intergenic 45.0%
GATCTGGATCGAAGAGATTC+TGG - chr7_2:6223259-6223278 None:intergenic 45.0%
!! GAAGCTCGTTTTGATGGATC+TGG - chr7_2:6223275-6223294 None:intergenic 45.0%
TTTGTAGCTTACGGCGTAAG+TGG + chr7_2:6224214-6224233 Msa1045960:intron 45.0%
GGTGGTATTTGCCTTACAGT+CGG + chr7_2:6224498-6224517 Msa1045960:intron 45.0%
! TGCAGCTTTTGCCGAAATCA+TGG + chr7_2:6224589-6224608 Msa1045960:intron 45.0%
ACTTGAGGTTGGCAGAATCA+TGG - chr7_2:6224758-6224777 None:intergenic 45.0%
TGTGAGCATCTAATCCTGCA+AGG - chr7_2:6224859-6224878 None:intergenic 45.0%
GAAATGGAGTTCCTGCAAAG+AGG + chr7_2:6224887-6224906 Msa1045960:CDS 45.0%
CGGCAGAGATTATCATACCA+TGG - chr7_2:6224952-6224971 None:intergenic 45.0%
AGAGGAATCAGATCCGTAAC+GGG - chr7_2:6224976-6224995 None:intergenic 45.0%
ATCGCAATTCTCTGTGATCC+GGG - chr7_2:6225551-6225570 None:intergenic 45.0%
GATCAAACTGATGGAGGTGA+TGG + chr7_2:6225970-6225989 Msa1045960:CDS 45.0%
! CAACACTTGTGACTCTAGAG+AGG - chr7_2:6226727-6226746 None:intergenic 45.0%
TACCTTGCCACGTAGATCAA+GGG - chr7_2:6226819-6226838 None:intergenic 45.0%
TTACCTTGCCACGTAGATCA+AGG - chr7_2:6226820-6226839 None:intergenic 45.0%
!! AGAAATTTTCTGGCCCAAGG+TGG + chr7_2:6226981-6227000 Msa1045960:CDS 45.0%
!! GAAATTTTCTGGCCCAAGGT+GGG + chr7_2:6226982-6227001 Msa1045960:CDS 45.0%
TAACTAGAGCTTCCCACCTT+GGG - chr7_2:6226997-6227016 None:intergenic 45.0%
TTAACTAGAGCTTCCCACCT+TGG - chr7_2:6226998-6227017 None:intergenic 45.0%
AAAAAGGGGCCAAGAAGCAA+AGG + chr7_2:6227017-6227036 Msa1045960:CDS 45.0%
ATAGGCAGGATTCTTAACGC+TGG - chr7_2:6227059-6227078 None:intergenic 45.0%
! TATAAGGTGTCAGGATAGGC+AGG - chr7_2:6227073-6227092 None:intergenic 45.0%
! GGAGCAACATATAAGGTGTC+AGG - chr7_2:6227082-6227101 None:intergenic 45.0%
AATGTGATGGCTTACGGTGT+CGG - chr7_2:6227116-6227135 None:intergenic 45.0%
GTATCTGGGTCCTTAAAGTC+AGG + chr7_2:6227395-6227414 Msa1045960:intron 45.0%
CGATAAATGCTTGAAGGGCT+TGG - chr7_2:6227677-6227696 None:intergenic 45.0%
GGTTCACAGCTTGAATTGGA+AGG + chr7_2:6227795-6227814 Msa1045960:CDS 45.0%
GTAATGTATGATGCCGCGTA+CGG + chr7_2:6227933-6227952 Msa1045960:three_prime_UTR 45.0%
TAATGTATGATGCCGCGTAC+GGG + chr7_2:6227934-6227953 Msa1045960:three_prime_UTR 45.0%
CCGATCTAAATCAATGGCAG+AGG + chr7_2:6228164-6228183 Msa1045960:three_prime_UTR 45.0%
!!! TTAAATAATTGTTTTTTAAT+CGG - chr7_2:6227454-6227473 None:intergenic 5.0%
!! ATTAAAAAACAATTATTTAA+GGG + chr7_2:6227454-6227473 Msa1045960:intron 5.0%
CCTCGTGAACTTAGCTCAGT+TGG - chr7_2:6223055-6223074 None:intergenic 50.0%
CCAACTGAGCTAAGTTCACG+AGG + chr7_2:6223052-6223071 Msa1045960:five_prime_UTR 50.0%
TGGAGTTCCTGCAAAGAGGA+CGG + chr7_2:6224891-6224910 Msa1045960:CDS 50.0%
TGAAGAACCGTCCTCTTTGC+AGG - chr7_2:6224901-6224920 None:intergenic 50.0%
AGAAACAAGGGCAGAGTCCA+TGG + chr7_2:6224932-6224951 Msa1045960:CDS 50.0%
TAATCTCTGCCGACCCGTTA+CGG + chr7_2:6224960-6224979 Msa1045960:CDS 50.0%
!! GAATCAGATCCGTAACGGGT+CGG - chr7_2:6224972-6224991 None:intergenic 50.0%
GAGACATGTCTATGCCTCCA+CGG - chr7_2:6225408-6225427 None:intergenic 50.0%
GCGCCATAGCATAGAGAGTT+TGG - chr7_2:6225664-6225683 None:intergenic 50.0%
TGGCGCGATAGAGATGCTAT+TGG + chr7_2:6225678-6225697 Msa1045960:intron 50.0%
!! AGTATCTCCTAGGCTTGCTG+AGG + chr7_2:6226008-6226027 Msa1045960:CDS 50.0%
TCAGTATCCTCAGCAAGCCT+AGG - chr7_2:6226018-6226037 None:intergenic 50.0%
!! AGGCTTGCTGAGGATACTGA+AGG + chr7_2:6226018-6226037 Msa1045960:CDS 50.0%
TGATGCTTACTTGGACGGTC+TGG + chr7_2:6226682-6226701 Msa1045960:CDS 50.0%
CACTCGACTGACAAAGAACG+AGG - chr7_2:6226750-6226769 None:intergenic 50.0%
CTCGTTCTTTGTCAGTCGAG+TGG + chr7_2:6226748-6226767 Msa1045960:CDS 50.0%
ACGTAGATCAAGGGCTTCTG+GGG - chr7_2:6226810-6226829 None:intergenic 50.0%
CACGTAGATCAAGGGCTTCT+GGG - chr7_2:6226811-6226830 None:intergenic 50.0%
CAAGAAGCAAAGGCTCCTGT+GGG + chr7_2:6227027-6227046 Msa1045960:CDS 50.0%
ATGTGATGGCTTACGGTGTC+GGG - chr7_2:6227115-6227134 None:intergenic 50.0%
GTCTGGCATGGTAGATACCT+GGG - chr7_2:6227655-6227674 None:intergenic 50.0%
! AATGCTTGAAGGGCTTGGTC+TGG - chr7_2:6227672-6227691 None:intergenic 50.0%
TGAATCCAGGAGGCTGTCAA+AGG - chr7_2:6227841-6227860 None:intergenic 50.0%
CTTAAGCTGGTCAGCAAGTG+AGG + chr7_2:6227882-6227901 Msa1045960:CDS 50.0%
! CTGTTGGTTGGTGTCCTTGC+AGG + chr7_2:6224842-6224861 Msa1045960:intron 55.0%
TGCAGGGAACTTGTGCAAGC+AGG + chr7_2:6225868-6225887 Msa1045960:intron 55.0%
GCAGGGAACTTGTGCAAGCA+GGG + chr7_2:6225869-6225888 Msa1045960:intron 55.0%
CGAAGCGACACCAACACATG+AGG - chr7_2:6226442-6226461 None:intergenic 55.0%
TGCTTACTTGGACGGTCTGG+AGG + chr7_2:6226685-6226704 Msa1045960:CDS 55.0%
CCACGTAGATCAAGGGCTTC+TGG - chr7_2:6226812-6226831 None:intergenic 55.0%
CCAGAAGCCCTTGATCTACG+TGG + chr7_2:6226809-6226828 Msa1045960:CDS 55.0%
AGCCCTTGATCTACGTGGCA+AGG + chr7_2:6226814-6226833 Msa1045960:CDS 55.0%
!! CTGGTAAGCCAGTGCTGCTT+GGG - chr7_2:6226951-6226970 None:intergenic 55.0%
CCACAGGAGCCTTTGCTTCT+TGG - chr7_2:6227029-6227048 None:intergenic 55.0%
CCAAGAAGCAAAGGCTCCTG+TGG + chr7_2:6227026-6227045 Msa1045960:CDS 55.0%
! TAACGCTGGTTGAAGCCCAC+AGG - chr7_2:6227045-6227064 None:intergenic 55.0%
! ACGGTGTCGGGTCCAATAAG+AGG - chr7_2:6227103-6227122 None:intergenic 55.0%
GGTCTGGCATGGTAGATACC+TGG - chr7_2:6227656-6227675 None:intergenic 55.0%
! TTGAAGGGCTTGGTCTGGCA+TGG - chr7_2:6227667-6227686 None:intergenic 55.0%
GAAAGCCTTTGACAGCCTCC+TGG + chr7_2:6227833-6227852 Msa1045960:CDS 55.0%
TCTCCTGCAGTGAATCCAGG+AGG - chr7_2:6227851-6227870 None:intergenic 55.0%
CCTTCTCCTGCAGTGAATCC+AGG - chr7_2:6227854-6227873 None:intergenic 55.0%
CCTGGATTCACTGCAGGAGA+AGG + chr7_2:6227851-6227870 Msa1045960:CDS 55.0%
AGGCGTCACTAGCAACCCAG+CGG + chr7_2:6225014-6225033 Msa1045960:CDS 60.0%
GGGACACATGCAGCTGTAGC+TGG - chr7_2:6226108-6226127 None:intergenic 60.0%
!! TTGGACGGTCTGGAGGCATC+TGG + chr7_2:6226692-6226711 Msa1045960:CDS 60.0%
!! TGGACGGTCTGGAGGCATCT+GGG + chr7_2:6226693-6226712 Msa1045960:CDS 60.0%
AGCAGTAGCCCAAGCAGCAC+TGG + chr7_2:6226940-6226959 Msa1045960:CDS 60.0%
! GCTGGTAAGCCAGTGCTGCT+TGG - chr7_2:6226952-6226971 None:intergenic 60.0%
!! TCGATCACGGTGCTGTAGCC+AGG + chr7_2:6227694-6227713 Msa1045960:CDS 60.0%
CAGCCTCCTGGATTCACTGC+AGG + chr7_2:6227845-6227864 Msa1045960:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 6222916 6228300 6222916 ID=Msa1045960;Name=Msa1045960
chr7_2 mRNA 6222916 6228300 6222916 ID=Msa1045960-mRNA-1;Parent=Msa1045960;Name=Msa1045960-mRNA-1;_AED=0.03;_eAED=0.03;_QI=280|1|1|1|1|1|7|398|443
chr7_2 exon 6222916 6223386 6222916 ID=Msa1045960-mRNA-1:exon:1393;Parent=Msa1045960-mRNA-1
chr7_2 exon 6224864 6225035 6224864 ID=Msa1045960-mRNA-1:exon:1394;Parent=Msa1045960-mRNA-1
chr7_2 exon 6225286 6225335 6225286 ID=Msa1045960-mRNA-1:exon:1395;Parent=Msa1045960-mRNA-1
chr7_2 exon 6225873 6226173 6225873 ID=Msa1045960-mRNA-1:exon:1396;Parent=Msa1045960-mRNA-1
chr7_2 exon 6226647 6226835 6226647 ID=Msa1045960-mRNA-1:exon:1397;Parent=Msa1045960-mRNA-1
chr7_2 exon 6226938 6227120 6226938 ID=Msa1045960-mRNA-1:exon:1398;Parent=Msa1045960-mRNA-1
chr7_2 exon 6227657 6228300 6227657 ID=Msa1045960-mRNA-1:exon:1399;Parent=Msa1045960-mRNA-1
chr7_2 five_prime_UTR 6222916 6223195 6222916 ID=Msa1045960-mRNA-1:five_prime_utr;Parent=Msa1045960-mRNA-1
chr7_2 CDS 6223196 6223386 6223196 ID=Msa1045960-mRNA-1:cds;Parent=Msa1045960-mRNA-1
chr7_2 CDS 6224864 6225035 6224864 ID=Msa1045960-mRNA-1:cds;Parent=Msa1045960-mRNA-1
chr7_2 CDS 6225286 6225335 6225286 ID=Msa1045960-mRNA-1:cds;Parent=Msa1045960-mRNA-1
chr7_2 CDS 6225873 6226173 6225873 ID=Msa1045960-mRNA-1:cds;Parent=Msa1045960-mRNA-1
chr7_2 CDS 6226647 6226835 6226647 ID=Msa1045960-mRNA-1:cds;Parent=Msa1045960-mRNA-1
chr7_2 CDS 6226938 6227120 6226938 ID=Msa1045960-mRNA-1:cds;Parent=Msa1045960-mRNA-1
chr7_2 CDS 6227657 6227902 6227657 ID=Msa1045960-mRNA-1:cds;Parent=Msa1045960-mRNA-1
chr7_2 three_prime_UTR 6227903 6228300 6227903 ID=Msa1045960-mRNA-1:three_prime_utr;Parent=Msa1045960-mRNA-1
Gene Sequence

>Msa1045960

ATGGCTTCTTCACTTTCGGTTTCGAAGATCACAACACCAAACACAAACCGCGCTTCTTTACCAGAATCTCTTCGATCCAGATCCATCAAAACGAGCTTCTTAGCTTTCAACAATACAAATGATTTCAAAACTAACCTCTCTGCTTCTTCTTTAAGAACAACTCGTGAAAACCGTTTTGTAACTTCTTTGAGGATTAGATGCTCACAAACAGATGGAAATGGAGTTCCTGCAAAGAGGACGGTTCTTCATGATCTTTATGAGAAACAAGGGCAGAGTCCATGGTATGATAATCTCTGCCGACCCGTTACGGATCTGATTCCTCTTATTGAAAGTGGTGTTAGAGGCGTCACTAGCAACCCAGCGATCTTTCAGAAAGCTATTTCATCTTCAAGTGCTTACAATGATCAATTCAGGGAACTTGTGCAAGCAGGGAAAGACATTGACAGTGCATACTGGGAACTTGTAGTGAAGGACATTCAAGATGCTTGCAAACTATTTGAATCAATTTATGATCAAACTGATGGAGGTGATGGCTATGTTTCTGTTGAAGTATCTCCTAGGCTTGCTGAGGATACTGAAGGAACCATAGAAGCTGCAAAATGGCTTCATAAAGTGGTTTCTCGCCCCAATGTGTATATTAAGATTCCAGCTACAGCTGCATGTGTCCCTTCAATTAAGGAAGTTATCGCCAATGGAATAAGTGTGAACGTGACTCTGATATTCTCCCTTGAAAGATATGAAGCTGTAATTGATGCTTACTTGGACGGTCTGGAGGCATCTGGGTTAAATGACCTCTCTAGAGTCACAAGTGTTGCCTCGTTCTTTGTCAGTCGAGTGGACACTCTCATTGACAAGATGCTTGAGAAAATTGGCACCCCAGAAGCCCTTGATCTACGTGGCAAGGCAGCAGTAGCCCAAGCAGCACTGGCTTACCAGCTATACCAAAAGAAATTTTCTGGCCCAAGGTGGGAAGCTCTAGTTAAAAAAGGGGCCAAGAAGCAAAGGCTCCTGTGGGCTTCAACCAGCGTTAAGAATCCTGCCTATCCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACCGTATCTACCATGCCAGACCAAGCCCTTCAAGCATTTATCGATCACGGTGCTGTAGCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACAATGCTATCCAGAAGTTGGGTATTGATTGGAGCTATGTTGGTTCACAGCTTGAATTGGAAGGAGTTGATTCATTCAAGAAAGCCTTTGACAGCCTCCTGGATTCACTGCAGGAGAAGGCAAAATCTCTTAAGCTGGTCAGCAAGTGA

Protein sequence

>Msa1045960

MASSLSVSKITTPNTNRASLPESLRSRSIKTSFLAFNNTNDFKTNLSASSLRTTRENRFVTSLRIRCSQTDGNGVPAKRTVLHDLYEKQGQSPWYDNLCRPVTDLIPLIESGVRGVTSNPAIFQKAISSSSAYNDQFRELVQAGKDIDSAYWELVVKDIQDACKLFESIYDQTDGGDGYVSVEVSPRLAEDTEGTIEAAKWLHKVVSRPNVYIKIPATAACVPSIKEVIANGISVNVTLIFSLERYEAVIDAYLDGLEASGLNDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFIDHGAVARTIDSNASEAEGIYNAIQKLGIDWSYVGSQLELEGVDSFKKAFDSLLDSLQEKAKSLKLVSK*