AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0666380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0666380 MtrunA17_Chr4g0004811 95.890 146 5 1 1 145 1 146 2.81e-87 251
Msa0666380 MtrunA17_Chr8g0345861 42.276 123 68 2 25 144 46 168 2.00e-26 97.8
Msa0666380 MtrunA17_Chr7g0276381 44.000 100 56 0 45 144 78 177 1.29e-25 95.9
Msa0666380 MtrunA17_Chr5g0412411 44.000 75 42 0 71 145 110 184 1.18e-17 75.5
Msa0666380 MtrunA17_Chr7g0275281 31.783 129 72 1 32 144 31 159 5.21e-16 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0666380 AT1G52220.1 58.974 156 53 1 1 145 1 156 4.70e-56 172
Msa0666380 AT1G52220.2 58.333 156 53 2 1 145 1 155 1.22e-53 166
Msa0666380 AT1G52220.4 50.350 143 54 3 1 126 1 143 2.96e-36 122
Msa0666380 AT1G52220.3 44.231 156 47 2 1 145 1 127 1.94e-31 109
Msa0666380 AT2G46820.2 49.425 87 44 0 58 144 86 172 1.73e-27 100
Msa0666380 AT2G46820.1 49.425 87 44 0 58 144 86 172 1.73e-27 100
Msa0666380 AT4G01150.1 33.663 101 67 0 44 144 62 162 1.57e-16 72.4
Msa0666380 AT4G38100.1 37.143 70 42 1 75 144 122 189 5.30e-12 60.8
Msa0666380 AT4G38100.2 37.143 70 42 1 75 144 82 149 5.53e-12 60.1

Find 48 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATCAGTTCCAACGAAAT+TGG 0.145845 4_4:-6336398 None:intergenic
GAAGAGAAACAGAGAAATTT+TGG 0.146035 4_4:-6334685 None:intergenic
TCCAACGAAATTGGGATAAT+TGG 0.178168 4_4:-6336389 None:intergenic
GCTTATATCATTGACTTAAA+TGG 0.181879 4_4:+6334595 Msa0666380:exon
CCATTTGTTGTGAAGGCTTC+TGG 0.198643 4_4:+6335592 Msa0666380:CDS
AAGAGGTTATCTTACTATTA+AGG 0.256457 4_4:-6337867 None:intergenic
ATTTCGGCAGCACGTCTTAC+TGG 0.280857 4_4:-6337564 None:intergenic
TTCTCTGTTTCTCTTCTTCC+AGG 0.283501 4_4:+6334692 Msa0666380:CDS
CAAATCAACTTCAGATATCT+TGG 0.295889 4_4:+6337540 Msa0666380:CDS
GAGGACCGGTTGGGACTATT+TGG 0.314434 4_4:+6335791 Msa0666380:CDS
CACATTCTAGAGTCAAATTT+CGG 0.319163 4_4:-6337580 None:intergenic
TGCAGCTGTAGTAGCACTTT+GGG 0.320376 4_4:+6335823 Msa0666380:CDS
AAGTTGATTTGTTCAAGATT+TGG 0.346842 4_4:-6337528 None:intergenic
CGGTTGGGACTATTTGGTTT+GGG 0.351065 4_4:+6335797 Msa0666380:CDS
CCAATTTCGTTGGAACTGAT+TGG 0.352319 4_4:+6336398 Msa0666380:CDS
CCGGTTGGGACTATTTGGTT+TGG 0.371014 4_4:+6335796 Msa0666380:CDS
CAATCAGTTCCAACGAAATT+GGG 0.381358 4_4:-6336397 None:intergenic
TGGTGGCAAGCTTGCAATAA+TGG 0.403458 4_4:-6334621 None:intergenic
CCAGAAGCCTTCACAACAAA+TGG 0.404317 4_4:-6335592 None:intergenic
GCCAATTATCCCAATTTCGT+TGG 0.417854 4_4:+6336388 Msa0666380:CDS
TTGCAGCTGTAGTAGCACTT+TGG 0.420908 4_4:+6335822 Msa0666380:CDS
GATATAAATGCTTACCGGTC+AGG 0.421505 4_4:-6336792 None:intergenic
TTTGCATGAGGTCACATAAG+AGG 0.448497 4_4:-6337884 None:intergenic
GATAATTGGCAATTTGTCAA+TGG 0.472428 4_4:-6336375 None:intergenic
AATAGTCCCAACCGGTCCTC+AGG 0.474443 4_4:-6335788 None:intergenic
ATCTCTTATTCAAGCCTGAC+CGG 0.490702 4_4:+6336778 Msa0666380:CDS
AAATCAACTTCAGATATCTT+GGG 0.494856 4_4:+6337541 Msa0666380:CDS
TTTGCACTGTAATTTGACAT+AGG 0.495703 4_4:-6337640 None:intergenic
CCTTTGGGTTGCTCTACTGC+TGG 0.495973 4_4:-6334407 None:intergenic
TAACGTTCCATTTGTTGTGA+AGG 0.517813 4_4:+6335585 Msa0666380:CDS
CCACCACCATTGTTGCTCCA+TGG 0.542745 4_4:+6334638 Msa0666380:CDS
CCAAACCAAATAGTCCCAAC+CGG 0.548080 4_4:-6335796 None:intergenic
GATAAACCTGAGGACCGGTT+GGG 0.551960 4_4:+6335782 Msa0666380:CDS
AACTTAACTTCATTAAGCCA+AGG 0.561270 4_4:-6337828 None:intergenic
GGATAAACCTGAGGACCGGT+TGG 0.565385 4_4:+6335781 Msa0666380:CDS
TTCATTAAGCCAAGGTTCAG+TGG 0.573278 4_4:-6337820 None:intergenic
CCATGGAGCAACAATGGTGG+TGG 0.594826 4_4:-6334638 None:intergenic
GGCATCAACAAATTTGATAG+CGG 0.597711 4_4:+6335844 Msa0666380:CDS
CTTGAATAAGAGATAGCGAT+AGG 0.600486 4_4:-6336769 None:intergenic
TTTCCACCATGGAGCAACAA+TGG 0.607317 4_4:-6334644 None:intergenic
AGTGGGATAAACCTGAGGAC+CGG 0.644489 4_4:+6335777 Msa0666380:intron
CCACCATTGTTGCTCCATGG+TGG 0.645000 4_4:+6334641 Msa0666380:CDS
CCACCATGGAGCAACAATGG+TGG 0.655470 4_4:-6334641 None:intergenic
CTGAAAATAAGTTTCCACCA+TGG 0.658972 4_4:-6334655 None:intergenic
CCAGCAGTAGAGCAACCCAA+AGG 0.692124 4_4:+6334407 Msa0666380:five_prime_UTR
ACTGCTGGAAATGATGAGTG+AGG 0.708064 4_4:-6334392 None:intergenic
CAAACAGTGGGATAAACCTG+AGG 0.735011 4_4:+6335772 Msa0666380:intron
TGTACACAAAGTTAACACAG+TGG 0.735732 4_4:-6337688 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATTTATTTTATTTTTTG+TGG + chr4_4:6334328-6334347 Msa0666380:five_prime_UTR 10.0%
!!! AATTAAAGATTATTTTTTCA+TGG - chr4_4:6336301-6336320 None:intergenic 10.0%
!!! AAAGTATTAAAGAAAAAATA+CGG - chr4_4:6336487-6336506 None:intergenic 10.0%
!!! ATTATAATTTTTCTAGTTTT+TGG - chr4_4:6336607-6336626 None:intergenic 10.0%
!!! TTTCTTTTCTTTAATTATTA+TGG - chr4_4:6336943-6336962 None:intergenic 10.0%
!! AATTATGACATTGTTTAAAA+CGG + chr4_4:6334824-6334843 Msa0666380:intron 15.0%
!! ATACATAAAAGAAATTCAAA+TGG + chr4_4:6335358-6335377 Msa0666380:intron 15.0%
!!! GTTCAAAAATAAACATTTTA+TGG - chr4_4:6335492-6335511 None:intergenic 15.0%
!!! ACTAACAAATTTTTACATTA+GGG - chr4_4:6336135-6336154 None:intergenic 15.0%
!! AGAAATAAAACAATACCTTT+GGG - chr4_4:6334425-6334444 None:intergenic 20.0%
!! AAGAAATAAAACAATACCTT+TGG - chr4_4:6334426-6334445 None:intergenic 20.0%
!!! AGATTATTCCTTTTAATTCT+TGG + chr4_4:6334462-6334481 Msa0666380:intron 20.0%
!! AATCATTACCAAGAATTAAA+AGG - chr4_4:6334473-6334492 None:intergenic 20.0%
!!! ATTATGACATTGTTTAAAAC+GGG + chr4_4:6334825-6334844 Msa0666380:intron 20.0%
!!! TCACATGCAATATTTTTAAT+TGG - chr4_4:6335449-6335468 None:intergenic 20.0%
!! AAAAAATGAGATAAAGTGTA+AGG - chr4_4:6335990-6336009 None:intergenic 20.0%
!!! CACTAACAAATTTTTACATT+AGG - chr4_4:6336136-6336155 None:intergenic 20.0%
!!! TTTTTCATGGTACAAAAAAA+AGG - chr4_4:6336288-6336307 None:intergenic 20.0%
!! GAAAAAAATCAAAATCAGAA+TGG - chr4_4:6336335-6336354 None:intergenic 20.0%
!! GAAAAAGAAAATTAGTATCA+AGG + chr4_4:6336899-6336918 Msa0666380:intron 20.0%
!! TTCTTTAATTATTATGGCTA+TGG - chr4_4:6336937-6336956 None:intergenic 20.0%
!!! AATAAATAGTTTTTTGCCAA+GGG + chr4_4:6337097-6337116 Msa0666380:intron 20.0%
!!! TAATATTTTTCGTAAACACA+AGG - chr4_4:6337126-6337145 None:intergenic 20.0%
!! TAATCACTATTAACAACTTA+TGG - chr4_4:6337374-6337393 None:intergenic 20.0%
!!! GCTTATATCATTGACTTAAA+TGG + chr4_4:6334595-6334614 Msa0666380:exon 25.0%
!! TTATGACATTGTTTAAAACG+GGG + chr4_4:6334826-6334845 Msa0666380:intron 25.0%
!!! TGTAGGGCATATTTTTTTTT+TGG - chr4_4:6335083-6335102 None:intergenic 25.0%
! TTCTGTAAAAAAACATGGTA+AGG - chr4_4:6335244-6335263 None:intergenic 25.0%
!!! TGTTTATTTTTGAACTTCAG+TGG + chr4_4:6335497-6335516 Msa0666380:intron 25.0%
! CAAAAAACAAACAGAAACTT+AGG - chr4_4:6335740-6335759 None:intergenic 25.0%
!!! AGAATTTTAACCGAACTTTA+AGG + chr4_4:6335914-6335933 Msa0666380:intron 25.0%
! TTTGAACTGAGTATATTTCA+AGG + chr4_4:6336173-6336192 Msa0666380:intron 25.0%
!! TTCTGTGATATTTTGTGTAT+AGG + chr4_4:6336352-6336371 Msa0666380:intron 25.0%
! AAATAATGTGTAAACTCATG+AGG + chr4_4:6336451-6336470 Msa0666380:intron 25.0%
!!! TTTTTCTAGTTTTTGGAACA+GGG - chr4_4:6336600-6336619 None:intergenic 25.0%
!!! ATTTTTCTAGTTTTTGGAAC+AGG - chr4_4:6336601-6336620 None:intergenic 25.0%
!! AATTTCTTTTTCTGTTTCAG+TGG + chr4_4:6336742-6336761 Msa0666380:intron 25.0%
! AAAGTGATATAAATGCTTAC+CGG - chr4_4:6336800-6336819 None:intergenic 25.0%
!!! GAATAAATAGTTTTTTGCCA+AGG + chr4_4:6337096-6337115 Msa0666380:intron 25.0%
! AACTGAGAAGATAGAAATAA+GGG - chr4_4:6337205-6337224 None:intergenic 25.0%
!! TTTCACAACCAAACATTTTT+AGG + chr4_4:6337235-6337254 Msa0666380:intron 25.0%
!!! TTTATTTTATACAACATGCG+AGG - chr4_4:6337347-6337366 None:intergenic 25.0%
!! TTGAATATTTTCTTGATTGC+AGG + chr4_4:6337494-6337513 Msa0666380:intron 25.0%
!! TGAATATTTTCTTGATTGCA+GGG + chr4_4:6337495-6337514 Msa0666380:intron 25.0%
!!! AAGTTGATTTGTTCAAGATT+TGG - chr4_4:6337531-6337550 None:intergenic 25.0%
! AAATCAACTTCAGATATCTT+GGG + chr4_4:6337541-6337560 Msa0666380:CDS 25.0%
! AAGAGGTTATCTTACTATTA+AGG - chr4_4:6337870-6337889 None:intergenic 25.0%
! TTTTTGTGGTTCACATTCTT+TGG + chr4_4:6334342-6334361 Msa0666380:five_prime_UTR 30.0%
! TTTTGTGGTTCACATTCTTT+GGG + chr4_4:6334343-6334362 Msa0666380:five_prime_UTR 30.0%
TCAATGATATAAGCAGAATC+TGG - chr4_4:6334589-6334608 None:intergenic 30.0%
!! ATGGTGGAAACTTATTTTCA+GGG + chr4_4:6334657-6334676 Msa0666380:CDS 30.0%
! GAAGAGAAACAGAGAAATTT+TGG - chr4_4:6334688-6334707 None:intergenic 30.0%
AAAAGAACAAACCCAGTAAA+CGG - chr4_4:6334721-6334740 None:intergenic 30.0%
!!! CATCAGATTGAAAGTGTTTT+CGG + chr4_4:6334863-6334882 Msa0666380:intron 30.0%
TGCATGATATATGCAAGTTA+TGG + chr4_4:6335037-6335056 Msa0666380:intron 30.0%
GCATGATATATGCAAGTTAT+GGG + chr4_4:6335038-6335057 Msa0666380:intron 30.0%
CATGATATATGCAAGTTATG+GGG + chr4_4:6335039-6335058 Msa0666380:intron 30.0%
!!! ATTTTTTTTTTGGTGGTGTC+CGG - chr4_4:6335073-6335092 None:intergenic 30.0%
!!! AGGGCATATTTTTTTTTTGG+TGG - chr4_4:6335080-6335099 None:intergenic 30.0%
TGCTTGAACTAACTAAAAAG+TGG + chr4_4:6335121-6335140 Msa0666380:intron 30.0%
!!! ACCATGTTTTTTTACAGAAG+AGG + chr4_4:6335245-6335264 Msa0666380:intron 30.0%
ATAGTTAGTTCAAGCACTAA+GGG - chr4_4:6335340-6335359 None:intergenic 30.0%
TATAGTTAGTTCAAGCACTA+AGG - chr4_4:6335341-6335360 None:intergenic 30.0%
AAAAAAGAGACGAAAACGAT+GGG - chr4_4:6335697-6335716 None:intergenic 30.0%
TAAAAAAGAGACGAAAACGA+TGG - chr4_4:6335698-6335717 None:intergenic 30.0%
TTTGTTGATGTTCAAACAGT+GGG + chr4_4:6335760-6335779 Msa0666380:intron 30.0%
CCAAACAAAACCTTAAAGTT+CGG - chr4_4:6335927-6335946 None:intergenic 30.0%
!!! CGAACTTTAAGGTTTTGTTT+GGG + chr4_4:6335925-6335944 Msa0666380:intron 30.0%
ATAATGAATGTCACCAATGT+CGG - chr4_4:6336237-6336256 None:intergenic 30.0%
GATAATTGGCAATTTGTCAA+TGG - chr4_4:6336378-6336397 None:intergenic 30.0%
!!! TTTTCTAGTTTTTGGAACAG+GGG - chr4_4:6336599-6336618 None:intergenic 30.0%
CTTGCAAAAACAAAAACAGT+CGG - chr4_4:6336667-6336686 None:intergenic 30.0%
!!! ACTGTTTTTGTTTTTGCAAG+AGG + chr4_4:6336667-6336686 Msa0666380:intron 30.0%
!!! CTGTTTTTGTTTTTGCAAGA+GGG + chr4_4:6336668-6336687 Msa0666380:intron 30.0%
!! GATGAATTGATGGATTGATT+TGG + chr4_4:6336695-6336714 Msa0666380:intron 30.0%
TTGATTTCCTAATTGAAGTG+AGG + chr4_4:6336873-6336892 Msa0666380:intron 30.0%
TTTCTTTCCTCACTTCAATT+AGG - chr4_4:6336883-6336902 None:intergenic 30.0%
! TATCCTTTTAACCCTTTGAT+TGG + chr4_4:6336981-6337000 Msa0666380:intron 30.0%
AAACCAATCAAAGGGTTAAA+AGG - chr4_4:6336987-6337006 None:intergenic 30.0%
GAACTGAGAAGATAGAAATA+AGG - chr4_4:6337206-6337225 None:intergenic 30.0%
TTATGAGGCCTAAAAATGTT+TGG - chr4_4:6337246-6337265 None:intergenic 30.0%
CAAATCAACTTCAGATATCT+TGG + chr4_4:6337540-6337559 Msa0666380:CDS 30.0%
!! CACATTCTAGAGTCAAATTT+CGG - chr4_4:6337583-6337602 None:intergenic 30.0%
!! TTTTAAGTGCAGATTATCAG+TGG + chr4_4:6337604-6337623 Msa0666380:three_prime_UTR 30.0%
TTTGCACTGTAATTTGACAT+AGG - chr4_4:6337643-6337662 None:intergenic 30.0%
AACTTAACTTCATTAAGCCA+AGG - chr4_4:6337831-6337850 None:intergenic 30.0%
CTGAAAATAAGTTTCCACCA+TGG - chr4_4:6334658-6334677 None:intergenic 35.0%
!! CATGGTGGAAACTTATTTTC+AGG + chr4_4:6334656-6334675 Msa0666380:CDS 35.0%
TTAAATATAGCAGCATGCGT+AGG - chr4_4:6334898-6334917 None:intergenic 35.0%
!!! TTTTTTTTTTGGTGGTGTCC+GGG - chr4_4:6335072-6335091 None:intergenic 35.0%
GCCTCTTCTGTAAAAAAACA+TGG - chr4_4:6335249-6335268 None:intergenic 35.0%
TAGTTAGTTCAAGCACTAAG+GGG - chr4_4:6335339-6335358 None:intergenic 35.0%
ACCAACTGTACAAAACTTCA+GGG - chr4_4:6335405-6335424 None:intergenic 35.0%
TGTGATTGAAAATCAGGAAG+CGG - chr4_4:6335554-6335573 None:intergenic 35.0%
! CTTCCTGATTTTCAATCACA+GGG + chr4_4:6335554-6335573 Msa0666380:intron 35.0%
!! TAACGTTCCATTTGTTGTGA+AGG + chr4_4:6335585-6335604 Msa0666380:CDS 35.0%
! GTTTGTTGATGTTCAAACAG+TGG + chr4_4:6335759-6335778 Msa0666380:intron 35.0%
GGCATCAACAAATTTGATAG+CGG + chr4_4:6335844-6335863 Msa0666380:CDS 35.0%
! TCACCAATCTTGCACTATTT+TGG + chr4_4:6335873-6335892 Msa0666380:intron 35.0%
GTTCCAAAATAGTGCAAGAT+TGG - chr4_4:6335879-6335898 None:intergenic 35.0%
!!! CCGAACTTTAAGGTTTTGTT+TGG + chr4_4:6335924-6335943 Msa0666380:intron 35.0%
!!! TTTAAGGTTTTGTTTGGGAC+AGG + chr4_4:6335930-6335949 Msa0666380:intron 35.0%
!!! TTAAGGTTTTGTTTGGGACA+GGG + chr4_4:6335931-6335950 Msa0666380:intron 35.0%
!! TATTTTGCCTCCACTGATTA+AGG + chr4_4:6336048-6336067 Msa0666380:intron 35.0%
TATCCAGAATCCTTAATCAG+TGG - chr4_4:6336061-6336080 None:intergenic 35.0%
GAAACTAAAAGAGAAGGGTA+TGG - chr4_4:6336094-6336113 None:intergenic 35.0%
TTAGGGTTTCTTTGTGAGTT+GGG - chr4_4:6336118-6336137 None:intergenic 35.0%
ATTAGGGTTTCTTTGTGAGT+TGG - chr4_4:6336119-6336138 None:intergenic 35.0%
TTCCTTTGTCAATGCTATTC+AGG + chr4_4:6336257-6336276 Msa0666380:intron 35.0%
TCCAACGAAATTGGGATAAT+TGG - chr4_4:6336392-6336411 None:intergenic 35.0%
CAATCAGTTCCAACGAAATT+GGG - chr4_4:6336400-6336419 None:intergenic 35.0%
! GATTGGAATACTTTTCTCAG+TGG + chr4_4:6336415-6336434 Msa0666380:CDS 35.0%
CTTGAATAAGAGATAGCGAT+AGG - chr4_4:6336772-6336791 None:intergenic 35.0%
GGATAGATCAAGTGAACAAT+AGG - chr4_4:6336966-6336985 None:intergenic 35.0%
TCTCTCTCAAACCAATCAAA+GGG - chr4_4:6336995-6337014 None:intergenic 35.0%
ATCTCTCTCAAACCAATCAA+AGG - chr4_4:6336996-6337015 None:intergenic 35.0%
!! CTGGTTTGGAATCAATTATG+AGG - chr4_4:6337261-6337280 None:intergenic 35.0%
!!! GTGATTTTAAGTTCACTCAC+TGG + chr4_4:6337417-6337436 Msa0666380:intron 35.0%
TGTACACAAAGTTAACACAG+TGG - chr4_4:6337691-6337710 None:intergenic 35.0%
! AATTTTTCACCACTGAACCT+TGG + chr4_4:6337811-6337830 Msa0666380:three_prime_UTR 35.0%
! TTCTCTGTTTCTCTTCTTCC+AGG + chr4_4:6334692-6334711 Msa0666380:CDS 40.0%
TGTTATGTCCGTGTTTGTGT+TGG + chr4_4:6334946-6334965 Msa0666380:intron 40.0%
! ATGAAGCACCAACACAAACA+CGG - chr4_4:6334957-6334976 None:intergenic 40.0%
! TGTTTGTGTTGGTGCTTCAT+AGG + chr4_4:6334957-6334976 Msa0666380:intron 40.0%
!!! TTTTTTTTTGGTGGTGTCCG+GGG - chr4_4:6335071-6335090 None:intergenic 40.0%
TGTGCAATACACCAAATGCT+AGG - chr4_4:6335218-6335237 None:intergenic 40.0%
AAAAGTCACGAGTTCAAGTC+TGG - chr4_4:6335277-6335296 None:intergenic 40.0%
AGTTAGTTCAAGCACTAAGG+GGG - chr4_4:6335338-6335357 None:intergenic 40.0%
CAACTGTACAAAACTTCAGG+GGG - chr4_4:6335403-6335422 None:intergenic 40.0%
CCAACTGTACAAAACTTCAG+GGG - chr4_4:6335404-6335423 None:intergenic 40.0%
CACCAACTGTACAAAACTTC+AGG - chr4_4:6335406-6335425 None:intergenic 40.0%
TGGTGAGCAATGCATTAGTT+CGG + chr4_4:6335421-6335440 Msa0666380:intron 40.0%
! GCTTCCTGATTTTCAATCAC+AGG + chr4_4:6335553-6335572 Msa0666380:intron 40.0%
TCTCCCTGTGATTGAAAATC+AGG - chr4_4:6335560-6335579 None:intergenic 40.0%
! GATTTTCAATCACAGGGAGA+CGG + chr4_4:6335560-6335579 Msa0666380:intron 40.0%
!!! TAAGGTTTTGTTTGGGACAG+GGG + chr4_4:6335932-6335951 Msa0666380:intron 40.0%
! TTTGGGACAGGGGTTTATAA+GGG + chr4_4:6335942-6335961 Msa0666380:intron 40.0%
TGGGGGAAACTAAAAGAGAA+GGG - chr4_4:6336099-6336118 None:intergenic 40.0%
TTGGGGGAAACTAAAAGAGA+AGG - chr4_4:6336100-6336119 None:intergenic 40.0%
TAGGGTTTCTTTGTGAGTTG+GGG - chr4_4:6336117-6336136 None:intergenic 40.0%
ACTCAGTTCAAAGCTAGCAT+CGG - chr4_4:6336165-6336184 None:intergenic 40.0%
! TTCTCGAGAGTTTTCTTGGT+TGG - chr4_4:6336214-6336233 None:intergenic 40.0%
!! AGCCTGAATAGCATTGACAA+AGG - chr4_4:6336262-6336281 None:intergenic 40.0%
GCCAATTATCCCAATTTCGT+TGG + chr4_4:6336388-6336407 Msa0666380:CDS 40.0%
CCAATCAGTTCCAACGAAAT+TGG - chr4_4:6336401-6336420 None:intergenic 40.0%
CCAATTTCGTTGGAACTGAT+TGG + chr4_4:6336398-6336417 Msa0666380:CDS 40.0%
GCTCACAAGTGAGATTTCTT+TGG - chr4_4:6336556-6336575 None:intergenic 40.0%
AGAGGGACTTGATGAATTGA+TGG + chr4_4:6336685-6336704 Msa0666380:intron 40.0%
ATCTCTTATTCAAGCCTGAC+CGG + chr4_4:6336778-6336797 Msa0666380:CDS 40.0%
GATATAAATGCTTACCGGTC+AGG - chr4_4:6336795-6336814 None:intergenic 40.0%
GCAACTATTGAGAAGAAGTG+CGG - chr4_4:6337054-6337073 None:intergenic 40.0%
ACTGTTTCCAAACCAACCTA+GGG - chr4_4:6337291-6337310 None:intergenic 40.0%
AACTGTTTCCAAACCAACCT+AGG - chr4_4:6337292-6337311 None:intergenic 40.0%
! TGGTTTGGAAACAGTTGCAT+TGG + chr4_4:6337296-6337315 Msa0666380:intron 40.0%
TATACAACATGCGAGGCAAA+TGG - chr4_4:6337340-6337359 None:intergenic 40.0%
TCACTGTAAGTCTCATTCTG+AGG - chr4_4:6337401-6337420 None:intergenic 40.0%
TTCATTAAGCCAAGGTTCAG+TGG - chr4_4:6337823-6337842 None:intergenic 40.0%
ACTGCTGGAAATGATGAGTG+AGG - chr4_4:6334395-6334414 None:intergenic 45.0%
TGGTGGCAAGCTTGCAATAA+TGG - chr4_4:6334624-6334643 None:intergenic 45.0%
TTTCCACCATGGAGCAACAA+TGG - chr4_4:6334647-6334666 None:intergenic 45.0%
TCTTCCAGGTAACCGTTTAC+TGG + chr4_4:6334706-6334725 Msa0666380:intron 45.0%
CTTCCAGGTAACCGTTTACT+GGG + chr4_4:6334707-6334726 Msa0666380:intron 45.0%
AAACCCAGTAAACGGTTACC+TGG - chr4_4:6334713-6334732 None:intergenic 45.0%
! TATGTGGGAGCTTTGTGCAT+AGG - chr4_4:6335151-6335170 None:intergenic 45.0%
ACAAAGCTCCCACATATGCA+GGG + chr4_4:6335155-6335174 Msa0666380:intron 45.0%
TTACCAGACCCTGCATATGT+GGG - chr4_4:6335166-6335185 None:intergenic 45.0%
ACATATGCAGGGTCTGGTAA+GGG + chr4_4:6335166-6335185 Msa0666380:intron 45.0%
ACAACTTTACCACTGTGCCA+AGG + chr4_4:6335310-6335329 Msa0666380:intron 45.0%
! ACTTCAGGGGGCATATATCA+TGG - chr4_4:6335391-6335410 None:intergenic 45.0%
!! CCCCTGAAGTTTTGTACAGT+TGG + chr4_4:6335401-6335420 Msa0666380:intron 45.0%
CCAGAAGCCTTCACAACAAA+TGG - chr4_4:6335595-6335614 None:intergenic 45.0%
!! CCATTTGTTGTGAAGGCTTC+TGG + chr4_4:6335592-6335611 Msa0666380:CDS 45.0%
CAAACAGTGGGATAAACCTG+AGG + chr4_4:6335772-6335791 Msa0666380:intron 45.0%
CCAAACCAAATAGTCCCAAC+CGG - chr4_4:6335799-6335818 None:intergenic 45.0%
! CGGTTGGGACTATTTGGTTT+GGG + chr4_4:6335797-6335816 Msa0666380:CDS 45.0%
TTGCAGCTGTAGTAGCACTT+TGG + chr4_4:6335822-6335841 Msa0666380:CDS 45.0%
TGCAGCTGTAGTAGCACTTT+GGG + chr4_4:6335823-6335842 Msa0666380:CDS 45.0%
! GTTTGGGACAGGGGTTTATA+AGG + chr4_4:6335941-6335960 Msa0666380:intron 45.0%
TTGGGACAGGGGTTTATAAG+GGG + chr4_4:6335943-6335962 Msa0666380:intron 45.0%
ACAGGGGTTTATAAGGGGAA+GGG + chr4_4:6335948-6335967 Msa0666380:intron 45.0%
CCAGAATCCTTAATCAGTGG+AGG - chr4_4:6336058-6336077 None:intergenic 45.0%
! CCTCCACTGATTAAGGATTC+TGG + chr4_4:6336055-6336074 Msa0666380:intron 45.0%
! AAGAGAAGGGTATGGAGTAG+TGG - chr4_4:6336086-6336105 None:intergenic 45.0%
! AGGGTTTCTTTGTGAGTTGG+GGG - chr4_4:6336116-6336135 None:intergenic 45.0%
CTCAGTTCAAAGCTAGCATC+GGG - chr4_4:6336164-6336183 None:intergenic 45.0%
! TCGGTTCTCGAGAGTTTTCT+TGG - chr4_4:6336218-6336237 None:intergenic 45.0%
AAACTCTCGAGAACCGACAT+TGG + chr4_4:6336221-6336240 Msa0666380:intron 45.0%
CGTAAACACAAGGATACCCT+TGG - chr4_4:6337116-6337135 None:intergenic 45.0%
!! AAGATTCCCCTAGGTTGGTT+TGG + chr4_4:6337281-6337300 Msa0666380:intron 45.0%
CTGTTTCCAAACCAACCTAG+GGG - chr4_4:6337290-6337309 None:intergenic 45.0%
! CTGTAAGTCTCATTCTGAGG+TGG - chr4_4:6337398-6337417 None:intergenic 45.0%
!!! AATAATCTAAAATTAAATTA+AGG - chr4_4:6334450-6334469 None:intergenic 5.0%
! CGAGCTTAGCTCAGTTGGTA+GGG + chr4_4:6335010-6335029 Msa0666380:intron 50.0%
AAGTTATGGGGTTCGAACCC+CGG + chr4_4:6335051-6335070 Msa0666380:intron 50.0%
CACACGAGCTTGCATGTGTA+GGG - chr4_4:6335099-6335118 None:intergenic 50.0%
TCACACGAGCTTGCATGTGT+AGG - chr4_4:6335100-6335119 None:intergenic 50.0%
CACAAAGCTCCCACATATGC+AGG + chr4_4:6335154-6335173 Msa0666380:intron 50.0%
CTTACCAGACCCTGCATATG+TGG - chr4_4:6335167-6335186 None:intergenic 50.0%
CACATATGCAGGGTCTGGTA+AGG + chr4_4:6335165-6335184 Msa0666380:intron 50.0%
CATATGCAGGGTCTGGTAAG+GGG + chr4_4:6335167-6335186 Msa0666380:intron 50.0%
TCCTATGCAGGGTCTGGTAA+GGG + chr4_4:6335190-6335209 Msa0666380:intron 50.0%
TGGTAAGGGGTCCTAGCATT+TGG + chr4_4:6335204-6335223 Msa0666380:intron 50.0%
GAAAACGATGGGAGTGGTAG+GGG - chr4_4:6335686-6335705 None:intergenic 50.0%
CGAAAACGATGGGAGTGGTA+GGG - chr4_4:6335687-6335706 None:intergenic 50.0%
ACGAAAACGATGGGAGTGGT+AGG - chr4_4:6335688-6335707 None:intergenic 50.0%
AGAGACGAAAACGATGGGAG+TGG - chr4_4:6335692-6335711 None:intergenic 50.0%
AGTGGGATAAACCTGAGGAC+CGG + chr4_4:6335777-6335796 Msa0666380:intron 50.0%
GATAAACCTGAGGACCGGTT+GGG + chr4_4:6335782-6335801 Msa0666380:CDS 50.0%
CCGGTTGGGACTATTTGGTT+TGG + chr4_4:6335796-6335815 Msa0666380:CDS 50.0%
GACAGGGGTTTATAAGGGGA+AGG + chr4_4:6335947-6335966 Msa0666380:intron 50.0%
AAGGGGAAGGGAAGAGCTTA+TGG + chr4_4:6335960-6335979 Msa0666380:intron 50.0%
! CCTAGGGGAATCTTCTGGTT+TGG - chr4_4:6337275-6337294 None:intergenic 50.0%
CCAAACCAGAAGATTCCCCT+AGG + chr4_4:6337272-6337291 Msa0666380:intron 50.0%
ACCAGAAGATTCCCCTAGGT+TGG + chr4_4:6337276-6337295 Msa0666380:intron 50.0%
ACCAACCTAGGGGAATCTTC+TGG - chr4_4:6337280-6337299 None:intergenic 50.0%
ATTTCGGCAGCACGTCTTAC+TGG - chr4_4:6337567-6337586 None:intergenic 50.0%
!! CCTTTGGGTTGCTCTACTGC+TGG - chr4_4:6334410-6334429 None:intergenic 55.0%
CCAGCAGTAGAGCAACCCAA+AGG + chr4_4:6334407-6334426 Msa0666380:five_prime_UTR 55.0%
CCATGGAGCAACAATGGTGG+TGG - chr4_4:6334641-6334660 None:intergenic 55.0%
CCACCACCATTGTTGCTCCA+TGG + chr4_4:6334638-6334657 Msa0666380:CDS 55.0%
CCACCATGGAGCAACAATGG+TGG - chr4_4:6334644-6334663 None:intergenic 55.0%
CCACCATTGTTGCTCCATGG+TGG + chr4_4:6334641-6334660 Msa0666380:CDS 55.0%
GCGAGCTTAGCTCAGTTGGT+AGG + chr4_4:6335009-6335028 Msa0666380:intron 55.0%
TCTGGTAAGGGGTCCTATGC+AGG + chr4_4:6335178-6335197 Msa0666380:intron 55.0%
CTGGTAAGGGGTCCTATGCA+GGG + chr4_4:6335179-6335198 Msa0666380:intron 55.0%
GTCCTATGCAGGGTCTGGTA+AGG + chr4_4:6335189-6335208 Msa0666380:intron 55.0%
CCTATGCAGGGTCTGGTAAG+GGG + chr4_4:6335191-6335210 Msa0666380:intron 55.0%
GGATAAACCTGAGGACCGGT+TGG + chr4_4:6335781-6335800 Msa0666380:CDS 55.0%
AATAGTCCCAACCGGTCCTC+AGG - chr4_4:6335791-6335810 None:intergenic 55.0%
GAGGACCGGTTGGGACTATT+TGG + chr4_4:6335791-6335810 Msa0666380:CDS 55.0%
CCAACTGAGCTAAGCTCGCG+AGG - chr4_4:6335008-6335027 None:intergenic 60.0%
CCTCGCGAGCTTAGCTCAGT+TGG + chr4_4:6335005-6335024 Msa0666380:intron 60.0%
GCTCCCACATATGCAGGGTC+TGG + chr4_4:6335160-6335179 Msa0666380:intron 60.0%
AAGGGGTCCTATGCAGGGTC+TGG + chr4_4:6335184-6335203 Msa0666380:intron 60.0%
CCCCTTACCAGACCCTGCAT+AGG - chr4_4:6335170-6335189 None:intergenic 60.0%
!! CAAGCACTAAGGGGGTGCCT+TGG - chr4_4:6335330-6335349 None:intergenic 60.0%
!! AAGGGGGTGCCTTGGCACAG+TGG - chr4_4:6335322-6335341 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 6334247 6337895 6334247 ID=Msa0666380;Name=Msa0666380
chr4_4 mRNA 6334247 6337895 6334247 ID=Msa0666380-mRNA-1;Parent=Msa0666380;Name=Msa0666380-mRNA-1;_AED=0.01;_eAED=0.01;_QI=206|1|1|1|0.83|0.71|7|325|145
chr4_4 exon 6334247 6334428 6334247 ID=Msa0666380-mRNA-1:exon:2048;Parent=Msa0666380-mRNA-1
chr4_4 exon 6334590 6334713 6334590 ID=Msa0666380-mRNA-1:exon:2049;Parent=Msa0666380-mRNA-1
chr4_4 exon 6335575 6335669 6335575 ID=Msa0666380-mRNA-1:exon:2050;Parent=Msa0666380-mRNA-1
chr4_4 exon 6335779 6335865 6335779 ID=Msa0666380-mRNA-1:exon:2051;Parent=Msa0666380-mRNA-1
chr4_4 exon 6336374 6336436 6336374 ID=Msa0666380-mRNA-1:exon:2052;Parent=Msa0666380-mRNA-1
chr4_4 exon 6336762 6336799 6336762 ID=Msa0666380-mRNA-1:exon:2053;Parent=Msa0666380-mRNA-1
chr4_4 exon 6337516 6337895 6337516 ID=Msa0666380-mRNA-1:exon:2054;Parent=Msa0666380-mRNA-1
chr4_4 five_prime_UTR 6334247 6334428 6334247 ID=Msa0666380-mRNA-1:five_prime_utr;Parent=Msa0666380-mRNA-1
chr4_4 five_prime_UTR 6334590 6334613 6334590 ID=Msa0666380-mRNA-1:five_prime_utr;Parent=Msa0666380-mRNA-1
chr4_4 CDS 6334614 6334713 6334614 ID=Msa0666380-mRNA-1:cds;Parent=Msa0666380-mRNA-1
chr4_4 CDS 6335575 6335669 6335575 ID=Msa0666380-mRNA-1:cds;Parent=Msa0666380-mRNA-1
chr4_4 CDS 6335779 6335865 6335779 ID=Msa0666380-mRNA-1:cds;Parent=Msa0666380-mRNA-1
chr4_4 CDS 6336374 6336436 6336374 ID=Msa0666380-mRNA-1:cds;Parent=Msa0666380-mRNA-1
chr4_4 CDS 6336762 6336799 6336762 ID=Msa0666380-mRNA-1:cds;Parent=Msa0666380-mRNA-1
chr4_4 CDS 6337516 6337570 6337516 ID=Msa0666380-mRNA-1:cds;Parent=Msa0666380-mRNA-1
chr4_4 three_prime_UTR 6337571 6337895 6337571 ID=Msa0666380-mRNA-1:three_prime_utr;Parent=Msa0666380-mRNA-1
Gene Sequence

>Msa0666380

ATGGCTTCCATTATTGCAAGCTTGCCACCACCATTGTTGCTCCATGGTGGAAACTTATTTTCAGGGAACTTCCAAAATTTCTCTGTTTCTCTTCTTCCAGGGAGACGGAGTAACGTTCCATTTGTTGTGAAGGCTTCTGGAGAAAGTTCTGAATCTTCAACTTCGCTTACTGTTTTCAAGTCTGTTCAGAATGTTTGGGATAAACCTGAGGACCGGTTGGGACTATTTGGTTTGGGCTTTGCAGCTGTAGTAGCACTTTGGGCATCAACAAATTTGATAGCGGCCATTGACAAATTGCCAATTATCCCAATTTCGTTGGAACTGATTGGAATACTTTTCTCAGTGTGGTTCACCTATCGCTATCTCTTATTCAAGCCTGACCGGGAAGAACTTTTCCAAATCTTGAACAAATCAACTTCAGATATCTTGGGCCAGTAA

Protein sequence

>Msa0666380

MASIIASLPPPLLLHGGNLFSGNFQNFSVSLLPGRRSNVPFVVKASGESSESSTSLTVFKSVQNVWDKPEDRLGLFGLGFAAVVALWASTNLIAAIDKLPIIPISLELIGILFSVWFTYRYLLFKPDREELFQILNKSTSDILGQ*