AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1045870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045870 MtrunA17_Chr7g0214741 98.646 443 6 0 1 443 1 443 0.0 892
Msa1045870 MtrunA17_Chr8g0385641 69.149 376 115 1 62 436 34 409 0.0 546
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045870 AT5G13420.1 79.657 408 83 0 35 442 30 437 0.0 658

Find 136 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACAGGAGCCTTTGCTTCT+TGG 0.121680 7_2:-6120007 None:intergenic
TTATATGTTGCTCCTCTTAT+TGG 0.160550 7_2:+6120069 Msa1045870:CDS
CCACGTAGATCAAGGGCTTC+TGG 0.196646 7_2:-6119790 None:intergenic
CATTGTTAGTCTGAAATTCT+TGG 0.237216 7_2:+6121014 Msa1045870:three_prime_UTR
GACAAGATGCTTGAGAAAAT+TGG 0.255255 7_2:+6119763 Msa1045870:CDS
AACAATGGCTTCTTCACTTT+CGG 0.265437 7_2:+6116177 Msa1045870:exon
CACAGATGATTTATCATTCT+AGG 0.278158 7_2:-6120982 None:intergenic
TTGGACGGTCTGGAGGCATC+TGG 0.296116 7_2:+6119673 Msa1045870:CDS
AGCAGTAGCCCAAGCAGCAC+TGG 0.319222 7_2:+6119921 Msa1045870:CDS
ACATAAAATGACATCAGATT+TGG 0.322012 7_2:-6121236 None:intergenic
TGCATGTGTCCCTTCAATTA+AGG 0.343064 7_2:+6119097 Msa1045870:CDS
CTTATTGAAAGTGGTGTTAG+AGG 0.347970 7_2:+6117976 Msa1045870:CDS
GATCTGGATCGAAGAGATTC+TGG 0.349569 7_2:-6116241 None:intergenic
TCCAATCAATACCCAACTTC+TGG 0.350106 7_2:-6120744 None:intergenic
TGAAGAACCGTCCTCTTTGC+AGG 0.353042 7_2:-6117880 None:intergenic
CACGTAGATCAAGGGCTTCT+GGG 0.353425 7_2:-6119789 None:intergenic
CAAGTGAGGTGTGAACTTTA+TGG 0.357425 7_2:+6120876 Msa1045870:exon
TTGGGCCAGAAAATTTCTTT+TGG 0.367465 7_2:-6119957 None:intergenic
GTGCTTACAATGATCAATTC+AGG 0.381631 7_2:+6118296 Msa1045870:CDS
TTGCATGGTGCAATTATTGC+AGG 0.385691 7_2:-6121104 None:intergenic
TTACAGCTTCATATCTTTCA+AGG 0.387825 7_2:-6119639 None:intergenic
CCTTCTCCTGCAGTGAATCC+AGG 0.391080 7_2:-6120831 None:intergenic
CGATAAATGCTTGAAGGGCT+TGG 0.394216 7_2:-6120654 None:intergenic
AACACCTTACTTATTTACTT+TGG 0.395720 7_2:+6115929 Msa1045870:five_prime_UTR
TTTCCATGTACTTTGTATGC+TGG 0.396835 7_2:+6121062 Msa1045870:three_prime_UTR
TCCAGAAGTTGGGTATTGAT+TGG 0.397913 7_2:+6120743 Msa1045870:CDS
AAGACATTGACAGTGCATAC+TGG 0.398567 7_2:+6118874 Msa1045870:CDS
TGTTGGTTCACAGCTTGAAT+TGG 0.398912 7_2:+6120771 Msa1045870:CDS
CTGGTAAGCCAGTGCTGCTT+GGG 0.405777 7_2:-6119929 None:intergenic
GGAATCTTAATATACACATT+GGG 0.407298 7_2:-6119065 None:intergenic
GAACCATAGAAGCTGCAAAA+TGG 0.407939 7_2:+6119021 Msa1045870:CDS
TAATCTCTGCCGACCCGTTA+CGG 0.408310 7_2:+6117942 Msa1045870:CDS
TGATGCTTACTTGGACGGTC+TGG 0.408914 7_2:+6119663 Msa1045870:CDS
GCTGGTAAGCCAGTGCTGCT+TGG 0.416878 7_2:-6119930 None:intergenic
CTAACACCACTTTCAATAAG+AGG 0.417790 7_2:-6117973 None:intergenic
AGCTGTAATTGATGCTTACT+TGG 0.425218 7_2:+6119654 Msa1045870:CDS
GCGATAACTTCCTTAATTGA+AGG 0.430140 7_2:-6119107 None:intergenic
TAACTAGAGCTTCCCACCTT+GGG 0.431657 7_2:-6119975 None:intergenic
TGCAAAATGGCTTCATAAAG+TGG 0.434093 7_2:+6119034 Msa1045870:CDS
AATAAGAGGAGCAACATATA+AGG 0.440098 7_2:-6120067 None:intergenic
GAAAGCCTTTGACAGCCTCC+TGG 0.444184 7_2:+6120813 Msa1045870:CDS
AAAGAAGCGCGGTTTGTGTT+TGG 0.445528 7_2:-6116217 None:intergenic
CGTGATCGATAAATGCTTGA+AGG 0.447597 7_2:-6120660 None:intergenic
TGCTCACAAACAGATGGAAA+TGG 0.453362 7_2:+6117853 Msa1045870:CDS
ATGTGATGGCTTACGGTGTC+GGG 0.454815 7_2:-6120093 None:intergenic
GGGACACATGCAGCTGTAGC+TGG 0.457283 7_2:-6119086 None:intergenic
CACGTTCACACTTATTCCAT+TGG 0.457925 7_2:-6119129 None:intergenic
TGCAGGGAACTTGTGCAAGC+AGG 0.463242 7_2:+6118849 Msa1045870:intron
AATAAAATATGTAAGGTTTG+AGG 0.465057 7_2:-6115998 None:intergenic
TTAATAAAAGACAGCGGCTA+AGG 0.467268 7_2:+6120937 Msa1045870:three_prime_UTR
TACAATGCTATCCAGAAGTT+GGG 0.474420 7_2:+6120733 Msa1045870:CDS
GTAATGTATGATGCCGCGTA+CGG 0.474741 7_2:+6120913 Msa1045870:three_prime_UTR
ATACAATGCTATCCAGAAGT+TGG 0.476685 7_2:+6120732 Msa1045870:CDS
AATGCTTGAAGGGCTTGGTC+TGG 0.476962 7_2:-6120649 None:intergenic
AGAGGAATCAGATCCGTAAC+GGG 0.477720 7_2:-6117955 None:intergenic
TTAACTAGAGCTTCCCACCT+TGG 0.478200 7_2:-6119976 None:intergenic
TCGATCACGGTGCTGTAGCC+AGG 0.478289 7_2:+6120674 Msa1045870:CDS
GTAAATAAGTAAGGTGTTCG+AGG 0.483157 7_2:-6115924 None:intergenic
GGAGCAACATATAAGGTGTC+AGG 0.483934 7_2:-6120060 None:intergenic
CCAAGAAGCAAAGGCTCCTG+TGG 0.487273 7_2:+6120007 Msa1045870:CDS
AACTCCAAAGTAAATAAGTA+AGG 0.490041 7_2:-6115933 None:intergenic
CTGATTCCTCTTATTGAAAG+TGG 0.490876 7_2:+6117967 Msa1045870:CDS
TGCATTTGAGTCTATTGTCC+TGG 0.491718 7_2:-6120692 None:intergenic
TTACCTTGCCACGTAGATCA+AGG 0.493289 7_2:-6119798 None:intergenic
GGTATTGATTGGAGCTATGT+TGG 0.495472 7_2:+6120754 Msa1045870:CDS
TCAATTTATGATCAAACTGA+TGG 0.501880 7_2:+6118942 Msa1045870:CDS
CCTCGTGAACTTAGCTCAGT+TGG 0.505210 7_2:-6116037 None:intergenic
CGATAACTTCCTTAATTGAA+GGG 0.507817 7_2:-6119106 None:intergenic
ATTAAGGAAGTTATCGCCAA+TGG 0.509849 7_2:+6119113 Msa1045870:CDS
TAATGTATGATGCCGCGTAC+GGG 0.510892 7_2:+6120914 Msa1045870:three_prime_UTR
CAGCCTCCTGGATTCACTGC+AGG 0.514881 7_2:+6120825 Msa1045870:CDS
TGGAATCTTAATATACACAT+TGG 0.517086 7_2:-6119066 None:intergenic
TTTCTGTTGAAGTATCTCCT+AGG 0.521652 7_2:+6118979 Msa1045870:CDS
AGAAACAAGGGCAGAGTCCA+TGG 0.521731 7_2:+6117914 Msa1045870:CDS
TATAAGGTGTCAGGATAGGC+AGG 0.522356 7_2:-6120051 None:intergenic
CATGATCTTTATGAGAAACA+AGG 0.525914 7_2:+6117901 Msa1045870:CDS
CCTGGATTCACTGCAGGAGA+AGG 0.526429 7_2:+6120831 Msa1045870:CDS
TAATAAAAGACAGCGGCTAA+GGG 0.533896 7_2:+6120938 Msa1045870:three_prime_UTR
GACTGTCCGATCTAAATCAA+TGG 0.535269 7_2:+6121138 Msa1045870:three_prime_UTR
AGACATTGACAGTGCATACT+GGG 0.538449 7_2:+6118875 Msa1045870:CDS
CTCGTTCTTTGTCAGTCGAG+TGG 0.539822 7_2:+6119729 Msa1045870:CDS
TAACGCTGGTTGAAGCCCAC+AGG 0.542262 7_2:-6120023 None:intergenic
GAAGGCAAAATCTCTTAAGC+TGG 0.547270 7_2:+6120849 Msa1045870:CDS
TACAGCTTCATATCTTTCAA+GGG 0.547625 7_2:-6119638 None:intergenic
GCAGGGAACTTGTGCAAGCA+GGG 0.547808 7_2:+6118850 Msa1045870:intron
ACCTCAAAGAAGTTACAAAA+CGG 0.548564 7_2:-6116351 None:intergenic
AATGTGATGGCTTACGGTGT+CGG 0.552602 7_2:-6120094 None:intergenic
GTAATTGATGCTTACTTGGA+CGG 0.553368 7_2:+6119658 Msa1045870:CDS
TGGACGGTCTGGAGGCATCT+GGG 0.554082 7_2:+6119674 Msa1045870:CDS
GGTTCACAGCTTGAATTGGA+AGG 0.554895 7_2:+6120775 Msa1045870:CDS
CTTAAGCTGGTCAGCAAGTG+AGG 0.557674 7_2:+6120862 Msa1045870:CDS
AAACCAGCATACAAAGTACA+TGG 0.559423 7_2:-6121065 None:intergenic
TACCTTGCCACGTAGATCAA+GGG 0.561590 7_2:-6119797 None:intergenic
TCAGTATCCTCAGCAAGCCT+AGG 0.564022 7_2:-6118996 None:intergenic
CCTCTGCCATTGATTTAGAT+CGG 0.567391 7_2:-6121144 None:intergenic
TGCTTACTTGGACGGTCTGG+AGG 0.568623 7_2:+6119666 Msa1045870:CDS
TGAATCCAGGAGGCTGTCAA+AGG 0.570972 7_2:-6120818 None:intergenic
AGTCGAGATTTAAAATTGCA+TGG 0.571287 7_2:-6121119 None:intergenic
CTTCAAGCATTTATCGATCA+CGG 0.571494 7_2:+6120661 Msa1045870:CDS
TCAAATGCATCTGAAGCTGA+AGG 0.573568 7_2:+6120706 Msa1045870:CDS
TTGAAGGGCTTGGTCTGGCA+TGG 0.574976 7_2:-6120644 None:intergenic
AACATATAAGGTGTCAGGAT+AGG 0.576598 7_2:-6120055 None:intergenic
ACGGTGTCGGGTCCAATAAG+AGG 0.578637 7_2:-6120081 None:intergenic
GTGAACTTAGCTCAGTTGGT+TGG 0.579536 7_2:-6116033 None:intergenic
ATTAGATGCTCACAAACAGA+TGG 0.579685 7_2:+6117847 Msa1045870:CDS
GATCAAACTGATGGAGGTGA+TGG 0.584623 7_2:+6118951 Msa1045870:CDS
CCGATCTAAATCAATGGCAG+AGG 0.586545 7_2:+6121144 Msa1045870:three_prime_UTR
ACGTAGATCAAGGGCTTCTG+GGG 0.588870 7_2:-6119788 None:intergenic
GTGATCGATAAATGCTTGAA+GGG 0.588921 7_2:-6120659 None:intergenic
AGCCCTTGATCTACGTGGCA+AGG 0.589288 7_2:+6119795 Msa1045870:CDS
AAGAGGAATCAGATCCGTAA+CGG 0.596662 7_2:-6117956 None:intergenic
CAAGAAGCAAAGGCTCCTGT+GGG 0.597921 7_2:+6120008 Msa1045870:CDS
TGCATGGTGCAATTATTGCA+GGG 0.598726 7_2:-6121103 None:intergenic
ATGATCTTTATGAGAAACAA+GGG 0.602950 7_2:+6117902 Msa1045870:CDS
ATTTATGATCAAACTGATGG+AGG 0.617182 7_2:+6118945 Msa1045870:CDS
TGGAGTTCCTGCAAAGAGGA+CGG 0.623273 7_2:+6117873 Msa1045870:CDS
ATACTGGGAACTTGTAGTGA+AGG 0.629191 7_2:+6118890 Msa1045870:CDS
TACAACTATCTCGTTCACGC+TGG 0.630000 7_2:-6116140 None:intergenic
AGGCTTGCTGAGGATACTGA+AGG 0.632568 7_2:+6118999 Msa1045870:CDS
CGGCAGAGATTATCATACCA+TGG 0.638956 7_2:-6117931 None:intergenic
GAATCTTAATATACACATTG+GGG 0.640842 7_2:-6119064 None:intergenic
AGAAACAATGCTTATACACA+TGG 0.643168 7_2:+6115889 None:intergenic
GAAATGGAGTTCCTGCAAAG+AGG 0.646124 7_2:+6117869 Msa1045870:CDS
AATAAAAGACAGCGGCTAAG+GGG 0.653569 7_2:+6120939 Msa1045870:three_prime_UTR
GAATCAGATCCGTAACGGGT+CGG 0.659162 7_2:-6117951 None:intergenic
CAACACTTGTGACTCTAGAG+AGG 0.660116 7_2:-6119705 None:intergenic
ATAGGCAGGATTCTTAACGC+TGG 0.660124 7_2:-6120037 None:intergenic
AGTATCTCCTAGGCTTGCTG+AGG 0.671909 7_2:+6118989 Msa1045870:CDS
GAGATTCTGGTAAAGAAGCG+CGG 0.678266 7_2:-6116228 None:intergenic
CCAACTGAGCTAAGTTCACG+AGG 0.681889 7_2:+6116037 Msa1045870:five_prime_UTR
CACTCGACTGACAAAGAACG+AGG 0.684880 7_2:-6119728 None:intergenic
TCTCCTGCAGTGAATCCAGG+AGG 0.685827 7_2:-6120828 None:intergenic
TTCTTAAAGAAGAAGCAGAG+AGG 0.689999 7_2:-6116315 None:intergenic
CCAGAAGCCCTTGATCTACG+TGG 0.710968 7_2:+6119790 Msa1045870:CDS
TACGGGTTAATAAAAGACAG+CGG 0.756696 7_2:+6120931 Msa1045870:three_prime_UTR
AGGCGTCACTAGCAACCCAG+CGG 0.791833 7_2:+6117996 Msa1045870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTATTAAAATTTT+TGG + chr7_2:6117089-6117108 Msa1045870:intron 0.0%
!!! ATTAAATACTTTTAATTTTC+AGG + chr7_2:6117042-6117061 Msa1045870:intron 10.0%
!! ACAAATTATTTAAAAATTCA+GGG - chr7_2:6120357-6120376 None:intergenic 10.0%
!! TACAAATTATTTAAAAATTC+AGG - chr7_2:6120358-6120377 None:intergenic 10.0%
!!! ATTTTTAAATAATTTGTATC+TGG + chr7_2:6120360-6120379 Msa1045870:intron 10.0%
!!! TTTTTAAATAATTTGTATCT+GGG + chr7_2:6120361-6120380 Msa1045870:intron 10.0%
!! GATTAAAAAACAATTATTTA+AGG + chr7_2:6120433-6120452 Msa1045870:intron 10.0%
!!! ATGTTTTAGTTTTAATATTA+TGG + chr7_2:6121255-6121274 Msa1045870:three_prime_UTR 10.0%
!! GCATAAAAATAAAATATGTA+AGG - chr7_2:6116008-6116027 None:intergenic 15.0%
!! TCTATATGACATTATTTAAT+TGG - chr7_2:6116661-6116680 None:intergenic 15.0%
!! ATATATATATAGTTGCATTA+TGG + chr7_2:6116965-6116984 Msa1045870:intron 15.0%
!! GTAAAAAAAAATTACACTAT+CGG + chr7_2:6117010-6117029 Msa1045870:intron 15.0%
!!! AAATTTGAAAGAAAAACTTT+TGG - chr7_2:6118344-6118363 None:intergenic 15.0%
!! TATAAAAAAAATAGAAATCG+AGG - chr7_2:6118709-6118728 None:intergenic 15.0%
!!! TCGATTTCTATTTTTTTTAT+AGG + chr7_2:6118708-6118727 Msa1045870:intron 15.0%
!!! ATTTCTATTTTTTTTATAGG+AGG + chr7_2:6118711-6118730 Msa1045870:intron 15.0%
!!! TTTCTATTTTTTTTATAGGA+GGG + chr7_2:6118712-6118731 Msa1045870:intron 15.0%
!!! TTATTATGTTGATTATATCA+AGG - chr7_2:6119270-6119289 None:intergenic 15.0%
!! TGATATAATCAACATAATAA+TGG + chr7_2:6119270-6119289 Msa1045870:intron 15.0%
!! GATATAATCAACATAATAAT+GGG + chr7_2:6119271-6119290 Msa1045870:intron 15.0%
!!! GACAATTTTTTCAAAATTTA+CGG + chr7_2:6120406-6120425 Msa1045870:intron 15.0%
!! AAAATGTTTAATTAATCTGA+AGG - chr7_2:6120518-6120537 None:intergenic 15.0%
!!! AGTAGTATACTCATTTTTTT+TGG + chr7_2:6115958-6115977 Msa1045870:five_prime_UTR 20.0%
!! AATAAAATATGTAAGGTTTG+AGG - chr7_2:6116001-6116020 None:intergenic 20.0%
!!! ACAATTTTCATTTTCAACAA+TGG + chr7_2:6116162-6116181 Msa1045870:exon 20.0%
!!! TTTTGATTTTTATACACTGA+CGG + chr7_2:6116543-6116562 Msa1045870:intron 20.0%
!! TAATGTCATATAGATATTTG+TGG + chr7_2:6116667-6116686 Msa1045870:intron 20.0%
!! AGAGATTAATCTCTAAATAA+TGG + chr7_2:6116782-6116801 Msa1045870:intron 20.0%
!!! CATGAAATTTGTTTTTTCAT+TGG + chr7_2:6117150-6117169 Msa1045870:intron 20.0%
!! AGCTTAACATTAAAGTTAAA+GGG - chr7_2:6117440-6117459 None:intergenic 20.0%
!! AAGCTTAACATTAAAGTTAA+AGG - chr7_2:6117441-6117460 None:intergenic 20.0%
!! TCATATTCATTATAAACTTG+AGG - chr7_2:6117755-6117774 None:intergenic 20.0%
!!! ATTTTTGAAACATTATTCCT+AGG - chr7_2:6118129-6118148 None:intergenic 20.0%
!! AATGTTTCAAAAATCAATAC+TGG + chr7_2:6118135-6118154 Msa1045870:intron 20.0%
!! AAACTAAATATACTTTGTGA+AGG - chr7_2:6118474-6118493 None:intergenic 20.0%
!!! AAAGTATATTTAGTTTAGCT+TGG + chr7_2:6118478-6118497 Msa1045870:intron 20.0%
!!! TTCTATTTTTTTTATAGGAG+GGG + chr7_2:6118713-6118732 Msa1045870:intron 20.0%
!! GAAGATCTAAATTATACTTA+AGG - chr7_2:6118752-6118771 None:intergenic 20.0%
!! AAAATAGAACATTAAACTCA+CGG - chr7_2:6118796-6118815 None:intergenic 20.0%
!!! AATGTTCTATTTTTAATTCG+TGG + chr7_2:6118803-6118822 Msa1045870:intron 20.0%
!! ATAGATTTATGAACTATTTG+AGG + chr7_2:6120196-6120215 Msa1045870:intron 20.0%
!! TAAAAAAAAAACCAAGTTCA+GGG - chr7_2:6120296-6120315 None:intergenic 20.0%
!! TTAAAAAAAAAACCAAGTTC+AGG - chr7_2:6120297-6120316 None:intergenic 20.0%
! AACACCTTACTTATTTACTT+TGG + chr7_2:6115929-6115948 Msa1045870:five_prime_UTR 25.0%
! AACTCCAAAGTAAATAAGTA+AGG - chr7_2:6115936-6115955 None:intergenic 25.0%
!!! TATACTCATTTTTTTTGGAG+TGG + chr7_2:6115963-6115982 Msa1045870:five_prime_UTR 25.0%
! ACAGTCATTGGATATTTAAT+TGG - chr7_2:6116593-6116612 None:intergenic 25.0%
! CAATTATTGTATACAGTCAT+TGG - chr7_2:6116605-6116624 None:intergenic 25.0%
! TAAGAACTAACATGTAAAAG+TGG + chr7_2:6116700-6116719 Msa1045870:intron 25.0%
! ACTCTCTACAATTATCTATT+TGG - chr7_2:6116898-6116917 None:intergenic 25.0%
!!! ACAACTTAATTTGTAGCTTA+CGG + chr7_2:6117187-6117206 Msa1045870:intron 25.0%
! AAAATAAAGTCAAATTGCGT+AGG + chr7_2:6117264-6117283 Msa1045870:intron 25.0%
! TTGTCAGAATAATACTTAGT+GGG + chr7_2:6117459-6117478 Msa1045870:intron 25.0%
! TCAAATATACACCAAGTATA+TGG - chr7_2:6117630-6117649 None:intergenic 25.0%
!!! TACTTGGTGTATATTTGAAT+TGG + chr7_2:6117632-6117651 Msa1045870:intron 25.0%
! ATTCATTATAAACTTGAGGT+TGG - chr7_2:6117751-6117770 None:intergenic 25.0%
! ATGATCTTTATGAGAAACAA+GGG + chr7_2:6117902-6117921 Msa1045870:CDS 25.0%
! TAACATAAATTATTACCGCT+GGG - chr7_2:6118014-6118033 None:intergenic 25.0%
! ATAACATAAATTATTACCGC+TGG - chr7_2:6118015-6118034 None:intergenic 25.0%
! GTAATAATGAAAGACTTGTA+TGG + chr7_2:6118061-6118080 Msa1045870:intron 25.0%
!!! TTACAACTCTTAAAAGTGTT+TGG - chr7_2:6118178-6118197 None:intergenic 25.0%
! TGGTATTAGTATATGATTGA+TGG - chr7_2:6118324-6118343 None:intergenic 25.0%
! AAATAGAACATTAAACTCAC+GGG - chr7_2:6118795-6118814 None:intergenic 25.0%
! TAAAATTACATGATCATGCA+GGG + chr7_2:6118833-6118852 Msa1045870:intron 25.0%
! TCAATTTATGATCAAACTGA+TGG + chr7_2:6118942-6118961 Msa1045870:CDS 25.0%
! GAATCTTAATATACACATTG+GGG - chr7_2:6119067-6119086 None:intergenic 25.0%
! GGAATCTTAATATACACATT+GGG - chr7_2:6119068-6119087 None:intergenic 25.0%
! TGGAATCTTAATATACACAT+TGG - chr7_2:6119069-6119088 None:intergenic 25.0%
! TATGTTAACATGCTATAAGT+TGG + chr7_2:6119214-6119233 Msa1045870:intron 25.0%
! ATGTTAACATGCTATAAGTT+GGG + chr7_2:6119215-6119234 Msa1045870:intron 25.0%
!! ATAATCAACATAATAATGGG+TGG + chr7_2:6119274-6119293 Msa1045870:intron 25.0%
!!! TCACTTTTCCAAATTATTAC+TGG - chr7_2:6119390-6119409 None:intergenic 25.0%
! CTTCTAAATGAAGATGTATT+TGG - chr7_2:6119473-6119492 None:intergenic 25.0%
! ACAAATGTATATTTAGACTC+CGG - chr7_2:6119599-6119618 None:intergenic 25.0%
!! AAAATTTCTTTTGGTATAGC+TGG - chr7_2:6119951-6119970 None:intergenic 25.0%
!! CTATACCAAAAGAAATTTTC+TGG + chr7_2:6119952-6119971 Msa1045870:CDS 25.0%
! GGATTATTGAAAAAATGTGA+TGG - chr7_2:6120110-6120129 None:intergenic 25.0%
! TTCAATAATCCATTTGCTTA+TGG + chr7_2:6120119-6120138 Msa1045870:intron 25.0%
! AAACTGAAGAAAATACTACT+TGG - chr7_2:6120166-6120185 None:intergenic 25.0%
!! CTATTTGAGGATTTTCAAAA+AGG + chr7_2:6120209-6120228 Msa1045870:intron 25.0%
!! GAACATTTTTGACAATTTCA+GGG - chr7_2:6120265-6120284 None:intergenic 25.0%
!! TGAACATTTTTGACAATTTC+AGG - chr7_2:6120266-6120285 None:intergenic 25.0%
! CTTGTTAGGAATTTGTAATT+AGG - chr7_2:6120460-6120479 None:intergenic 25.0%
! CTTGATTATGTTAACAAACT+TGG + chr7_2:6120560-6120579 Msa1045870:intron 25.0%
! ACATAAAATGACATCAGATT+TGG - chr7_2:6121239-6121258 None:intergenic 25.0%
ACCTCAAAGAAGTTACAAAA+CGG - chr7_2:6116354-6116373 None:intergenic 30.0%
!!! TTCATGCTTATTTTTGCATG+CGG + chr7_2:6116404-6116423 Msa1045870:intron 30.0%
GATTAATTTCTATCCACTGA+CGG + chr7_2:6116831-6116850 Msa1045870:intron 30.0%
TCTATTTGGCATCATTTGAT+TGG - chr7_2:6116884-6116903 None:intergenic 30.0%
GCATTATGGAATGATTTGAT+TGG + chr7_2:6116979-6116998 Msa1045870:intron 30.0%
!!! GTTTTTTCATTGGTTCTGTT+TGG + chr7_2:6117160-6117179 Msa1045870:intron 30.0%
TTGGCTTATTTACTGACATA+AGG - chr7_2:6117408-6117427 None:intergenic 30.0%
ATTAAAGTTAAAGGGCTGTT+TGG - chr7_2:6117432-6117451 None:intergenic 30.0%
CTTGTCAGAATAATACTTAG+TGG + chr7_2:6117458-6117477 Msa1045870:intron 30.0%
ACAGTATAACACCATGATTT+CGG - chr7_2:6117585-6117604 None:intergenic 30.0%
ATATACACCAAGTATATGGT+TGG - chr7_2:6117626-6117645 None:intergenic 30.0%
TTGGTGTATATTTGAATTGG+TGG + chr7_2:6117635-6117654 Msa1045870:intron 30.0%
! TGTTGCTATTGTCAAAATCA+TGG + chr7_2:6117707-6117726 Msa1045870:intron 30.0%
! CCTCAATATAAATGTCGATT+AGG - chr7_2:6117793-6117812 None:intergenic 30.0%
CCTAATCGACATTTATATTG+AGG + chr7_2:6117790-6117809 Msa1045870:intron 30.0%
CATGATCTTTATGAGAAACA+AGG + chr7_2:6117901-6117920 Msa1045870:CDS 30.0%
! CGAAGATATTTTTCTATCCT+AGG + chr7_2:6118109-6118128 Msa1045870:intron 30.0%
TGTTGTCAAATTGTAGATGT+AGG - chr7_2:6118582-6118601 None:intergenic 30.0%
TCACGGGAATATAATACTTA+AGG - chr7_2:6118779-6118798 None:intergenic 30.0%
!!! TCTATTTTTAATTCGTGGTG+TGG + chr7_2:6118808-6118827 Msa1045870:intron 30.0%
CTAAAATTACATGATCATGC+AGG + chr7_2:6118832-6118851 Msa1045870:intron 30.0%
ATTTATGATCAAACTGATGG+AGG + chr7_2:6118945-6118964 Msa1045870:CDS 30.0%
CGATAACTTCCTTAATTGAA+GGG - chr7_2:6119109-6119128 None:intergenic 30.0%
! TGTTGATTATATCAAGGACA+AGG - chr7_2:6119264-6119283 None:intergenic 30.0%
TGTTGACACCAGTAATAATT+TGG + chr7_2:6119379-6119398 Msa1045870:intron 30.0%
GGAGTCTAAATATACATTTG+TGG + chr7_2:6119598-6119617 Msa1045870:intron 30.0%
TACAGCTTCATATCTTTCAA+GGG - chr7_2:6119641-6119660 None:intergenic 30.0%
TTACAGCTTCATATCTTTCA+AGG - chr7_2:6119642-6119661 None:intergenic 30.0%
GCAATAAAGAAAAGAGTAAG+CGG - chr7_2:6119824-6119843 None:intergenic 30.0%
! TTATTGCCAATTTTTGCGTT+TGG + chr7_2:6119837-6119856 Msa1045870:intron 30.0%
TCAAATCCAAACGCAAAAAT+TGG - chr7_2:6119846-6119865 None:intergenic 30.0%
AATAAGAGGAGCAACATATA+AGG - chr7_2:6120070-6120089 None:intergenic 30.0%
TTATATGTTGCTCCTCTTAT+TGG + chr7_2:6120069-6120088 Msa1045870:CDS 30.0%
TGAAAAAATGTGATGGCTTA+CGG - chr7_2:6120103-6120122 None:intergenic 30.0%
CCATAATAACCATAAGCAAA+TGG - chr7_2:6120131-6120150 None:intergenic 30.0%
CCATTTGCTTATGGTTATTA+TGG + chr7_2:6120128-6120147 Msa1045870:intron 30.0%
TACAAATTCCTAACAAGTTC+AGG + chr7_2:6120463-6120482 Msa1045870:intron 30.0%
ACAAATTCCTAACAAGTTCA+GGG + chr7_2:6120464-6120483 Msa1045870:intron 30.0%
! ATTAAATCCCTGAACTTGTT+AGG - chr7_2:6120474-6120493 None:intergenic 30.0%
TCTTTAATGAACATCTCGTT+AGG + chr7_2:6120537-6120556 Msa1045870:intron 30.0%
GTAATGTTAGTTCAGGTATT+AGG - chr7_2:6120598-6120617 None:intergenic 30.0%
CACAGATGATTTATCATTCT+AGG - chr7_2:6120985-6121004 None:intergenic 30.0%
! CATTGTTAGTCTGAAATTCT+TGG + chr7_2:6121014-6121033 Msa1045870:three_prime_UTR 30.0%
!!! TACTTTGTATGCTGGTTTTT+AGG + chr7_2:6121070-6121089 Msa1045870:three_prime_UTR 30.0%
!!! ACTTTGTATGCTGGTTTTTA+GGG + chr7_2:6121071-6121090 Msa1045870:three_prime_UTR 30.0%
! AGTCGAGATTTAAAATTGCA+TGG - chr7_2:6121122-6121141 None:intergenic 30.0%
! GTAAATAAGTAAGGTGTTCG+AGG - chr7_2:6115927-6115946 None:intergenic 35.0%
AACAATGGCTTCTTCACTTT+CGG + chr7_2:6116177-6116196 Msa1045870:exon 35.0%
TTCTTAAAGAAGAAGCAGAG+AGG - chr7_2:6116318-6116337 None:intergenic 35.0%
! ACCGTTTTGTAACTTCTTTG+AGG + chr7_2:6116350-6116369 Msa1045870:CDS 35.0%
!!! CGATGTGTTTTGTTGTTGTA+AGG + chr7_2:6116506-6116525 Msa1045870:intron 35.0%
! GTTGTAAGGATGTGTTTTGT+TGG + chr7_2:6116520-6116539 Msa1045870:intron 35.0%
GAAAATATTTACACCGTCAG+TGG - chr7_2:6116847-6116866 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTAAGT+TGG + chr7_2:6117292-6117311 Msa1045870:intron 35.0%
TCAGAATAATACTTAGTGGG+TGG + chr7_2:6117462-6117481 Msa1045870:intron 35.0%
TGGTGAGTTATGCAAAATCA+CGG + chr7_2:6117655-6117674 Msa1045870:intron 35.0%
GTCGATTAGGAAACAAAACA+AGG - chr7_2:6117780-6117799 None:intergenic 35.0%
ATTAGATGCTCACAAACAGA+TGG + chr7_2:6117847-6117866 Msa1045870:CDS 35.0%
CTGATTCCTCTTATTGAAAG+TGG + chr7_2:6117967-6117986 Msa1045870:CDS 35.0%
CTAACACCACTTTCAATAAG+AGG - chr7_2:6117976-6117995 None:intergenic 35.0%
! CTTATTGAAAGTGGTGTTAG+AGG + chr7_2:6117976-6117995 Msa1045870:CDS 35.0%
ATATCTTCGCACAAGTAGAA+CGG - chr7_2:6118098-6118117 None:intergenic 35.0%
GTGCTTACAATGATCAATTC+AGG + chr7_2:6118296-6118315 Msa1045870:CDS 35.0%
CAATAAAGTAGAGTAAACCG+TGG + chr7_2:6118370-6118389 Msa1045870:intron 35.0%
GAGTAATACAACGATTATGC+AGG - chr7_2:6118436-6118455 None:intergenic 35.0%
TAGCTTGGTAAACTACACAA+AGG + chr7_2:6118493-6118512 Msa1045870:intron 35.0%
! TTTCTGTTGAAGTATCTCCT+AGG + chr7_2:6118979-6118998 Msa1045870:CDS 35.0%
TGCAAAATGGCTTCATAAAG+TGG + chr7_2:6119034-6119053 Msa1045870:CDS 35.0%
GCGATAACTTCCTTAATTGA+AGG - chr7_2:6119110-6119129 None:intergenic 35.0%
ATTAAGGAAGTTATCGCCAA+TGG + chr7_2:6119113-6119132 Msa1045870:CDS 35.0%
GTTATGCTAGTTAGAAGTGA+GGG + chr7_2:6119304-6119323 Msa1045870:intron 35.0%
TTGAATGTAACCTCATGTGT+TGG + chr7_2:6119410-6119429 Msa1045870:intron 35.0%
! ATTTGGTGAATGACATGTGT+CGG - chr7_2:6119456-6119475 None:intergenic 35.0%
!! GATTACTTTTACCATGTTGC+CGG + chr7_2:6119577-6119596 Msa1045870:intron 35.0%
AGCTGTAATTGATGCTTACT+TGG + chr7_2:6119654-6119673 Msa1045870:CDS 35.0%
GTAATTGATGCTTACTTGGA+CGG + chr7_2:6119658-6119677 Msa1045870:CDS 35.0%
GACAAGATGCTTGAGAAAAT+TGG + chr7_2:6119763-6119782 Msa1045870:CDS 35.0%
! TTGGGCCAGAAAATTTCTTT+TGG - chr7_2:6119960-6119979 None:intergenic 35.0%
!! AAAAGAAATTTTCTGGCCCA+AGG + chr7_2:6119959-6119978 Msa1045870:CDS 35.0%
! TGGGAAGCTCTAGTTAAAAA+AGG + chr7_2:6119982-6120001 Msa1045870:CDS 35.0%
! GGGAAGCTCTAGTTAAAAAA+GGG + chr7_2:6119983-6120002 Msa1045870:CDS 35.0%
! GGAAGCTCTAGTTAAAAAAG+GGG + chr7_2:6119984-6120003 Msa1045870:CDS 35.0%
! AACATATAAGGTGTCAGGAT+AGG - chr7_2:6120058-6120077 None:intergenic 35.0%
TTCATTTAGATCCCTGAACT+TGG + chr7_2:6120282-6120301 Msa1045870:intron 35.0%
TGAGAAGGTAATGTTAGTTC+AGG - chr7_2:6120605-6120624 None:intergenic 35.0%
GTGATCGATAAATGCTTGAA+GGG - chr7_2:6120662-6120681 None:intergenic 35.0%
CTTCAAGCATTTATCGATCA+CGG + chr7_2:6120661-6120680 Msa1045870:CDS 35.0%
ATACAATGCTATCCAGAAGT+TGG + chr7_2:6120732-6120751 Msa1045870:CDS 35.0%
TACAATGCTATCCAGAAGTT+GGG + chr7_2:6120733-6120752 Msa1045870:CDS 35.0%
! TACGGGTTAATAAAAGACAG+CGG + chr7_2:6120931-6120950 Msa1045870:three_prime_UTR 35.0%
TTAATAAAAGACAGCGGCTA+AGG + chr7_2:6120937-6120956 Msa1045870:three_prime_UTR 35.0%
TAATAAAAGACAGCGGCTAA+GGG + chr7_2:6120938-6120957 Msa1045870:three_prime_UTR 35.0%
TTTCCATGTACTTTGTATGC+TGG + chr7_2:6121062-6121081 Msa1045870:three_prime_UTR 35.0%
AAACCAGCATACAAAGTACA+TGG - chr7_2:6121068-6121087 None:intergenic 35.0%
! AGCTAAGAAGCTCGTTTTGA+TGG - chr7_2:6116266-6116285 None:intergenic 40.0%
AGTTAAAGGGCTGTTTGGAT+TGG - chr7_2:6117427-6117446 None:intergenic 40.0%
GCTATTACAAACCGACTGTA+AGG - chr7_2:6117494-6117513 None:intergenic 40.0%
!! ACAGTCGGTTTGTAATAGCA+CGG + chr7_2:6117495-6117514 Msa1045870:intron 40.0%
ACGGTGTTTGACAAAGTTAC+AGG + chr7_2:6117514-6117533 Msa1045870:intron 40.0%
CGGTGTTTGACAAAGTTACA+GGG + chr7_2:6117515-6117534 Msa1045870:intron 40.0%
GGTGTTTGACAAAGTTACAG+GGG + chr7_2:6117516-6117535 Msa1045870:intron 40.0%
TTTCGGCAAAAGCTGCAATT+TGG - chr7_2:6117568-6117587 None:intergenic 40.0%
! CAAGTATATGGTTGGATTGG+TGG - chr7_2:6117618-6117637 None:intergenic 40.0%
CACCAATCCAACCATATACT+TGG + chr7_2:6117616-6117635 Msa1045870:intron 40.0%
CACCAAGTATATGGTTGGAT+TGG - chr7_2:6117621-6117640 None:intergenic 40.0%
TGAGTTATGCAAAATCACGG+TGG + chr7_2:6117658-6117677 Msa1045870:intron 40.0%
TGAGGCAAACATTTGACTGT+TGG + chr7_2:6117808-6117827 Msa1045870:intron 40.0%
GCAAACATTTGACTGTTGGT+TGG + chr7_2:6117812-6117831 Msa1045870:intron 40.0%
TGCTCACAAACAGATGGAAA+TGG + chr7_2:6117853-6117872 Msa1045870:CDS 40.0%
AAGAGGAATCAGATCCGTAA+CGG - chr7_2:6117959-6117978 None:intergenic 40.0%
CTGCAATCATGTGGTATAGA+CGG - chr7_2:6118248-6118267 None:intergenic 40.0%
CTGAAAGATCTGCAATCATG+TGG - chr7_2:6118257-6118276 None:intergenic 40.0%
TAAAGTAGAGTAAACCGTGG+AGG + chr7_2:6118373-6118392 Msa1045870:intron 40.0%
AAGGTCAATGTTGTCAATCC+CGG + chr7_2:6118512-6118531 Msa1045870:intron 40.0%
AATCGCAATTCTCTGTGATC+CGG - chr7_2:6118534-6118553 None:intergenic 40.0%
GTGTACTAAATCGTGTATCG+CGG + chr7_2:6118604-6118623 Msa1045870:intron 40.0%
GCATAGAGAGTTTGGAGAAA+CGG - chr7_2:6118638-6118657 None:intergenic 40.0%
TCTCCAAACTCTCTATGCTA+TGG + chr7_2:6118640-6118659 Msa1045870:intron 40.0%
AAGACATTGACAGTGCATAC+TGG + chr7_2:6118874-6118893 Msa1045870:CDS 40.0%
AGACATTGACAGTGCATACT+GGG + chr7_2:6118875-6118894 Msa1045870:CDS 40.0%
ATACTGGGAACTTGTAGTGA+AGG + chr7_2:6118890-6118909 Msa1045870:CDS 40.0%
GAACCATAGAAGCTGCAAAA+TGG + chr7_2:6119021-6119040 Msa1045870:CDS 40.0%
!! AAGCCATTTTGCAGCTTCTA+TGG - chr7_2:6119027-6119046 None:intergenic 40.0%
TGCATGTGTCCCTTCAATTA+AGG + chr7_2:6119097-6119116 Msa1045870:CDS 40.0%
CACGTTCACACTTATTCCAT+TGG - chr7_2:6119132-6119151 None:intergenic 40.0%
!! CATAATAATGGGTGGTAGCA+AGG + chr7_2:6119282-6119301 Msa1045870:intron 40.0%
GGTTATGCTAGTTAGAAGTG+AGG + chr7_2:6119303-6119322 Msa1045870:intron 40.0%
GTCAATATCAGTGATGTGTC+TGG - chr7_2:6119358-6119377 None:intergenic 40.0%
ATATTTAGACTCCGGCAACA+TGG - chr7_2:6119591-6119610 None:intergenic 40.0%
TATCTGGGTCCTTAAAGTCA+GGG + chr7_2:6120376-6120395 Msa1045870:intron 40.0%
TCATCAAGTCCCTGACTTTA+AGG - chr7_2:6120388-6120407 None:intergenic 40.0%
TACCTTCTCATTTACTTCCC+AGG + chr7_2:6120615-6120634 Msa1045870:intron 40.0%
TACCTGGGAAGTAAATGAGA+AGG - chr7_2:6120620-6120639 None:intergenic 40.0%
CGTGATCGATAAATGCTTGA+AGG - chr7_2:6120663-6120682 None:intergenic 40.0%
TGCATTTGAGTCTATTGTCC+TGG - chr7_2:6120695-6120714 None:intergenic 40.0%
! TCAAATGCATCTGAAGCTGA+AGG + chr7_2:6120706-6120725 Msa1045870:CDS 40.0%
!! TCCAGAAGTTGGGTATTGAT+TGG + chr7_2:6120743-6120762 Msa1045870:CDS 40.0%
TCCAATCAATACCCAACTTC+TGG - chr7_2:6120747-6120766 None:intergenic 40.0%
!! GGTATTGATTGGAGCTATGT+TGG + chr7_2:6120754-6120773 Msa1045870:CDS 40.0%
!! TGTTGGTTCACAGCTTGAAT+TGG + chr7_2:6120771-6120790 Msa1045870:CDS 40.0%
GAAGGCAAAATCTCTTAAGC+TGG + chr7_2:6120849-6120868 Msa1045870:CDS 40.0%
CAAGTGAGGTGTGAACTTTA+TGG + chr7_2:6120876-6120895 Msa1045870:exon 40.0%
! GTCTTTTATTAACCCGTACG+CGG - chr7_2:6120929-6120948 None:intergenic 40.0%
AATAAAAGACAGCGGCTAAG+GGG + chr7_2:6120939-6120958 Msa1045870:three_prime_UTR 40.0%
TGCATGGTGCAATTATTGCA+GGG - chr7_2:6121106-6121125 None:intergenic 40.0%
TTGCATGGTGCAATTATTGC+AGG - chr7_2:6121107-6121126 None:intergenic 40.0%
GACTGTCCGATCTAAATCAA+TGG + chr7_2:6121138-6121157 Msa1045870:three_prime_UTR 40.0%
!! CCTCTGCCATTGATTTAGAT+CGG - chr7_2:6121147-6121166 None:intergenic 40.0%
GTGAACTTAGCTCAGTTGGT+TGG - chr7_2:6116036-6116055 None:intergenic 45.0%
TACAACTATCTCGTTCACGC+TGG - chr7_2:6116143-6116162 None:intergenic 45.0%
! AAAGAAGCGCGGTTTGTGTT+TGG - chr7_2:6116220-6116239 None:intergenic 45.0%
GAGATTCTGGTAAAGAAGCG+CGG - chr7_2:6116231-6116250 None:intergenic 45.0%
GATCTGGATCGAAGAGATTC+TGG - chr7_2:6116244-6116263 None:intergenic 45.0%
!! GAAGCTCGTTTTGATGGATC+TGG - chr7_2:6116260-6116279 None:intergenic 45.0%
TTTGTAGCTTACGGCGTAAG+TGG + chr7_2:6117196-6117215 Msa1045870:intron 45.0%
GGTGGTATTTGCCTTACAGT+CGG + chr7_2:6117480-6117499 Msa1045870:intron 45.0%
! TGCAGCTTTTGCCGAAATCA+TGG + chr7_2:6117571-6117590 Msa1045870:intron 45.0%
ACTTGAGGTTGGCAGAATCA+TGG - chr7_2:6117740-6117759 None:intergenic 45.0%
TGTGAGCATCTAATCCTGCA+AGG - chr7_2:6117841-6117860 None:intergenic 45.0%
GAAATGGAGTTCCTGCAAAG+AGG + chr7_2:6117869-6117888 Msa1045870:CDS 45.0%
CGGCAGAGATTATCATACCA+TGG - chr7_2:6117934-6117953 None:intergenic 45.0%
AGAGGAATCAGATCCGTAAC+GGG - chr7_2:6117958-6117977 None:intergenic 45.0%
ATCGCAATTCTCTGTGATCC+GGG - chr7_2:6118533-6118552 None:intergenic 45.0%
GATCAAACTGATGGAGGTGA+TGG + chr7_2:6118951-6118970 Msa1045870:CDS 45.0%
! CAACACTTGTGACTCTAGAG+AGG - chr7_2:6119708-6119727 None:intergenic 45.0%
TACCTTGCCACGTAGATCAA+GGG - chr7_2:6119800-6119819 None:intergenic 45.0%
TTACCTTGCCACGTAGATCA+AGG - chr7_2:6119801-6119820 None:intergenic 45.0%
!! AGAAATTTTCTGGCCCAAGG+TGG + chr7_2:6119962-6119981 Msa1045870:CDS 45.0%
!! GAAATTTTCTGGCCCAAGGT+GGG + chr7_2:6119963-6119982 Msa1045870:CDS 45.0%
TAACTAGAGCTTCCCACCTT+GGG - chr7_2:6119978-6119997 None:intergenic 45.0%
TTAACTAGAGCTTCCCACCT+TGG - chr7_2:6119979-6119998 None:intergenic 45.0%
AAAAAGGGGCCAAGAAGCAA+AGG + chr7_2:6119998-6120017 Msa1045870:CDS 45.0%
ATAGGCAGGATTCTTAACGC+TGG - chr7_2:6120040-6120059 None:intergenic 45.0%
! TATAAGGTGTCAGGATAGGC+AGG - chr7_2:6120054-6120073 None:intergenic 45.0%
! GGAGCAACATATAAGGTGTC+AGG - chr7_2:6120063-6120082 None:intergenic 45.0%
AATGTGATGGCTTACGGTGT+CGG - chr7_2:6120097-6120116 None:intergenic 45.0%
GTATCTGGGTCCTTAAAGTC+AGG + chr7_2:6120375-6120394 Msa1045870:intron 45.0%
CGATAAATGCTTGAAGGGCT+TGG - chr7_2:6120657-6120676 None:intergenic 45.0%
GGTTCACAGCTTGAATTGGA+AGG + chr7_2:6120775-6120794 Msa1045870:CDS 45.0%
GTAATGTATGATGCCGCGTA+CGG + chr7_2:6120913-6120932 Msa1045870:three_prime_UTR 45.0%
TAATGTATGATGCCGCGTAC+GGG + chr7_2:6120914-6120933 Msa1045870:three_prime_UTR 45.0%
CCGATCTAAATCAATGGCAG+AGG + chr7_2:6121144-6121163 Msa1045870:three_prime_UTR 45.0%
!!! TTAAATAATTGTTTTTTAAT+CGG - chr7_2:6120434-6120453 None:intergenic 5.0%
!! ATTAAAAAACAATTATTTAA+GGG + chr7_2:6120434-6120453 Msa1045870:intron 5.0%
CCTCGTGAACTTAGCTCAGT+TGG - chr7_2:6116040-6116059 None:intergenic 50.0%
CCAACTGAGCTAAGTTCACG+AGG + chr7_2:6116037-6116056 Msa1045870:five_prime_UTR 50.0%
TGGAGTTCCTGCAAAGAGGA+CGG + chr7_2:6117873-6117892 Msa1045870:CDS 50.0%
TGAAGAACCGTCCTCTTTGC+AGG - chr7_2:6117883-6117902 None:intergenic 50.0%
AGAAACAAGGGCAGAGTCCA+TGG + chr7_2:6117914-6117933 Msa1045870:CDS 50.0%
TAATCTCTGCCGACCCGTTA+CGG + chr7_2:6117942-6117961 Msa1045870:CDS 50.0%
!! GAATCAGATCCGTAACGGGT+CGG - chr7_2:6117954-6117973 None:intergenic 50.0%
GAGACATGTCTATGCCTCCA+CGG - chr7_2:6118390-6118409 None:intergenic 50.0%
GCGCCATAGCATAGAGAGTT+TGG - chr7_2:6118646-6118665 None:intergenic 50.0%
TGGCGCGATAGAGATGCTAT+TGG + chr7_2:6118660-6118679 Msa1045870:intron 50.0%
!! AGTATCTCCTAGGCTTGCTG+AGG + chr7_2:6118989-6119008 Msa1045870:CDS 50.0%
TCAGTATCCTCAGCAAGCCT+AGG - chr7_2:6118999-6119018 None:intergenic 50.0%
!! AGGCTTGCTGAGGATACTGA+AGG + chr7_2:6118999-6119018 Msa1045870:CDS 50.0%
TGATGCTTACTTGGACGGTC+TGG + chr7_2:6119663-6119682 Msa1045870:CDS 50.0%
CACTCGACTGACAAAGAACG+AGG - chr7_2:6119731-6119750 None:intergenic 50.0%
CTCGTTCTTTGTCAGTCGAG+TGG + chr7_2:6119729-6119748 Msa1045870:CDS 50.0%
ACGTAGATCAAGGGCTTCTG+GGG - chr7_2:6119791-6119810 None:intergenic 50.0%
CACGTAGATCAAGGGCTTCT+GGG - chr7_2:6119792-6119811 None:intergenic 50.0%
CAAGAAGCAAAGGCTCCTGT+GGG + chr7_2:6120008-6120027 Msa1045870:CDS 50.0%
ATGTGATGGCTTACGGTGTC+GGG - chr7_2:6120096-6120115 None:intergenic 50.0%
GTCTGGCATGGTAGATACCT+GGG - chr7_2:6120635-6120654 None:intergenic 50.0%
! AATGCTTGAAGGGCTTGGTC+TGG - chr7_2:6120652-6120671 None:intergenic 50.0%
TGAATCCAGGAGGCTGTCAA+AGG - chr7_2:6120821-6120840 None:intergenic 50.0%
CTTAAGCTGGTCAGCAAGTG+AGG + chr7_2:6120862-6120881 Msa1045870:CDS 50.0%
! CTGTTGGTTGGTGTCCTTGC+AGG + chr7_2:6117824-6117843 Msa1045870:intron 55.0%
TGCAGGGAACTTGTGCAAGC+AGG + chr7_2:6118849-6118868 Msa1045870:intron 55.0%
GCAGGGAACTTGTGCAAGCA+GGG + chr7_2:6118850-6118869 Msa1045870:intron 55.0%
CGAAGCGACACCAACACATG+AGG - chr7_2:6119423-6119442 None:intergenic 55.0%
TGCTTACTTGGACGGTCTGG+AGG + chr7_2:6119666-6119685 Msa1045870:CDS 55.0%
CCACGTAGATCAAGGGCTTC+TGG - chr7_2:6119793-6119812 None:intergenic 55.0%
CCAGAAGCCCTTGATCTACG+TGG + chr7_2:6119790-6119809 Msa1045870:CDS 55.0%
AGCCCTTGATCTACGTGGCA+AGG + chr7_2:6119795-6119814 Msa1045870:CDS 55.0%
!! CTGGTAAGCCAGTGCTGCTT+GGG - chr7_2:6119932-6119951 None:intergenic 55.0%
CCACAGGAGCCTTTGCTTCT+TGG - chr7_2:6120010-6120029 None:intergenic 55.0%
CCAAGAAGCAAAGGCTCCTG+TGG + chr7_2:6120007-6120026 Msa1045870:CDS 55.0%
! TAACGCTGGTTGAAGCCCAC+AGG - chr7_2:6120026-6120045 None:intergenic 55.0%
! ACGGTGTCGGGTCCAATAAG+AGG - chr7_2:6120084-6120103 None:intergenic 55.0%
GGTCTGGCATGGTAGATACC+TGG - chr7_2:6120636-6120655 None:intergenic 55.0%
! TTGAAGGGCTTGGTCTGGCA+TGG - chr7_2:6120647-6120666 None:intergenic 55.0%
GAAAGCCTTTGACAGCCTCC+TGG + chr7_2:6120813-6120832 Msa1045870:CDS 55.0%
TCTCCTGCAGTGAATCCAGG+AGG - chr7_2:6120831-6120850 None:intergenic 55.0%
CCTTCTCCTGCAGTGAATCC+AGG - chr7_2:6120834-6120853 None:intergenic 55.0%
CCTGGATTCACTGCAGGAGA+AGG + chr7_2:6120831-6120850 Msa1045870:CDS 55.0%
AGGCGTCACTAGCAACCCAG+CGG + chr7_2:6117996-6118015 Msa1045870:CDS 60.0%
GGGACACATGCAGCTGTAGC+TGG - chr7_2:6119089-6119108 None:intergenic 60.0%
!! TTGGACGGTCTGGAGGCATC+TGG + chr7_2:6119673-6119692 Msa1045870:CDS 60.0%
!! TGGACGGTCTGGAGGCATCT+GGG + chr7_2:6119674-6119693 Msa1045870:CDS 60.0%
AGCAGTAGCCCAAGCAGCAC+TGG + chr7_2:6119921-6119940 Msa1045870:CDS 60.0%
! GCTGGTAAGCCAGTGCTGCT+TGG - chr7_2:6119933-6119952 None:intergenic 60.0%
!! TCGATCACGGTGCTGTAGCC+AGG + chr7_2:6120674-6120693 Msa1045870:CDS 60.0%
CAGCCTCCTGGATTCACTGC+AGG + chr7_2:6120825-6120844 Msa1045870:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 6115901 6121280 6115901 ID=Msa1045870;Name=Msa1045870
chr7_2 mRNA 6115901 6121280 6115901 ID=Msa1045870-mRNA-1;Parent=Msa1045870;Name=Msa1045870-mRNA-1;_AED=0.03;_eAED=0.03;_QI=280|1|1|1|1|1|7|398|443
chr7_2 exon 6115901 6116371 6115901 ID=Msa1045870-mRNA-1:exon:1325;Parent=Msa1045870-mRNA-1
chr7_2 exon 6117846 6118017 6117846 ID=Msa1045870-mRNA-1:exon:1326;Parent=Msa1045870-mRNA-1
chr7_2 exon 6118268 6118317 6118268 ID=Msa1045870-mRNA-1:exon:1327;Parent=Msa1045870-mRNA-1
chr7_2 exon 6118854 6119154 6118854 ID=Msa1045870-mRNA-1:exon:1328;Parent=Msa1045870-mRNA-1
chr7_2 exon 6119628 6119816 6119628 ID=Msa1045870-mRNA-1:exon:1329;Parent=Msa1045870-mRNA-1
chr7_2 exon 6119919 6120101 6119919 ID=Msa1045870-mRNA-1:exon:1330;Parent=Msa1045870-mRNA-1
chr7_2 exon 6120637 6121280 6120637 ID=Msa1045870-mRNA-1:exon:1331;Parent=Msa1045870-mRNA-1
chr7_2 five_prime_UTR 6115901 6116180 6115901 ID=Msa1045870-mRNA-1:five_prime_utr;Parent=Msa1045870-mRNA-1
chr7_2 CDS 6116181 6116371 6116181 ID=Msa1045870-mRNA-1:cds;Parent=Msa1045870-mRNA-1
chr7_2 CDS 6117846 6118017 6117846 ID=Msa1045870-mRNA-1:cds;Parent=Msa1045870-mRNA-1
chr7_2 CDS 6118268 6118317 6118268 ID=Msa1045870-mRNA-1:cds;Parent=Msa1045870-mRNA-1
chr7_2 CDS 6118854 6119154 6118854 ID=Msa1045870-mRNA-1:cds;Parent=Msa1045870-mRNA-1
chr7_2 CDS 6119628 6119816 6119628 ID=Msa1045870-mRNA-1:cds;Parent=Msa1045870-mRNA-1
chr7_2 CDS 6119919 6120101 6119919 ID=Msa1045870-mRNA-1:cds;Parent=Msa1045870-mRNA-1
chr7_2 CDS 6120637 6120882 6120637 ID=Msa1045870-mRNA-1:cds;Parent=Msa1045870-mRNA-1
chr7_2 three_prime_UTR 6120883 6121280 6120883 ID=Msa1045870-mRNA-1:three_prime_utr;Parent=Msa1045870-mRNA-1
Gene Sequence

>Msa1045870

ATGGCTTCTTCACTTTCGGTTTCGAAGATCACAACACCAAACACAAACCGCGCTTCTTTACCAGAATCTCTTCGATCCAGATCCATCAAAACGAGCTTCTTAGCTTTCAACAATACAAATGATTTCAAAACTAACCTCTCTGCTTCTTCTTTAAGAACAACTCGTGAAAACCGTTTTGTAACTTCTTTGAGGATTAGATGCTCACAAACAGATGGAAATGGAGTTCCTGCAAAGAGGACGGTTCTTCATGATCTTTATGAGAAACAAGGGCAGAGTCCATGGTATGATAATCTCTGCCGACCCGTTACGGATCTGATTCCTCTTATTGAAAGTGGTGTTAGAGGCGTCACTAGCAACCCAGCGATCTTTCAGAAAGCTATTTCATCTTCAAGTGCTTACAATGATCAATTCAGGGAACTTGTGCAAGCAGGGAAAGACATTGACAGTGCATACTGGGAACTTGTAGTGAAGGACATTCAAGATGCTTGCAAACTATTTGAATCAATTTATGATCAAACTGATGGAGGTGATGGCTATGTTTCTGTTGAAGTATCTCCTAGGCTTGCTGAGGATACTGAAGGAACCATAGAAGCTGCAAAATGGCTTCATAAAGTGGTTTCTCGCCCCAATGTGTATATTAAGATTCCAGCTACAGCTGCATGTGTCCCTTCAATTAAGGAAGTTATCGCCAATGGAATAAGTGTGAACGTGACTCTGATATTCTCCCTTGAAAGATATGAAGCTGTAATTGATGCTTACTTGGACGGTCTGGAGGCATCTGGGTTAAATGACCTCTCTAGAGTCACAAGTGTTGCCTCGTTCTTTGTCAGTCGAGTGGACACTCTCATTGACAAGATGCTTGAGAAAATTGGCACCCCAGAAGCCCTTGATCTACGTGGCAAGGCAGCAGTAGCCCAAGCAGCACTGGCTTACCAGCTATACCAAAAGAAATTTTCTGGCCCAAGGTGGGAAGCTCTAGTTAAAAAAGGGGCCAAGAAGCAAAGGCTCCTGTGGGCTTCAACCAGCGTTAAGAATCCTGCCTATCCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACCGTATCTACCATGCCAGACCAAGCCCTTCAAGCATTTATCGATCACGGTGCTGTAGCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACAATGCTATCCAGAAGTTGGGTATTGATTGGAGCTATGTTGGTTCACAGCTTGAATTGGAAGGAGTTGATTCATTCAAGAAAGCCTTTGACAGCCTCCTGGATTCACTGCAGGAGAAGGCAAAATCTCTTAAGCTGGTCAGCAAGTGA

Protein sequence

>Msa1045870

MASSLSVSKITTPNTNRASLPESLRSRSIKTSFLAFNNTNDFKTNLSASSLRTTRENRFVTSLRIRCSQTDGNGVPAKRTVLHDLYEKQGQSPWYDNLCRPVTDLIPLIESGVRGVTSNPAIFQKAISSSSAYNDQFRELVQAGKDIDSAYWELVVKDIQDACKLFESIYDQTDGGDGYVSVEVSPRLAEDTEGTIEAAKWLHKVVSRPNVYIKIPATAACVPSIKEVIANGISVNVTLIFSLERYEAVIDAYLDGLEASGLNDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFIDHGAVARTIDSNASEAEGIYNAIQKLGIDWSYVGSQLELEGVDSFKKAFDSLLDSLQEKAKSLKLVSK*