AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1228600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1228600 MtrunA17_Chr4g0001471 96.825 378 9 1 1 378 5 379 0.0 746
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1228600 AT1G73060.1 72.487 378 82 3 1 377 1 357 0.0 532

Find 96 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTATAATCATACATATT+TGG 0.213712 8_2:+4045213 None:intergenic
TAAACAGATACACCTGATTT+AGG 0.217240 8_2:+4050551 None:intergenic
CAGCAACATTTCTTCATATA+AGG 0.266428 8_2:-4049264 Msa1228600:intron
GACCCTCAACAGTTCTTCTT+TGG 0.277713 8_2:+4045945 None:intergenic
TGAATTCGCAGTGCTGATTT+AGG 0.279676 8_2:-4047074 Msa1228600:intron
AGTGCTGATTTAGGCCTTCT+AGG 0.283454 8_2:-4047065 Msa1228600:CDS
AAAGCGGTATTGCAAATCTT+TGG 0.283496 8_2:+4047034 None:intergenic
AATAAAAGTGTTGGGGTTGA+TGG 0.284314 8_2:+4047215 None:intergenic
CCACTGTAATTGACAATATA+AGG 0.298504 8_2:+4046835 None:intergenic
GCTTTGTCCTCGTATTTCTT+TGG 0.302301 8_2:+4045349 None:intergenic
GTGTTGTGTGGCACTGAAAT+TGG 0.317840 8_2:+4050766 None:intergenic
AAATTGGCTCAGCACAAATA+TGG 0.323793 8_2:+4050782 None:intergenic
CAAGATTAAATAAAAGTGTT+GGG 0.358312 8_2:+4047207 None:intergenic
AATTTCTACGAAGAGGCTAT+AGG 0.362385 8_2:-4045888 Msa1228600:CDS
CTTTGGGTGGGAAGCCTAGA+AGG 0.376335 8_2:+4047051 None:intergenic
AAGCGGTATTGCAAATCTTT+GGG 0.399943 8_2:+4047035 None:intergenic
GTGGGAAGAAGATTCTGATT+TGG 0.401550 8_2:-4045537 Msa1228600:CDS
TTAGGATCGAAACCACGATT+TGG 0.404526 8_2:+4050569 None:intergenic
ATTTCTACGAAGAGGCTATA+GGG 0.409617 8_2:-4045887 Msa1228600:intron
AAGGTTGATGGCCTTACTAT+AGG 0.409941 8_2:-4048352 Msa1228600:CDS
GAAGAACTGTTGAGGGTCCT+TGG 0.419306 8_2:-4045940 Msa1228600:CDS
TTACTCCAGTGTTCTACATT+CGG 0.425820 8_2:-4047001 Msa1228600:CDS
TCCTGCAGGGATATCATCTA+AGG 0.428313 8_2:+4048327 None:intergenic
CTTATATGAAGAAATGTTGC+TGG 0.430887 8_2:+4049265 None:intergenic
CCTCTTCTTCTTGAAGTCCA+AGG 0.433964 8_2:+4045923 None:intergenic
CGTGGTTTCGATCCTAAATC+AGG 0.444850 8_2:-4050563 Msa1228600:CDS
TGCCAACATTCAACTTGTCT+TGG 0.448124 8_2:-4048777 Msa1228600:CDS
TCATAAATCGTTCAGGTCCC+TGG 0.448130 8_2:-4046127 Msa1228600:intron
TTGCTTAAGCATCACCTGCC+AGG 0.449595 8_2:+4046109 None:intergenic
GCGAGAACTTCATAAGACTT+AGG 0.454079 8_2:+4050524 None:intergenic
TCAGTTGTTCAAAGCAGCTC+TGG 0.458399 8_2:-4048561 Msa1228600:CDS
CATCTTCAAAGTCAAAATCA+AGG 0.471831 8_2:+4048269 None:intergenic
AATGAAGCCACAGGTCCTGC+AGG 0.472666 8_2:+4048313 None:intergenic
TCAAGATTAAATAAAAGTGT+TGG 0.473701 8_2:+4047206 None:intergenic
TACATTAATTAAACTGTGCA+TGG 0.475186 8_2:+4045147 None:intergenic
TTAGTAGTAGAAATTGAAGA+AGG 0.484021 8_2:+4050662 None:intergenic
GACTTTGAAGATGAGAATGA+AGG 0.486387 8_2:-4048259 Msa1228600:intron
AATAGCAGTACACGTGAACT+TGG 0.489119 8_2:-4048010 Msa1228600:CDS
ATATAGCTGTACCAGGGTAC+TGG 0.490688 8_2:+4046800 None:intergenic
TGAAGAAATGTTGCTGGGCA+AGG 0.493271 8_2:+4049271 None:intergenic
TTCTTAGAAGTGCAGGTCGT+TGG 0.503758 8_2:-4048069 Msa1228600:intron
GAAGAAGGTGAAGAAGATAG+TGG 0.505084 8_2:+4050677 None:intergenic
AGTGCAACTCGCTTCACCCT+TGG 0.516086 8_2:-4046056 Msa1228600:CDS
TCCTTAGATGATATCCCTGC+AGG 0.518676 8_2:-4048328 Msa1228600:CDS
GGCCAAAGAAGAACTGTTGA+GGG 0.520188 8_2:-4045947 Msa1228600:CDS
GGAAGAAAAGTGAGGTTGTG+AGG 0.531314 8_2:+4050713 None:intergenic
GATAGTGGAGAAAGATGTGA+AGG 0.532078 8_2:+4050692 None:intergenic
ACATTAATTAAACTGTGCAT+GGG 0.546350 8_2:+4045148 None:intergenic
CATCTAAGGAGCCTATAGTA+AGG 0.549669 8_2:+4048341 None:intergenic
CGGTATTGCAAATCTTTGGG+TGG 0.549941 8_2:+4047038 None:intergenic
GACCATTGCGTGCGTGTGGA+TGG 0.550921 8_2:+4045451 None:intergenic
AAATCGTTCAGGTCCCTGGC+AGG 0.556462 8_2:-4046123 Msa1228600:intron
TGCTTAAGCATCACCTGCCA+GGG 0.558854 8_2:+4046110 None:intergenic
GAAGAAATGTTGCTGGGCAA+GGG 0.561828 8_2:+4049272 None:intergenic
TGGTTATATTGAGAAGTATG+TGG 0.564545 8_2:-4047990 Msa1228600:intron
AGCCAAGACAAGTTGAATGT+TGG 0.570943 8_2:+4048775 None:intergenic
TTATATGAAGAAATGTTGCT+GGG 0.572669 8_2:+4049266 None:intergenic
AAGATTAAATAAAAGTGTTG+GGG 0.574401 8_2:+4047208 None:intergenic
TGCTCATATGCAGAGAAAGA+AGG 0.579598 8_2:-4045422 Msa1228600:three_prime_UTR
GCTGTGTTTCGCCAGTACCC+TGG 0.579836 8_2:-4046811 Msa1228600:intron
AGCCATTGTGTTGTGTTGTG+TGG 0.580910 8_2:+4050754 None:intergenic
TTAATGAATATGTAGAGCGA+TGG 0.581715 8_2:+4048031 None:intergenic
CCTTGGACTTCAAGAAGAAG+AGG 0.584366 8_2:-4045923 Msa1228600:CDS
ACAACACAACACAATGGCTA+TGG 0.586767 8_2:-4050750 Msa1228600:exon
ATGAATATGTAGAGCGATGG+AGG 0.586924 8_2:+4048034 None:intergenic
TCTCTAGAATTTCTACGAAG+AGG 0.589731 8_2:-4045895 Msa1228600:CDS
CCTCTAGCAATGTTCTACTC+AGG 0.589927 8_2:+4045493 None:intergenic
ATTGCAGTCAAGCACGTGGT+GGG 0.590052 8_2:-4045555 Msa1228600:intron
CTGATCCGAATGTAGAACAC+TGG 0.590070 8_2:+4046996 None:intergenic
GGTATTGCAAATCTTTGGGT+GGG 0.594858 8_2:+4047039 None:intergenic
GTCCATCCACACGCACGCAA+TGG 0.598992 8_2:-4045453 Msa1228600:three_prime_UTR
AGGCCAAAGAAGAACTGTTG+AGG 0.601043 8_2:-4045948 Msa1228600:CDS
ATCTTCAAAGTCAAAATCAA+GGG 0.605002 8_2:+4048270 None:intergenic
CCTTATATTGTCAATTACAG+TGG 0.607987 8_2:-4046835 Msa1228600:CDS
CGATGACCATTGCGTGCGTG+TGG 0.608899 8_2:+4045447 None:intergenic
TGATATCCCTGCAGGACCTG+TGG 0.610302 8_2:-4048320 Msa1228600:CDS
ATCTTGAGCTAGATACACTA+CGG 0.610940 8_2:-4047190 Msa1228600:intron
TCATGAACTTACTTCACCAA+GGG 0.622484 8_2:+4046040 None:intergenic
ATGAAGCCACAGGTCCTGCA+GGG 0.630187 8_2:+4048314 None:intergenic
ATTTGGAAGTATCATCTGCA+TGG 0.634373 8_2:-4045520 Msa1228600:CDS
TCTTCATCAGAGCCAAATCG+TGG 0.636063 8_2:-4050581 Msa1228600:CDS
CATTAATTAAACTGTGCATG+GGG 0.637978 8_2:+4045149 None:intergenic
TACACAAGCATAAGAACCAT+CGG 0.638469 8_2:+4046085 None:intergenic
TATTGCAGTCAAGCACGTGG+TGG 0.640120 8_2:-4045556 Msa1228600:intron
TTCATGAACTTACTTCACCA+AGG 0.640836 8_2:+4046039 None:intergenic
GTGATGCTTAAGCAAACCGA+TGG 0.643172 8_2:-4046101 Msa1228600:CDS
CTTGGACTTCAAGAAGAAGA+GGG 0.644314 8_2:-4045922 Msa1228600:CDS
GAGTAAATTGAGAAAGAAAG+CGG 0.647482 8_2:+4047018 None:intergenic
TCGGATCAGAGATTATTCAA+AGG 0.660666 8_2:-4046982 Msa1228600:intron
CCTGAGTAGAACATTGCTAG+AGG 0.675597 8_2:-4045493 Msa1228600:exon
GATGTGAAGGAAGAAAAGTG+AGG 0.687118 8_2:+4050705 None:intergenic
TGATATTGCAGTCAAGCACG+TGG 0.691851 8_2:-4045559 Msa1228600:intron
AGCTGCTTTGAACAACTGAG+AGG 0.692149 8_2:+4048565 None:intergenic
GAGTAGAACATTGCTAGAGG+AGG 0.693732 8_2:-4045490 Msa1228600:three_prime_UTR
TGGAAGTATCATCTGCATGG+CGG 0.725682 8_2:-4045517 Msa1228600:CDS
TGCCACACAACACAACACAA+TGG 0.730050 8_2:-4050756 Msa1228600:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTCAAATATTTATCTA+TGG - chr8_2:4046463-4046482 Msa1228600:intron 10.0%
!!! ATTTTAACAAATTTTCATTA+TGG - chr8_2:4046885-4046904 Msa1228600:intron 10.0%
!! GAATTAAAATATTGATCAAT+TGG + chr8_2:4046000-4046019 None:intergenic 15.0%
!! AAAGCAAATTTAAAAAATGT+TGG - chr8_2:4046048-4046067 Msa1228600:intron 15.0%
!! AAGCAAATTTAAAAAATGTT+GGG - chr8_2:4046049-4046068 Msa1228600:intron 15.0%
!! TAATTTATCCTACTAATATT+TGG + chr8_2:4046815-4046834 None:intergenic 15.0%
!! ATACATCAAATTAAATAACT+AGG + chr8_2:4048654-4048673 None:intergenic 15.0%
!!! ATATTTTCTCAAATTATATG+AGG - chr8_2:4049027-4049046 Msa1228600:intron 15.0%
!! CGATTTATGAAAAATATTTA+GGG + chr8_2:4049791-4049810 None:intergenic 15.0%
!! ACGATTTATGAAAAATATTT+AGG + chr8_2:4049792-4049811 None:intergenic 15.0%
!!! TTGTATAAATATTTTAAGGT+TGG + chr8_2:4050248-4050267 None:intergenic 15.0%
!!! TCACTTGTATAAATATTTTA+AGG + chr8_2:4050252-4050271 None:intergenic 15.0%
!! TTTAAAAGAAAAAACTATGT+AGG + chr8_2:4050537-4050556 None:intergenic 15.0%
!! TCATTATAATCATACATATT+TGG + chr8_2:4050718-4050737 None:intergenic 15.0%
!!! TTGCTATTTTCTCAAATTTT+CGG + chr8_2:4045745-4045764 None:intergenic 20.0%
!! CTTGATATTGTGAAAATTTA+TGG - chr8_2:4045873-4045892 Msa1228600:intron 20.0%
!! TGTGAAAATTTATGGATAAA+TGG - chr8_2:4045881-4045900 Msa1228600:intron 20.0%
!! GTAATTAAAAGGAGATTATT+TGG - chr8_2:4046321-4046340 Msa1228600:intron 20.0%
!! TCAAATATTTATCTATGGAA+AGG - chr8_2:4046468-4046487 Msa1228600:intron 20.0%
!! AGAAAAAATGTTGAAAATGT+AGG + chr8_2:4046507-4046526 None:intergenic 20.0%
!!! TAATAACAATATTTTGCTTG+CGG - chr8_2:4046574-4046593 Msa1228600:intron 20.0%
!!! TGAATTATTTGTTTCAGTTT+TGG - chr8_2:4046729-4046748 Msa1228600:intron 20.0%
!!! TGAAAATTTGTTAAAATCCA+TGG + chr8_2:4046882-4046901 None:intergenic 20.0%
!! TCAAATTCCTAAATATTTCA+AGG - chr8_2:4047106-4047125 Msa1228600:intron 20.0%
!! CAAATTCCTAAATATTTCAA+GGG - chr8_2:4047107-4047126 Msa1228600:intron 20.0%
!!! GAATATTCTTATTTACTATG+AGG - chr8_2:4047414-4047433 Msa1228600:intron 20.0%
!! TATGATATCTTCATTCTTTA+TGG + chr8_2:4047507-4047526 None:intergenic 20.0%
!!! TTCTTCTTTATTTTGTTTCA+AGG - chr8_2:4047557-4047576 Msa1228600:intron 20.0%
!!! AAATTTTTCTTGAGTCATAT+TGG - chr8_2:4047778-4047797 Msa1228600:intron 20.0%
!!! TTCATGATTTTTTATCTGTT+CGG - chr8_2:4047986-4048005 Msa1228600:intron 20.0%
!!! GTTCTTTCATTTGTTTTTTT+TGG - chr8_2:4048137-4048156 Msa1228600:intron 20.0%
!!! ATTCTGGAATTAGAAATATA+GGG + chr8_2:4048362-4048381 None:intergenic 20.0%
!! TAAATAGTAAAACTTGATGT+AGG - chr8_2:4048520-4048539 Msa1228600:intron 20.0%
!!! AAGATTAAATAAAAGTGTTG+GGG + chr8_2:4048723-4048742 None:intergenic 20.0%
!!! CAAGATTAAATAAAAGTGTT+GGG + chr8_2:4048724-4048743 None:intergenic 20.0%
!!! TCAAGATTAAATAAAAGTGT+TGG + chr8_2:4048725-4048744 None:intergenic 20.0%
!!! TTGTACTCTTTTTTGTTTAT+TGG - chr8_2:4048767-4048786 Msa1228600:CDS 20.0%
!! CAGATAATGATAAATATCTA+GGG + chr8_2:4048995-4049014 None:intergenic 20.0%
!! TCAGATAATGATAAATATCT+AGG + chr8_2:4048996-4049015 None:intergenic 20.0%
!! TCAAATTGTCAATAAGAAAA+AGG - chr8_2:4049631-4049650 Msa1228600:intron 20.0%
!! CAAATTGTCAATAAGAAAAA+GGG - chr8_2:4049632-4049651 Msa1228600:intron 20.0%
!! ATTCATTTGTGTAATGAATT+TGG - chr8_2:4049666-4049685 Msa1228600:intron 20.0%
!! ATAAAAAAAAACTAGCTATC+TGG + chr8_2:4049719-4049738 None:intergenic 20.0%
!!! ATATTTTTCATAAATCGTTC+AGG - chr8_2:4049794-4049813 Msa1228600:intron 20.0%
!! ATACCTTATCTAATATCTAT+TGG - chr8_2:4049950-4049969 Msa1228600:intron 20.0%
!!! ATGTGTAAATTTTACATAAG+AGG + chr8_2:4050159-4050178 None:intergenic 20.0%
! TTAGTAGTAGAAATTGAAGA+AGG + chr8_2:4045269-4045288 None:intergenic 25.0%
! AGAATGAATAATAAACGTAC+GGG + chr8_2:4045496-4045515 None:intergenic 25.0%
! GAGAATGAATAATAAACGTA+CGG + chr8_2:4045497-4045516 None:intergenic 25.0%
! TATTCATTAATTGACTGATG+TGG + chr8_2:4045678-4045697 None:intergenic 25.0%
!!! TAGTTGCTTTGCTATTATTA+TGG - chr8_2:4046152-4046171 Msa1228600:intron 25.0%
! TGTATTCCAAATTACTTGTT+TGG - chr8_2:4046224-4046243 Msa1228600:intron 25.0%
! AAAGATCCAAACAAGTAATT+TGG + chr8_2:4046233-4046252 None:intergenic 25.0%
!!! TAGAGAATCTATTTTTGTGT+AGG + chr8_2:4046258-4046277 None:intergenic 25.0%
! GGGACATAATAGTAATTAAA+AGG - chr8_2:4046310-4046329 Msa1228600:intron 25.0%
! TTTGGTTGAGAGATAATATT+TGG - chr8_2:4046339-4046358 Msa1228600:intron 25.0%
! TTATATGAAGAAATGTTGCT+GGG + chr8_2:4046665-4046684 None:intergenic 25.0%
! TTAAAATCCATGGTAAACAA+AGG + chr8_2:4046872-4046891 None:intergenic 25.0%
!! ATATTTTGCTAATCAGAAGT+AGG + chr8_2:4046936-4046955 None:intergenic 25.0%
!!! TTATTTTGTTTCAAGGTTGA+TGG - chr8_2:4047564-4047583 Msa1228600:intron 25.0%
! ATCTTCAAAGTCAAAATCAA+GGG + chr8_2:4047661-4047680 None:intergenic 25.0%
! TAATGCATAAGTTTCAAACA+TGG + chr8_2:4047751-4047770 None:intergenic 25.0%
!! ATTAAATTTCTTAGAAGTGC+AGG - chr8_2:4047852-4047871 Msa1228600:intron 25.0%
! AAAATCATGAAACCTTCTAA+TGG + chr8_2:4047977-4047996 None:intergenic 25.0%
! TAGTATGATTATATTCCCTT+GGG + chr8_2:4048286-4048305 None:intergenic 25.0%
! TTAGTATGATTATATTCCCT+TGG + chr8_2:4048287-4048306 None:intergenic 25.0%
!!! TTCTGGAATTAGAAATATAG+GGG + chr8_2:4048361-4048380 None:intergenic 25.0%
!!! CATTCTGGAATTAGAAATAT+AGG + chr8_2:4048363-4048382 None:intergenic 25.0%
!! TTATATTGTGCTATTGGTAA+TGG + chr8_2:4048397-4048416 None:intergenic 25.0%
!! TTTGGTTTATATTGTGCTAT+TGG + chr8_2:4048403-4048422 None:intergenic 25.0%
!! TCAAGTTTTACTATTTACTG+CGG + chr8_2:4048517-4048536 None:intergenic 25.0%
!! TTCTATTACTACTATTTTGC+AGG - chr8_2:4048679-4048698 Msa1228600:intron 25.0%
! ATAAATATATAGCTGTACCA+GGG + chr8_2:4049137-4049156 None:intergenic 25.0%
! TATAAATATATAGCTGTACC+AGG + chr8_2:4049138-4049157 None:intergenic 25.0%
! ATCATGTATCACAGATTATT+AGG + chr8_2:4049219-4049238 None:intergenic 25.0%
! TGTTAATATTAGATAACTGG+TGG + chr8_2:4049346-4049365 None:intergenic 25.0%
!! TGGTGTTAATATTAGATAAC+TGG + chr8_2:4049349-4049368 None:intergenic 25.0%
! TCAGTATATGTAACAACAAT+AGG - chr8_2:4049388-4049407 Msa1228600:intron 25.0%
! AATGAGAAATAGAGGAAATA+TGG + chr8_2:4049492-4049511 None:intergenic 25.0%
! CACAAAGAATTATCAAAATC+TGG - chr8_2:4049546-4049565 Msa1228600:intron 25.0%
! AGATAATATGCAATAAGGTA+AGG + chr8_2:4049581-4049600 None:intergenic 25.0%
! GATACAGATAATATGCAATA+AGG + chr8_2:4049586-4049605 None:intergenic 25.0%
!! ATTGGCAAATAAAAGCATAT+TGG + chr8_2:4049755-4049774 None:intergenic 25.0%
! TCACAGTTAGTAAGAAAATA+AGG + chr8_2:4049920-4049939 None:intergenic 25.0%
! AAGCCAATAGATATTAGATA+AGG + chr8_2:4049956-4049975 None:intergenic 25.0%
! TTATTTCAACCATAGCTAAA+AGG + chr8_2:4050116-4050135 None:intergenic 25.0%
!! AGCCAAATTTTCATTATAGT+GGG - chr8_2:4050276-4050295 Msa1228600:intron 25.0%
! AACCCACTATAATGAAAATT+TGG + chr8_2:4050281-4050300 None:intergenic 25.0%
!!! TTCATTATAGTGGGTTATTA+TGG - chr8_2:4050285-4050304 Msa1228600:intron 25.0%
!!! TCATTATAGTGGGTTATTAT+GGG - chr8_2:4050286-4050305 Msa1228600:intron 25.0%
! ACATTAATTAAACTGTGCAT+GGG + chr8_2:4050783-4050802 None:intergenic 25.0%
! TACATTAATTAAACTGTGCA+TGG + chr8_2:4050784-4050803 None:intergenic 25.0%
! TGATGAAGAAGCTTCTTTTT+CGG + chr8_2:4045336-4045355 None:intergenic 30.0%
TAAACAGATACACCTGATTT+AGG + chr8_2:4045380-4045399 None:intergenic 30.0%
GAGTGTATGTAGTTTATGTT+TGG - chr8_2:4045558-4045577 Msa1228600:intron 30.0%
!! ATAGAACTAGTCTTATCACT+AGG - chr8_2:4045842-4045861 Msa1228600:intron 30.0%
!! TAGAACTAGTCTTATCACTA+GGG - chr8_2:4045843-4045862 Msa1228600:intron 30.0%
CTGTCAAAATCTTTATGTTG+CGG - chr8_2:4045924-4045943 Msa1228600:CDS 30.0%
! TTGCTATTATTATGGATGCA+TGG - chr8_2:4046160-4046179 Msa1228600:intron 30.0%
CTAAAGTCACCAAATATCAA+CGG + chr8_2:4046281-4046300 None:intergenic 30.0%
CAAAATGTAGACAATCGAAA+GGG - chr8_2:4046389-4046408 Msa1228600:intron 30.0%
CTTATATGAAGAAATGTTGC+TGG + chr8_2:4046666-4046685 None:intergenic 30.0%
CAGCAACATTTCTTCATATA+AGG - chr8_2:4046664-4046683 Msa1228600:intron 30.0%
! TGTATACAGGTCTATGTTTT+TGG - chr8_2:4046760-4046779 Msa1228600:intron 30.0%
ACGAAGTTCCAAATATTAGT+AGG - chr8_2:4046804-4046823 Msa1228600:intron 30.0%
TTGTAGCTAAGCTAATATGA+TGG - chr8_2:4046984-4047003 Msa1228600:CDS 30.0%
TGTAGCTAAGCTAATATGAT+GGG - chr8_2:4046985-4047004 Msa1228600:CDS 30.0%
GAAGATCCCTTGAAATATTT+AGG + chr8_2:4047116-4047135 None:intergenic 30.0%
!! GAAGTATTTGTTGCTTTGAA+AGG + chr8_2:4047249-4047268 None:intergenic 30.0%
!!! TAGATTTGGGACTTTTTTGT+AGG - chr8_2:4047310-4047329 Msa1228600:intron 30.0%
! CCAATAGTGTGATCATTTTA+TGG + chr8_2:4047457-4047476 None:intergenic 30.0%
CCATAAAATGATCACACTAT+TGG - chr8_2:4047454-4047473 Msa1228600:intron 30.0%
AAGAAACTTCAGAATATGAC+AGG + chr8_2:4047542-4047561 None:intergenic 30.0%
CATCTTCAAAGTCAAAATCA+AGG + chr8_2:4047662-4047681 None:intergenic 30.0%
TTAATGAATATGTAGAGCGA+TGG + chr8_2:4047900-4047919 None:intergenic 30.0%
! TGGTTATATTGAGAAGTATG+TGG - chr8_2:4047938-4047957 Msa1228600:intron 30.0%
! ATATTGAGAAGTATGTGGTA+TGG - chr8_2:4047943-4047962 Msa1228600:intron 30.0%
CATTCTTATCTGTATTAGCT+TGG - chr8_2:4048039-4048058 Msa1228600:CDS 30.0%
!!! GACGTTTATTTTTTCTCCAT+TGG - chr8_2:4048082-4048101 Msa1228600:intron 30.0%
TGCACATTATTTATCACCAA+TGG + chr8_2:4048101-4048120 None:intergenic 30.0%
AATTTATACTGTCAAACCCA+AGG - chr8_2:4048267-4048286 Msa1228600:CDS 30.0%
ATTTATACTGTCAAACCCAA+GGG - chr8_2:4048268-4048287 Msa1228600:CDS 30.0%
! ACAGGGATTATTCTTTCTTT+TGG + chr8_2:4048421-4048440 None:intergenic 30.0%
TTCAGTATAATACAGCTGTA+GGG + chr8_2:4048444-4048463 None:intergenic 30.0%
GAGTAAATTGAGAAAGAAAG+CGG + chr8_2:4048913-4048932 None:intergenic 30.0%
CCACTGTAATTGACAATATA+AGG + chr8_2:4049096-4049115 None:intergenic 30.0%
CCTTATATTGTCAATTACAG+TGG - chr8_2:4049093-4049112 Msa1228600:intron 30.0%
GAGAAGTTGTGTTAAAAGAA+AGG - chr8_2:4049296-4049315 Msa1228600:intron 30.0%
ATTGTCAATAAGAAAAAGGG+AGG - chr8_2:4049635-4049654 Msa1228600:intron 30.0%
! TAGGGCATCATTCATATAAT+TGG + chr8_2:4049773-4049792 None:intergenic 30.0%
!! TAATATCTATTGGCTTGTCT+AGG - chr8_2:4049960-4049979 Msa1228600:intron 30.0%
GCACATTAGGGAATATAATT+GGG + chr8_2:4050218-4050237 None:intergenic 30.0%
TGCACATTAGGGAATATAAT+TGG + chr8_2:4050219-4050238 None:intergenic 30.0%
GTTGGTATTTATGCACATTA+GGG + chr8_2:4050230-4050249 None:intergenic 30.0%
! GAGCCAAATTTTCATTATAG+TGG - chr8_2:4050275-4050294 Msa1228600:intron 30.0%
ATGGGATCATAAATCATGTT+TGG - chr8_2:4050304-4050323 Msa1228600:intron 30.0%
!! GTTGGTAACAGATTTAAAAC+TGG + chr8_2:4050343-4050362 None:intergenic 30.0%
CATTAATTAAACTGTGCATG+GGG + chr8_2:4050782-4050801 None:intergenic 30.0%
! AAATTGGCTCAGCACAAATA+TGG + chr8_2:4045149-4045168 None:intergenic 35.0%
! CTCAATTTTGCTCTTCAAGA+TGG - chr8_2:4045446-4045465 Msa1228600:three_prime_UTR 35.0%
CAAGCTAATGCATGAATACA+AGG + chr8_2:4045974-4045993 None:intergenic 35.0%
CTTGTATTCATGCATTAGCT+TGG - chr8_2:4045972-4045991 Msa1228600:intron 35.0%
AATGTTGGGTCTTGATTCTA+TGG - chr8_2:4046063-4046082 Msa1228600:CDS 35.0%
! CTATTGACTATGTGAAAGCA+TGG - chr8_2:4046093-4046112 Msa1228600:CDS 35.0%
GATTCTCTACCGTTGATATT+TGG - chr8_2:4046269-4046288 Msa1228600:intron 35.0%
! TTGGTGACTTTAGTGTACTT+AGG - chr8_2:4046288-4046307 Msa1228600:intron 35.0%
TGGTGACTTTAGTGTACTTA+GGG - chr8_2:4046289-4046308 Msa1228600:intron 35.0%
! CCTTTCGATTGTCTACATTT+TGG + chr8_2:4046391-4046410 None:intergenic 35.0%
CCAAAATGTAGACAATCGAA+AGG - chr8_2:4046388-4046407 Msa1228600:intron 35.0%
CATGAATGTTGAGTTTAGGA+CGG + chr8_2:4046428-4046447 None:intergenic 35.0%
AGAGCATGAATGTTGAGTTT+AGG + chr8_2:4046432-4046451 None:intergenic 35.0%
GGAACAAAAAAGATCAGGAA+TGG + chr8_2:4046618-4046637 None:intergenic 35.0%
!!! TTCCTGATCTTTTTTGTTCC+TGG - chr8_2:4046618-4046637 Msa1228600:intron 35.0%
!!! TCCTGATCTTTTTTGTTCCT+GGG - chr8_2:4046619-4046638 Msa1228600:intron 35.0%
! TAAGGTACTATTCTTTGCTC+TGG - chr8_2:4046682-4046701 Msa1228600:intron 35.0%
TTTGGTCCTTCATTGTATAC+AGG - chr8_2:4046747-4046766 Msa1228600:intron 35.0%
CATAGACCTGTATACAATGA+AGG + chr8_2:4046756-4046775 None:intergenic 35.0%
! ATTGACAGTTGACGTTTTTG+AGG - chr8_2:4047048-4047067 Msa1228600:CDS 35.0%
! TTTTCTTACTATGCAAGCTC+TGG + chr8_2:4047210-4047229 None:intergenic 35.0%
!!! GAAGCTTTTCTGGTTTATCA+GGG + chr8_2:4047340-4047359 None:intergenic 35.0%
! GACTTTGAAGATGAGAATGA+AGG - chr8_2:4047669-4047688 Msa1228600:intron 35.0%
! TAGCTTGGTCTTTGATTCTT+TGG - chr8_2:4048054-4048073 Msa1228600:CDS 35.0%
! TTGGTCTTTGATTCTTTGGT+AGG - chr8_2:4048058-4048077 Msa1228600:intron 35.0%
AATCATACTAAGAACACCTG+AGG - chr8_2:4048296-4048315 Msa1228600:CDS 35.0%
CTTCAGTATAATACAGCTGT+AGG + chr8_2:4048445-4048464 None:intergenic 35.0%
!! TGACTTTTGATAGCCTTTGT+TGG - chr8_2:4048552-4048571 Msa1228600:intron 35.0%
AACTCACATTTCACCAACAA+AGG + chr8_2:4048568-4048587 None:intergenic 35.0%
AACACGTTAATTATGTGCAC+TGG - chr8_2:4048623-4048642 Msa1228600:intron 35.0%
!! AATAAAAGTGTTGGGGTTGA+TGG + chr8_2:4048716-4048735 None:intergenic 35.0%
ATCTTGAGCTAGATACACTA+CGG - chr8_2:4048738-4048757 Msa1228600:CDS 35.0%
AAGCGGTATTGCAAATCTTT+GGG + chr8_2:4048896-4048915 None:intergenic 35.0%
AAAGCGGTATTGCAAATCTT+TGG + chr8_2:4048897-4048916 None:intergenic 35.0%
TTACTCCAGTGTTCTACATT+CGG - chr8_2:4048927-4048946 Msa1228600:intron 35.0%
TCGGATCAGAGATTATTCAA+AGG - chr8_2:4048946-4048965 Msa1228600:intron 35.0%
AGGGACTATTCAATAGAGAA+GGG + chr8_2:4048976-4048995 None:intergenic 35.0%
TAGGGACTATTCAATAGAGA+AGG + chr8_2:4048977-4048996 None:intergenic 35.0%
TATTAACACCAGATCTTGCA+AGG - chr8_2:4049358-4049377 Msa1228600:intron 35.0%
AAAATCTTCCTTGCAAGATC+TGG + chr8_2:4049369-4049388 None:intergenic 35.0%
! TGCTTACATACTTCCCTTTT+TGG - chr8_2:4049431-4049450 Msa1228600:intron 35.0%
AATTACTCCCATGCCAAAAA+GGG + chr8_2:4049447-4049466 None:intergenic 35.0%
TAATTACTCCCATGCCAAAA+AGG + chr8_2:4049448-4049467 None:intergenic 35.0%
GAGTAATTAGTAAGGGAAAG+AGG - chr8_2:4049459-4049478 Msa1228600:intron 35.0%
TAGTAAGGGAAAGAGGAATA+TGG - chr8_2:4049466-4049485 Msa1228600:intron 35.0%
TGTGACTTACTTCAAGTCAA+AGG + chr8_2:4049530-4049549 None:intergenic 35.0%
TGTATCACCTGAAAAAAGCA+GGG - chr8_2:4049600-4049619 Msa1228600:intron 35.0%
TACACAAGCATAAGAACCAT+CGG + chr8_2:4049846-4049865 None:intergenic 35.0%
TCATGAACTTACTTCACCAA+GGG + chr8_2:4049891-4049910 None:intergenic 35.0%
TTCATGAACTTACTTCACCA+AGG + chr8_2:4049892-4049911 None:intergenic 35.0%
!! TCTCTAGAATTTCTACGAAG+AGG - chr8_2:4050033-4050052 Msa1228600:intron 35.0%
AATTTCTACGAAGAGGCTAT+AGG - chr8_2:4050040-4050059 Msa1228600:intron 35.0%
ATTTCTACGAAGAGGCTATA+GGG - chr8_2:4050041-4050060 Msa1228600:intron 35.0%
ATGCATAAAAGCAACGCAAA+CGG + chr8_2:4050085-4050104 None:intergenic 35.0%
GTAAAATTTACACATTCCCG+TGG - chr8_2:4050164-4050183 Msa1228600:intron 35.0%
! GGTTGGTATTTATGCACATT+AGG + chr8_2:4050231-4050250 None:intergenic 35.0%
! TTAAAACTGGACTAGAGACA+TGG + chr8_2:4050330-4050349 None:intergenic 35.0%
ACTGCAATATCACTAGATGT+TGG + chr8_2:4050361-4050380 None:intergenic 35.0%
!! ATTTGGAAGTATCATCTGCA+TGG - chr8_2:4050408-4050427 Msa1228600:intron 35.0%
! ACTTTTGCCAAAGAAATACG+AGG - chr8_2:4050572-4050591 Msa1228600:CDS 35.0%
TGTAACTTCTATGATGCCTT+AGG - chr8_2:4050658-4050677 Msa1228600:CDS 35.0%
ACAACACAACACAATGGCTA+TGG - chr8_2:4045178-4045197 Msa1228600:three_prime_UTR 40.0%
GATGTGAAGGAAGAAAAGTG+AGG + chr8_2:4045226-4045245 None:intergenic 40.0%
!! GATAGTGGAGAAAGATGTGA+AGG + chr8_2:4045239-4045258 None:intergenic 40.0%
GAAGAAGGTGAAGAAGATAG+TGG + chr8_2:4045254-4045273 None:intergenic 40.0%
TTAGGATCGAAACCACGATT+TGG + chr8_2:4045362-4045381 None:intergenic 40.0%
GCGAGAACTTCATAAGACTT+AGG + chr8_2:4045407-4045426 None:intergenic 40.0%
AGCACATACACATCTTGAAC+CGG - chr8_2:4045797-4045816 Msa1228600:intron 40.0%
ATGGATTCTTTGACTGCAGT+AGG - chr8_2:4046112-4046131 Msa1228600:CDS 40.0%
GGTGACTTTAGTGTACTTAG+GGG - chr8_2:4046290-4046309 Msa1228600:intron 40.0%
!!! CCTGATCTTTTTTGTTCCTG+GGG - chr8_2:4046620-4046639 Msa1228600:intron 40.0%
TGCCAACATTCAACTTGTCT+TGG - chr8_2:4047151-4047170 Msa1228600:intron 40.0%
! AGCCAAGACAAGTTGAATGT+TGG + chr8_2:4047156-4047175 None:intergenic 40.0%
GGCTGTTGTAAAAAAGCTAC+AGG - chr8_2:4047172-4047191 Msa1228600:intron 40.0%
TCCGAGATGTCACTAGATTT+GGG - chr8_2:4047297-4047316 Msa1228600:intron 40.0%
TCCCAAATCTAGTGACATCT+CGG + chr8_2:4047301-4047320 None:intergenic 40.0%
!!! CGAAGCTTTTCTGGTTTATC+AGG + chr8_2:4047341-4047360 None:intergenic 40.0%
!! AAGGTTGATGGCCTTACTAT+AGG - chr8_2:4047576-4047595 Msa1228600:intron 40.0%
CATCTAAGGAGCCTATAGTA+AGG + chr8_2:4047590-4047609 None:intergenic 40.0%
GATCTGAAAAATGAAGCCAC+AGG + chr8_2:4047627-4047646 None:intergenic 40.0%
! AGAATGAAGGTTAGCTCTTG+CGG - chr8_2:4047682-4047701 Msa1228600:intron 40.0%
ATGAATATGTAGAGCGATGG+AGG + chr8_2:4047897-4047916 None:intergenic 40.0%
AATAGCAGTACACGTGAACT+TGG - chr8_2:4047918-4047937 Msa1228600:intron 40.0%
ATGAAACCTTCTAATGGCAG+AGG + chr8_2:4047971-4047990 None:intergenic 40.0%
AGCTACCGGAAAATTGATAG+AGG - chr8_2:4048331-4048350 Msa1228600:CDS 40.0%
! GCACACCTCTATCAATTTTC+CGG + chr8_2:4048339-4048358 None:intergenic 40.0%
ATGGTGAGTGTTTGTCATTC+TGG + chr8_2:4048378-4048397 None:intergenic 40.0%
ATAATACAGCTGTAGGGACA+GGG + chr8_2:4048438-4048457 None:intergenic 40.0%
TATAATACAGCTGTAGGGAC+AGG + chr8_2:4048439-4048458 None:intergenic 40.0%
! GATCAAGTTGTGTGGTCAAT+TGG + chr8_2:4048481-4048500 None:intergenic 40.0%
TACTATTTACTGCGGTCACT+GGG + chr8_2:4048509-4048528 None:intergenic 40.0%
TTACTATTTACTGCGGTCAC+TGG + chr8_2:4048510-4048529 None:intergenic 40.0%
GTAAAACTTGATGTAGGCTC+TGG - chr8_2:4048526-4048545 Msa1228600:intron 40.0%
GTCTAAGTCCTTAACTACGT+CGG - chr8_2:4048803-4048822 Msa1228600:CDS 40.0%
ATAAGTGTCCGACGTAGTTA+AGG + chr8_2:4048814-4048833 None:intergenic 40.0%
!! TGAATTCGCAGTGCTGATTT+AGG - chr8_2:4048854-4048873 Msa1228600:intron 40.0%
GGTATTGCAAATCTTTGGGT+GGG + chr8_2:4048892-4048911 None:intergenic 40.0%
GGACTATTCAATAGAGAAGG+GGG + chr8_2:4048974-4048993 None:intergenic 40.0%
GGGACTATTCAATAGAGAAG+GGG + chr8_2:4048975-4048994 None:intergenic 40.0%
!! ACATACTTCCCTTTTTGGCA+TGG - chr8_2:4049436-4049455 Msa1228600:intron 40.0%
!! CATACTTCCCTTTTTGGCAT+GGG - chr8_2:4049437-4049456 Msa1228600:intron 40.0%
TGGCATGGGAGTAATTAGTA+AGG - chr8_2:4049451-4049470 Msa1228600:intron 40.0%
GGCATGGGAGTAATTAGTAA+GGG - chr8_2:4049452-4049471 Msa1228600:intron 40.0%
CCACGTCAAATGAGAAATAG+AGG + chr8_2:4049500-4049519 None:intergenic 40.0%
! CCTCTATTTCTCATTTGACG+TGG - chr8_2:4049497-4049516 Msa1228600:intron 40.0%
CTGTATCACCTGAAAAAAGC+AGG - chr8_2:4049599-4049618 Msa1228600:intron 40.0%
!!! ATCTATGCCCTGCTTTTTTC+AGG + chr8_2:4049610-4049629 None:intergenic 40.0%
!!! AGCTATCTGGTTTTAACTGC+TGG + chr8_2:4049706-4049725 None:intergenic 40.0%
CTTGGACTTCAAGAAGAAGA+GGG - chr8_2:4050006-4050025 Msa1228600:intron 40.0%
!! TGCTTGTGTCCTTTTAGCTA+TGG - chr8_2:4050104-4050123 Msa1228600:intron 40.0%
GTGGGAAGAAGATTCTGATT+TGG - chr8_2:4050391-4050410 Msa1228600:intron 40.0%
TGCTCATATGCAGAGAAAGA+AGG - chr8_2:4050506-4050525 Msa1228600:CDS 40.0%
GCTTTGTCCTCGTATTTCTT+TGG + chr8_2:4050582-4050601 None:intergenic 40.0%
TTGCAATTCAAGACAGCCTA+AGG + chr8_2:4050677-4050696 None:intergenic 40.0%
! GTGTTGTGTGGCACTGAAAT+TGG + chr8_2:4045165-4045184 None:intergenic 45.0%
TGCCACACAACACAACACAA+TGG - chr8_2:4045172-4045191 Msa1228600:three_prime_UTR 45.0%
AGCCATTGTGTTGTGTTGTG+TGG + chr8_2:4045177-4045196 None:intergenic 45.0%
GGAAGAAAAGTGAGGTTGTG+AGG + chr8_2:4045218-4045237 None:intergenic 45.0%
TCTTCATCAGAGCCAAATCG+TGG - chr8_2:4045347-4045366 Msa1228600:three_prime_UTR 45.0%
CGTGGTTTCGATCCTAAATC+AGG - chr8_2:4045365-4045384 Msa1228600:three_prime_UTR 45.0%
! TGTTGAGTTTAGGACGGAGA+GGG + chr8_2:4046422-4046441 None:intergenic 45.0%
! ATGTTGAGTTTAGGACGGAG+AGG + chr8_2:4046423-4046442 None:intergenic 45.0%
CCCCAGGAACAAAAAAGATC+AGG + chr8_2:4046623-4046642 None:intergenic 45.0%
GTTCCTGGGGTTATGTATTC+AGG - chr8_2:4046633-4046652 Msa1228600:intron 45.0%
GAAGAAATGTTGCTGGGCAA+GGG + chr8_2:4046659-4046678 None:intergenic 45.0%
TGAAGAAATGTTGCTGGGCA+AGG + chr8_2:4046660-4046679 None:intergenic 45.0%
! TCGCATGCCTTTGTTTACCA+TGG - chr8_2:4046862-4046881 Msa1228600:intron 45.0%
AAGTAGGCAGAGATGAACTG+AGG + chr8_2:4046920-4046939 None:intergenic 45.0%
CTCCGAGATGTCACTAGATT+TGG - chr8_2:4047296-4047315 Msa1228600:intron 45.0%
! AGCTGCTTTGAACAACTGAG+AGG + chr8_2:4047366-4047385 None:intergenic 45.0%
TCAGTTGTTCAAAGCAGCTC+TGG - chr8_2:4047367-4047386 Msa1228600:intron 45.0%
TCCTTAGATGATATCCCTGC+AGG - chr8_2:4047600-4047619 Msa1228600:intron 45.0%
TCCTGCAGGGATATCATCTA+AGG + chr8_2:4047604-4047623 None:intergenic 45.0%
! GAATGAAGGTTAGCTCTTGC+GGG - chr8_2:4047683-4047702 Msa1228600:intron 45.0%
! TTCTTAGAAGTGCAGGTCGT+TGG - chr8_2:4047859-4047878 Msa1228600:intron 45.0%
ACTCACTCTTAGCTCCTGAT+TGG - chr8_2:4048215-4048234 Msa1228600:intron 45.0%
CTCACTCTTAGCTCCTGATT+GGG - chr8_2:4048216-4048235 Msa1228600:intron 45.0%
TCACTCTTAGCTCCTGATTG+GGG - chr8_2:4048217-4048236 Msa1228600:intron 45.0%
!! TTAGCTTGTACACCCCAATC+AGG + chr8_2:4048232-4048251 None:intergenic 45.0%
AACACCTGAGGAGCAAAAGA+GGG - chr8_2:4048308-4048327 Msa1228600:CDS 45.0%
!! AGTGCTGATTTAGGCCTTCT+AGG - chr8_2:4048863-4048882 Msa1228600:intron 45.0%
CGGTATTGCAAATCTTTGGG+TGG + chr8_2:4048893-4048912 None:intergenic 45.0%
CTGATCCGAATGTAGAACAC+TGG + chr8_2:4048935-4048954 None:intergenic 45.0%
ATATAGCTGTACCAGGGTAC+TGG + chr8_2:4049131-4049150 None:intergenic 45.0%
TCATAAATCGTTCAGGTCCC+TGG - chr8_2:4049801-4049820 Msa1228600:intron 45.0%
GTGATGCTTAAGCAAACCGA+TGG - chr8_2:4049827-4049846 Msa1228600:intron 45.0%
AGGCCAAAGAAGAACTGTTG+AGG - chr8_2:4049980-4049999 Msa1228600:intron 45.0%
GGCCAAAGAAGAACTGTTGA+GGG - chr8_2:4049981-4050000 Msa1228600:intron 45.0%
GACCCTCAACAGTTCTTCTT+TGG + chr8_2:4049986-4050005 None:intergenic 45.0%
CCTCTTCTTCTTGAAGTCCA+AGG + chr8_2:4050008-4050027 None:intergenic 45.0%
CCTTGGACTTCAAGAAGAAG+AGG - chr8_2:4050005-4050024 Msa1228600:intron 45.0%
AAAGATGCAGTGCAGAACCA+CGG + chr8_2:4050184-4050203 None:intergenic 45.0%
TGATATTGCAGTCAAGCACG+TGG - chr8_2:4050369-4050388 Msa1228600:intron 45.0%
!! TGGAAGTATCATCTGCATGG+CGG - chr8_2:4050411-4050430 Msa1228600:intron 45.0%
CCTCTAGCAATGTTCTACTC+AGG + chr8_2:4050438-4050457 None:intergenic 45.0%
CCTGAGTAGAACATTGCTAG+AGG - chr8_2:4050435-4050454 Msa1228600:intron 45.0%
GAGTAGAACATTGCTAGAGG+AGG - chr8_2:4050438-4050457 Msa1228600:intron 45.0%
!! GCACATAGCACTGACACTTC+CGG + chr8_2:4045819-4045838 None:intergenic 50.0%
TGTTGCGGTTGTTGAGTGTG+TGG - chr8_2:4045939-4045958 Msa1228600:CDS 50.0%
! TGCTTGCGGCTTTTATGTGC+TGG - chr8_2:4046588-4046607 Msa1228600:intron 50.0%
! GCTTGCGGCTTTTATGTGCT+GGG - chr8_2:4046589-4046608 Msa1228600:intron 50.0%
! TGAGAGGCTCGAAGCTTTTC+TGG + chr8_2:4047350-4047369 None:intergenic 50.0%
! GGTTAGCTCTTGCGGGAAAA+TGG - chr8_2:4047690-4047709 Msa1228600:intron 50.0%
ATGGTGCCTCTGCCATTAGA+AGG - chr8_2:4047962-4047981 Msa1228600:intron 50.0%
GAACACCTGAGGAGCAAAAG+AGG - chr8_2:4048307-4048326 Msa1228600:CDS 50.0%
! GGGATAGGGATCAAGTTGTG+TGG + chr8_2:4048489-4048508 None:intergenic 50.0%
TTACTGCGGTCACTGGGATA+GGG + chr8_2:4048503-4048522 None:intergenic 50.0%
TTTACTGCGGTCACTGGGAT+AGG + chr8_2:4048504-4048523 None:intergenic 50.0%
TGCTTAAGCATCACCTGCCA+GGG + chr8_2:4049821-4049840 None:intergenic 50.0%
TTGCTTAAGCATCACCTGCC+AGG + chr8_2:4049822-4049841 None:intergenic 50.0%
GAAGAACTGTTGAGGGTCCT+TGG - chr8_2:4049988-4050007 Msa1228600:intron 50.0%
AAGATGCAGTGCAGAACCAC+GGG + chr8_2:4050183-4050202 None:intergenic 50.0%
TATTGCAGTCAAGCACGTGG+TGG - chr8_2:4050372-4050391 Msa1228600:intron 50.0%
ATTGCAGTCAAGCACGTGGT+GGG - chr8_2:4050373-4050392 Msa1228600:intron 50.0%
GGGCCTGAATACATAACCCC+AGG + chr8_2:4046639-4046658 None:intergenic 55.0%
TGATATCCCTGCAGGACCTG+TGG - chr8_2:4047608-4047627 Msa1228600:intron 55.0%
ATGAAGCCACAGGTCCTGCA+GGG + chr8_2:4047617-4047636 None:intergenic 55.0%
AATGAAGCCACAGGTCCTGC+AGG + chr8_2:4047618-4047637 None:intergenic 55.0%
! AGCTCCCTCTTTTGCTCCTC+AGG + chr8_2:4048315-4048334 None:intergenic 55.0%
GGAGCAAAAGAGGGAGCTAC+CGG - chr8_2:4048317-4048336 Msa1228600:CDS 55.0%
CTTTGGGTGGGAAGCCTAGA+AGG + chr8_2:4048880-4048899 None:intergenic 55.0%
AAATCGTTCAGGTCCCTGGC+AGG - chr8_2:4049805-4049824 Msa1228600:intron 55.0%
AGTGCAACTCGCTTCACCCT+TGG - chr8_2:4049872-4049891 Msa1228600:intron 55.0%
GCTGTGTTTCGCCAGTACCC+TGG - chr8_2:4049117-4049136 Msa1228600:intron 60.0%
GTCCATCCACACGCACGCAA+TGG - chr8_2:4050475-4050494 Msa1228600:CDS 60.0%
GACCATTGCGTGCGTGTGGA+TGG + chr8_2:4050480-4050499 None:intergenic 60.0%
CGATGACCATTGCGTGCGTG+TGG + chr8_2:4050484-4050503 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 4045136 4050814 4045136 ID=Msa1228600;Name=Msa1228600
chr8_2 mRNA 4045136 4050814 4045136 ID=Msa1228600-mRNA-1;Parent=Msa1228600;Name=Msa1228600-mRNA-1;_AED=0.29;_eAED=0.29;_QI=55|1|1|1|0.91|0.84|13|354|378
chr8_2 exon 4045136 4045270 4045136 ID=Msa1228600-mRNA-1:exon:1345;Parent=Msa1228600-mRNA-1
chr8_2 exon 4045292 4045570 4045292 ID=Msa1228600-mRNA-1:exon:1344;Parent=Msa1228600-mRNA-1
chr8_2 exon 4045888 4045968 4045888 ID=Msa1228600-mRNA-1:exon:1343;Parent=Msa1228600-mRNA-1
chr8_2 exon 4046052 4046134 4046052 ID=Msa1228600-mRNA-1:exon:1342;Parent=Msa1228600-mRNA-1
chr8_2 exon 4046812 4046872 4046812 ID=Msa1228600-mRNA-1:exon:1341;Parent=Msa1228600-mRNA-1
chr8_2 exon 4046983 4047085 4046983 ID=Msa1228600-mRNA-1:exon:1340;Parent=Msa1228600-mRNA-1
chr8_2 exon 4047191 4047249 4047191 ID=Msa1228600-mRNA-1:exon:1339;Parent=Msa1228600-mRNA-1
chr8_2 exon 4047991 4048076 4047991 ID=Msa1228600-mRNA-1:exon:1338;Parent=Msa1228600-mRNA-1
chr8_2 exon 4048260 4048371 4048260 ID=Msa1228600-mRNA-1:exon:1337;Parent=Msa1228600-mRNA-1
chr8_2 exon 4048556 4048618 4048556 ID=Msa1228600-mRNA-1:exon:1336;Parent=Msa1228600-mRNA-1
chr8_2 exon 4048730 4048822 4048730 ID=Msa1228600-mRNA-1:exon:1335;Parent=Msa1228600-mRNA-1
chr8_2 exon 4049265 4049295 4049265 ID=Msa1228600-mRNA-1:exon:1334;Parent=Msa1228600-mRNA-1
chr8_2 exon 4050455 4050814 4050455 ID=Msa1228600-mRNA-1:exon:1333;Parent=Msa1228600-mRNA-1
chr8_2 five_prime_UTR 4050760 4050814 4050760 ID=Msa1228600-mRNA-1:five_prime_utr;Parent=Msa1228600-mRNA-1
chr8_2 CDS 4050455 4050759 4050455 ID=Msa1228600-mRNA-1:cds;Parent=Msa1228600-mRNA-1
chr8_2 CDS 4049265 4049295 4049265 ID=Msa1228600-mRNA-1:cds;Parent=Msa1228600-mRNA-1
chr8_2 CDS 4048730 4048822 4048730 ID=Msa1228600-mRNA-1:cds;Parent=Msa1228600-mRNA-1
chr8_2 CDS 4048556 4048618 4048556 ID=Msa1228600-mRNA-1:cds;Parent=Msa1228600-mRNA-1
chr8_2 CDS 4048260 4048371 4048260 ID=Msa1228600-mRNA-1:cds;Parent=Msa1228600-mRNA-1
chr8_2 CDS 4047991 4048076 4047991 ID=Msa1228600-mRNA-1:cds;Parent=Msa1228600-mRNA-1
chr8_2 CDS 4047191 4047249 4047191 ID=Msa1228600-mRNA-1:cds;Parent=Msa1228600-mRNA-1
chr8_2 CDS 4046983 4047085 4046983 ID=Msa1228600-mRNA-1:cds;Parent=Msa1228600-mRNA-1
chr8_2 CDS 4046812 4046872 4046812 ID=Msa1228600-mRNA-1:cds;Parent=Msa1228600-mRNA-1
chr8_2 CDS 4046052 4046134 4046052 ID=Msa1228600-mRNA-1:cds;Parent=Msa1228600-mRNA-1
chr8_2 CDS 4045888 4045968 4045888 ID=Msa1228600-mRNA-1:cds;Parent=Msa1228600-mRNA-1
chr8_2 CDS 4045511 4045570 4045511 ID=Msa1228600-mRNA-1:cds;Parent=Msa1228600-mRNA-1
chr8_2 three_prime_UTR 4045292 4045510 4045292 ID=Msa1228600-mRNA-1:three_prime_utr;Parent=Msa1228600-mRNA-1
chr8_2 three_prime_UTR 4045136 4045270 4045136 ID=Msa1228600-mRNA-1:three_prime_utr;Parent=Msa1228600-mRNA-1
Gene Sequence

>Msa1228600

ATGGCTATGGCTATGTCATCTCTGCCTCACAACCTCACTTTTCTTCCTTCACATCTTTCTCCACTATCTTCTTCACCTTCTTCAATTTCTACTACTAAATCTCTTCGAAACACTTCTTTATTCAAAATCAAATGCATTAAAACCGAAAAAGAAGCTTCTTCATCAGAGCCAAATCGTGGTTTCGATCCTAAATCAGGTGTATCTGTTTACAAACCTAAGTCTTATGAAGTTCTCGCTACTGATGCTGCTAATTCACTCAATTTTGCTCTTCAAGATGGAAAACTGAGACTCGAAATCGATTTCCCGCCCTTGCCCAGCAACATTTCTTCATATAAGGGATCTTCAGATGATTTCATCGATGCCAACATTCAACTTGTCTTGGCTGTTGTAAAAAAGCTACAGGAGAAAAAAGAGACCAGAGCTTGCATAGTATTCCCTGATAAACCAGAAAAGCTTCGAGCCTCTCAGTTGTTCAAAGCAGCTCTGGATTCAGTTGATGGCCTTACTATAGGCTCCTTAGATGATATCCCTGCAGGACCTGTGGCTTCATTTTTCAGATCTGTTAGAAACACCCTTGATTTTGACTTTGAAGATGAGAATGAAGGTCGTTGGCAGTCAAGTGAACCTCCATCGCTCTACATATTCATTAATAGCAGTACACGTGAACTTGGTTATATTGAGAAGTATGTGGAAAAATTTGCTCCATCAACCCCAACACTTTTATTTAATCTTGAGCTAGATACACTACGTGCTGATTTAGGCCTTCTAGGCTTCCCACCCAAAGATTTGCAATACCGCTTTCTTTCTCAATTTACTCCAGTGTTCTACATTCGGATCAGAGATTATTCAAAGACAGTTGCAGTAGCACCTTATATTGTCAATTACAGTGGAGCTGTGTTTCGCCAGTACCCTGGTCCCTGGCAGGTGATGCTTAAGCAAACCGATGGTTCTTATGCTTGTGTAGCAGAAAGTGCAACTCGCTTCACCCTTGGTGAAGCCAAAGAAGAACTGTTGAGGGTCCTTGGACTTCAAGAAGAAGAGGGAAGCTCTCTAGAATTTCTACGAAGAGGCTATAGGTCAAGCACGTGGTGGGAAGAAGATTCTGATTTGGAAGTATCATCTGCATGGCGGACCTGA

Protein sequence

>Msa1228600

MAMAMSSLPHNLTFLPSHLSPLSSSPSSISTTKSLRNTSLFKIKCIKTEKEASSSEPNRGFDPKSGVSVYKPKSYEVLATDAANSLNFALQDGKLRLEIDFPPLPSNISSYKGSSDDFIDANIQLVLAVVKKLQEKKETRACIVFPDKPEKLRASQLFKAALDSVDGLTIGSLDDIPAGPVASFFRSVRNTLDFDFEDENEGRWQSSEPPSLYIFINSSTRELGYIEKYVEKFAPSTPTLLFNLELDTLRADLGLLGFPPKDLQYRFLSQFTPVFYIRIRDYSKTVAVAPYIVNYSGAVFRQYPGPWQVMLKQTDGSYACVAESATRFTLGEAKEELLRVLGLQEEEGSSLEFLRRGYRSSTWWEEDSDLEVSSAWRT*