AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0074860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074860 MtrunA17_Chr7g0262621 66.216 148 35 5 1 144 1 137 1.70e-58 178
Msa0074860 MtrunA17_Chr1g0182931 92.029 138 8 1 11 145 11 148 1.36e-54 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074860 AT2G20260.1 61.644 146 47 3 5 144 2 144 3.49e-44 142
Msa0074860 AT4G28750.1 58.621 145 50 3 5 144 2 141 1.20e-34 118

Find 84 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGTAAACTTTAAGATTA+TGG 0.127183 1_2:-49815116 None:intergenic
CATTGGCGTAGTTCACTTTC+TGG 0.135317 1_2:-49814897 None:intergenic
GTTAGTTTGGTTGTTTATTT+TGG 0.151055 1_2:-49813758 None:intergenic
CCAATATTGTTGGACTTTAA+AGG 0.153877 1_2:-49813984 None:intergenic
ATGTTAATGCCGTACATTTA+AGG 0.220555 1_2:+49815197 Msa0074860:three_prime_UTR
ACATGCCTAATTAGGCATTT+AGG 0.233081 1_2:-49815178 None:intergenic
ATTGGTGGTGGCTTGGGTTT+AGG 0.254441 1_2:-49814104 None:intergenic
GGGGCCAATTGGTGGTGGCT+TGG 0.265521 1_2:-49814111 None:intergenic
ATACTCCTAAATGCCTAATT+AGG 0.269615 1_2:+49815173 Msa0074860:three_prime_UTR
CGGCATTAACATGCCTAATT+AGG 0.272134 1_2:-49815186 None:intergenic
GGGCCAATTGGTGGTGGCTT+GGG 0.275299 1_2:-49814110 None:intergenic
CAAGTAAACTTTAAGATTAT+GGG 0.291812 1_2:-49815115 None:intergenic
AGAAATGTTGTGACATGTTT+TGG 0.296970 1_2:+49815388 Msa0074860:three_prime_UTR
CAATATTGTTGGACTTTAAA+GGG 0.305571 1_2:-49813983 None:intergenic
GTGGAGGCAGCAGGTGCAGC+CGG 0.318522 1_2:-49814053 None:intergenic
CCTTTAAAGTCCAACAATAT+TGG 0.324065 1_2:+49813984 Msa0074860:CDS
GTGAGTGAAGTGTGTTAGTT+TGG 0.328090 1_2:-49813771 None:intergenic
CTTCTTCTAGACTTGTTGTC+AGG 0.342347 1_2:+49814012 Msa0074860:CDS
TCAACTTGATCTCTTTATCT+TGG 0.357439 1_2:+49815293 Msa0074860:three_prime_UTR
GTCAATTTCAGTTGTTGCAT+TGG 0.379617 1_2:-49815220 None:intergenic
TTATCCAATGGATTGGGATA+TGG 0.380731 1_2:+49813664 Msa0074860:five_prime_UTR
CTCAACAGGTGAAGATTCTT+AGG 0.381804 1_2:+49814684 Msa0074860:intron
TATATATAGAACTAAGATAA+AGG 0.386193 1_2:-49815327 None:intergenic
TGTCAATCGTTTCCTCCACT+TGG 0.388848 1_2:-49813704 None:intergenic
GAACCTCTCTTGGGGCCAAT+TGG 0.393160 1_2:-49814122 None:intergenic
CTCTTGGGGCCAATTGGTGG+TGG 0.405813 1_2:-49814116 None:intergenic
TGGCCCCAAGAGAGGTTCTA+AGG 0.412793 1_2:+49814127 Msa0074860:CDS
ACGACAGGGTAGCGAGTCTT+GGG 0.413817 1_2:-49814865 None:intergenic
GATAATCTTAATGTGGCAAA+AGG 0.414539 1_2:-49813826 None:intergenic
AATTACCTTAGAACCTCTCT+TGG 0.417720 1_2:-49814132 None:intergenic
AGAAGAAGAACCAATATTGT+TGG 0.421736 1_2:-49813994 None:intergenic
ATCGACAAATAACTATGCTT+TGG 0.426234 1_2:+49814921 Msa0074860:CDS
CCTTGATGAAGTTGTGTTGT+TGG 0.428946 1_2:-49813943 None:intergenic
GGTGGCTTGGGTTTAGGAGT+AGG 0.430314 1_2:-49814098 None:intergenic
CTTCTTATTGTATTCAAATG+AGG 0.430615 1_2:+49815138 Msa0074860:three_prime_UTR
CCTCTCTTGGGGCCAATTGG+TGG 0.430678 1_2:-49814119 None:intergenic
CATCTCATCCTCAGAAACTT+TGG 0.431422 1_2:-49813727 None:intergenic
GACAACATTATCCAATGGAT+TGG 0.434459 1_2:+49813657 Msa0074860:five_prime_UTR
GCTGGAGCAGTGGAGGCAGC+AGG 0.442829 1_2:-49814062 None:intergenic
TTCTGGAATCGAACCACGAC+AGG 0.446735 1_2:-49814880 None:intergenic
ATTACCTTAGAACCTCTCTT+GGG 0.450802 1_2:-49814131 None:intergenic
CACGACAGGGTAGCGAGTCT+TGG 0.452960 1_2:-49814866 None:intergenic
GTTCTATATATATTCTTAGC+TGG 0.454966 1_2:+49815338 Msa0074860:three_prime_UTR
GCTGCCTCCACTGCTCCAGC+TGG 0.461366 1_2:+49814065 Msa0074860:CDS
AAACCCAAGCCACCACCAAT+TGG 0.463084 1_2:+49814107 Msa0074860:CDS
TTGCATTGGCCTTAAATGTA+CGG 0.485680 1_2:-49815206 None:intergenic
TGCAGCCGGGGCACCCTCAT+CGG 0.488096 1_2:-49814039 None:intergenic
TTCTTCTAGACTTGTTGTCA+GGG 0.490708 1_2:+49814013 Msa0074860:CDS
GTAGGAGCAGCATCACCAGC+TGG 0.494338 1_2:-49814080 None:intergenic
TGGAGGCAGCAGGTGCAGCC+GGG 0.495138 1_2:-49814052 None:intergenic
ACAACATTATCCAATGGATT+GGG 0.497348 1_2:+49813658 Msa0074860:five_prime_UTR
GATTAGATTGAGGTATGAGA+GGG 0.497810 1_2:-49813799 None:intergenic
AGCATGGCATCAGCAGCTAC+TGG 0.498675 1_2:+49813894 Msa0074860:CDS
ATCACCAGCTGGAGCAGTGG+AGG 0.508802 1_2:-49814069 None:intergenic
GGCAACCGATGAGGGTGCCC+CGG 0.512401 1_2:+49814034 Msa0074860:CDS
AGCATCACCAGCTGGAGCAG+TGG 0.519718 1_2:-49814072 None:intergenic
TCCTACTGGTACAAAGGCAC+TGG 0.520039 1_2:+49814713 Msa0074860:CDS
ATAGTTATTTGTCGATACAT+TGG 0.524557 1_2:-49814914 None:intergenic
AGATTAGATTGAGGTATGAG+AGG 0.540515 1_2:-49813800 None:intergenic
TGCACCATATCCCAATCCAT+TGG 0.540763 1_2:-49813668 None:intergenic
TTCTTAGGAAGGAATCCTAC+TGG 0.542855 1_2:+49814699 Msa0074860:CDS
GTCAATCGTTTCCTCCACTT+GGG 0.546716 1_2:-49813703 None:intergenic
GGAGGCAGCAGGTGCAGCCG+GGG 0.558579 1_2:-49814051 None:intergenic
ACAGGTGAAGATTCTTAGGA+AGG 0.576965 1_2:+49814688 Msa0074860:intron
AAGGAATCCTACTGGTACAA+AGG 0.577304 1_2:+49814707 Msa0074860:CDS
CCACCAATTGGCCCCAAGAG+AGG 0.582857 1_2:+49814119 Msa0074860:CDS
GATTGACACCAAAGTTTCTG+AGG 0.592055 1_2:+49813719 Msa0074860:five_prime_UTR
TGTTGTCAGGGCAACCGATG+AGG 0.592544 1_2:+49814025 Msa0074860:CDS
CTTAGCTGGAGTTCGAGAGG+AGG 0.610521 1_2:+49815352 Msa0074860:three_prime_UTR
CAAGACTCGCTACCCTGTCG+TGG 0.613483 1_2:+49814867 Msa0074860:CDS
GTTGTCAGGGCAACCGATGA+GGG 0.613757 1_2:+49814026 Msa0074860:CDS
CCAACAACACAACTTCATCA+AGG 0.613961 1_2:+49813943 Msa0074860:CDS
AAAAGGACAAGATTAGATTG+AGG 0.617552 1_2:-49813809 None:intergenic
ATTCTTAGCTGGAGTTCGAG+AGG 0.622524 1_2:+49815349 Msa0074860:three_prime_UTR
AGTCATGGCTAGCAGCAGCA+TGG 0.629935 1_2:+49813878 Msa0074860:exon
GTAGTGACAACATTATCCAA+TGG 0.631259 1_2:+49813652 Msa0074860:five_prime_UTR
CTTTAAAGGGAACATCAACA+TGG 0.644075 1_2:-49813970 None:intergenic
TTACCTTAGAACCTCTCTTG+GGG 0.647944 1_2:-49814130 None:intergenic
CACAAGTGTCATCACCCAAG+TGG 0.648059 1_2:+49813689 Msa0074860:five_prime_UTR
CACAGAAAGAAAGATAGTCA+TGG 0.651778 1_2:+49813863 Msa0074860:exon
AAGTGTCATCACCCAAGTGG+AGG 0.652030 1_2:+49813692 Msa0074860:five_prime_UTR
TCCAGTGCCTTTGTACCAGT+AGG 0.656987 1_2:-49814714 None:intergenic
CGACAGGGTAGCGAGTCTTG+GGG 0.696532 1_2:-49814864 None:intergenic
TCTGGAATCGAACCACGACA+GGG 0.707301 1_2:-49814879 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATAGAACTAAGATAA+AGG - chr1_2:49815330-49815349 None:intergenic 15.0%
!! TATATATAGAACTAAGATAA+AGG - chr1_2:49815330-49815349 None:intergenic 15.0%
!!! GTTTAGTTTGAATTTACTTA+TGG + chr1_2:49814243-49814262 Msa0074860:intron 20.0%
!! TTATGAGGAAAAAAACTTAA+GGG - chr1_2:49814793-49814812 None:intergenic 20.0%
!! ATTATGAGGAAAAAAACTTA+AGG - chr1_2:49814794-49814813 None:intergenic 20.0%
!!! CAAGTAAACTTTAAGATTAT+GGG - chr1_2:49815118-49815137 None:intergenic 20.0%
!!! AAGTTTTCAGTATCATTTTT+AGG - chr1_2:49815245-49815264 None:intergenic 20.0%
!!! GTTTAGTTTGAATTTACTTA+TGG + chr1_2:49814243-49814262 Msa0074860:intron 20.0%
!! TTATGAGGAAAAAAACTTAA+GGG - chr1_2:49814793-49814812 None:intergenic 20.0%
!! ATTATGAGGAAAAAAACTTA+AGG - chr1_2:49814794-49814813 None:intergenic 20.0%
!!! CAAGTAAACTTTAAGATTAT+GGG - chr1_2:49815118-49815137 None:intergenic 20.0%
!!! AAGTTTTCAGTATCATTTTT+AGG - chr1_2:49815245-49815264 None:intergenic 20.0%
!!! GTTAGTTTGGTTGTTTATTT+TGG - chr1_2:49813761-49813780 None:intergenic 25.0%
!!! CTCTTTTGATAATCTTAATG+TGG - chr1_2:49813836-49813855 None:intergenic 25.0%
! CAATATTGTTGGACTTTAAA+GGG - chr1_2:49813986-49814005 None:intergenic 25.0%
! TTCTTGTTGCAATTATACAT+TGG + chr1_2:49814221-49814240 Msa0074860:intron 25.0%
! TGATACTACTTATAACTTTG+TGG + chr1_2:49814317-49814336 Msa0074860:intron 25.0%
!!! AAGCTATATTAGAGTGTTTT+TGG + chr1_2:49814359-49814378 Msa0074860:intron 25.0%
!!! AAGTGAGTTTTAGTTGAAAT+AGG - chr1_2:49814403-49814422 None:intergenic 25.0%
! TATTTCAACTAAAACTCACT+TGG + chr1_2:49814402-49814421 Msa0074860:intron 25.0%
! ATTTCAACTAAAACTCACTT+GGG + chr1_2:49814403-49814422 Msa0074860:intron 25.0%
! TAGCTAAAGATAGTTGAAAT+AGG - chr1_2:49814543-49814562 None:intergenic 25.0%
!!! TTTTTTTCCTCATAATCCTT+TGG + chr1_2:49814798-49814817 Msa0074860:intron 25.0%
! ATAGTTATTTGTCGATACAT+TGG - chr1_2:49814917-49814936 None:intergenic 25.0%
!! TTTTGACATGAAAAAACGTT+AGG - chr1_2:49815023-49815042 None:intergenic 25.0%
!!! GCAAGTAAACTTTAAGATTA+TGG - chr1_2:49815119-49815138 None:intergenic 25.0%
! CTTCTTATTGTATTCAAATG+AGG + chr1_2:49815138-49815157 Msa0074860:three_prime_UTR 25.0%
! TTGAAAAATGTTGTAGTCTT+GGG - chr1_2:49815270-49815289 None:intergenic 25.0%
! GTTCTATATATATTCTTAGC+TGG + chr1_2:49815338-49815357 Msa0074860:three_prime_UTR 25.0%
!!! GTTAGTTTGGTTGTTTATTT+TGG - chr1_2:49813761-49813780 None:intergenic 25.0%
!!! CTCTTTTGATAATCTTAATG+TGG - chr1_2:49813836-49813855 None:intergenic 25.0%
! CAATATTGTTGGACTTTAAA+GGG - chr1_2:49813986-49814005 None:intergenic 25.0%
! TTCTTGTTGCAATTATACAT+TGG + chr1_2:49814221-49814240 Msa0074860:intron 25.0%
! TGATACTACTTATAACTTTG+TGG + chr1_2:49814317-49814336 Msa0074860:intron 25.0%
!!! AAGCTATATTAGAGTGTTTT+TGG + chr1_2:49814359-49814378 Msa0074860:intron 25.0%
!!! AAGTGAGTTTTAGTTGAAAT+AGG - chr1_2:49814403-49814422 None:intergenic 25.0%
! TATTTCAACTAAAACTCACT+TGG + chr1_2:49814402-49814421 Msa0074860:intron 25.0%
! ATTTCAACTAAAACTCACTT+GGG + chr1_2:49814403-49814422 Msa0074860:intron 25.0%
! TAGCTAAAGATAGTTGAAAT+AGG - chr1_2:49814543-49814562 None:intergenic 25.0%
!!! TTTTTTTCCTCATAATCCTT+TGG + chr1_2:49814798-49814817 Msa0074860:intron 25.0%
! ATAGTTATTTGTCGATACAT+TGG - chr1_2:49814917-49814936 None:intergenic 25.0%
!! TTTTGACATGAAAAAACGTT+AGG - chr1_2:49815023-49815042 None:intergenic 25.0%
!!! GCAAGTAAACTTTAAGATTA+TGG - chr1_2:49815119-49815138 None:intergenic 25.0%
! CTTCTTATTGTATTCAAATG+AGG + chr1_2:49815138-49815157 Msa0074860:three_prime_UTR 25.0%
! TTGAAAAATGTTGTAGTCTT+GGG - chr1_2:49815270-49815289 None:intergenic 25.0%
! GTTCTATATATATTCTTAGC+TGG + chr1_2:49815338-49815357 Msa0074860:three_prime_UTR 25.0%
! ACAACATTATCCAATGGATT+GGG + chr1_2:49813658-49813677 Msa0074860:five_prime_UTR 30.0%
!!! AGTTTGGTTGTTTATTTTGG+AGG - chr1_2:49813758-49813777 None:intergenic 30.0%
AAAAGGACAAGATTAGATTG+AGG - chr1_2:49813812-49813831 None:intergenic 30.0%
GATAATCTTAATGTGGCAAA+AGG - chr1_2:49813829-49813848 None:intergenic 30.0%
CCAATATTGTTGGACTTTAA+AGG - chr1_2:49813987-49814006 None:intergenic 30.0%
!! CCTTTAAAGTCCAACAATAT+TGG + chr1_2:49813984-49814003 Msa0074860:CDS 30.0%
AGAAGAAGAACCAATATTGT+TGG - chr1_2:49813997-49814016 None:intergenic 30.0%
TTAAACTAGTCCACCTAAAT+TGG - chr1_2:49814503-49814522 None:intergenic 30.0%
TAGTCTCATAAGTTCATAAG+CGG + chr1_2:49814586-49814605 Msa0074860:intron 30.0%
! TTGGTTGAAATTTGAGTTTG+AGG - chr1_2:49814769-49814788 None:intergenic 30.0%
AGGAAAAAAACTTAAGGGTT+TGG - chr1_2:49814788-49814807 None:intergenic 30.0%
ATCGACAAATAACTATGCTT+TGG + chr1_2:49814921-49814940 Msa0074860:CDS 30.0%
ATACTCCTAAATGCCTAATT+AGG + chr1_2:49815173-49815192 Msa0074860:three_prime_UTR 30.0%
ATGTTAATGCCGTACATTTA+AGG + chr1_2:49815197-49815216 Msa0074860:three_prime_UTR 30.0%
CTTGAAAAATGTTGTAGTCT+TGG - chr1_2:49815271-49815290 None:intergenic 30.0%
TCAACTTGATCTCTTTATCT+TGG + chr1_2:49815293-49815312 Msa0074860:three_prime_UTR 30.0%
! AGAAATGTTGTGACATGTTT+TGG + chr1_2:49815388-49815407 Msa0074860:three_prime_UTR 30.0%
! ACAACATTATCCAATGGATT+GGG + chr1_2:49813658-49813677 Msa0074860:five_prime_UTR 30.0%
!!! AGTTTGGTTGTTTATTTTGG+AGG - chr1_2:49813758-49813777 None:intergenic 30.0%
AAAAGGACAAGATTAGATTG+AGG - chr1_2:49813812-49813831 None:intergenic 30.0%
GATAATCTTAATGTGGCAAA+AGG - chr1_2:49813829-49813848 None:intergenic 30.0%
CCAATATTGTTGGACTTTAA+AGG - chr1_2:49813987-49814006 None:intergenic 30.0%
!! CCTTTAAAGTCCAACAATAT+TGG + chr1_2:49813984-49814003 Msa0074860:CDS 30.0%
AGAAGAAGAACCAATATTGT+TGG - chr1_2:49813997-49814016 None:intergenic 30.0%
TTAAACTAGTCCACCTAAAT+TGG - chr1_2:49814503-49814522 None:intergenic 30.0%
TAGTCTCATAAGTTCATAAG+CGG + chr1_2:49814586-49814605 Msa0074860:intron 30.0%
! TTGGTTGAAATTTGAGTTTG+AGG - chr1_2:49814769-49814788 None:intergenic 30.0%
AGGAAAAAAACTTAAGGGTT+TGG - chr1_2:49814788-49814807 None:intergenic 30.0%
ATCGACAAATAACTATGCTT+TGG + chr1_2:49814921-49814940 Msa0074860:CDS 30.0%
ATACTCCTAAATGCCTAATT+AGG + chr1_2:49815173-49815192 Msa0074860:three_prime_UTR 30.0%
ATGTTAATGCCGTACATTTA+AGG + chr1_2:49815197-49815216 Msa0074860:three_prime_UTR 30.0%
CTTGAAAAATGTTGTAGTCT+TGG - chr1_2:49815271-49815290 None:intergenic 30.0%
TCAACTTGATCTCTTTATCT+TGG + chr1_2:49815293-49815312 Msa0074860:three_prime_UTR 30.0%
! AGAAATGTTGTGACATGTTT+TGG + chr1_2:49815388-49815407 Msa0074860:three_prime_UTR 30.0%
GTAGTGACAACATTATCCAA+TGG + chr1_2:49813652-49813671 Msa0074860:five_prime_UTR 35.0%
GACAACATTATCCAATGGAT+TGG + chr1_2:49813657-49813676 Msa0074860:five_prime_UTR 35.0%
!! TTATCCAATGGATTGGGATA+TGG + chr1_2:49813664-49813683 Msa0074860:five_prime_UTR 35.0%
GATTAGATTGAGGTATGAGA+GGG - chr1_2:49813802-49813821 None:intergenic 35.0%
AGATTAGATTGAGGTATGAG+AGG - chr1_2:49813803-49813822 None:intergenic 35.0%
CACAGAAAGAAAGATAGTCA+TGG + chr1_2:49813863-49813882 Msa0074860:exon 35.0%
! CTTTAAAGGGAACATCAACA+TGG - chr1_2:49813973-49813992 None:intergenic 35.0%
!! TTCTTCTAGACTTGTTGTCA+GGG + chr1_2:49814013-49814032 Msa0074860:CDS 35.0%
ATTACCTTAGAACCTCTCTT+GGG - chr1_2:49814134-49814153 None:intergenic 35.0%
AATTACCTTAGAACCTCTCT+TGG - chr1_2:49814135-49814154 None:intergenic 35.0%
! CTATCTTTAGCTAGTCTACA+CGG + chr1_2:49814550-49814569 Msa0074860:intron 35.0%
GATATTACTTTGCACTCAAC+AGG + chr1_2:49814670-49814689 Msa0074860:intron 35.0%
TGAGTTACCAAAGGATTATG+AGG - chr1_2:49814808-49814827 None:intergenic 35.0%
ACATGCCTAATTAGGCATTT+AGG - chr1_2:49815181-49815200 None:intergenic 35.0%
!! TTGCATTGGCCTTAAATGTA+CGG - chr1_2:49815209-49815228 None:intergenic 35.0%
GTCAATTTCAGTTGTTGCAT+TGG - chr1_2:49815223-49815242 None:intergenic 35.0%
GTAGTGACAACATTATCCAA+TGG + chr1_2:49813652-49813671 Msa0074860:five_prime_UTR 35.0%
GACAACATTATCCAATGGAT+TGG + chr1_2:49813657-49813676 Msa0074860:five_prime_UTR 35.0%
!! TTATCCAATGGATTGGGATA+TGG + chr1_2:49813664-49813683 Msa0074860:five_prime_UTR 35.0%
GATTAGATTGAGGTATGAGA+GGG - chr1_2:49813802-49813821 None:intergenic 35.0%
AGATTAGATTGAGGTATGAG+AGG - chr1_2:49813803-49813822 None:intergenic 35.0%
CACAGAAAGAAAGATAGTCA+TGG + chr1_2:49813863-49813882 Msa0074860:exon 35.0%
! CTTTAAAGGGAACATCAACA+TGG - chr1_2:49813973-49813992 None:intergenic 35.0%
!! TTCTTCTAGACTTGTTGTCA+GGG + chr1_2:49814013-49814032 Msa0074860:CDS 35.0%
ATTACCTTAGAACCTCTCTT+GGG - chr1_2:49814134-49814153 None:intergenic 35.0%
AATTACCTTAGAACCTCTCT+TGG - chr1_2:49814135-49814154 None:intergenic 35.0%
! CTATCTTTAGCTAGTCTACA+CGG + chr1_2:49814550-49814569 Msa0074860:intron 35.0%
GATATTACTTTGCACTCAAC+AGG + chr1_2:49814670-49814689 Msa0074860:intron 35.0%
TGAGTTACCAAAGGATTATG+AGG - chr1_2:49814808-49814827 None:intergenic 35.0%
ACATGCCTAATTAGGCATTT+AGG - chr1_2:49815181-49815200 None:intergenic 35.0%
!! TTGCATTGGCCTTAAATGTA+CGG - chr1_2:49815209-49815228 None:intergenic 35.0%
GTCAATTTCAGTTGTTGCAT+TGG - chr1_2:49815223-49815242 None:intergenic 35.0%
GATTGACACCAAAGTTTCTG+AGG + chr1_2:49813719-49813738 Msa0074860:five_prime_UTR 40.0%
CATCTCATCCTCAGAAACTT+TGG - chr1_2:49813730-49813749 None:intergenic 40.0%
GTGAGTGAAGTGTGTTAGTT+TGG - chr1_2:49813774-49813793 None:intergenic 40.0%
CCTTGATGAAGTTGTGTTGT+TGG - chr1_2:49813946-49813965 None:intergenic 40.0%
CCAACAACACAACTTCATCA+AGG + chr1_2:49813943-49813962 Msa0074860:CDS 40.0%
!! CTTCTTCTAGACTTGTTGTC+AGG + chr1_2:49814012-49814031 Msa0074860:CDS 40.0%
TTACCTTAGAACCTCTCTTG+GGG - chr1_2:49814133-49814152 None:intergenic 40.0%
CAACTAAAACTCACTTGGGT+TGG + chr1_2:49814407-49814426 Msa0074860:intron 40.0%
AGGTCTCAAGTCAATATCAC+CGG - chr1_2:49814434-49814453 None:intergenic 40.0%
AATCTCCGTAGTGCCAATTT+AGG + chr1_2:49814487-49814506 Msa0074860:intron 40.0%
ATAAGCGGTCTAAATTGACG+AGG + chr1_2:49814601-49814620 Msa0074860:intron 40.0%
TAAGCGGTCTAAATTGACGA+GGG + chr1_2:49814602-49814621 Msa0074860:intron 40.0%
CTCAACAGGTGAAGATTCTT+AGG + chr1_2:49814684-49814703 Msa0074860:intron 40.0%
ACAGGTGAAGATTCTTAGGA+AGG + chr1_2:49814688-49814707 Msa0074860:intron 40.0%
TTCTTAGGAAGGAATCCTAC+TGG + chr1_2:49814699-49814718 Msa0074860:CDS 40.0%
AAGGAATCCTACTGGTACAA+AGG + chr1_2:49814707-49814726 Msa0074860:CDS 40.0%
AACAAGAGCTGAGTTACCAA+AGG - chr1_2:49814817-49814836 None:intergenic 40.0%
! CTGATTTCTCTTTGTTGTGC+AGG + chr1_2:49814840-49814859 Msa0074860:intron 40.0%
CGGCATTAACATGCCTAATT+AGG - chr1_2:49815189-49815208 None:intergenic 40.0%
GATTGACACCAAAGTTTCTG+AGG + chr1_2:49813719-49813738 Msa0074860:five_prime_UTR 40.0%
CATCTCATCCTCAGAAACTT+TGG - chr1_2:49813730-49813749 None:intergenic 40.0%
GTGAGTGAAGTGTGTTAGTT+TGG - chr1_2:49813774-49813793 None:intergenic 40.0%
CCTTGATGAAGTTGTGTTGT+TGG - chr1_2:49813946-49813965 None:intergenic 40.0%
CCAACAACACAACTTCATCA+AGG + chr1_2:49813943-49813962 Msa0074860:CDS 40.0%
!! CTTCTTCTAGACTTGTTGTC+AGG + chr1_2:49814012-49814031 Msa0074860:CDS 40.0%
TTACCTTAGAACCTCTCTTG+GGG - chr1_2:49814133-49814152 None:intergenic 40.0%
CAACTAAAACTCACTTGGGT+TGG + chr1_2:49814407-49814426 Msa0074860:intron 40.0%
AGGTCTCAAGTCAATATCAC+CGG - chr1_2:49814434-49814453 None:intergenic 40.0%
AATCTCCGTAGTGCCAATTT+AGG + chr1_2:49814487-49814506 Msa0074860:intron 40.0%
ATAAGCGGTCTAAATTGACG+AGG + chr1_2:49814601-49814620 Msa0074860:intron 40.0%
TAAGCGGTCTAAATTGACGA+GGG + chr1_2:49814602-49814621 Msa0074860:intron 40.0%
CTCAACAGGTGAAGATTCTT+AGG + chr1_2:49814684-49814703 Msa0074860:intron 40.0%
ACAGGTGAAGATTCTTAGGA+AGG + chr1_2:49814688-49814707 Msa0074860:intron 40.0%
TTCTTAGGAAGGAATCCTAC+TGG + chr1_2:49814699-49814718 Msa0074860:CDS 40.0%
AAGGAATCCTACTGGTACAA+AGG + chr1_2:49814707-49814726 Msa0074860:CDS 40.0%
AACAAGAGCTGAGTTACCAA+AGG - chr1_2:49814817-49814836 None:intergenic 40.0%
! CTGATTTCTCTTTGTTGTGC+AGG + chr1_2:49814840-49814859 Msa0074860:intron 40.0%
CGGCATTAACATGCCTAATT+AGG - chr1_2:49815189-49815208 None:intergenic 40.0%
TGCACCATATCCCAATCCAT+TGG - chr1_2:49813671-49813690 None:intergenic 45.0%
GTCAATCGTTTCCTCCACTT+GGG - chr1_2:49813706-49813725 None:intergenic 45.0%
TGTCAATCGTTTCCTCCACT+TGG - chr1_2:49813707-49813726 None:intergenic 45.0%
GGTCTCAAGTCAATATCACC+GGG - chr1_2:49814433-49814452 None:intergenic 45.0%
GTCCACCTAAATTGGCACTA+CGG - chr1_2:49814495-49814514 None:intergenic 45.0%
! GCTAGTCTACACGGTCAAAT+CGG + chr1_2:49814559-49814578 Msa0074860:intron 45.0%
CATTGGCGTAGTTCACTTTC+TGG - chr1_2:49814900-49814919 None:intergenic 45.0%
ATTCTTAGCTGGAGTTCGAG+AGG + chr1_2:49815349-49815368 Msa0074860:three_prime_UTR 45.0%
TGCACCATATCCCAATCCAT+TGG - chr1_2:49813671-49813690 None:intergenic 45.0%
GTCAATCGTTTCCTCCACTT+GGG - chr1_2:49813706-49813725 None:intergenic 45.0%
TGTCAATCGTTTCCTCCACT+TGG - chr1_2:49813707-49813726 None:intergenic 45.0%
GGTCTCAAGTCAATATCACC+GGG - chr1_2:49814433-49814452 None:intergenic 45.0%
GTCCACCTAAATTGGCACTA+CGG - chr1_2:49814495-49814514 None:intergenic 45.0%
! GCTAGTCTACACGGTCAAAT+CGG + chr1_2:49814559-49814578 Msa0074860:intron 45.0%
CATTGGCGTAGTTCACTTTC+TGG - chr1_2:49814900-49814919 None:intergenic 45.0%
ATTCTTAGCTGGAGTTCGAG+AGG + chr1_2:49815349-49815368 Msa0074860:three_prime_UTR 45.0%
CACAAGTGTCATCACCCAAG+TGG + chr1_2:49813689-49813708 Msa0074860:five_prime_UTR 50.0%
AAGTGTCATCACCCAAGTGG+AGG + chr1_2:49813692-49813711 Msa0074860:five_prime_UTR 50.0%
!! ATTGGTGGTGGCTTGGGTTT+AGG - chr1_2:49814107-49814126 None:intergenic 50.0%
AAACCCAAGCCACCACCAAT+TGG + chr1_2:49814107-49814126 Msa0074860:CDS 50.0%
!! AAAACTCACTTGGGTTGGCC+CGG + chr1_2:49814412-49814431 Msa0074860:intron 50.0%
GATTCGAACCTGAGACCTTG+AGG - chr1_2:49814471-49814490 None:intergenic 50.0%
CTCCGTAGTGCCAATTTAGG+TGG + chr1_2:49814490-49814509 Msa0074860:intron 50.0%
! TCCTACTGGTACAAAGGCAC+TGG + chr1_2:49814713-49814732 Msa0074860:CDS 50.0%
TCCAGTGCCTTTGTACCAGT+AGG - chr1_2:49814717-49814736 None:intergenic 50.0%
! TCTGGAATCGAACCACGACA+GGG - chr1_2:49814882-49814901 None:intergenic 50.0%
!! TTCTGGAATCGAACCACGAC+AGG - chr1_2:49814883-49814902 None:intergenic 50.0%
CACAAGTGTCATCACCCAAG+TGG + chr1_2:49813689-49813708 Msa0074860:five_prime_UTR 50.0%
AAGTGTCATCACCCAAGTGG+AGG + chr1_2:49813692-49813711 Msa0074860:five_prime_UTR 50.0%
!! ATTGGTGGTGGCTTGGGTTT+AGG - chr1_2:49814107-49814126 None:intergenic 50.0%
AAACCCAAGCCACCACCAAT+TGG + chr1_2:49814107-49814126 Msa0074860:CDS 50.0%
!! AAAACTCACTTGGGTTGGCC+CGG + chr1_2:49814412-49814431 Msa0074860:intron 50.0%
GATTCGAACCTGAGACCTTG+AGG - chr1_2:49814471-49814490 None:intergenic 50.0%
CTCCGTAGTGCCAATTTAGG+TGG + chr1_2:49814490-49814509 Msa0074860:intron 50.0%
! TCCTACTGGTACAAAGGCAC+TGG + chr1_2:49814713-49814732 Msa0074860:CDS 50.0%
TCCAGTGCCTTTGTACCAGT+AGG - chr1_2:49814717-49814736 None:intergenic 50.0%
! TCTGGAATCGAACCACGACA+GGG - chr1_2:49814882-49814901 None:intergenic 50.0%
!! TTCTGGAATCGAACCACGAC+AGG - chr1_2:49814883-49814902 None:intergenic 50.0%
AGTCATGGCTAGCAGCAGCA+TGG + chr1_2:49813878-49813897 Msa0074860:exon 55.0%
AGCATGGCATCAGCAGCTAC+TGG + chr1_2:49813894-49813913 Msa0074860:CDS 55.0%
TGTTGTCAGGGCAACCGATG+AGG + chr1_2:49814025-49814044 Msa0074860:CDS 55.0%
GTTGTCAGGGCAACCGATGA+GGG + chr1_2:49814026-49814045 Msa0074860:CDS 55.0%
! GGTGGCTTGGGTTTAGGAGT+AGG - chr1_2:49814101-49814120 None:intergenic 55.0%
GAACCTCTCTTGGGGCCAAT+TGG - chr1_2:49814125-49814144 None:intergenic 55.0%
TGGCCCCAAGAGAGGTTCTA+AGG + chr1_2:49814127-49814146 Msa0074860:CDS 55.0%
! TTGAGGAGGAGCACACTCTC+AGG - chr1_2:49814454-49814473 None:intergenic 55.0%
! TGAGAGTGTGCTCCTCCTCA+AGG + chr1_2:49814453-49814472 Msa0074860:intron 55.0%
TCGAACCTGAGACCTTGAGG+AGG - chr1_2:49814468-49814487 None:intergenic 55.0%
ACGACAGGGTAGCGAGTCTT+GGG - chr1_2:49814868-49814887 None:intergenic 55.0%
CTTAGCTGGAGTTCGAGAGG+AGG + chr1_2:49815352-49815371 Msa0074860:three_prime_UTR 55.0%
AGTCATGGCTAGCAGCAGCA+TGG + chr1_2:49813878-49813897 Msa0074860:exon 55.0%
AGCATGGCATCAGCAGCTAC+TGG + chr1_2:49813894-49813913 Msa0074860:CDS 55.0%
TGTTGTCAGGGCAACCGATG+AGG + chr1_2:49814025-49814044 Msa0074860:CDS 55.0%
GTTGTCAGGGCAACCGATGA+GGG + chr1_2:49814026-49814045 Msa0074860:CDS 55.0%
! GGTGGCTTGGGTTTAGGAGT+AGG - chr1_2:49814101-49814120 None:intergenic 55.0%
GAACCTCTCTTGGGGCCAAT+TGG - chr1_2:49814125-49814144 None:intergenic 55.0%
TGGCCCCAAGAGAGGTTCTA+AGG + chr1_2:49814127-49814146 Msa0074860:CDS 55.0%
! TTGAGGAGGAGCACACTCTC+AGG - chr1_2:49814454-49814473 None:intergenic 55.0%
! TGAGAGTGTGCTCCTCCTCA+AGG + chr1_2:49814453-49814472 Msa0074860:intron 55.0%
TCGAACCTGAGACCTTGAGG+AGG - chr1_2:49814468-49814487 None:intergenic 55.0%
ACGACAGGGTAGCGAGTCTT+GGG - chr1_2:49814868-49814887 None:intergenic 55.0%
CTTAGCTGGAGTTCGAGAGG+AGG + chr1_2:49815352-49815371 Msa0074860:three_prime_UTR 55.0%
ATCACCAGCTGGAGCAGTGG+AGG - chr1_2:49814072-49814091 None:intergenic 60.0%
AGCATCACCAGCTGGAGCAG+TGG - chr1_2:49814075-49814094 None:intergenic 60.0%
GTAGGAGCAGCATCACCAGC+TGG - chr1_2:49814083-49814102 None:intergenic 60.0%
!! GGGCCAATTGGTGGTGGCTT+GGG - chr1_2:49814113-49814132 None:intergenic 60.0%
CTCTTGGGGCCAATTGGTGG+TGG - chr1_2:49814119-49814138 None:intergenic 60.0%
CCTCTCTTGGGGCCAATTGG+TGG - chr1_2:49814122-49814141 None:intergenic 60.0%
CCACCAATTGGCCCCAAGAG+AGG + chr1_2:49814119-49814138 Msa0074860:CDS 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG + chr1_2:49814460-49814479 Msa0074860:intron 60.0%
CGACAGGGTAGCGAGTCTTG+GGG - chr1_2:49814867-49814886 None:intergenic 60.0%
CACGACAGGGTAGCGAGTCT+TGG - chr1_2:49814869-49814888 None:intergenic 60.0%
CAAGACTCGCTACCCTGTCG+TGG + chr1_2:49814867-49814886 Msa0074860:CDS 60.0%
ATCACCAGCTGGAGCAGTGG+AGG - chr1_2:49814072-49814091 None:intergenic 60.0%
AGCATCACCAGCTGGAGCAG+TGG - chr1_2:49814075-49814094 None:intergenic 60.0%
GTAGGAGCAGCATCACCAGC+TGG - chr1_2:49814083-49814102 None:intergenic 60.0%
!! GGGCCAATTGGTGGTGGCTT+GGG - chr1_2:49814113-49814132 None:intergenic 60.0%
CTCTTGGGGCCAATTGGTGG+TGG - chr1_2:49814119-49814138 None:intergenic 60.0%
CCTCTCTTGGGGCCAATTGG+TGG - chr1_2:49814122-49814141 None:intergenic 60.0%
CCACCAATTGGCCCCAAGAG+AGG + chr1_2:49814119-49814138 Msa0074860:CDS 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG + chr1_2:49814460-49814479 Msa0074860:intron 60.0%
CGACAGGGTAGCGAGTCTTG+GGG - chr1_2:49814867-49814886 None:intergenic 60.0%
CACGACAGGGTAGCGAGTCT+TGG - chr1_2:49814869-49814888 None:intergenic 60.0%
CAAGACTCGCTACCCTGTCG+TGG + chr1_2:49814867-49814886 Msa0074860:CDS 60.0%
!! GGGGCCAATTGGTGGTGGCT+TGG - chr1_2:49814114-49814133 None:intergenic 65.0%
!! GGGGCCAATTGGTGGTGGCT+TGG - chr1_2:49814114-49814133 None:intergenic 65.0%
!! GGCAACCGATGAGGGTGCCC+CGG + chr1_2:49814034-49814053 Msa0074860:CDS 70.0%
! TGCAGCCGGGGCACCCTCAT+CGG - chr1_2:49814042-49814061 None:intergenic 70.0%
TGGAGGCAGCAGGTGCAGCC+GGG - chr1_2:49814055-49814074 None:intergenic 70.0%
GTGGAGGCAGCAGGTGCAGC+CGG - chr1_2:49814056-49814075 None:intergenic 70.0%
GCTGGAGCAGTGGAGGCAGC+AGG - chr1_2:49814065-49814084 None:intergenic 70.0%
GCTGCCTCCACTGCTCCAGC+TGG + chr1_2:49814065-49814084 Msa0074860:CDS 70.0%
!! GGCAACCGATGAGGGTGCCC+CGG + chr1_2:49814034-49814053 Msa0074860:CDS 70.0%
! TGCAGCCGGGGCACCCTCAT+CGG - chr1_2:49814042-49814061 None:intergenic 70.0%
TGGAGGCAGCAGGTGCAGCC+GGG - chr1_2:49814055-49814074 None:intergenic 70.0%
GTGGAGGCAGCAGGTGCAGC+CGG - chr1_2:49814056-49814075 None:intergenic 70.0%
GCTGGAGCAGTGGAGGCAGC+AGG - chr1_2:49814065-49814084 None:intergenic 70.0%
GCTGCCTCCACTGCTCCAGC+TGG + chr1_2:49814065-49814084 Msa0074860:CDS 70.0%
GGAGGCAGCAGGTGCAGCCG+GGG - chr1_2:49814054-49814073 None:intergenic 75.0%
GGAGGCAGCAGGTGCAGCCG+GGG - chr1_2:49814054-49814073 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 49813612 49815441 49813612 ID=Msa0074860;Name=Msa0074860
chr1_2 mRNA 49813612 49815441 49813612 ID=Msa0074860-mRNA-1;Parent=Msa0074860;Name=Msa0074860-mRNA-1;_AED=0.00;_eAED=0.00;_QI=270|1|1|1|1|1|3|475|145
chr1_2 exon 49813612 49814148 49813612 ID=Msa0074860-mRNA-1:exon:15233;Parent=Msa0074860-mRNA-1
chr1_2 exon 49814692 49814757 49814692 ID=Msa0074860-mRNA-1:exon:15234;Parent=Msa0074860-mRNA-1
chr1_2 exon 49814862 49815441 49814862 ID=Msa0074860-mRNA-1:exon:15235;Parent=Msa0074860-mRNA-1
chr1_2 five_prime_UTR 49813612 49813881 49813612 ID=Msa0074860-mRNA-1:five_prime_utr;Parent=Msa0074860-mRNA-1
chr1_2 CDS 49813882 49814148 49813882 ID=Msa0074860-mRNA-1:cds;Parent=Msa0074860-mRNA-1
chr1_2 CDS 49814692 49814757 49814692 ID=Msa0074860-mRNA-1:cds;Parent=Msa0074860-mRNA-1
chr1_2 CDS 49814862 49814966 49814862 ID=Msa0074860-mRNA-1:cds;Parent=Msa0074860-mRNA-1
chr1_2 three_prime_UTR 49814967 49815441 49814967 ID=Msa0074860-mRNA-1:three_prime_utr;Parent=Msa0074860-mRNA-1
Gene Sequence

>Msa0074860

ATGGCTAGCAGCAGCATGGCATCAGCAGCTACTGGATTTTTGTTGTCACTTAATGTTGCTTCCAACAACACAACTTCATCAAGGAGTACCATGTTGATGTTCCCTTTAAAGTCCAACAATATTGGTTCTTCTTCTTCTAGACTTGTTGTCAGGGCAACCGATGAGGGTGCCCCGGCTGCACCTGCTGCCTCCACTGCTCCAGCTGGTGATGCTGCTCCTACTCCTAAACCCAAGCCACCACCAATTGGCCCCAAGAGAGGTTCTAAGGTGAAGATTCTTAGGAAGGAATCCTACTGGTACAAAGGCACTGGATCAGTTGTTGCTGTTGATCAAGACCCCAAGACTCGCTACCCTGTCGTGGTTCGATTCCAGAAAGTGAACTACGCCAATGTATCGACAAATAACTATGCTTTGGATGAGATTGAAGAAGTTGTTTAA

Protein sequence

>Msa0074860

MASSSMASAATGFLLSLNVASNNTTSSRSTMLMFPLKSNNIGSSSSRLVVRATDEGAPAAPAASTAPAGDAAPTPKPKPPPIGPKRGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRFQKVNYANVSTNNYALDEIEEVV*