AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0012240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0012240 MtrunA17_Chr1g0160841 96.629 89 3 0 2 90 850 938 3.10e-52 174
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0012240 AT3G10690.1 82.927 82 14 0 2 83 856 937 1.76e-38 135

Find 44 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAGGTGATATTAATTTAA+AGG 0.209160 1_1:+18436593 Msa0012240:three_prime_UTR
GCACTCCGTTGCTGAGATTA+AGG 0.308158 1_1:-18436258 None:intergenic
TTCAAATTTACCTAGCAAAT+CGG 0.321204 1_1:-18436062 None:intergenic
ATAAATATGTTACACATAAT+AGG 0.334970 1_1:-18436461 None:intergenic
GCCCTTCTCTCAACAACCTT+TGG 0.339110 1_1:-18436512 None:intergenic
AATTCAAATAGATGAGTATT+GGG 0.339212 1_1:+18436646 Msa0012240:three_prime_UTR
GCGATATCAAGTTCTTCTTC+AGG 0.376114 1_1:-18436284 None:intergenic
CTTGCTGCCGTATTTGTAGT+AGG 0.379437 1_1:+18435374 Msa0012240:CDS
AATCTTATTTATTCCAAAGA+AGG 0.407479 1_1:+18436688 Msa0012240:three_prime_UTR
TCAAATTTACCTAGCAAATC+GGG 0.414586 1_1:-18436061 None:intergenic
CAGTCAACAGGATTAAAGTT+CGG 0.430790 1_1:+18436022 Msa0012240:CDS
CATTCATCTACAACTAGCCT+TGG 0.436503 1_1:-18436307 None:intergenic
GAATTCAAATAGATGAGTAT+TGG 0.438611 1_1:+18436645 Msa0012240:three_prime_UTR
GTAGTAGGATTCACATTAGC+AGG 0.444284 1_1:+18435389 Msa0012240:CDS
GCCAAAGTGGTACAGTCAAC+AGG 0.456273 1_1:+18436010 Msa0012240:CDS
AGTCAACAGGATTAAAGTTC+GGG 0.474659 1_1:+18436023 Msa0012240:CDS
TCCTGTTGACTGTACCACTT+TGG 0.476525 1_1:-18436011 None:intergenic
TCCGCAGAAAACTGAAACAT+AGG 0.483986 1_1:-18435344 None:intergenic
TGTGAATCCTACTACAAATA+CGG 0.493089 1_1:-18435381 None:intergenic
GCCTAGGTACCTGTCTGACT+TGG 0.498599 1_1:+18436347 Msa0012240:three_prime_UTR
TTCCAAAGGTTGTTGAGAGA+AGG 0.506256 1_1:+18436510 Msa0012240:three_prime_UTR
CAATTCAATCCCGATTTGCT+AGG 0.508806 1_1:+18436052 Msa0012240:CDS
AAAGCCTCACCAAACAAGTC+TGG 0.511247 1_1:-18436716 None:intergenic
TTAGAAAAGTATACTTGCCT+AGG 0.522991 1_1:+18436331 Msa0012240:three_prime_UTR
AAGACAAAATCCCCGCCCTT+CGG 0.526778 1_1:-18436489 None:intergenic
TCCAAAGGTTGTTGAGAGAA+GGG 0.534707 1_1:+18436511 Msa0012240:three_prime_UTR
GGCTATACTCCAAGTCAGAC+AGG 0.546983 1_1:-18436356 None:intergenic
GTGGTTCTTGTTAGCCAAAG+TGG 0.551421 1_1:+18435997 Msa0012240:CDS
ACCGCTTGATCTTGAATCCG+TGG 0.551535 1_1:+18436393 Msa0012240:three_prime_UTR
GGGTAGTGATATGCTTTCAA+TGG 0.552302 1_1:+18436414 Msa0012240:three_prime_UTR
ATTCATCTACAACTAGCCTT+GGG 0.566651 1_1:-18436306 None:intergenic
TTGATGCGACTTGATCATGC+TGG 0.585646 1_1:+18436218 Msa0012240:CDS
AAAACCAGACTTGTTTGGTG+AGG 0.602979 1_1:+18436712 Msa0012240:three_prime_UTR
CTATTGAAAACACGCATCTG+AGG 0.611612 1_1:+18436576 Msa0012240:three_prime_UTR
CCGCTTGATCTTGAATCCGT+GGG 0.612299 1_1:+18436394 Msa0012240:three_prime_UTR
TGCTTCCTTAATCTCAGCAA+CGG 0.627309 1_1:+18436253 Msa0012240:CDS
TGAAAGCATATCACTACCCA+CGG 0.632145 1_1:-18436410 None:intergenic
GAAGAACTTGATATCGCCCA+AGG 0.634206 1_1:+18436290 Msa0012240:CDS
TCCAAGTCAGACAGGTACCT+AGG 0.638354 1_1:-18436348 None:intergenic
CCCACGGATTCAAGATCAAG+CGG 0.643900 1_1:-18436394 None:intergenic
CTACTACAAATACGGCAGCA+AGG 0.662886 1_1:-18435373 None:intergenic
TGGTGAAAGTGATGAACAAG+TGG 0.674126 1_1:+18435978 Msa0012240:CDS
GTTACACATAATAGGTAACG+AGG 0.736749 1_1:-18436453 None:intergenic
ACACATAATAGGTAACGAGG+AGG 0.737689 1_1:-18436450 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGTTTATCATTTATAATT+TGG + chr1_1:18435429-18435448 Msa0012240:intron 10.0%
!! GATTATTATATGTTAATATA+AGG + chr1_1:18435785-18435804 Msa0012240:intron 10.0%
!! TTAGTTTATCATTTATAATT+TGG + chr1_1:18435429-18435448 Msa0012240:intron 10.0%
!! GATTATTATATGTTAATATA+AGG + chr1_1:18435785-18435804 Msa0012240:intron 10.0%
!!! TAACTTGTTAAGTATTTATT+TGG - chr1_1:18435654-18435673 None:intergenic 15.0%
!! ATAAATATGTTACACATAAT+AGG - chr1_1:18436464-18436483 None:intergenic 15.0%
!!! TAACTTGTTAAGTATTTATT+TGG - chr1_1:18435654-18435673 None:intergenic 15.0%
!! ATAAATATGTTACACATAAT+AGG - chr1_1:18436464-18436483 None:intergenic 15.0%
!! CTGATCATTGTTTAAAAAAT+TGG + chr1_1:18435460-18435479 Msa0012240:intron 20.0%
!!! TGATTCTTAATGGTATTTTT+TGG - chr1_1:18435551-18435570 None:intergenic 20.0%
!! TTTATATCTTTACAAGTAGA+AGG + chr1_1:18435757-18435776 Msa0012240:intron 20.0%
!!! TCTGTAATGACTATTTTATT+TGG + chr1_1:18436171-18436190 Msa0012240:intron 20.0%
!!! CTATTTTATTTGGTGAATTT+TGG + chr1_1:18436181-18436200 Msa0012240:intron 20.0%
!! AATTCAAATAGATGAGTATT+GGG + chr1_1:18436646-18436665 Msa0012240:three_prime_UTR 20.0%
!!! AATCTTATTTATTCCAAAGA+AGG + chr1_1:18436688-18436707 Msa0012240:three_prime_UTR 20.0%
!! CTGATCATTGTTTAAAAAAT+TGG + chr1_1:18435460-18435479 Msa0012240:intron 20.0%
!!! TGATTCTTAATGGTATTTTT+TGG - chr1_1:18435551-18435570 None:intergenic 20.0%
!! TTTATATCTTTACAAGTAGA+AGG + chr1_1:18435757-18435776 Msa0012240:intron 20.0%
!!! TCTGTAATGACTATTTTATT+TGG + chr1_1:18436171-18436190 Msa0012240:intron 20.0%
!!! CTATTTTATTTGGTGAATTT+TGG + chr1_1:18436181-18436200 Msa0012240:intron 20.0%
!! AATTCAAATAGATGAGTATT+GGG + chr1_1:18436646-18436665 Msa0012240:three_prime_UTR 20.0%
!!! AATCTTATTTATTCCAAAGA+AGG + chr1_1:18436688-18436707 Msa0012240:three_prime_UTR 20.0%
! GATAAACTAAGTTACATTGA+GGG - chr1_1:18435419-18435438 None:intergenic 25.0%
! TGATAAACTAAGTTACATTG+AGG - chr1_1:18435420-18435439 None:intergenic 25.0%
! CATTGTTTAAAAAATTGGAC+TGG + chr1_1:18435465-18435484 Msa0012240:intron 25.0%
! TAGTGATTTAAGCAGAAAAT+TGG + chr1_1:18435504-18435523 Msa0012240:intron 25.0%
!!! AGTTTTTGACTGATTCTTAA+TGG - chr1_1:18435561-18435580 None:intergenic 25.0%
! ATTAAGAATCAGTCAAAAAC+TGG + chr1_1:18435560-18435579 Msa0012240:intron 25.0%
! TAGCAATATGTAATTATCAC+TGG + chr1_1:18435862-18435881 Msa0012240:intron 25.0%
! TTTGTAGCAAGAAGTAAAAT+CGG - chr1_1:18435921-18435940 None:intergenic 25.0%
! TTCAAATTTACCTAGCAAAT+CGG - chr1_1:18436065-18436084 None:intergenic 25.0%
! AATCTCAGAATCAAATAAGA+GGG - chr1_1:18436109-18436128 None:intergenic 25.0%
! TAATCTCAGAATCAAATAAG+AGG - chr1_1:18436110-18436129 None:intergenic 25.0%
!!! AACATATTTATTTTGTCCGA+AGG + chr1_1:18436473-18436492 Msa0012240:three_prime_UTR 25.0%
!!! ACATATTTATTTTGTCCGAA+GGG + chr1_1:18436474-18436493 Msa0012240:three_prime_UTR 25.0%
! CTGAGGTGATATTAATTTAA+AGG + chr1_1:18436593-18436612 Msa0012240:three_prime_UTR 25.0%
! GAATTCAAATAGATGAGTAT+TGG + chr1_1:18436645-18436664 Msa0012240:three_prime_UTR 25.0%
! GATAAACTAAGTTACATTGA+GGG - chr1_1:18435419-18435438 None:intergenic 25.0%
! TGATAAACTAAGTTACATTG+AGG - chr1_1:18435420-18435439 None:intergenic 25.0%
! CATTGTTTAAAAAATTGGAC+TGG + chr1_1:18435465-18435484 Msa0012240:intron 25.0%
! TAGTGATTTAAGCAGAAAAT+TGG + chr1_1:18435504-18435523 Msa0012240:intron 25.0%
!!! AGTTTTTGACTGATTCTTAA+TGG - chr1_1:18435561-18435580 None:intergenic 25.0%
! ATTAAGAATCAGTCAAAAAC+TGG + chr1_1:18435560-18435579 Msa0012240:intron 25.0%
! TAGCAATATGTAATTATCAC+TGG + chr1_1:18435862-18435881 Msa0012240:intron 25.0%
! TTTGTAGCAAGAAGTAAAAT+CGG - chr1_1:18435921-18435940 None:intergenic 25.0%
! TTCAAATTTACCTAGCAAAT+CGG - chr1_1:18436065-18436084 None:intergenic 25.0%
! AATCTCAGAATCAAATAAGA+GGG - chr1_1:18436109-18436128 None:intergenic 25.0%
! TAATCTCAGAATCAAATAAG+AGG - chr1_1:18436110-18436129 None:intergenic 25.0%
!!! AACATATTTATTTTGTCCGA+AGG + chr1_1:18436473-18436492 Msa0012240:three_prime_UTR 25.0%
!!! ACATATTTATTTTGTCCGAA+GGG + chr1_1:18436474-18436493 Msa0012240:three_prime_UTR 25.0%
! CTGAGGTGATATTAATTTAA+AGG + chr1_1:18436593-18436612 Msa0012240:three_prime_UTR 25.0%
! GAATTCAAATAGATGAGTAT+TGG + chr1_1:18436645-18436664 Msa0012240:three_prime_UTR 25.0%
TGTGAATCCTACTACAAATA+CGG - chr1_1:18435384-18435403 None:intergenic 30.0%
AGTCAAAAACTGGTTAAAGT+TGG + chr1_1:18435570-18435589 Msa0012240:intron 30.0%
AGTAAAATCGGTACTTCTAA+AGG - chr1_1:18435909-18435928 None:intergenic 30.0%
AAAAATCATTGTCTCAACAG+AGG + chr1_1:18435954-18435973 Msa0012240:intron 30.0%
TCAAATTTACCTAGCAAATC+GGG - chr1_1:18436064-18436083 None:intergenic 30.0%
TAAGAGGGAAATATACAACA+TGG - chr1_1:18436094-18436113 None:intergenic 30.0%
!! TTATTTGGTGAATTTTGGTC+AGG + chr1_1:18436186-18436205 Msa0012240:intron 30.0%
!! TATTTGGTGAATTTTGGTCA+GGG + chr1_1:18436187-18436206 Msa0012240:intron 30.0%
! TTAGAAAAGTATACTTGCCT+AGG + chr1_1:18436331-18436350 Msa0012240:three_prime_UTR 30.0%
TGTGAATCCTACTACAAATA+CGG - chr1_1:18435384-18435403 None:intergenic 30.0%
AGTCAAAAACTGGTTAAAGT+TGG + chr1_1:18435570-18435589 Msa0012240:intron 30.0%
AGTAAAATCGGTACTTCTAA+AGG - chr1_1:18435909-18435928 None:intergenic 30.0%
AAAAATCATTGTCTCAACAG+AGG + chr1_1:18435954-18435973 Msa0012240:intron 30.0%
TCAAATTTACCTAGCAAATC+GGG - chr1_1:18436064-18436083 None:intergenic 30.0%
TAAGAGGGAAATATACAACA+TGG - chr1_1:18436094-18436113 None:intergenic 30.0%
!! TTATTTGGTGAATTTTGGTC+AGG + chr1_1:18436186-18436205 Msa0012240:intron 30.0%
!! TATTTGGTGAATTTTGGTCA+GGG + chr1_1:18436187-18436206 Msa0012240:intron 30.0%
! TTAGAAAAGTATACTTGCCT+AGG + chr1_1:18436331-18436350 Msa0012240:three_prime_UTR 30.0%
! ACATACGCACATGATTTTTC+TGG + chr1_1:18435679-18435698 Msa0012240:intron 35.0%
CAGTCAACAGGATTAAAGTT+CGG + chr1_1:18436022-18436041 Msa0012240:CDS 35.0%
AGTCAACAGGATTAAAGTTC+GGG + chr1_1:18436023-18436042 Msa0012240:CDS 35.0%
TAAGCTTATGACAAGTGTCT+TGG + chr1_1:18436136-18436155 Msa0012240:intron 35.0%
ATAGTCATTACAGAAGCAGT+AGG - chr1_1:18436165-18436184 None:intergenic 35.0%
!! ATTTGGTGAATTTTGGTCAG+GGG + chr1_1:18436188-18436207 Msa0012240:intron 35.0%
!! ATTCATCTACAACTAGCCTT+GGG - chr1_1:18436309-18436328 None:intergenic 35.0%
! AAGCGGTATCATTTTGTGAA+GGG - chr1_1:18436380-18436399 None:intergenic 35.0%
GTTACACATAATAGGTAACG+AGG - chr1_1:18436456-18436475 None:intergenic 35.0%
!!! TATTTATTTTGTCCGAAGGG+CGG + chr1_1:18436477-18436496 Msa0012240:three_prime_UTR 35.0%
!!! AAGTCTGGTTTTTCCTTCTT+TGG - chr1_1:18436704-18436723 None:intergenic 35.0%
! AAGGAAAAACCAGACTTGTT+TGG + chr1_1:18436707-18436726 Msa0012240:three_prime_UTR 35.0%
! GGCTTTCTTTTGTACTATTG+TGG + chr1_1:18436733-18436752 Msa0012240:three_prime_UTR 35.0%
! ACATACGCACATGATTTTTC+TGG + chr1_1:18435679-18435698 Msa0012240:intron 35.0%
CAGTCAACAGGATTAAAGTT+CGG + chr1_1:18436022-18436041 Msa0012240:CDS 35.0%
AGTCAACAGGATTAAAGTTC+GGG + chr1_1:18436023-18436042 Msa0012240:CDS 35.0%
TAAGCTTATGACAAGTGTCT+TGG + chr1_1:18436136-18436155 Msa0012240:intron 35.0%
ATAGTCATTACAGAAGCAGT+AGG - chr1_1:18436165-18436184 None:intergenic 35.0%
!! ATTTGGTGAATTTTGGTCAG+GGG + chr1_1:18436188-18436207 Msa0012240:intron 35.0%
!! ATTCATCTACAACTAGCCTT+GGG - chr1_1:18436309-18436328 None:intergenic 35.0%
! AAGCGGTATCATTTTGTGAA+GGG - chr1_1:18436380-18436399 None:intergenic 35.0%
GTTACACATAATAGGTAACG+AGG - chr1_1:18436456-18436475 None:intergenic 35.0%
!!! TATTTATTTTGTCCGAAGGG+CGG + chr1_1:18436477-18436496 Msa0012240:three_prime_UTR 35.0%
!!! AAGTCTGGTTTTTCCTTCTT+TGG - chr1_1:18436704-18436723 None:intergenic 35.0%
! AAGGAAAAACCAGACTTGTT+TGG + chr1_1:18436707-18436726 Msa0012240:three_prime_UTR 35.0%
GTAGTAGGATTCACATTAGC+AGG + chr1_1:18435389-18435408 Msa0012240:CDS 40.0%
!! TAATTATCACTGGTTCGCCA+GGG + chr1_1:18435872-18435891 Msa0012240:intron 40.0%
TAAAGGTTCAACTTCAACCC+TGG - chr1_1:18435892-18435911 None:intergenic 40.0%
ATCATTGTCTCAACAGAGGA+TGG + chr1_1:18435958-18435977 Msa0012240:intron 40.0%
TGGTGAAAGTGATGAACAAG+TGG + chr1_1:18435978-18435997 Msa0012240:CDS 40.0%
! CAATTCAATCCCGATTTGCT+AGG + chr1_1:18436052-18436071 Msa0012240:CDS 40.0%
TGCTTCCTTAATCTCAGCAA+CGG + chr1_1:18436253-18436272 Msa0012240:CDS 40.0%
GCGATATCAAGTTCTTCTTC+AGG - chr1_1:18436287-18436306 None:intergenic 40.0%
! CATTCATCTACAACTAGCCT+TGG - chr1_1:18436310-18436329 None:intergenic 40.0%
! CAAGCGGTATCATTTTGTGA+AGG - chr1_1:18436381-18436400 None:intergenic 40.0%
! TGAAAGCATATCACTACCCA+CGG - chr1_1:18436413-18436432 None:intergenic 40.0%
GGGTAGTGATATGCTTTCAA+TGG + chr1_1:18436414-18436433 Msa0012240:three_prime_UTR 40.0%
ACACATAATAGGTAACGAGG+AGG - chr1_1:18436453-18436472 None:intergenic 40.0%
!!! ATTTATTTTGTCCGAAGGGC+GGG + chr1_1:18436478-18436497 Msa0012240:three_prime_UTR 40.0%
TTCCAAAGGTTGTTGAGAGA+AGG + chr1_1:18436510-18436529 Msa0012240:three_prime_UTR 40.0%
TCCAAAGGTTGTTGAGAGAA+GGG + chr1_1:18436511-18436530 Msa0012240:three_prime_UTR 40.0%
CTATTGAAAACACGCATCTG+AGG + chr1_1:18436576-18436595 Msa0012240:three_prime_UTR 40.0%
! AAAACCAGACTTGTTTGGTG+AGG + chr1_1:18436712-18436731 Msa0012240:three_prime_UTR 40.0%
GTAGTAGGATTCACATTAGC+AGG + chr1_1:18435389-18435408 Msa0012240:CDS 40.0%
!! TAATTATCACTGGTTCGCCA+GGG + chr1_1:18435872-18435891 Msa0012240:intron 40.0%
TAAAGGTTCAACTTCAACCC+TGG - chr1_1:18435892-18435911 None:intergenic 40.0%
ATCATTGTCTCAACAGAGGA+TGG + chr1_1:18435958-18435977 Msa0012240:intron 40.0%
TGGTGAAAGTGATGAACAAG+TGG + chr1_1:18435978-18435997 Msa0012240:CDS 40.0%
! CAATTCAATCCCGATTTGCT+AGG + chr1_1:18436052-18436071 Msa0012240:CDS 40.0%
TGCTTCCTTAATCTCAGCAA+CGG + chr1_1:18436253-18436272 Msa0012240:CDS 40.0%
GCGATATCAAGTTCTTCTTC+AGG - chr1_1:18436287-18436306 None:intergenic 40.0%
! CATTCATCTACAACTAGCCT+TGG - chr1_1:18436310-18436329 None:intergenic 40.0%
! CAAGCGGTATCATTTTGTGA+AGG - chr1_1:18436381-18436400 None:intergenic 40.0%
! TGAAAGCATATCACTACCCA+CGG - chr1_1:18436413-18436432 None:intergenic 40.0%
GGGTAGTGATATGCTTTCAA+TGG + chr1_1:18436414-18436433 Msa0012240:three_prime_UTR 40.0%
ACACATAATAGGTAACGAGG+AGG - chr1_1:18436453-18436472 None:intergenic 40.0%
!!! ATTTATTTTGTCCGAAGGGC+GGG + chr1_1:18436478-18436497 Msa0012240:three_prime_UTR 40.0%
TTCCAAAGGTTGTTGAGAGA+AGG + chr1_1:18436510-18436529 Msa0012240:three_prime_UTR 40.0%
TCCAAAGGTTGTTGAGAGAA+GGG + chr1_1:18436511-18436530 Msa0012240:three_prime_UTR 40.0%
CTATTGAAAACACGCATCTG+AGG + chr1_1:18436576-18436595 Msa0012240:three_prime_UTR 40.0%
! AAAACCAGACTTGTTTGGTG+AGG + chr1_1:18436712-18436731 Msa0012240:three_prime_UTR 40.0%
CTACTACAAATACGGCAGCA+AGG - chr1_1:18435376-18435395 None:intergenic 45.0%
CTTGCTGCCGTATTTGTAGT+AGG + chr1_1:18435374-18435393 Msa0012240:CDS 45.0%
! TTGGACTGGACTAGACTAGA+TGG + chr1_1:18435479-18435498 Msa0012240:intron 45.0%
!! GTAATTATCACTGGTTCGCC+AGG + chr1_1:18435871-18435890 Msa0012240:intron 45.0%
GTGGTTCTTGTTAGCCAAAG+TGG + chr1_1:18435997-18436016 Msa0012240:CDS 45.0%
! TCCTGTTGACTGTACCACTT+TGG - chr1_1:18436014-18436033 None:intergenic 45.0%
TTGATGCGACTTGATCATGC+TGG + chr1_1:18436218-18436237 Msa0012240:CDS 45.0%
GAAGAACTTGATATCGCCCA+AGG + chr1_1:18436290-18436309 Msa0012240:CDS 45.0%
!!! TTTATTTTGTCCGAAGGGCG+GGG + chr1_1:18436479-18436498 Msa0012240:three_prime_UTR 45.0%
AAAGCCTCACCAAACAAGTC+TGG - chr1_1:18436719-18436738 None:intergenic 45.0%
CTACTACAAATACGGCAGCA+AGG - chr1_1:18435376-18435395 None:intergenic 45.0%
CTTGCTGCCGTATTTGTAGT+AGG + chr1_1:18435374-18435393 Msa0012240:CDS 45.0%
! TTGGACTGGACTAGACTAGA+TGG + chr1_1:18435479-18435498 Msa0012240:intron 45.0%
!! GTAATTATCACTGGTTCGCC+AGG + chr1_1:18435871-18435890 Msa0012240:intron 45.0%
GTGGTTCTTGTTAGCCAAAG+TGG + chr1_1:18435997-18436016 Msa0012240:CDS 45.0%
! TCCTGTTGACTGTACCACTT+TGG - chr1_1:18436014-18436033 None:intergenic 45.0%
TTGATGCGACTTGATCATGC+TGG + chr1_1:18436218-18436237 Msa0012240:CDS 45.0%
GAAGAACTTGATATCGCCCA+AGG + chr1_1:18436290-18436309 Msa0012240:CDS 45.0%
!!! TTTATTTTGTCCGAAGGGCG+GGG + chr1_1:18436479-18436498 Msa0012240:three_prime_UTR 45.0%
AAAGCCTCACCAAACAAGTC+TGG - chr1_1:18436719-18436738 None:intergenic 45.0%
GCCAAAGTGGTACAGTCAAC+AGG + chr1_1:18436010-18436029 Msa0012240:CDS 50.0%
GCACTCCGTTGCTGAGATTA+AGG - chr1_1:18436261-18436280 None:intergenic 50.0%
TCCAAGTCAGACAGGTACCT+AGG - chr1_1:18436351-18436370 None:intergenic 50.0%
GGCTATACTCCAAGTCAGAC+AGG - chr1_1:18436359-18436378 None:intergenic 50.0%
ACCGCTTGATCTTGAATCCG+TGG + chr1_1:18436393-18436412 Msa0012240:three_prime_UTR 50.0%
CCCACGGATTCAAGATCAAG+CGG - chr1_1:18436397-18436416 None:intergenic 50.0%
CCGCTTGATCTTGAATCCGT+GGG + chr1_1:18436394-18436413 Msa0012240:three_prime_UTR 50.0%
AAGACAAAATCCCCGCCCTT+CGG - chr1_1:18436492-18436511 None:intergenic 50.0%
! GCGGGGATTTTGTCTTCCAA+AGG + chr1_1:18436496-18436515 Msa0012240:three_prime_UTR 50.0%
GCCCTTCTCTCAACAACCTT+TGG - chr1_1:18436515-18436534 None:intergenic 50.0%
GCCAAAGTGGTACAGTCAAC+AGG + chr1_1:18436010-18436029 Msa0012240:CDS 50.0%
GCACTCCGTTGCTGAGATTA+AGG - chr1_1:18436261-18436280 None:intergenic 50.0%
TCCAAGTCAGACAGGTACCT+AGG - chr1_1:18436351-18436370 None:intergenic 50.0%
GGCTATACTCCAAGTCAGAC+AGG - chr1_1:18436359-18436378 None:intergenic 50.0%
ACCGCTTGATCTTGAATCCG+TGG + chr1_1:18436393-18436412 Msa0012240:three_prime_UTR 50.0%
CCCACGGATTCAAGATCAAG+CGG - chr1_1:18436397-18436416 None:intergenic 50.0%
CCGCTTGATCTTGAATCCGT+GGG + chr1_1:18436394-18436413 Msa0012240:three_prime_UTR 50.0%
AAGACAAAATCCCCGCCCTT+CGG - chr1_1:18436492-18436511 None:intergenic 50.0%
! GCGGGGATTTTGTCTTCCAA+AGG + chr1_1:18436496-18436515 Msa0012240:three_prime_UTR 50.0%
GCCCTTCTCTCAACAACCTT+TGG - chr1_1:18436515-18436534 None:intergenic 50.0%
GCCTAGGTACCTGTCTGACT+TGG + chr1_1:18436347-18436366 Msa0012240:three_prime_UTR 55.0%
GCCTAGGTACCTGTCTGACT+TGG + chr1_1:18436347-18436366 Msa0012240:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 18435347 18436755 18435347 ID=Msa0012240;Name=Msa0012240
chr1_1 mRNA 18435347 18436755 18435347 ID=Msa0012240-mRNA-1;Parent=Msa0012240;Name=Msa0012240-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|0.66|1|1|3|439|90
chr1_1 exon 18435347 18435410 18435347 ID=Msa0012240-mRNA-1:exon:6747;Parent=Msa0012240-mRNA-1
chr1_1 exon 18435974 18436073 18435974 ID=Msa0012240-mRNA-1:exon:6748;Parent=Msa0012240-mRNA-1
chr1_1 exon 18436208 18436755 18436208 ID=Msa0012240-mRNA-1:exon:6749;Parent=Msa0012240-mRNA-1
chr1_1 CDS 18435347 18435410 18435347 ID=Msa0012240-mRNA-1:cds;Parent=Msa0012240-mRNA-1
chr1_1 CDS 18435974 18436073 18435974 ID=Msa0012240-mRNA-1:cds;Parent=Msa0012240-mRNA-1
chr1_1 CDS 18436208 18436316 18436208 ID=Msa0012240-mRNA-1:cds;Parent=Msa0012240-mRNA-1
chr1_1 three_prime_UTR 18436317 18436755 18436317 ID=Msa0012240-mRNA-1:three_prime_utr;Parent=Msa0012240-mRNA-1
Gene Sequence

>Msa0012240

ATGTTTCAGTTTTCTGCGGAAGATCGCCTTGCTGCCGTATTTGTAGTAGGATTCACATTAGCAGAGGATGGTGAAAGTGATGAACAAGTGGTTCTTGTTAGCCAAAGTGGTACAGTCAACAGGATTAAAGTTCGGGATATTTCAATTCAATCCCGATTTGCTAGGGGAGTTATTTTGATGCGACTTGATCATGCTGGAAAGATTCAGACTGCTTCCTTAATCTCAGCAACGGAGTGCGAGCCTGAAGAAGAACTTGATATCGCCCAAGGCTAG
Protein sequence

>Msa0012240

MFQFSAEDRLAAVFVVGFTLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRLDHAGKIQTASLISATECEPEEELDIAQG*