AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1386780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386780 MtrunA17_Chr4g0060741 89.119 193 13 2 1 185 1 193 2.13e-117 333
Msa1386780 MtrunA17_Chr3g0092161 52.736 201 77 4 1 185 1 199 8.22e-61 190
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386780 AT5G62440.1 63.780 127 37 1 51 177 53 170 1.28e-52 168

Find 52 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATCAGGTCCTGTGAAAT+TGG 0.210319 tig0020872:+1746 Msa1386780:CDS
GCAAGTGTTTCTTTCTCATT+AGG 0.216772 tig0020872:+3368 Msa1386780:CDS
ATGTCTACAGCGACGATTTC+TGG 0.267784 tig0020872:-1564 None:intergenic
CAAAACTTTCGGCTCTTCTT+TGG 0.271810 tig0020872:+1773 Msa1386780:CDS
TGTTTCACTTGCATTGCTTC+TGG 0.296516 tig0020872:-3451 None:intergenic
GCAAGAGATGACGACGAAAA+AGG 0.316205 tig0020872:+1663 Msa1386780:CDS
AACAGAGCATTGGGTGGTTC+TGG 0.319267 tig0020872:+3481 Msa1386780:CDS
ATCTCTTGCACGCTTCTGAT+TGG 0.341369 tig0020872:-1649 None:intergenic
CAAGTGTTTCTTTCTCATTA+GGG 0.357081 tig0020872:+3369 Msa1386780:CDS
CACTCACTGCACTCAATGTC+TGG 0.374977 tig0020872:-3569 None:intergenic
AAATTGGGTTACAAAACTTT+CGG 0.375837 tig0020872:+1762 Msa1386780:CDS
ATGTAGGATGCTTGCGAACT+TGG 0.378769 tig0020872:-3339 None:intergenic
GAATATGATCCACACATTTA+CGG 0.416271 tig0020872:-3420 None:intergenic
CATCGAGGTGCTGGTGGAAG+AGG 0.436207 tig0020872:+3514 Msa1386780:CDS
CCATCAGGTCCTGTGAAATT+GGG 0.448379 tig0020872:+1747 Msa1386780:CDS
CACTTGCATTGCTTCTGGCA+AGG 0.456631 tig0020872:-3446 None:intergenic
TGAGTGATTACTGCTGATCT+TGG 0.461222 tig0020872:+3586 Msa1386780:three_prime_UTR
CATGATGCAAACAGAGCATT+GGG 0.462963 tig0020872:+3472 Msa1386780:CDS
ACCTTGTTAACATTAAGATT+AGG 0.475911 tig0020872:-1837 None:intergenic
ACTTGCATTGCTTCTGGCAA+GGG 0.488485 tig0020872:-3445 None:intergenic
ACAGCGACGATTTCTGGTTC+CGG 0.491379 tig0020872:-1558 None:intergenic
GAAGAAGAGATGAAACCATC+AGG 0.500830 tig0020872:+1732 Msa1386780:CDS
CCCAATTTCACAGGACCTGA+TGG 0.504047 tig0020872:-1747 None:intergenic
AAAAGAAAGCATCGAGGTGC+TGG 0.509151 tig0020872:+3505 Msa1386780:CDS
TTACTAGAATTGCTTATGAA+AGG 0.517998 tig0020872:+3271 Msa1386780:CDS
AATGACGGAAACCGCTGCAC+CGG 0.523742 tig0020872:+1539 Msa1386780:exon
AGGTGTTTCCAAGAAGCAAA+AGG 0.542393 tig0020872:+1683 Msa1386780:CDS
ATACTACATCTACTAGTAGC+AGG 0.543266 tig0020872:-3668 None:intergenic
AAGTTCGCAAGCATCCTACA+TGG 0.544290 tig0020872:+3341 Msa1386780:CDS
ACATGATGCAAACAGAGCAT+TGG 0.559557 tig0020872:+3471 Msa1386780:CDS
CGAGGTGCTGGTGGAAGAGG+AGG 0.573526 tig0020872:+3517 Msa1386780:CDS
AACAAAATACAGAAAAGTCT+AGG 0.576361 tig0020872:-3830 None:intergenic
TCCTAATCTTAATGTTAACA+AGG 0.576772 tig0020872:+1836 Msa1386780:CDS
AGGAGGTACACATGGACGTG+GGG 0.584945 tig0020872:+3534 Msa1386780:CDS
TATTGAAAACGCTGAACTCG+CGG 0.587289 tig0020872:+1590 Msa1386780:CDS
GTGTTTCTTTCTCATTAGGG+AGG 0.599803 tig0020872:+3372 Msa1386780:CDS
GGTGGAAGCAGAACTGAAAG+AGG 0.600841 tig0020872:+1704 Msa1386780:CDS
GAGGAGGTACACATGGACGT+GGG 0.602359 tig0020872:+3533 Msa1386780:CDS
GATTTCTGGTTCCGGTGCAG+CGG 0.603810 tig0020872:-1550 None:intergenic
AGAAATCGTCGCTGTAGACA+TGG 0.605806 tig0020872:+1566 Msa1386780:CDS
TTCGAATGTGAGAGAGACTG+AGG 0.608296 tig0020872:-1512 None:intergenic
CAGGAAACATGAAACAAGCT+CGG 0.613319 tig0020872:-3649 None:intergenic
AGAAAGCATCGAGGTGCTGG+TGG 0.622028 tig0020872:+3508 Msa1386780:CDS
AGAGGAGGTACACATGGACG+TGG 0.625090 tig0020872:+3532 Msa1386780:CDS
GGAGGTACACATGGACGTGG+GGG 0.649144 tig0020872:+3535 Msa1386780:CDS
TGTTTCCAAGAAGCAAAAGG+TGG 0.653047 tig0020872:+1686 Msa1386780:CDS
TCGAATGTGAGAGAGACTGA+GGG 0.662790 tig0020872:-1511 None:intergenic
GGTGGAAGAGGAGGTACACA+TGG 0.663515 tig0020872:+3526 Msa1386780:CDS
GATGCAAACAGAGCATTGGG+TGG 0.682793 tig0020872:+3475 Msa1386780:CDS
TGAAAACGCTGAACTCGCGG+AGG 0.694646 tig0020872:+1593 Msa1386780:CDS
TGAACTCGCGGAGGTTAACG+CGG 0.696148 tig0020872:+1602 Msa1386780:CDS
TCTGGTAAAAGAAAGCATCG+AGG 0.799067 tig0020872:+3499 Msa1386780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAGAATATCTTATTA+CGG + tig0020872:1990-2009 Msa1386780:intron 10.0%
!! AAATCTCAATTTACAAATTA+GGG - tig0020872:3103-3122 None:intergenic 15.0%
!! GTTAGTAACAAAAAAATATT+AGG - tig0020872:3205-3224 None:intergenic 15.0%
!!! AATATTTTTTTGTTACTAAC+TGG + tig0020872:3205-3224 Msa1386780:intron 15.0%
!!! ATATTTTTTTGTTACTAACT+GGG + tig0020872:3206-3225 Msa1386780:intron 15.0%
!!! TAATTCTTTTTGTAAAAAAG+AGG + tig0020872:3906-3925 Msa1386780:three_prime_UTR 15.0%
!!! TTTGTATTGATTTTGGTTAT+GGG + tig0020872:2022-2041 Msa1386780:intron 20.0%
!! CAACTAAAAAATTGTATTGA+AGG + tig0020872:2616-2635 Msa1386780:intron 20.0%
!! TAAAAAATTGTATTGAAGGA+GGG + tig0020872:2620-2639 Msa1386780:intron 20.0%
!! GAAACACTAAAAACAAAATA+AGG - tig0020872:2854-2873 None:intergenic 20.0%
!! GAAATCTCAATTTACAAATT+AGG - tig0020872:3104-3123 None:intergenic 20.0%
!!! TTTGACTTTTTTATTTCATG+TGG + tig0020872:3706-3725 Msa1386780:three_prime_UTR 20.0%
!!! TCTATTTTGTATTATCACAA+CGG + tig0020872:3937-3956 Msa1386780:three_prime_UTR 20.0%
! AAATTGGGTTACAAAACTTT+CGG + tig0020872:1762-1781 Msa1386780:CDS 25.0%
! TCCTAATCTTAATGTTAACA+AGG + tig0020872:1836-1855 Msa1386780:CDS 25.0%
! ACCTTGTTAACATTAAGATT+AGG - tig0020872:1840-1859 None:intergenic 25.0%
! ACATCAAAATGTCAAATCAA+GGG - tig0020872:1904-1923 None:intergenic 25.0%
! CCAAAATCAATACAAAGTAA+GGG - tig0020872:2018-2037 None:intergenic 25.0%
! ACCAAAATCAATACAAAGTA+AGG - tig0020872:2019-2038 None:intergenic 25.0%
!!! CTTTGTATTGATTTTGGTTA+TGG + tig0020872:2021-2040 Msa1386780:intron 25.0%
!!! TTTAGTAGTGTTGATGTAAA+GGG + tig0020872:2155-2174 Msa1386780:intron 25.0%
! ATAATGTTACTGATCTTTCA+AGG + tig0020872:2210-2229 Msa1386780:intron 25.0%
!! GTTTTGTACAATGAAGAAAA+AGG - tig0020872:2581-2600 None:intergenic 25.0%
!!! TTTTTTAGTTGCTTCAAATG+AGG - tig0020872:2607-2626 None:intergenic 25.0%
! CTAAAAAATTGTATTGAAGG+AGG + tig0020872:2619-2638 Msa1386780:intron 25.0%
! TTACTAGAATTGCTTATGAA+AGG + tig0020872:3271-3290 Msa1386780:CDS 25.0%
!!! ATAATTTTAGCAAAGGATCA+GGG - tig0020872:3743-3762 None:intergenic 25.0%
!!! TGAAGACATAATTTTAGCAA+AGG - tig0020872:3750-3769 None:intergenic 25.0%
! AACAAAATACAGAAAAGTCT+AGG - tig0020872:3833-3852 None:intergenic 25.0%
TCACATTCGAACAAAAATGA+CGG + tig0020872:1524-1543 Msa1386780:exon 30.0%
CACATCAAAATGTCAAATCA+AGG - tig0020872:1905-1924 None:intergenic 30.0%
!!! CCCTTACTTTGTATTGATTT+TGG + tig0020872:2015-2034 Msa1386780:intron 30.0%
!! CTTTAGTAGTGTTGATGTAA+AGG + tig0020872:2154-2173 Msa1386780:intron 30.0%
!! TTAGTAGTGTTGATGTAAAG+GGG + tig0020872:2156-2175 Msa1386780:intron 30.0%
TTGCATATTTGTGAATTGGA+TGG + tig0020872:2179-2198 Msa1386780:intron 30.0%
TGCATATTTGTGAATTGGAT+GGG + tig0020872:2180-2199 Msa1386780:intron 30.0%
!!! TTTTTTGTGATTGCCTTGAT+TGG + tig0020872:2741-2760 Msa1386780:intron 30.0%
! TTTTTGTGATTGCCTTGATT+GGG + tig0020872:2742-2761 Msa1386780:intron 30.0%
CTTTGTAATTTACCCAATCA+AGG - tig0020872:2757-2776 None:intergenic 30.0%
ATTACAAAGCCTAAAATGAG+AGG + tig0020872:2768-2787 Msa1386780:intron 30.0%
TTTAGTGTTTCCATGAATTG+AGG + tig0020872:2863-2882 Msa1386780:intron 30.0%
TTAGTGTTTCCATGAATTGA+GGG + tig0020872:2864-2883 Msa1386780:intron 30.0%
AGAGAATTTGAATATTCCAC+AGG + tig0020872:2978-2997 Msa1386780:intron 30.0%
GAGAATTTGAATATTCCACA+GGG + tig0020872:2979-2998 Msa1386780:intron 30.0%
CACTTATATATCTACATGTC+AGG + tig0020872:3047-3066 Msa1386780:intron 30.0%
!! TGACTTTTGGTTGTTTTATG+TGG + tig0020872:3230-3249 Msa1386780:intron 30.0%
! TTTCCACCAATCTTTTTATC+AGG - tig0020872:3307-3326 None:intergenic 30.0%
CAAGTGTTTCTTTCTCATTA+GGG + tig0020872:3369-3388 Msa1386780:CDS 30.0%
GAATATGATCCACACATTTA+CGG - tig0020872:3423-3442 None:intergenic 30.0%
!! CATAATTTTAGCAAAGGATC+AGG - tig0020872:3744-3763 None:intergenic 30.0%
! GTTTTGTAACCCAATTTCAC+AGG - tig0020872:1759-1778 None:intergenic 35.0%
! TCAACAGTTTTCTTCATGCT+TGG + tig0020872:1811-1830 Msa1386780:CDS 35.0%
! CAACAGTTTTCTTCATGCTT+GGG + tig0020872:1812-1831 Msa1386780:CDS 35.0%
! AACAGTTTTCTTCATGCTTG+GGG + tig0020872:1813-1832 Msa1386780:CDS 35.0%
ACTCGCAATCAAAGTCTAAA+AGG - tig0020872:2302-2321 None:intergenic 35.0%
TTAGACTTTGATTGCGAGTT+TGG + tig0020872:2303-2322 Msa1386780:intron 35.0%
AAACTCACAAACAAAGCCTT+GGG - tig0020872:2478-2497 None:intergenic 35.0%
ATGGAAGAAATAGAGGAGAT+TGG + tig0020872:2534-2553 Msa1386780:intron 35.0%
TGGAAGAAATAGAGGAGATT+GGG + tig0020872:2535-2554 Msa1386780:intron 35.0%
! TAAAATGAGAGGAAGCACAT+GGG + tig0020872:2779-2798 Msa1386780:intron 35.0%
! TTTCCATGAATTGAGGGTTT+TGG + tig0020872:2870-2889 Msa1386780:intron 35.0%
ATTAATCCAACATCTGACCT+TGG + tig0020872:2932-2951 Msa1386780:intron 35.0%
ATCTACATGTCAGGATTGAA+CGG + tig0020872:3056-3075 Msa1386780:intron 35.0%
! TTACTAACTGGGATGACTTT+TGG + tig0020872:3217-3236 Msa1386780:intron 35.0%
!! AAACACTTGCTTTTCCATGT+AGG - tig0020872:3358-3377 None:intergenic 35.0%
GCAAGTGTTTCTTTCTCATT+AGG + tig0020872:3368-3387 Msa1386780:CDS 35.0%
!!! TTTTAGCTTCCGTAAATGTG+TGG + tig0020872:3411-3430 Msa1386780:CDS 35.0%
ATACTACATCTACTAGTAGC+AGG - tig0020872:3671-3690 None:intergenic 35.0%
TATTGAAAACGCTGAACTCG+CGG + tig0020872:1590-1609 Msa1386780:CDS 40.0%
AGGTGTTTCCAAGAAGCAAA+AGG + tig0020872:1683-1702 Msa1386780:CDS 40.0%
TGTTTCCAAGAAGCAAAAGG+TGG + tig0020872:1686-1705 Msa1386780:CDS 40.0%
GAAGAAGAGATGAAACCATC+AGG + tig0020872:1732-1751 Msa1386780:CDS 40.0%
CAAAACTTTCGGCTCTTCTT+TGG + tig0020872:1773-1792 Msa1386780:CDS 40.0%
TTTCCGAACAAAACAGAGCA+CGG - tig0020872:2060-2079 None:intergenic 40.0%
GAGATTCAGAGTTCAACTCT+TGG + tig0020872:2121-2140 Msa1386780:intron 40.0%
GGGGTTGCATATTTGTGAAT+TGG + tig0020872:2175-2194 Msa1386780:intron 40.0%
!!! TTCAAGGCTGTGTTTTGAAG+AGG + tig0020872:2226-2245 Msa1386780:intron 40.0%
ACTTTGATTGCGAGTTTGGA+GGG + tig0020872:2307-2326 Msa1386780:intron 40.0%
!! AGAATCCCTCACTTTTATCG+GGG - tig0020872:2396-2415 None:intergenic 40.0%
!! GAGAATCCCTCACTTTTATC+GGG - tig0020872:2397-2416 None:intergenic 40.0%
!! GGAGAATCCCTCACTTTTAT+CGG - tig0020872:2398-2417 None:intergenic 40.0%
CAAACTCACAAACAAAGCCT+TGG - tig0020872:2479-2498 None:intergenic 40.0%
!! CAAGGCTTTGTTTGTGAGTT+TGG + tig0020872:2477-2496 Msa1386780:intron 40.0%
!! GCTTTGTTTGTGAGTTTGGA+GGG + tig0020872:2481-2500 Msa1386780:intron 40.0%
TTTGTGAGTTTGGAGGGTAA+GGG + tig0020872:2487-2506 Msa1386780:intron 40.0%
TTTGAAAAGGAAGGGGCAAA+TGG + tig0020872:2515-2534 Msa1386780:intron 40.0%
AAGAAATAGAGGAGATTGGG+AGG + tig0020872:2538-2557 Msa1386780:intron 40.0%
AGAAATAGAGGAGATTGGGA+GGG + tig0020872:2539-2558 Msa1386780:intron 40.0%
!! GTATTGAAGGAGGGTTTTGA+CGG + tig0020872:2629-2648 Msa1386780:intron 40.0%
!! TATTGAAGGAGGGTTTTGAC+GGG + tig0020872:2630-2649 Msa1386780:intron 40.0%
! CATGTGCTTCCTCTCATTTT+AGG - tig0020872:2780-2799 None:intergenic 40.0%
! CTAAAATGAGAGGAAGCACA+TGG + tig0020872:2778-2797 Msa1386780:intron 40.0%
AGTCCAAAACCCTCAATTCA+TGG - tig0020872:2876-2895 None:intergenic 40.0%
TCTACATGTCAGGATTGAAC+GGG + tig0020872:3057-3076 Msa1386780:intron 40.0%
! CCAATCTTTTTATCAGGCTC+TGG - tig0020872:3301-3320 None:intergenic 40.0%
CCAGAGCCTGATAAAAAGAT+TGG + tig0020872:3298-3317 Msa1386780:CDS 40.0%
GAGCCTGATAAAAAGATTGG+TGG + tig0020872:3301-3320 Msa1386780:CDS 40.0%
GTGTTTCTTTCTCATTAGGG+AGG + tig0020872:3372-3391 Msa1386780:CDS 40.0%
TGTTTCACTTGCATTGCTTC+TGG - tig0020872:3454-3473 None:intergenic 40.0%
ACATGATGCAAACAGAGCAT+TGG + tig0020872:3471-3490 Msa1386780:CDS 40.0%
! CATGATGCAAACAGAGCATT+GGG + tig0020872:3472-3491 Msa1386780:CDS 40.0%
!! TCTGGTAAAAGAAAGCATCG+AGG + tig0020872:3499-3518 Msa1386780:CDS 40.0%
TGAGTGATTACTGCTGATCT+TGG + tig0020872:3586-3605 Msa1386780:three_prime_UTR 40.0%
CAGGAAACATGAAACAAGCT+CGG - tig0020872:3652-3671 None:intergenic 40.0%
TCGAATGTGAGAGAGACTGA+GGG - tig0020872:1514-1533 None:intergenic 45.0%
TTCGAATGTGAGAGAGACTG+AGG - tig0020872:1515-1534 None:intergenic 45.0%
ATGTCTACAGCGACGATTTC+TGG - tig0020872:1567-1586 None:intergenic 45.0%
AGAAATCGTCGCTGTAGACA+TGG + tig0020872:1566-1585 Msa1386780:CDS 45.0%
ATCTCTTGCACGCTTCTGAT+TGG - tig0020872:1652-1671 None:intergenic 45.0%
GCAAGAGATGACGACGAAAA+AGG + tig0020872:1663-1682 Msa1386780:CDS 45.0%
! TGCTTCCACCTTTTGCTTCT+TGG - tig0020872:1694-1713 None:intergenic 45.0%
ACCATCAGGTCCTGTGAAAT+TGG + tig0020872:1746-1765 Msa1386780:CDS 45.0%
CCATCAGGTCCTGTGAAATT+GGG + tig0020872:1747-1766 Msa1386780:CDS 45.0%
!! ACTCCGTGCTCTGTTTTGTT+CGG + tig0020872:2054-2073 Msa1386780:intron 45.0%
!!! AGGCTGTGTTTTGAAGAGGA+AGG + tig0020872:2230-2249 Msa1386780:intron 45.0%
!!! GGCTGTGTTTTGAAGAGGAA+GGG + tig0020872:2231-2250 Msa1386780:intron 45.0%
!!! GCTGTGTTTTGAAGAGGAAG+GGG + tig0020872:2232-2251 Msa1386780:intron 45.0%
!!! CTGTGTTTTGAAGAGGAAGG+GGG + tig0020872:2233-2252 Msa1386780:intron 45.0%
!! TTTTGAAGAGGAAGGGGGTT+AGG + tig0020872:2238-2257 Msa1386780:intron 45.0%
GACTTTGATTGCGAGTTTGG+AGG + tig0020872:2306-2325 Msa1386780:intron 45.0%
!! AAAGCGAGATGAGGGCATTA+AGG + tig0020872:2330-2349 Msa1386780:intron 45.0%
!! AAGCGAGATGAGGGCATTAA+GGG + tig0020872:2331-2350 Msa1386780:intron 45.0%
!! GATGAGGGCATTAAGGGTAA+AGG + tig0020872:2337-2356 Msa1386780:intron 45.0%
GGGCATTAAGGGTAAAGGAT+AGG + tig0020872:2342-2361 Msa1386780:intron 45.0%
AGACTCCCCGATAAAAGTGA+GGG + tig0020872:2388-2407 Msa1386780:intron 45.0%
AAGGGGCGAAAAGGAAACAT+AGG - tig0020872:2419-2438 None:intergenic 45.0%
CAAACAAAGCCTTGGGAGTT+AGG - tig0020872:2471-2490 None:intergenic 45.0%
!! GGCTTTGTTTGTGAGTTTGG+AGG + tig0020872:2480-2499 Msa1386780:intron 45.0%
GTTTGTGAGTTTGGAGGGTA+AGG + tig0020872:2486-2505 Msa1386780:intron 45.0%
TTGTGAGTTTGGAGGGTAAG+GGG + tig0020872:2488-2507 Msa1386780:intron 45.0%
GGGGCAAATGGAAGAAATAG+AGG + tig0020872:2527-2546 Msa1386780:intron 45.0%
GAAATAGAGGAGATTGGGAG+GGG + tig0020872:2540-2559 Msa1386780:intron 45.0%
ATTCCACAGGGACTGTGATA+TGG + tig0020872:2991-3010 Msa1386780:intron 45.0%
AAACCATATCACAGTCCCTG+TGG - tig0020872:2997-3016 None:intergenic 45.0%
ATGTAGGATGCTTGCGAACT+TGG - tig0020872:3342-3361 None:intergenic 45.0%
AAGTTCGCAAGCATCCTACA+TGG + tig0020872:3341-3360 Msa1386780:CDS 45.0%
ACTTGCATTGCTTCTGGCAA+GGG - tig0020872:3448-3467 None:intergenic 45.0%
!! AAAAGAAAGCATCGAGGTGC+TGG + tig0020872:3505-3524 Msa1386780:CDS 45.0%
!! ACAGCGACGATTTCTGGTTC+CGG - tig0020872:1561-1580 None:intergenic 50.0%
GGTGGAAGCAGAACTGAAAG+AGG + tig0020872:1704-1723 Msa1386780:CDS 50.0%
CCCAATTTCACAGGACCTGA+TGG - tig0020872:1750-1769 None:intergenic 50.0%
TTTGGAGGGAAAGCGAGATG+AGG + tig0020872:2321-2340 Msa1386780:intron 50.0%
TTGGAGGGAAAGCGAGATGA+GGG + tig0020872:2322-2341 Msa1386780:intron 50.0%
GAGACTCCCCGATAAAAGTG+AGG + tig0020872:2387-2406 Msa1386780:intron 50.0%
TTTGGAGGAAAGGGGCGAAA+AGG - tig0020872:2428-2447 None:intergenic 50.0%
!! TGAGAGGGCTTTGGAGGAAA+GGG - tig0020872:2437-2456 None:intergenic 50.0%
!! ATGAGAGGGCTTTGGAGGAA+AGG - tig0020872:2438-2457 None:intergenic 50.0%
TAGGAGGGAAAGGGATGAGA+GGG - tig0020872:2452-2471 None:intergenic 50.0%
TTAGGAGGGAAAGGGATGAG+AGG - tig0020872:2453-2472 None:intergenic 50.0%
CTTGGGAGTTAGGAGGGAAA+GGG - tig0020872:2461-2480 None:intergenic 50.0%
CAAAGCCTTGGGAGTTAGGA+GGG - tig0020872:2467-2486 None:intergenic 50.0%
ACAAAGCCTTGGGAGTTAGG+AGG - tig0020872:2468-2487 None:intergenic 50.0%
TGTGAGTTTGGAGGGTAAGG+GGG + tig0020872:2489-2508 Msa1386780:intron 50.0%
! GGTAAGGGGGGACTTTGAAA+AGG + tig0020872:2502-2521 Msa1386780:intron 50.0%
! AGGGGGGACTTTGAAAAGGA+AGG + tig0020872:2506-2525 Msa1386780:intron 50.0%
! GGGGGGACTTTGAAAAGGAA+GGG + tig0020872:2507-2526 Msa1386780:intron 50.0%
! GGGGGACTTTGAAAAGGAAG+GGG + tig0020872:2508-2527 Msa1386780:intron 50.0%
!!! AGGAGGGTTTTGACGGGTTT+TGG + tig0020872:2636-2655 Msa1386780:intron 50.0%
!!! AGGGTTTTGACGGGTTTTGG+AGG + tig0020872:2639-2658 Msa1386780:intron 50.0%
!!! GGGTTTTGACGGGTTTTGGA+GGG + tig0020872:2640-2659 Msa1386780:intron 50.0%
TCCAACATCTGACCTTGGAC+TGG + tig0020872:2937-2956 Msa1386780:intron 50.0%
TCCAGTCCAAGGTCAGATGT+TGG - tig0020872:2941-2960 None:intergenic 50.0%
! TTGGACTGGATTGAGCTGCA+GGG + tig0020872:2951-2970 Msa1386780:intron 50.0%
CACTTGCATTGCTTCTGGCA+AGG - tig0020872:3449-3468 None:intergenic 50.0%
!! GATGCAAACAGAGCATTGGG+TGG + tig0020872:3475-3494 Msa1386780:CDS 50.0%
!! AACAGAGCATTGGGTGGTTC+TGG + tig0020872:3481-3500 Msa1386780:CDS 50.0%
CACTCACTGCACTCAATGTC+TGG - tig0020872:3572-3591 None:intergenic 50.0%
! AATGACGGAAACCGCTGCAC+CGG + tig0020872:1539-1558 Msa1386780:exon 55.0%
!! GATTTCTGGTTCCGGTGCAG+CGG - tig0020872:1553-1572 None:intergenic 55.0%
TGAAAACGCTGAACTCGCGG+AGG + tig0020872:1593-1612 Msa1386780:CDS 55.0%
TGAACTCGCGGAGGTTAACG+CGG + tig0020872:1602-1621 Msa1386780:CDS 55.0%
TGAAGAGGAAGGGGGTTAGG+AGG + tig0020872:2241-2260 Msa1386780:intron 55.0%
!! GAGAGGGCTTTGGAGGAAAG+GGG - tig0020872:2436-2455 None:intergenic 55.0%
! AAGGGATGAGAGGGCTTTGG+AGG - tig0020872:2443-2462 None:intergenic 55.0%
GGAAAGGGATGAGAGGGCTT+TGG - tig0020872:2446-2465 None:intergenic 55.0%
CCTTGGGAGTTAGGAGGGAA+AGG - tig0020872:2462-2481 None:intergenic 55.0%
CCTTTCCCTCCTAACTCCCA+AGG + tig0020872:2459-2478 Msa1386780:intron 55.0%
GTGAGTTTGGAGGGTAAGGG+GGG + tig0020872:2490-2509 Msa1386780:intron 55.0%
CTGCAGCTCAATCCAGTCCA+AGG - tig0020872:2952-2971 None:intergenic 55.0%
! CTTGGACTGGATTGAGCTGC+AGG + tig0020872:2950-2969 Msa1386780:intron 55.0%
!! AGAAAGCATCGAGGTGCTGG+TGG + tig0020872:3508-3527 Msa1386780:CDS 55.0%
! GGTGGAAGAGGAGGTACACA+TGG + tig0020872:3526-3545 Msa1386780:CDS 55.0%
! AGAGGAGGTACACATGGACG+TGG + tig0020872:3532-3551 Msa1386780:CDS 55.0%
! GAGGAGGTACACATGGACGT+GGG + tig0020872:3533-3552 Msa1386780:CDS 55.0%
! AGGAGGTACACATGGACGTG+GGG + tig0020872:3534-3553 Msa1386780:CDS 55.0%
TACACATGGACGTGGGGGAA+AGG + tig0020872:3540-3559 Msa1386780:CDS 55.0%
ACACATGGACGTGGGGGAAA+GGG + tig0020872:3541-3560 Msa1386780:CDS 55.0%
AGGAAGGGGGTTAGGAGGAC+AGG + tig0020872:2246-2265 Msa1386780:intron 60.0%
AAGGGGGTTAGGAGGACAGG+CGG + tig0020872:2249-2268 Msa1386780:intron 60.0%
!! CATCGAGGTGCTGGTGGAAG+AGG + tig0020872:3514-3533 Msa1386780:CDS 60.0%
! GGAGGTACACATGGACGTGG+GGG + tig0020872:3535-3554 Msa1386780:CDS 60.0%
!! CGAGGTGCTGGTGGAAGAGG+AGG + tig0020872:3517-3536 Msa1386780:CDS 65.0%
GAGGACAGGCGGCGAGCAGA+GGG + tig0020872:2260-2279 Msa1386780:intron 70.0%
GGAGGACAGGCGGCGAGCAG+AGG + tig0020872:2259-2278 Msa1386780:intron 75.0%
Chromosome Type Strat End Strand Name
tig0020872 gene 1505 3964 1505 ID=Msa1386780;Name=Msa1386780
tig0020872 mRNA 1505 3964 1505 ID=Msa1386780-mRNA-1;Parent=Msa1386780;Name=Msa1386780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=35|1|1|1|1|1|2|385|213
tig0020872 exon 1505 1857 1505 ID=Msa1386780-mRNA-1:exon:10347;Parent=Msa1386780-mRNA-1
tig0020872 exon 3256 3964 3256 ID=Msa1386780-mRNA-1:exon:10348;Parent=Msa1386780-mRNA-1
tig0020872 five_prime_UTR 1505 1539 1505 ID=Msa1386780-mRNA-1:five_prime_utr;Parent=Msa1386780-mRNA-1
tig0020872 CDS 1540 1857 1540 ID=Msa1386780-mRNA-1:cds;Parent=Msa1386780-mRNA-1
tig0020872 CDS 3256 3579 3256 ID=Msa1386780-mRNA-1:cds;Parent=Msa1386780-mRNA-1
tig0020872 three_prime_UTR 3580 3964 3580 ID=Msa1386780-mRNA-1:three_prime_utr;Parent=Msa1386780-mRNA-1
Gene Sequence

>Msa1386780

ATGACGGAAACCGCTGCACCGGAACCAGAAATCGTCGCTGTAGACATGGTTATTGAAAACGCTGAACTCGCGGAGGTTAACGCGGTCGATTCAGAAGCGAACGACGAGTCCAATCAGAAGCGTGCAAGAGATGACGACGAAAAAGGTGTTTCCAAGAAGCAAAAGGTGGAAGCAGAACTGAAAGAGGATGAAGAAGAAGAGATGAAACCATCAGGTCCTGTGAAATTGGGTTACAAAACTTTCGGCTCTTCTTTGGAGTTGTTCGATTATTTCAACAGTTTTCTTCATGCTTGGGGTCCTAATCTTAATGTTAACAAGTATGAACATGCAATGTTACTAGAATTGCTTATGAAAGGTCATCCAGAGCCTGATAAAAAGATTGGTGGAAAAATCTGTGCTTTCCAAGTTCGCAAGCATCCTACATGGAAAAGCAAGTGTTTCTTTCTCATTAGGGAGGATGAATCAGCTGATGATTTTAGCTTCCGTAAATGTGTGGATCATATTCTTCCCTTGCCAGAAGCAATGCAAGTGAAACATGATGCAAACAGAGCATTGGGTGGTTCTGGTAAAAGAAAGCATCGAGGTGCTGGTGGAAGAGGAGGTACACATGGACGTGGGGGAAAGGGAAAGTCCAGACATTGA

Protein sequence

>Msa1386780

MTETAAPEPEIVAVDMVIENAELAEVNAVDSEANDESNQKRARDDDEKGVSKKQKVEAELKEDEEEEMKPSGPVKLGYKTFGSSLELFDYFNSFLHAWGPNLNVNKYEHAMLLELLMKGHPEPDKKIGGKICAFQVRKHPTWKSKCFFLIREDESADDFSFRKCVDHILPLPEAMQVKHDANRALGGSGKRKHRGAGGRGGTHGRGGKGKSRH*