Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818980 | AES99695.1 | 98.574 | 561 | 8 | 0 | 1 | 561 | 1 | 561 | 0.0 | 1158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818980 | G7K7B5 | 98.574 | 561 | 8 | 0 | 1 | 561 | 1 | 561 | 0.0 | 1158 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012240 | Msa0818980 | -0.804758 | 1.852551e-49 | -8.615850e-47 |
| Msa0103000 | Msa0818980 | -0.801463 | 8.899546e-49 | -8.615850e-47 |
| Msa0654760 | Msa0818980 | 0.819613 | 1.059383e-52 | -8.615850e-47 |
| Msa0677290 | Msa0818980 | -0.812429 | 4.258586e-51 | -8.615850e-47 |
| Msa0709500 | Msa0818980 | -0.803198 | 3.908854e-49 | -8.615850e-47 |
| Msa0717920 | Msa0818980 | 0.807937 | 3.960722e-50 | -8.615850e-47 |
| Msa0734660 | Msa0818980 | -0.808013 | 3.814357e-50 | -8.615850e-47 |
| Msa0738630 | Msa0818980 | 0.996603 | 1.081837e-229 | -8.615850e-47 |
| Msa0776220 | Msa0818980 | -0.802811 | 4.699223e-49 | -8.615850e-47 |
| Msa0783760 | Msa0818980 | 0.996917 | 4.206177e-234 | -8.615850e-47 |
| Msa0790850 | Msa0818980 | -0.805347 | 1.395122e-49 | -8.615850e-47 |
| Msa0813320 | Msa0818980 | 0.817794 | 2.740623e-52 | -8.615850e-47 |
| Msa0813670 | Msa0818980 | -0.816995 | 4.148996e-52 | -8.615850e-47 |
| Msa0813720 | Msa0818980 | -0.801725 | 7.863871e-49 | -8.615850e-47 |
| Msa0818980 | Msa0819030 | 0.994756 | 6.293157e-210 | -8.615850e-47 |
| Msa0818980 | Msa0836660 | 0.815728 | 7.968912e-52 | -8.615850e-47 |
| Msa0818980 | Msa0854120 | -0.808497 | 3.008024e-50 | -8.615850e-47 |
| Msa0818980 | Msa0867050 | 0.807592 | 4.689349e-50 | -8.615850e-47 |
| Msa0818980 | Msa0902760 | -0.825302 | 5.047898e-54 | -8.615850e-47 |
| Msa0818980 | Msa0967650 | 0.823475 | 1.358135e-53 | -8.615850e-47 |
| Msa0818980 | Msa1013400 | -0.836224 | 1.060614e-56 | -8.615850e-47 |
| Msa0818980 | Msa1014500 | -0.808751 | 2.655193e-50 | -8.615850e-47 |
| Msa0818980 | Msa1040400 | -0.821091 | 4.855498e-53 | -8.615850e-47 |
| Msa0818980 | Msa1066490 | -0.807782 | 4.271972e-50 | -8.615850e-47 |
| Msa0818980 | Msa1081150 | -0.813412 | 2.592847e-51 | -8.615850e-47 |
| Msa0818980 | Msa1093530 | -0.824383 | 8.317137e-54 | -8.615850e-47 |
| Msa0818980 | Msa1104140 | -0.809459 | 1.872372e-50 | -8.615850e-47 |
| Msa0818980 | Msa1125760 | -0.809834 | 1.555220e-50 | -8.615850e-47 |
| Msa0818980 | Msa1126510 | -0.818363 | 2.038276e-52 | -8.615850e-47 |
| Msa0818980 | Msa1166860 | -0.826810 | 2.211059e-54 | -8.615850e-47 |
| Msa0818980 | Msa1171360 | -0.804067 | 2.580775e-49 | -8.615850e-47 |
| Msa0818980 | Msa1181850 | -0.822313 | 2.532143e-53 | -8.615850e-47 |
| Msa0818980 | Msa1181860 | -0.817194 | 3.742805e-52 | -8.615850e-47 |
| Msa0818980 | Msa1187840 | -0.800098 | 1.690328e-48 | -8.615850e-47 |
| Msa0818980 | Msa1193070 | -0.807412 | 5.118017e-50 | -8.615850e-47 |
| Msa0818980 | Msa1207270 | -0.815792 | 7.710266e-52 | -8.615850e-47 |
| Msa0818980 | Msa1211890 | -0.806437 | 8.231501e-50 | -8.615850e-47 |
| Msa0818980 | Msa1218600 | -0.814473 | 1.513268e-51 | -8.615850e-47 |
| Msa0818980 | Msa1257510 | -0.800028 | 1.746256e-48 | -8.615850e-47 |
| Msa0818980 | Msa1283170 | -0.809201 | 2.126954e-50 | -8.615850e-47 |
| Msa0818980 | Msa1392200 | -0.809071 | 2.267581e-50 | -8.615850e-47 |
| Msa0818980 | Msa1396750 | 0.824776 | 6.721412e-54 | -8.615850e-47 |
| Msa0818980 | Msa1410430 | 0.808199 | 3.483391e-50 | -8.615850e-47 |
| Msa0818980 | Msa1417870 | -0.808481 | 3.032698e-50 | -8.615850e-47 |
| Msa0818980 | Msa1448690 | -0.804141 | 2.490284e-49 | -8.615850e-47 |
| Msa0140570 | Msa0818980 | -0.809610 | 1.737790e-50 | -8.615850e-47 |
| Msa0173820 | Msa0818980 | -0.802901 | 4.502113e-49 | -8.615850e-47 |
| Msa0173830 | Msa0818980 | -0.814918 | 1.206320e-51 | -8.615850e-47 |
| Msa0193120 | Msa0818980 | -0.808627 | 2.822567e-50 | -8.615850e-47 |
| Msa0199880 | Msa0818980 | -0.800886 | 1.167929e-48 | -8.615850e-47 |
| Msa0238070 | Msa0818980 | 0.839383 | 1.637791e-57 | -8.615850e-47 |
| Msa0366890 | Msa0818980 | -0.805249 | 1.462388e-49 | -8.615850e-47 |
| Msa0376450 | Msa0818980 | 0.824680 | 7.079809e-54 | -8.615850e-47 |
| Msa0395960 | Msa0818980 | -0.814574 | 1.437173e-51 | -8.615850e-47 |
| Msa0430620 | Msa0818980 | -0.802998 | 4.298735e-49 | -8.615850e-47 |
| Msa0436050 | Msa0818980 | -0.809296 | 2.030112e-50 | -8.615850e-47 |
| Msa0465790 | Msa0818980 | -0.813357 | 2.667112e-51 | -8.615850e-47 |
| Msa0471440 | Msa0818980 | -0.820615 | 6.247315e-53 | -8.615850e-47 |
| Msa0471720 | Msa0818980 | 0.822058 | 2.902620e-53 | -8.615850e-47 |
| Msa0264570 | Msa0818980 | -0.812477 | 4.157264e-51 | -8.615850e-47 |
| Msa0268130 | Msa0818980 | -0.807087 | 5.997731e-50 | -8.615850e-47 |
| Msa0280610 | Msa0818980 | -0.819900 | 9.107947e-53 | -8.615850e-47 |
| Msa0298990 | Msa0818980 | -0.806043 | 9.961238e-50 | -8.615850e-47 |
| Msa0358170 | Msa0818980 | -0.813006 | 3.184353e-51 | -8.615850e-47 |
| Msa0483860 | Msa0818980 | -0.824521 | 7.716953e-54 | -8.615850e-47 |
| Msa0491020 | Msa0818980 | -0.808419 | 3.125397e-50 | -8.615850e-47 |
| Msa0497490 | Msa0818980 | -0.803130 | 4.036870e-49 | -8.615850e-47 |
| Msa0516510 | Msa0818980 | 0.822105 | 2.829415e-53 | -8.615850e-47 |
| Msa0561540 | Msa0818980 | 0.815081 | 1.109473e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818980 | MtrunA17_Chr5g0437931 | 98.417 | 379 | 6 | 0 | 1 | 379 | 1 | 379 | 0.0 | 781 |
| Msa0818980 | MtrunA17_Chr3g0114311 | 63.186 | 565 | 141 | 6 | 1 | 561 | 1 | 502 | 0.0 | 653 |
| Msa0818980 | MtrunA17_Chr3g0114321 | 66.667 | 483 | 133 | 5 | 1 | 479 | 1 | 459 | 0.0 | 632 |
| Msa0818980 | MtrunA17_Chr5g0437921 | 98.684 | 152 | 2 | 0 | 410 | 561 | 1 | 152 | 2.32e-106 | 315 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818980 | AT3G10980.1 | 59.298 | 570 | 206 | 10 | 5 | 560 | 6 | 563 | 0.0 | 631 |
| Msa0818980 | AT5G05350.1 | 56.929 | 534 | 199 | 7 | 30 | 560 | 20 | 525 | 0.0 | 598 |
Find 125 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTCTAGCAGTTTCTTTA+TGG | 0.127897 | 5_3:-55093945 | Msa0818980:CDS |
| ATCTTATGCGTTGCTGTTTC+AGG | 0.172175 | 5_3:-55095108 | Msa0818980:CDS |
| CGCATAAGATCCACGCAAAA+AGG | 0.191675 | 5_3:+55095121 | None:intergenic |
| CTAAGTTTGGCGATATCTTT+TGG | 0.228804 | 5_3:+55094910 | None:intergenic |
| CTAGGTAAAGATTATGATTC+TGG | 0.262677 | 5_3:-55094667 | Msa0818980:CDS |
| GCATTCCTTGCCGACTTCTT+TGG | 0.266606 | 5_3:+55095039 | None:intergenic |
| TTTCGGCAAGCCTGCGGTTT+CGG | 0.267613 | 5_3:-55094197 | Msa0818980:CDS |
| TTGAAGAAGTTGATCCTATT+AGG | 0.274814 | 5_3:+55095330 | None:intergenic |
| AATTATACCTCTTTCTCATT+TGG | 0.282202 | 5_3:+55094239 | None:intergenic |
| AGTGGCAAGACGCTTGAATT+TGG | 0.310045 | 5_3:+55095290 | None:intergenic |
| CACTTTGGCTATTCTGTTGT+TGG | 0.321220 | 5_3:-55094168 | Msa0818980:CDS |
| GCAGTACTCCTTTCTAAGTT+TGG | 0.322615 | 5_3:+55094897 | None:intergenic |
| TTGTGCATTTGGTTGGAATA+TGG | 0.330037 | 5_3:-55094446 | Msa0818980:CDS |
| CCTACTTATGACTTCTGTTT+CGG | 0.336304 | 5_3:-55094214 | Msa0818980:CDS |
| GTGGAGGAATACTTGACATT+TGG | 0.338866 | 5_3:-55094510 | Msa0818980:CDS |
| TCGAGAACTTGAAATATCTA+TGG | 0.347292 | 5_3:+55095413 | None:intergenic |
| AGGAGAACTTGTCCCAGATT+TGG | 0.348843 | 5_3:+55094015 | None:intergenic |
| GGTGTGTCATCAACCAAATC+TGG | 0.354088 | 5_3:-55094028 | Msa0818980:CDS |
| ATTGAGGAATGTAACAATAA+TGG | 0.360036 | 5_3:-55095459 | Msa0818980:CDS |
| CATTGAGTGCTATTCCTAAT+AGG | 0.364914 | 5_3:-55095344 | Msa0818980:CDS |
| ACTTCATAACATAATGGTTT+CGG | 0.365084 | 5_3:-55095505 | Msa0818980:exon |
| CTCTCAATATAACTCTTACT+TGG | 0.365662 | 5_3:-55096494 | Msa0818980:five_prime_UTR |
| ATGGTTTCGGTTGATAATAA+TGG | 0.365993 | 5_3:-55095492 | Msa0818980:CDS |
| ATCGGTGCACCTGCAATTGC+TGG | 0.371089 | 5_3:-55094712 | Msa0818980:CDS |
| CACTTTGTGGTCTAAACTTA+GGG | 0.372572 | 5_3:-55094789 | Msa0818980:CDS |
| GCACTTTGTGGTCTAAACTT+AGG | 0.372663 | 5_3:-55094790 | Msa0818980:CDS |
| AGGATCAACTTCTTCAAAAT+CGG | 0.383821 | 5_3:-55095324 | Msa0818980:CDS |
| AAGAAACTGCTAGAACTTAG+AGG | 0.389392 | 5_3:+55093950 | None:intergenic |
| TTTGCTCAATATGCACTTTG+TGG | 0.392887 | 5_3:-55094802 | Msa0818980:CDS |
| AGATGACAATAGAATGGATT+AGG | 0.399686 | 5_3:-55095161 | Msa0818980:CDS |
| CTTTGTATCACCGGCGGAGT+TGG | 0.401446 | 5_3:+55093842 | None:intergenic |
| GCTTAGACTTCATAACATAA+TGG | 0.404890 | 5_3:-55095511 | Msa0818980:exon |
| TGGAGGAATACTTGACATTT+GGG | 0.407333 | 5_3:-55094509 | Msa0818980:CDS |
| CTTGACGGTTTGAAAGTAGA+AGG | 0.422675 | 5_3:+55093974 | None:intergenic |
| TTTATCATCTACAATATGAT+AGG | 0.429440 | 5_3:+55094111 | None:intergenic |
| CAAAACAGAGAAACAAGAAA+TGG | 0.435202 | 5_3:+55096517 | None:intergenic |
| GAGCGCCCGGCCATCGGTGT+TGG | 0.439028 | 5_3:-55094754 | Msa0818980:CDS |
| GCCAAGATGAAAATCCAAAA+GGG | 0.440423 | 5_3:+55094361 | None:intergenic |
| ATATTGAGGATGACACTGTT+AGG | 0.445757 | 5_3:-55094330 | Msa0818980:CDS |
| CTTGCTCAAGAAATGCGAAC+GGG | 0.448066 | 5_3:-55094139 | Msa0818980:CDS |
| GTATATAGACCAGCAATTGC+AGG | 0.456063 | 5_3:+55094703 | None:intergenic |
| AGGCAATGTCTAGTAGGTGC+TGG | 0.460261 | 5_3:-55094310 | Msa0818980:CDS |
| CTCAGAAGAACAAGAAGAAA+AGG | 0.461285 | 5_3:+55096665 | None:intergenic |
| ACAAGATGGTAGAATAACTT+TGG | 0.464879 | 5_3:+55094952 | None:intergenic |
| AGAAAGGAGTACTGCAAGAA+TGG | 0.467535 | 5_3:-55094889 | Msa0818980:CDS |
| AATATGGAGAGACTTGGCTT+TGG | 0.469184 | 5_3:-55094430 | Msa0818980:CDS |
| CTTGGCTGCTGTTAATATTG+AGG | 0.476409 | 5_3:-55094344 | Msa0818980:CDS |
| CTAGAACTTAGAGGACTTGA+CGG | 0.477113 | 5_3:+55093959 | None:intergenic |
| ATCCTGTTCCTTGTCATGAC+TGG | 0.479597 | 5_3:-55095081 | Msa0818980:CDS |
| TGTATCACCGGCGGAGTTGG+TGG | 0.481477 | 5_3:+55093845 | None:intergenic |
| AATCTTTACCTAGAGGACTA+AGG | 0.482009 | 5_3:+55094677 | None:intergenic |
| TCGCGACGCAGAGGTGAAAT+CGG | 0.484106 | 5_3:+55094052 | None:intergenic |
| TCATGAATGGAAACACATAA+TGG | 0.490549 | 5_3:-55094854 | Msa0818980:CDS |
| TACCAGTCATGACAAGGAAC+AGG | 0.492780 | 5_3:+55095079 | None:intergenic |
| GAACTTATAAGCCTCATGAA+TGG | 0.495861 | 5_3:-55094867 | Msa0818980:CDS |
| CATATTCCAACACCGATGGC+CGG | 0.496400 | 5_3:+55094748 | None:intergenic |
| TGAAGAAGATGACAATAGAA+TGG | 0.501131 | 5_3:-55095167 | Msa0818980:CDS |
| AGATATCGCCAAACTTAGAA+AGG | 0.504835 | 5_3:-55094905 | Msa0818980:CDS |
| ACGGAAGATAGTGGACCATC+TGG | 0.504935 | 5_3:+55093911 | None:intergenic |
| AACAAAAGAAACGGAATGAA+AGG | 0.507231 | 5_3:+55096569 | None:intergenic |
| GGAGATTCTCTTTGTATCAC+CGG | 0.509159 | 5_3:+55093833 | None:intergenic |
| GGAGGATCCAAATGAGAAAG+AGG | 0.509367 | 5_3:-55094246 | Msa0818980:CDS |
| AGTATTCCTCCACTCCACTT+TGG | 0.512153 | 5_3:+55094520 | None:intergenic |
| ATATTCCAACACCGATGGCC+GGG | 0.512263 | 5_3:+55094749 | None:intergenic |
| AGCCAAGATGAAAATCCAAA+AGG | 0.513987 | 5_3:+55094360 | None:intergenic |
| TATACAATCCTTAGTCCTCT+AGG | 0.515282 | 5_3:-55094685 | Msa0818980:CDS |
| TCTGGGACAAGTTCTCCTCT+TGG | 0.516682 | 5_3:-55094010 | Msa0818980:CDS |
| ACTATGTAAAACAAAAGAAA+CGG | 0.528042 | 5_3:+55096560 | None:intergenic |
| GGAATAGCACTCAATGTGCT+CGG | 0.531235 | 5_3:+55095351 | None:intergenic |
| GGTTGGAATATGGAGAGACT+TGG | 0.540609 | 5_3:-55094436 | Msa0818980:CDS |
| CGGTTTCGGACTGCACACTT+TGG | 0.541886 | 5_3:-55094183 | Msa0818980:CDS |
| ATCTTGTACTTCTGTGCCGA+TGG | 0.543050 | 5_3:-55094936 | Msa0818980:CDS |
| CAAGCGTCTTGCCACTCAGA+TGG | 0.543275 | 5_3:-55095283 | Msa0818980:CDS |
| TTATGCGTTGCTGTTTCAGG+TGG | 0.547321 | 5_3:-55095105 | Msa0818980:CDS |
| GGCAATGTCTAGTAGGTGCT+GGG | 0.548348 | 5_3:-55094309 | Msa0818980:CDS |
| ATAATGGTAGTGGTAATTCT+CGG | 0.552969 | 5_3:-55094838 | Msa0818980:CDS |
| TAATGGTAAAGATGAAATTG+AGG | 0.553613 | 5_3:-55095475 | Msa0818980:CDS |
| ATTATGTGTTTCCATTCATG+AGG | 0.556074 | 5_3:+55094856 | None:intergenic |
| GAATAGCACTCAATGTGCTC+GGG | 0.557900 | 5_3:+55095352 | None:intergenic |
| CCGAAACAGAAGTCATAAGT+AGG | 0.558846 | 5_3:+55094214 | None:intergenic |
| TTCAAGTTCTCGAAGAGCAA+TGG | 0.559290 | 5_3:-55095403 | Msa0818980:CDS |
| AAGGCACAGATTGTGAAGCC+TGG | 0.561142 | 5_3:+55095259 | None:intergenic |
| GGAATGAAAGGAAACAAGAA+TGG | 0.566302 | 5_3:+55096581 | None:intergenic |
| AGATCTGAGCGCCCGGCCAT+CGG | 0.567721 | 5_3:-55094760 | Msa0818980:CDS |
| ATGGAAACACATAATGGTAG+TGG | 0.568927 | 5_3:-55094848 | Msa0818980:CDS |
| AATTGTATTTGATGAGTGGA+TGG | 0.570063 | 5_3:+55096723 | None:intergenic |
| AGAAGTCGGCAAGGAATGCA+TGG | 0.573813 | 5_3:-55095035 | Msa0818980:CDS |
| CTTCTGTTTCGGCAAGCCTG+CGG | 0.574737 | 5_3:-55094203 | Msa0818980:CDS |
| GTGTGTCATCAACCAAATCT+GGG | 0.575863 | 5_3:-55094027 | Msa0818980:CDS |
| ATTTCACCTCTGCGTCGCGA+AGG | 0.576158 | 5_3:-55094049 | Msa0818980:CDS |
| AAGCTATGTGAACTCGGAGA+AGG | 0.576858 | 5_3:+55095240 | None:intergenic |
| TTCTGTGATTCCAAAGAAGT+CGG | 0.578176 | 5_3:-55095049 | Msa0818980:CDS |
| TCTCTTAAGCTATGTGAACT+CGG | 0.578236 | 5_3:+55095234 | None:intergenic |
| ATGGAATATCATAGTCCAGA+TGG | 0.578861 | 5_3:-55093926 | Msa0818980:CDS |
| GTATAAAAGATCTGAGCGCC+CGG | 0.584269 | 5_3:-55094767 | Msa0818980:CDS |
| TGGATCGGACGAAGAATCAC+AGG | 0.586235 | 5_3:-55094647 | Msa0818980:CDS |
| ACTGTTAGGCAATGTCTAGT+AGG | 0.586758 | 5_3:-55094316 | Msa0818980:CDS |
| CATACAGAAAAGCATAAAAG+TGG | 0.591275 | 5_3:+55094387 | None:intergenic |
| TTGCTCAAGAAATGCGAACG+GGG | 0.591460 | 5_3:-55094138 | Msa0818980:CDS |
| TCTTGCCACTCAGATGGACC+AGG | 0.594178 | 5_3:-55095277 | Msa0818980:CDS |
| GCAGAGGTGAAATCGGCGGT+TGG | 0.594442 | 5_3:+55094059 | None:intergenic |
| AATGATTCCACCAACTCCGC+CGG | 0.599929 | 5_3:-55093852 | Msa0818980:CDS |
| GTGCTCGGGAACTTTCTACC+AGG | 0.603559 | 5_3:+55095366 | None:intergenic |
| TCTTGCTCAAGAAATGCGAA+CGG | 0.603658 | 5_3:-55094140 | Msa0818980:CDS |
| TAAAGATTATGATTCTGGAT+CGG | 0.607721 | 5_3:-55094662 | Msa0818980:CDS |
| CCAAGATGAAAATCCAAAAG+GGG | 0.608853 | 5_3:+55094362 | None:intergenic |
| TGCTCAAGAAATGCGAACGG+GGG | 0.610733 | 5_3:-55094137 | Msa0818980:CDS |
| GATTAGGAACCCGATGAACA+TGG | 0.611445 | 5_3:-55095145 | Msa0818980:CDS |
| TGAGACTGAAATCATTTGAG+AGG | 0.616878 | 5_3:-55094591 | Msa0818980:CDS |
| CAGTCGAAAATAGACCAAAG+TGG | 0.632679 | 5_3:-55094534 | Msa0818980:CDS |
| AATAGACCAAAGTGGAGTGG+AGG | 0.635594 | 5_3:-55094526 | Msa0818980:CDS |
| ATGGTGACAGATGAAAATCC+TGG | 0.643050 | 5_3:-55095384 | Msa0818980:CDS |
| ATCGGCACAGAAGTACAAGA+TGG | 0.645219 | 5_3:+55094938 | None:intergenic |
| GACACACCTTCGCGACGCAG+AGG | 0.651096 | 5_3:+55094043 | None:intergenic |
| TGATTCCAAAGAAGTCGGCA+AGG | 0.653679 | 5_3:-55095044 | Msa0818980:CDS |
| AGTGTGCAGTCCGAAACCGC+AGG | 0.654614 | 5_3:+55094187 | None:intergenic |
| TCAACATACCAGTCATGACA+AGG | 0.654796 | 5_3:+55095073 | None:intergenic |
| GATTCTCTTTGTATCACCGG+CGG | 0.656253 | 5_3:+55093836 | None:intergenic |
| GAAAATAGACCAAAGTGGAG+TGG | 0.658100 | 5_3:-55094529 | Msa0818980:CDS |
| TATACATATTCCAACACCGA+TGG | 0.667440 | 5_3:+55094744 | None:intergenic |
| GGAGACGAGTTGACACCAAG+AGG | 0.669536 | 5_3:+55093995 | None:intergenic |
| GAATCATAATCTTTACCTAG+AGG | 0.677371 | 5_3:+55094670 | None:intergenic |
| CAAGATGAAAATCCAAAAGG+GGG | 0.678756 | 5_3:+55094363 | None:intergenic |
| CGACGCAGAGGTGAAATCGG+CGG | 0.690132 | 5_3:+55094055 | None:intergenic |
| TGAAGCCTGGTCCATCTGAG+TGG | 0.740360 | 5_3:+55095272 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAGATCTTTTTTTTTTT+TGG | - | chr5_3:55094345-55094364 | Msa0818980:CDS | 10.0% |
| !!! | TTAAGATCTTTTTTTTTTTT+GGG | - | chr5_3:55094346-55094365 | Msa0818980:CDS | 10.0% |
| !! | ATGAAAAAATCAAAAATTGA+AGG | + | chr5_3:55094156-55094175 | None:intergenic | 15.0% |
| !!! | AATTTTTGATTTTTTCATCT+GGG | - | chr5_3:55094158-55094177 | Msa0818980:CDS | 15.0% |
| !!! | TATGTTGCTATTATTAAAAT+TGG | - | chr5_3:55094244-55094263 | Msa0818980:CDS | 15.0% |
| !! | TTTATTAAGATCTATTTACT+AGG | - | chr5_3:55094449-55094468 | Msa0818980:CDS | 15.0% |
| !! | TATAACAAAAACTATTAAGA+AGG | - | chr5_3:55094755-55094774 | Msa0818980:CDS | 15.0% |
| !! | AAAAAATTGTATTTGATGAG+TGG | + | chr5_3:55093839-55093858 | None:intergenic | 20.0% |
| !! | ACTATGTAAAACAAAAGAAA+CGG | + | chr5_3:55093998-55094017 | None:intergenic | 20.0% |
| !!! | CAATTTTTGATTTTTTCATC+TGG | - | chr5_3:55094157-55094176 | Msa0818980:CDS | 20.0% |
| !! | TGCTATTATTAAAATTGGAT+TGG | - | chr5_3:55094249-55094268 | Msa0818980:CDS | 20.0% |
| !!! | ATTAAAATTGGATTGGATAT+TGG | - | chr5_3:55094256-55094275 | Msa0818980:CDS | 20.0% |
| !!! | TTAAAATTGGATTGGATATT+GGG | - | chr5_3:55094257-55094276 | Msa0818980:CDS | 20.0% |
| !! | ATGTGAATTGTGAATTTAAT+TGG | - | chr5_3:55094313-55094332 | Msa0818980:CDS | 20.0% |
| !!! | TTCTATCATTTTTCTACAAT+AGG | + | chr5_3:55094619-55094638 | None:intergenic | 20.0% |
| !!! | GTTTTTGTTATAGTTTTTCT+AGG | + | chr5_3:55094747-55094766 | None:intergenic | 20.0% |
| !! | TGATATATGATAGAACATTA+TGG | - | chr5_3:55094808-55094827 | Msa0818980:CDS | 20.0% |
| !! | TTTATCATCTACAATATGAT+AGG | + | chr5_3:55096447-55096466 | None:intergenic | 20.0% |
| ! | TATCAGCATATTTGATTACT+AGG | - | chr5_3:55094203-55094222 | Msa0818980:CDS | 25.0% |
| ! | ATCAGCATATTTGATTACTA+GGG | - | chr5_3:55094204-55094223 | Msa0818980:CDS | 25.0% |
| !!! | AGATCTTTTTTTTTTTTGGG+TGG | - | chr5_3:55094349-55094368 | Msa0818980:CDS | 25.0% |
| ! | GATAATGCATAAAATATGCA+AGG | + | chr5_3:55094397-55094416 | None:intergenic | 25.0% |
| ! | TAGTGATTAATGAGTTAGAT+AGG | - | chr5_3:55094781-55094800 | Msa0818980:CDS | 25.0% |
| ! | AGTGATTAATGAGTTAGATA+GGG | - | chr5_3:55094782-55094801 | Msa0818980:CDS | 25.0% |
| ! | TATATGATAGAACATTATGG+TGG | - | chr5_3:55094811-55094830 | Msa0818980:CDS | 25.0% |
| ! | AACCTTACAAATCAATAGTA+CGG | + | chr5_3:55095006-55095025 | None:intergenic | 25.0% |
| ! | ACTTCATAACATAATGGTTT+CGG | - | chr5_3:55095050-55095069 | Msa0818980:CDS | 25.0% |
| ! | TAATGGTAAAGATGAAATTG+AGG | - | chr5_3:55095080-55095099 | Msa0818980:CDS | 25.0% |
| ! | ATTGAGGAATGTAACAATAA+TGG | - | chr5_3:55095096-55095115 | Msa0818980:CDS | 25.0% |
| !! | ATATGTATAACTTTTGCGAT+CGG | - | chr5_3:55095825-55095844 | Msa0818980:intron | 25.0% |
| ! | TAAAGATTATGATTCTGGAT+CGG | - | chr5_3:55095893-55095912 | Msa0818980:intron | 25.0% |
| ! | AATTATACCTCTTTCTCATT+TGG | + | chr5_3:55096319-55096338 | None:intergenic | 25.0% |
| AATTGTATTTGATGAGTGGA+TGG | + | chr5_3:55093835-55093854 | None:intergenic | 30.0% | |
| AACAAAAGAAACGGAATGAA+AGG | + | chr5_3:55093989-55094008 | None:intergenic | 30.0% | |
| CAAAACAGAGAAACAAGAAA+TGG | + | chr5_3:55094041-55094060 | None:intergenic | 30.0% | |
| CTCTCAATATAACTCTTACT+TGG | - | chr5_3:55094061-55094080 | Msa0818980:CDS | 30.0% | |
| ! | TTGAAGGCATATGAAGAAAT+GGG | + | chr5_3:55094140-55094159 | None:intergenic | 30.0% |
| ! | ATTGAAGGCATATGAAGAAA+TGG | + | chr5_3:55094141-55094160 | None:intergenic | 30.0% |
| !!! | TCTTTTTTTTTTTTGGGTGG+TGG | - | chr5_3:55094352-55094371 | Msa0818980:CDS | 30.0% |
| TGCATAAAATATGCAAGGTT+GGG | + | chr5_3:55094392-55094411 | None:intergenic | 30.0% | |
| ATGCATAAAATATGCAAGGT+TGG | + | chr5_3:55094393-55094412 | None:intergenic | 30.0% | |
| AATATTAGAGAGTGAGAGTT+GGG | - | chr5_3:55094584-55094603 | Msa0818980:CDS | 30.0% | |
| AAATGATAGAAACTTGACCT+AGG | - | chr5_3:55094628-55094647 | Msa0818980:CDS | 30.0% | |
| AGTAAGGAGAATATATCAGA+TGG | - | chr5_3:55094689-55094708 | Msa0818980:CDS | 30.0% | |
| TGGTGTTTAATCGATGTAAT+CGG | - | chr5_3:55094831-55094850 | Msa0818980:CDS | 30.0% | |
| ACCTTACAAATCAATAGTAC+GGG | + | chr5_3:55095005-55095024 | None:intergenic | 30.0% | |
| GCTTAGACTTCATAACATAA+TGG | - | chr5_3:55095044-55095063 | Msa0818980:CDS | 30.0% | |
| !! | ATGGTTTCGGTTGATAATAA+TGG | - | chr5_3:55095063-55095082 | Msa0818980:CDS | 30.0% |
| TCGAGAACTTGAAATATCTA+TGG | + | chr5_3:55095145-55095164 | None:intergenic | 30.0% | |
| ! | TTGAAGAAGTTGATCCTATT+AGG | + | chr5_3:55095228-55095247 | None:intergenic | 30.0% |
| AGGATCAACTTCTTCAAAAT+CGG | - | chr5_3:55095231-55095250 | Msa0818980:CDS | 30.0% | |
| TGAAGAAGATGACAATAGAA+TGG | - | chr5_3:55095388-55095407 | Msa0818980:CDS | 30.0% | |
| ! | AGATGACAATAGAATGGATT+AGG | - | chr5_3:55095394-55095413 | Msa0818980:CDS | 30.0% |
| ACAAGATGGTAGAATAACTT+TGG | + | chr5_3:55095606-55095625 | None:intergenic | 30.0% | |
| ATTATGTGTTTCCATTCATG+AGG | + | chr5_3:55095702-55095721 | None:intergenic | 30.0% | |
| TCATGAATGGAAACACATAA+TGG | - | chr5_3:55095701-55095720 | Msa0818980:intron | 30.0% | |
| !! | ATAATGGTAGTGGTAATTCT+CGG | - | chr5_3:55095717-55095736 | Msa0818980:intron | 30.0% |
| GAATCATAATCTTTACCTAG+AGG | + | chr5_3:55095888-55095907 | None:intergenic | 30.0% | |
| CTAGGTAAAGATTATGATTC+TGG | - | chr5_3:55095888-55095907 | Msa0818980:intron | 30.0% | |
| !! | TTCTGTACTTTTTGTGCATT+TGG | - | chr5_3:55096098-55096117 | Msa0818980:intron | 30.0% |
| ! | CATACAGAAAAGCATAAAAG+TGG | + | chr5_3:55096171-55096190 | None:intergenic | 30.0% |
| ! | CACTTTTATGCTTTTCTGTA+TGG | - | chr5_3:55096169-55096188 | Msa0818980:intron | 30.0% |
| !!! | GGGATTGTTCTATGTTTTTT+CGG | - | chr5_3:55096266-55096285 | Msa0818980:intron | 30.0% |
| ! | AAGTTCTAGCAGTTTCTTTA+TGG | - | chr5_3:55096610-55096629 | Msa0818980:five_prime_UTR | 30.0% |
| ! | TTCAGAAAGCTCTTCTTTTA+CGG | + | chr5_3:55096666-55096685 | None:intergenic | 30.0% |
| CTCAGAAGAACAAGAAGAAA+AGG | + | chr5_3:55093893-55093912 | None:intergenic | 35.0% | |
| !!! | ATTCGCTGATTTTTAGCATG+TGG | + | chr5_3:55093944-55093963 | None:intergenic | 35.0% |
| GGAATGAAAGGAAACAAGAA+TGG | + | chr5_3:55093977-55093996 | None:intergenic | 35.0% | |
| !!! | CTCTTGTTTTCTCAGTTCTT+AGG | - | chr5_3:55094099-55094118 | Msa0818980:CDS | 35.0% |
| GCATAAAATATGCAAGGTTG+GGG | + | chr5_3:55094391-55094410 | None:intergenic | 35.0% | |
| CAATATTAGAGAGTGAGAGT+TGG | - | chr5_3:55094583-55094602 | Msa0818980:CDS | 35.0% | |
| ATATTAGAGAGTGAGAGTTG+GGG | - | chr5_3:55094585-55094604 | Msa0818980:CDS | 35.0% | |
| AAACTTGACCTAGGTGATTT+GGG | - | chr5_3:55094637-55094656 | Msa0818980:CDS | 35.0% | |
| !! | ACCCGTACTATTGATTTGTA+AGG | - | chr5_3:55095001-55095020 | Msa0818980:CDS | 35.0% |
| ! | CATTGAGTGCTATTCCTAAT+AGG | - | chr5_3:55095211-55095230 | Msa0818980:CDS | 35.0% |
| TCTCTTAAGCTATGTGAACT+CGG | + | chr5_3:55095324-55095343 | None:intergenic | 35.0% | |
| ! | TGTTTTCAAAGAAACTCGAC+TGG | - | chr5_3:55095358-55095377 | Msa0818980:CDS | 35.0% |
| ! | GTTTTCAAAGAAACTCGACT+GGG | - | chr5_3:55095359-55095378 | Msa0818980:CDS | 35.0% |
| TTCTGTGATTCCAAAGAAGT+CGG | - | chr5_3:55095506-55095525 | Msa0818980:exon | 35.0% | |
| ! | CGATATCTTTTGGATTCCAT+CGG | + | chr5_3:55095638-55095657 | None:intergenic | 35.0% |
| ! | CTAAGTTTGGCGATATCTTT+TGG | + | chr5_3:55095648-55095667 | None:intergenic | 35.0% |
| AGATATCGCCAAACTTAGAA+AGG | - | chr5_3:55095650-55095669 | Msa0818980:intron | 35.0% | |
| GAACTTATAAGCCTCATGAA+TGG | - | chr5_3:55095688-55095707 | Msa0818980:intron | 35.0% | |
| ATGGAAACACATAATGGTAG+TGG | - | chr5_3:55095707-55095726 | Msa0818980:intron | 35.0% | |
| TTTGCTCAATATGCACTTTG+TGG | - | chr5_3:55095753-55095772 | Msa0818980:intron | 35.0% | |
| CACTTTGTGGTCTAAACTTA+GGG | - | chr5_3:55095766-55095785 | Msa0818980:intron | 35.0% | |
| TATACATATTCCAACACCGA+TGG | + | chr5_3:55095814-55095833 | None:intergenic | 35.0% | |
| TATACAATCCTTAGTCCTCT+AGG | - | chr5_3:55095870-55095889 | Msa0818980:intron | 35.0% | |
| AATCTTTACCTAGAGGACTA+AGG | + | chr5_3:55095881-55095900 | None:intergenic | 35.0% | |
| TGAGACTGAAATCATTTGAG+AGG | - | chr5_3:55095964-55095983 | Msa0818980:intron | 35.0% | |
| TGGAGGAATACTTGACATTT+GGG | - | chr5_3:55096046-55096065 | Msa0818980:intron | 35.0% | |
| !! | GTACTTTTTGTGCATTTGGT+TGG | - | chr5_3:55096102-55096121 | Msa0818980:intron | 35.0% |
| TTGTGCATTTGGTTGGAATA+TGG | - | chr5_3:55096109-55096128 | Msa0818980:intron | 35.0% | |
| CAAGATGAAAATCCAAAAGG+GGG | + | chr5_3:55096195-55096214 | None:intergenic | 35.0% | |
| CCAAGATGAAAATCCAAAAG+GGG | + | chr5_3:55096196-55096215 | None:intergenic | 35.0% | |
| GCCAAGATGAAAATCCAAAA+GGG | + | chr5_3:55096197-55096216 | None:intergenic | 35.0% | |
| AGCCAAGATGAAAATCCAAA+AGG | + | chr5_3:55096198-55096217 | None:intergenic | 35.0% | |
| ATATTGAGGATGACACTGTT+AGG | - | chr5_3:55096225-55096244 | Msa0818980:intron | 35.0% | |
| !!! | TGTTTTTTCGGTATGCTCTA+TGG | - | chr5_3:55096278-55096297 | Msa0818980:intron | 35.0% |
| CCTACTTATGACTTCTGTTT+CGG | - | chr5_3:55096341-55096360 | Msa0818980:intron | 35.0% | |
| AAGAAACTGCTAGAACTTAG+AGG | + | chr5_3:55096608-55096627 | None:intergenic | 35.0% | |
| ATGGAATATCATAGTCCAGA+TGG | - | chr5_3:55096629-55096648 | Msa0818980:five_prime_UTR | 35.0% | |
| ! | TCTTCTTTTACGGAAGATAG+TGG | + | chr5_3:55096656-55096675 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTTGGGTGGTGGC+CGG | - | chr5_3:55094356-55094375 | Msa0818980:CDS | 40.0% |
| !! | TGAGCTTAGCTAAGTTGGTT+TGG | + | chr5_3:55094419-55094438 | None:intergenic | 40.0% |
| CAGAGATGAAGATGTTGTGT+TGG | - | chr5_3:55094522-55094541 | Msa0818980:CDS | 40.0% | |
| GAAACTTGACCTAGGTGATT+TGG | - | chr5_3:55094636-55094655 | Msa0818980:CDS | 40.0% | |
| !! | GACGTGTTGATTCTGTAGTA+AGG | - | chr5_3:55094673-55094692 | Msa0818980:CDS | 40.0% |
| CAACCTTTATCTCGCTATGT+GGG | + | chr5_3:55094858-55094877 | None:intergenic | 40.0% | |
| GGTACAGAACAAATACTGCA+AGG | + | chr5_3:55094984-55095003 | None:intergenic | 40.0% | |
| ! | TTCAAGTTCTCGAAGAGCAA+TGG | - | chr5_3:55095152-55095171 | Msa0818980:CDS | 40.0% |
| ATGGTGACAGATGAAAATCC+TGG | - | chr5_3:55095171-55095190 | Msa0818980:CDS | 40.0% | |
| GCATAAGATCCACGCAAAAA+GGG | + | chr5_3:55095436-55095455 | None:intergenic | 40.0% | |
| !! | ATCTTATGCGTTGCTGTTTC+AGG | - | chr5_3:55095447-55095466 | Msa0818980:CDS | 40.0% |
| TCAACATACCAGTCATGACA+AGG | + | chr5_3:55095485-55095504 | None:intergenic | 40.0% | |
| GCAGTACTCCTTTCTAAGTT+TGG | + | chr5_3:55095661-55095680 | None:intergenic | 40.0% | |
| !! | AGAAAGGAGTACTGCAAGAA+TGG | - | chr5_3:55095666-55095685 | Msa0818980:intron | 40.0% |
| GCACTTTGTGGTCTAAACTT+AGG | - | chr5_3:55095765-55095784 | Msa0818980:intron | 40.0% | |
| GTATATAGACCAGCAATTGC+AGG | + | chr5_3:55095855-55095874 | None:intergenic | 40.0% | |
| CAGTCGAAAATAGACCAAAG+TGG | - | chr5_3:55096021-55096040 | Msa0818980:intron | 40.0% | |
| GAAAATAGACCAAAGTGGAG+TGG | - | chr5_3:55096026-55096045 | Msa0818980:intron | 40.0% | |
| GTGGAGGAATACTTGACATT+TGG | - | chr5_3:55096045-55096064 | Msa0818980:intron | 40.0% | |
| AATATGGAGAGACTTGGCTT+TGG | - | chr5_3:55096125-55096144 | Msa0818980:intron | 40.0% | |
| ! | CCCCTTTTGGATTTTCATCT+TGG | - | chr5_3:55096193-55096212 | Msa0818980:intron | 40.0% |
| CTTGGCTGCTGTTAATATTG+AGG | - | chr5_3:55096211-55096230 | Msa0818980:intron | 40.0% | |
| ACTGTTAGGCAATGTCTAGT+AGG | - | chr5_3:55096239-55096258 | Msa0818980:intron | 40.0% | |
| !! | TTTTTCGGTATGCTCTATGG+TGG | - | chr5_3:55096281-55096300 | Msa0818980:intron | 40.0% |
| ! | GTATGCTCTATGGTGGTTTT+TGG | - | chr5_3:55096288-55096307 | Msa0818980:intron | 40.0% |
| CCGAAACAGAAGTCATAAGT+AGG | + | chr5_3:55096344-55096363 | None:intergenic | 40.0% | |
| CACTTTGGCTATTCTGTTGT+TGG | - | chr5_3:55096387-55096406 | Msa0818980:intron | 40.0% | |
| TCTTGCTCAAGAAATGCGAA+CGG | - | chr5_3:55096415-55096434 | Msa0818980:intron | 40.0% | |
| GTGTGTCATCAACCAAATCT+GGG | - | chr5_3:55096528-55096547 | Msa0818980:five_prime_UTR | 40.0% | |
| CTTGACGGTTTGAAAGTAGA+AGG | + | chr5_3:55096584-55096603 | None:intergenic | 40.0% | |
| CTAGAACTTAGAGGACTTGA+CGG | + | chr5_3:55096599-55096618 | None:intergenic | 40.0% | |
| GGAGATTCTCTTTGTATCAC+CGG | + | chr5_3:55096725-55096744 | None:intergenic | 40.0% | |
| !!! | TTTTTTTTTGGGTGGTGGCC+GGG | - | chr5_3:55094357-55094376 | Msa0818980:CDS | 45.0% |
| AAGGTTGGGGTTCAAAATCC+CGG | + | chr5_3:55094378-55094397 | None:intergenic | 45.0% | |
| TCTACATGCCCAAATCACCT+AGG | + | chr5_3:55094648-55094667 | None:intergenic | 45.0% | |
| GAGAGTAGACGAATCACTAG+AGG | - | chr5_3:55094711-55094730 | Msa0818980:CDS | 45.0% | |
| CCAACCTTTATCTCGCTATG+TGG | + | chr5_3:55094859-55094878 | None:intergenic | 45.0% | |
| CCACATAGCGAGATAAAGGT+TGG | - | chr5_3:55094856-55094875 | Msa0818980:CDS | 45.0% | |
| GAATAGCACTCAATGTGCTC+GGG | + | chr5_3:55095206-55095225 | None:intergenic | 45.0% | |
| GGAATAGCACTCAATGTGCT+CGG | + | chr5_3:55095207-55095226 | None:intergenic | 45.0% | |
| AGTGGCAAGACGCTTGAATT+TGG | + | chr5_3:55095268-55095287 | None:intergenic | 45.0% | |
| AAGCTATGTGAACTCGGAGA+AGG | + | chr5_3:55095318-55095337 | None:intergenic | 45.0% | |
| GATTAGGAACCCGATGAACA+TGG | - | chr5_3:55095410-55095429 | Msa0818980:CDS | 45.0% | |
| CAAAAAGGGCCATGTTCATC+GGG | + | chr5_3:55095422-55095441 | None:intergenic | 45.0% | |
| GCAAAAAGGGCCATGTTCAT+CGG | + | chr5_3:55095423-55095442 | None:intergenic | 45.0% | |
| CGCATAAGATCCACGCAAAA+AGG | + | chr5_3:55095437-55095456 | None:intergenic | 45.0% | |
| !! | TTATGCGTTGCTGTTTCAGG+TGG | - | chr5_3:55095450-55095469 | Msa0818980:CDS | 45.0% |
| ATCCTGTTCCTTGTCATGAC+TGG | - | chr5_3:55095474-55095493 | Msa0818980:CDS | 45.0% | |
| TACCAGTCATGACAAGGAAC+AGG | + | chr5_3:55095479-55095498 | None:intergenic | 45.0% | |
| TGATTCCAAAGAAGTCGGCA+AGG | - | chr5_3:55095511-55095530 | Msa0818980:exon | 45.0% | |
| ! | ATCGGCACAGAAGTACAAGA+TGG | + | chr5_3:55095620-55095639 | None:intergenic | 45.0% |
| ATCTTGTACTTCTGTGCCGA+TGG | - | chr5_3:55095619-55095638 | Msa0818980:intron | 45.0% | |
| GTATAAAAGATCTGAGCGCC+CGG | - | chr5_3:55095788-55095807 | Msa0818980:intron | 45.0% | |
| AATAGACCAAAGTGGAGTGG+AGG | - | chr5_3:55096029-55096048 | Msa0818980:intron | 45.0% | |
| AGTATTCCTCCACTCCACTT+TGG | + | chr5_3:55096038-55096057 | None:intergenic | 45.0% | |
| GGTTGGAATATGGAGAGACT+TGG | - | chr5_3:55096119-55096138 | Msa0818980:intron | 45.0% | |
| ! | TTTTCTGTATGGCCCCCTTT+TGG | - | chr5_3:55096180-55096199 | Msa0818980:intron | 45.0% |
| !! | TGCTCTATGGTGGTTTTTGG+AGG | - | chr5_3:55096291-55096310 | Msa0818980:intron | 45.0% |
| GGAGGATCCAAATGAGAAAG+AGG | - | chr5_3:55096309-55096328 | Msa0818980:intron | 45.0% | |
| CTTGCTCAAGAAATGCGAAC+GGG | - | chr5_3:55096416-55096435 | Msa0818980:intron | 45.0% | |
| TTGCTCAAGAAATGCGAACG+GGG | - | chr5_3:55096417-55096436 | Msa0818980:intron | 45.0% | |
| GGTGTGTCATCAACCAAATC+TGG | - | chr5_3:55096527-55096546 | Msa0818980:five_prime_UTR | 45.0% | |
| AGGAGAACTTGTCCCAGATT+TGG | + | chr5_3:55096543-55096562 | None:intergenic | 45.0% | |
| GATTCTCTTTGTATCACCGG+CGG | + | chr5_3:55096722-55096741 | None:intergenic | 45.0% | |
| GCTCGTGAGCTTAGCTAAGT+TGG | + | chr5_3:55094424-55094443 | None:intergenic | 50.0% | |
| AGACGAATCACTAGAGGCAG+AGG | - | chr5_3:55094717-55094736 | Msa0818980:CDS | 50.0% | |
| GGTCCCACATAGCGAGATAA+AGG | - | chr5_3:55094852-55094871 | Msa0818980:CDS | 50.0% | |
| AAGGCACAGATTGTGAAGCC+TGG | + | chr5_3:55095299-55095318 | None:intergenic | 50.0% | |
| ! | TGAACATGGCCCTTTTTGCG+TGG | - | chr5_3:55095424-55095443 | Msa0818980:CDS | 50.0% |
| !! | GCATTCCTTGCCGACTTCTT+TGG | + | chr5_3:55095519-55095538 | None:intergenic | 50.0% |
| AGAAGTCGGCAAGGAATGCA+TGG | - | chr5_3:55095520-55095539 | Msa0818980:intron | 50.0% | |
| ATATTCCAACACCGATGGCC+GGG | + | chr5_3:55095809-55095828 | None:intergenic | 50.0% | |
| CATATTCCAACACCGATGGC+CGG | + | chr5_3:55095810-55095829 | None:intergenic | 50.0% | |
| TGGATCGGACGAAGAATCAC+AGG | - | chr5_3:55095908-55095927 | Msa0818980:intron | 50.0% | |
| AGGCAATGTCTAGTAGGTGC+TGG | - | chr5_3:55096245-55096264 | Msa0818980:intron | 50.0% | |
| GGCAATGTCTAGTAGGTGCT+GGG | - | chr5_3:55096246-55096265 | Msa0818980:intron | 50.0% | |
| TGCTCAAGAAATGCGAACGG+GGG | - | chr5_3:55096418-55096437 | Msa0818980:intron | 50.0% | |
| ! | TCTGGGACAAGTTCTCCTCT+TGG | - | chr5_3:55096545-55096564 | Msa0818980:five_prime_UTR | 50.0% |
| !! | ACGGAAGATAGTGGACCATC+TGG | + | chr5_3:55096647-55096666 | None:intergenic | 50.0% |
| AATGATTCCACCAACTCCGC+CGG | - | chr5_3:55096703-55096722 | Msa0818980:five_prime_UTR | 50.0% | |
| GTGCTCGGGAACTTTCTACC+AGG | + | chr5_3:55095192-55095211 | None:intergenic | 55.0% | |
| CAAGCGTCTTGCCACTCAGA+TGG | - | chr5_3:55095272-55095291 | Msa0818980:CDS | 55.0% | |
| TCTTGCCACTCAGATGGACC+AGG | - | chr5_3:55095278-55095297 | Msa0818980:CDS | 55.0% | |
| TGAAGCCTGGTCCATCTGAG+TGG | + | chr5_3:55095286-55095305 | None:intergenic | 55.0% | |
| ATCGGTGCACCTGCAATTGC+TGG | - | chr5_3:55095843-55095862 | Msa0818980:intron | 55.0% | |
| CTTCTGTTTCGGCAAGCCTG+CGG | - | chr5_3:55096352-55096371 | Msa0818980:intron | 55.0% | |
| TTTCGGCAAGCCTGCGGTTT+CGG | - | chr5_3:55096358-55096377 | Msa0818980:intron | 55.0% | |
| CGGTTTCGGACTGCACACTT+TGG | - | chr5_3:55096372-55096391 | Msa0818980:intron | 55.0% | |
| TCGCGACGCAGAGGTGAAAT+CGG | + | chr5_3:55096506-55096525 | None:intergenic | 55.0% | |
| ATTTCACCTCTGCGTCGCGA+AGG | - | chr5_3:55096506-55096525 | Msa0818980:five_prime_UTR | 55.0% | |
| ! | GGAGACGAGTTGACACCAAG+AGG | + | chr5_3:55096563-55096582 | None:intergenic | 55.0% |
| CTTTGTATCACCGGCGGAGT+TGG | + | chr5_3:55096716-55096735 | None:intergenic | 55.0% | |
| AGTGTGCAGTCCGAAACCGC+AGG | + | chr5_3:55096371-55096390 | None:intergenic | 60.0% | |
| GCAGAGGTGAAATCGGCGGT+TGG | + | chr5_3:55096499-55096518 | None:intergenic | 60.0% | |
| CGACGCAGAGGTGAAATCGG+CGG | + | chr5_3:55096503-55096522 | None:intergenic | 60.0% | |
| TGTATCACCGGCGGAGTTGG+TGG | + | chr5_3:55096713-55096732 | None:intergenic | 60.0% | |
| AGATCTGAGCGCCCGGCCAT+CGG | - | chr5_3:55095795-55095814 | Msa0818980:intron | 65.0% | |
| GACACACCTTCGCGACGCAG+AGG | + | chr5_3:55096515-55096534 | None:intergenic | 65.0% | |
| GAGCGCCCGGCCATCGGTGT+TGG | - | chr5_3:55095801-55095820 | Msa0818980:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 55093832 | 55096745 | 55093832 | ID=Msa0818980;Name=Msa0818980 |
| chr5_3 | mRNA | 55093832 | 55096745 | 55093832 | ID=Msa0818980-mRNA-1;Parent=Msa0818980;Name=Msa0818980-mRNA-1;_AED=0.10;_eAED=0.10;_QI=311|0|0.5|1|0|0|2|0|561 |
| chr5_3 | exon | 55093832 | 55095536 | 55093832 | ID=Msa0818980-mRNA-1:exon:16741;Parent=Msa0818980-mRNA-1 |
| chr5_3 | exon | 55096457 | 55096745 | 55096457 | ID=Msa0818980-mRNA-1:exon:16740;Parent=Msa0818980-mRNA-1 |
| chr5_3 | five_prime_UTR | 55096457 | 55096745 | 55096457 | ID=Msa0818980-mRNA-1:five_prime_utr;Parent=Msa0818980-mRNA-1 |
| chr5_3 | five_prime_UTR | 55095515 | 55095536 | 55095515 | ID=Msa0818980-mRNA-1:five_prime_utr;Parent=Msa0818980-mRNA-1 |
| chr5_3 | CDS | 55093832 | 55095514 | 55093832 | ID=Msa0818980-mRNA-1:cds;Parent=Msa0818980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
