Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738630 | AES99695.1 | 98.574 | 561 | 8 | 0 | 1 | 561 | 1 | 561 | 0.0 | 1158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738630 | G7K7B5 | 98.574 | 561 | 8 | 0 | 1 | 561 | 1 | 561 | 0.0 | 1158 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012240 | Msa0738630 | -0.800969 | 1.123035e-48 | -8.615850e-47 |
| Msa0103000 | Msa0738630 | -0.800585 | 1.344970e-48 | -8.615850e-47 |
| Msa0654760 | Msa0738630 | 0.814857 | 1.244091e-51 | -8.615850e-47 |
| Msa0677290 | Msa0738630 | -0.805598 | 1.235742e-49 | -8.615850e-47 |
| Msa0697670 | Msa0738630 | -0.805039 | 1.618390e-49 | -8.615850e-47 |
| Msa0709500 | Msa0738630 | -0.804600 | 1.998202e-49 | -8.615850e-47 |
| Msa0717920 | Msa0738630 | 0.809896 | 1.508209e-50 | -8.615850e-47 |
| Msa0734660 | Msa0738630 | -0.814215 | 1.725676e-51 | -8.615850e-47 |
| Msa0738630 | Msa0776220 | -0.809715 | 1.649976e-50 | -8.615850e-47 |
| Msa0738630 | Msa0783760 | 0.995563 | 1.563771e-217 | -8.615850e-47 |
| Msa0738630 | Msa0790850 | -0.807544 | 4.800282e-50 | -8.615850e-47 |
| Msa0738630 | Msa0813320 | 0.824129 | 9.538529e-54 | -8.615850e-47 |
| Msa0738630 | Msa0813670 | -0.820451 | 6.812591e-53 | -8.615850e-47 |
| Msa0738630 | Msa0813720 | -0.801550 | 8.542277e-49 | -8.615850e-47 |
| Msa0738630 | Msa0818980 | 0.996603 | 1.081837e-229 | -8.615850e-47 |
| Msa0738630 | Msa0819030 | 0.992705 | 6.327490e-195 | -8.615850e-47 |
| Msa0738630 | Msa0836660 | 0.804170 | 2.456953e-49 | -8.615850e-47 |
| Msa0738630 | Msa0854120 | -0.814031 | 1.894839e-51 | -8.615850e-47 |
| Msa0738630 | Msa0867050 | 0.814053 | 1.874309e-51 | -8.615850e-47 |
| Msa0738630 | Msa0902760 | -0.822921 | 1.828676e-53 | -8.615850e-47 |
| Msa0738630 | Msa0967650 | 0.825108 | 5.610275e-54 | -8.615850e-47 |
| Msa0738630 | Msa1003310 | -0.802142 | 6.454236e-49 | -8.615850e-47 |
| Msa0738630 | Msa1013400 | -0.834837 | 2.379296e-56 | -8.615850e-47 |
| Msa0738630 | Msa1040400 | -0.816647 | 4.966056e-52 | -8.615850e-47 |
| Msa0738630 | Msa1066490 | -0.803815 | 2.912029e-49 | -8.615850e-47 |
| Msa0738630 | Msa1081150 | -0.812606 | 3.894915e-51 | -8.615850e-47 |
| Msa0738630 | Msa1093530 | -0.821955 | 3.065885e-53 | -8.615850e-47 |
| Msa0738630 | Msa1104140 | -0.802395 | 5.725751e-49 | -8.615850e-47 |
| Msa0738630 | Msa1125760 | -0.813013 | 3.172605e-51 | -8.615850e-47 |
| Msa0738630 | Msa1126510 | -0.817478 | 3.229386e-52 | -8.615850e-47 |
| Msa0738630 | Msa1166860 | -0.824981 | 6.011853e-54 | -8.615850e-47 |
| Msa0738630 | Msa1171360 | -0.805413 | 1.351308e-49 | -8.615850e-47 |
| Msa0738630 | Msa1181850 | -0.811862 | 5.660832e-51 | -8.615850e-47 |
| Msa0738630 | Msa1181860 | -0.808471 | 3.047853e-50 | -8.615850e-47 |
| Msa0738630 | Msa1187840 | -0.807322 | 5.348075e-50 | -8.615850e-47 |
| Msa0738630 | Msa1193070 | -0.801251 | 9.834083e-49 | -8.615850e-47 |
| Msa0738630 | Msa1207270 | -0.812340 | 4.452983e-51 | -8.615850e-47 |
| Msa0738630 | Msa1211890 | -0.805309 | 1.420366e-49 | -8.615850e-47 |
| Msa0738630 | Msa1218600 | -0.814127 | 1.804859e-51 | -8.615850e-47 |
| Msa0738630 | Msa1257510 | -0.800084 | 1.701545e-48 | -8.615850e-47 |
| Msa0738630 | Msa1283170 | -0.814458 | 1.524890e-51 | -8.615850e-47 |
| Msa0738630 | Msa1316780 | -0.805296 | 1.429714e-49 | -8.615850e-47 |
| Msa0738630 | Msa1316830 | -0.802488 | 5.478723e-49 | -8.615850e-47 |
| Msa0738630 | Msa1392200 | -0.805283 | 1.438602e-49 | -8.615850e-47 |
| Msa0738630 | Msa1396750 | 0.827452 | 1.552500e-54 | -8.615850e-47 |
| Msa0738630 | Msa1410430 | 0.815071 | 1.115202e-51 | -8.615850e-47 |
| Msa0738630 | Msa1417870 | -0.808262 | 3.376446e-50 | -8.615850e-47 |
| Msa0738630 | Msa1448690 | -0.801750 | 7.769745e-49 | -8.615850e-47 |
| Msa0140570 | Msa0738630 | -0.809915 | 1.494255e-50 | -8.615850e-47 |
| Msa0173830 | Msa0738630 | -0.814738 | 1.322077e-51 | -8.615850e-47 |
| Msa0193120 | Msa0738630 | -0.806560 | 7.750931e-50 | -8.615850e-47 |
| Msa0238070 | Msa0738630 | 0.832090 | 1.152332e-55 | -8.615850e-47 |
| Msa0366890 | Msa0738630 | -0.802201 | 6.277193e-49 | -8.615850e-47 |
| Msa0376450 | Msa0738630 | 0.826150 | 3.177398e-54 | -8.615850e-47 |
| Msa0395960 | Msa0738630 | -0.810195 | 1.300458e-50 | -8.615850e-47 |
| Msa0430620 | Msa0738630 | -0.811717 | 6.087003e-51 | -8.615850e-47 |
| Msa0436050 | Msa0738630 | -0.807351 | 5.274088e-50 | -8.615850e-47 |
| Msa0465790 | Msa0738630 | -0.813966 | 1.958007e-51 | -8.615850e-47 |
| Msa0471440 | Msa0738630 | -0.818769 | 1.648776e-52 | -8.615850e-47 |
| Msa0471720 | Msa0738630 | 0.823782 | 1.150836e-53 | -8.615850e-47 |
| Msa0264570 | Msa0738630 | -0.812133 | 4.941652e-51 | -8.615850e-47 |
| Msa0268130 | Msa0738630 | -0.804835 | 1.784803e-49 | -8.615850e-47 |
| Msa0280610 | Msa0738630 | -0.821494 | 3.920095e-53 | -8.615850e-47 |
| Msa0298990 | Msa0738630 | -0.803684 | 3.100208e-49 | -8.615850e-47 |
| Msa0358170 | Msa0738630 | -0.807031 | 6.164594e-50 | -8.615850e-47 |
| Msa0483860 | Msa0738630 | -0.828449 | 8.937531e-55 | -8.615850e-47 |
| Msa0491020 | Msa0738630 | -0.810041 | 1.403875e-50 | -8.615850e-47 |
| Msa0516510 | Msa0738630 | 0.825100 | 5.633386e-54 | -8.615850e-47 |
| Msa0561540 | Msa0738630 | 0.810288 | 1.241849e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738630 | MtrunA17_Chr5g0437931 | 98.417 | 379 | 6 | 0 | 1 | 379 | 1 | 379 | 0.0 | 781 |
| Msa0738630 | MtrunA17_Chr3g0114311 | 63.186 | 565 | 141 | 6 | 1 | 561 | 1 | 502 | 0.0 | 653 |
| Msa0738630 | MtrunA17_Chr3g0114321 | 66.667 | 483 | 133 | 5 | 1 | 479 | 1 | 459 | 0.0 | 632 |
| Msa0738630 | MtrunA17_Chr5g0437921 | 98.684 | 152 | 2 | 0 | 410 | 561 | 1 | 152 | 2.32e-106 | 315 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738630 | AT3G10980.1 | 59.298 | 570 | 206 | 10 | 5 | 560 | 6 | 563 | 0.0 | 631 |
| Msa0738630 | AT5G05350.1 | 56.929 | 534 | 199 | 7 | 30 | 560 | 20 | 525 | 0.0 | 598 |
Find 125 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTCTAGCAGTTTCTTTA+TGG | 0.127897 | 5_1:-56394345 | Msa0738630:CDS |
| ATCTTATGCGTTGCTGTTTC+AGG | 0.172175 | 5_1:-56395508 | Msa0738630:CDS |
| CGCATAAGATCCACGCAAAA+AGG | 0.191675 | 5_1:+56395521 | None:intergenic |
| CTAAGTTTGGCGATATCTTT+TGG | 0.228804 | 5_1:+56395310 | None:intergenic |
| CTAGGTAAAGATTATGATTC+TGG | 0.262677 | 5_1:-56395067 | Msa0738630:CDS |
| GCATTCCTTGCCGACTTCTT+TGG | 0.266606 | 5_1:+56395439 | None:intergenic |
| TTTCGGCAAGCCTGCGGTTT+CGG | 0.267613 | 5_1:-56394597 | Msa0738630:CDS |
| TTGAAGAAGTTGATCCTATT+AGG | 0.274814 | 5_1:+56395730 | None:intergenic |
| AATTATACCTCTTTCTCATT+TGG | 0.282202 | 5_1:+56394639 | None:intergenic |
| AGTGGCAAGACGCTTGAATT+TGG | 0.310045 | 5_1:+56395690 | None:intergenic |
| CACTTTGGCTATTCTGTTGT+TGG | 0.321220 | 5_1:-56394568 | Msa0738630:CDS |
| GCAGTACTCCTTTCTAAGTT+TGG | 0.322615 | 5_1:+56395297 | None:intergenic |
| TTGTGCATTTGGTTGGAATA+TGG | 0.330037 | 5_1:-56394846 | Msa0738630:CDS |
| CCTACTTATGACTTCTGTTT+CGG | 0.336304 | 5_1:-56394614 | Msa0738630:CDS |
| GTGGAGGAATACTTGACATT+TGG | 0.338866 | 5_1:-56394910 | Msa0738630:CDS |
| TCGAGAACTTGAAATATCTA+TGG | 0.347292 | 5_1:+56395813 | None:intergenic |
| AGGAGAACTTGTCCCAGATT+TGG | 0.348843 | 5_1:+56394415 | None:intergenic |
| GGTGTGTCATCAACCAAATC+TGG | 0.354088 | 5_1:-56394428 | Msa0738630:CDS |
| ATTGAGGAATGTAACAATAA+TGG | 0.360036 | 5_1:-56395859 | Msa0738630:CDS |
| CATTGAGTGCTATTCCTAAT+AGG | 0.364914 | 5_1:-56395744 | Msa0738630:CDS |
| ACTTCATAACATAATGGTTT+CGG | 0.365084 | 5_1:-56395905 | Msa0738630:exon |
| CTCTCAATATAACTCTTACT+TGG | 0.365662 | 5_1:-56396893 | Msa0738630:five_prime_UTR |
| ATGGTTTCGGTTGATAATAA+TGG | 0.365993 | 5_1:-56395892 | Msa0738630:CDS |
| ATCGGTGCACCTGCAATTGC+TGG | 0.371089 | 5_1:-56395112 | Msa0738630:CDS |
| CACTTTGTGGTCTAAACTTA+GGG | 0.372572 | 5_1:-56395189 | Msa0738630:CDS |
| GCACTTTGTGGTCTAAACTT+AGG | 0.372663 | 5_1:-56395190 | Msa0738630:CDS |
| AGGATCAACTTCTTCAAAAT+CGG | 0.383821 | 5_1:-56395724 | Msa0738630:CDS |
| AAGAAACTGCTAGAACTTAG+AGG | 0.389392 | 5_1:+56394350 | None:intergenic |
| TTTGCTCAATATGCACTTTG+TGG | 0.392887 | 5_1:-56395202 | Msa0738630:CDS |
| AGATGACAATAGAATGGATT+AGG | 0.399686 | 5_1:-56395561 | Msa0738630:CDS |
| CTTTGTATCACCGGCGGAGT+TGG | 0.401446 | 5_1:+56394242 | None:intergenic |
| GCTTAGACTTCATAACATAA+TGG | 0.404890 | 5_1:-56395911 | Msa0738630:exon |
| TGGAGGAATACTTGACATTT+GGG | 0.407333 | 5_1:-56394909 | Msa0738630:CDS |
| CTTGACGGTTTGAAAGTAGA+AGG | 0.422675 | 5_1:+56394374 | None:intergenic |
| TTTATCATCTACAATATGAT+AGG | 0.429440 | 5_1:+56394511 | None:intergenic |
| CAAAACAGAGAAACAAGAAA+TGG | 0.435202 | 5_1:+56396916 | None:intergenic |
| GAGCGCCCGGCCATCGGTGT+TGG | 0.439028 | 5_1:-56395154 | Msa0738630:CDS |
| GCCAAGATGAAAATCCAAAA+GGG | 0.440423 | 5_1:+56394761 | None:intergenic |
| ATATTGAGGATGACACTGTT+AGG | 0.445757 | 5_1:-56394730 | Msa0738630:CDS |
| CTTGCTCAAGAAATGCGAAC+GGG | 0.448066 | 5_1:-56394539 | Msa0738630:CDS |
| GTATATAGACCAGCAATTGC+AGG | 0.456063 | 5_1:+56395103 | None:intergenic |
| AGGCAATGTCTAGTAGGTGC+TGG | 0.460261 | 5_1:-56394710 | Msa0738630:CDS |
| CTCAGAAGAACAAGAAGAAA+AGG | 0.461285 | 5_1:+56397064 | None:intergenic |
| ACAAGATGGTAGAATAACTT+TGG | 0.464879 | 5_1:+56395352 | None:intergenic |
| AGAAAGGAGTACTGCAAGAA+TGG | 0.467535 | 5_1:-56395289 | Msa0738630:CDS |
| AATATGGAGAGACTTGGCTT+TGG | 0.469184 | 5_1:-56394830 | Msa0738630:CDS |
| CTTGGCTGCTGTTAATATTG+AGG | 0.476409 | 5_1:-56394744 | Msa0738630:CDS |
| CTAGAACTTAGAGGACTTGA+CGG | 0.477113 | 5_1:+56394359 | None:intergenic |
| ATCCTGTTCCTTGTCATGAC+TGG | 0.479597 | 5_1:-56395481 | Msa0738630:CDS |
| TGTATCACCGGCGGAGTTGG+TGG | 0.481477 | 5_1:+56394245 | None:intergenic |
| AATCTTTACCTAGAGGACTA+AGG | 0.482009 | 5_1:+56395077 | None:intergenic |
| TCGCGACGCAGAGGTGAAAT+CGG | 0.484106 | 5_1:+56394452 | None:intergenic |
| TCATGAATGGAAACACATAA+TGG | 0.490549 | 5_1:-56395254 | Msa0738630:CDS |
| TACCAGTCATGACAAGGAAC+AGG | 0.492780 | 5_1:+56395479 | None:intergenic |
| GAACTTATAAGCCTCATGAA+TGG | 0.495861 | 5_1:-56395267 | Msa0738630:CDS |
| CATATTCCAACACCGATGGC+CGG | 0.496400 | 5_1:+56395148 | None:intergenic |
| TGAAGAAGATGACAATAGAA+TGG | 0.501131 | 5_1:-56395567 | Msa0738630:CDS |
| AGATATCGCCAAACTTAGAA+AGG | 0.504835 | 5_1:-56395305 | Msa0738630:CDS |
| ACGGAAGATAGTGGACCATC+TGG | 0.504935 | 5_1:+56394311 | None:intergenic |
| AACAAAAGAAACGGAATGAA+AGG | 0.507231 | 5_1:+56396968 | None:intergenic |
| GGAGATTCTCTTTGTATCAC+CGG | 0.509159 | 5_1:+56394233 | None:intergenic |
| GGAGGATCCAAATGAGAAAG+AGG | 0.509367 | 5_1:-56394646 | Msa0738630:CDS |
| AGTATTCCTCCACTCCACTT+TGG | 0.512153 | 5_1:+56394920 | None:intergenic |
| ATATTCCAACACCGATGGCC+GGG | 0.512263 | 5_1:+56395149 | None:intergenic |
| AGCCAAGATGAAAATCCAAA+AGG | 0.513987 | 5_1:+56394760 | None:intergenic |
| TATACAATCCTTAGTCCTCT+AGG | 0.515282 | 5_1:-56395085 | Msa0738630:CDS |
| TCTGGGACAAGTTCTCCTCT+TGG | 0.516682 | 5_1:-56394410 | Msa0738630:CDS |
| ACTATGTAAAACAAAAGAAA+CGG | 0.528042 | 5_1:+56396959 | None:intergenic |
| GGAATAGCACTCAATGTGCT+CGG | 0.531235 | 5_1:+56395751 | None:intergenic |
| GGTTGGAATATGGAGAGACT+TGG | 0.540609 | 5_1:-56394836 | Msa0738630:CDS |
| CGGTTTCGGACTGCACACTT+TGG | 0.541886 | 5_1:-56394583 | Msa0738630:CDS |
| ATCTTGTACTTCTGTGCCGA+TGG | 0.543050 | 5_1:-56395336 | Msa0738630:CDS |
| CAAGCGTCTTGCCACTCAGA+TGG | 0.543275 | 5_1:-56395683 | Msa0738630:CDS |
| TTATGCGTTGCTGTTTCAGG+TGG | 0.547321 | 5_1:-56395505 | Msa0738630:CDS |
| GGCAATGTCTAGTAGGTGCT+GGG | 0.548348 | 5_1:-56394709 | Msa0738630:CDS |
| ATAATGGTAGTGGTAATTCT+CGG | 0.552969 | 5_1:-56395238 | Msa0738630:CDS |
| TAATGGTAAAGATGAAATTG+AGG | 0.553613 | 5_1:-56395875 | Msa0738630:CDS |
| ATTATGTGTTTCCATTCATG+AGG | 0.556074 | 5_1:+56395256 | None:intergenic |
| GAATAGCACTCAATGTGCTC+GGG | 0.557900 | 5_1:+56395752 | None:intergenic |
| CCGAAACAGAAGTCATAAGT+AGG | 0.558846 | 5_1:+56394614 | None:intergenic |
| TTCAAGTTCTCGAAGAGCAA+TGG | 0.559290 | 5_1:-56395803 | Msa0738630:CDS |
| AAGGCACAGATTGTGAAGCC+TGG | 0.561142 | 5_1:+56395659 | None:intergenic |
| GGAATGAAAGGAAACAAGAA+TGG | 0.566302 | 5_1:+56396980 | None:intergenic |
| AGATCTGAGCGCCCGGCCAT+CGG | 0.567721 | 5_1:-56395160 | Msa0738630:CDS |
| ATGGAAACACATAATGGTAG+TGG | 0.568927 | 5_1:-56395248 | Msa0738630:CDS |
| AATTGTATTTGATGAGTGGA+TGG | 0.570063 | 5_1:+56397120 | None:intergenic |
| AGAAGTCGGCAAGGAATGCA+TGG | 0.573813 | 5_1:-56395435 | Msa0738630:CDS |
| CTTCTGTTTCGGCAAGCCTG+CGG | 0.574737 | 5_1:-56394603 | Msa0738630:CDS |
| GTGTGTCATCAACCAAATCT+GGG | 0.575863 | 5_1:-56394427 | Msa0738630:CDS |
| ATTTCACCTCTGCGTCGCGA+AGG | 0.576158 | 5_1:-56394449 | Msa0738630:CDS |
| AAGCTATGTGAACTCGGAGA+AGG | 0.576858 | 5_1:+56395640 | None:intergenic |
| TTCTGTGATTCCAAAGAAGT+CGG | 0.578176 | 5_1:-56395449 | Msa0738630:CDS |
| TCTCTTAAGCTATGTGAACT+CGG | 0.578236 | 5_1:+56395634 | None:intergenic |
| ATGGAATATCATAGTCCAGA+TGG | 0.578861 | 5_1:-56394326 | Msa0738630:CDS |
| GTATAAAAGATCTGAGCGCC+CGG | 0.584269 | 5_1:-56395167 | Msa0738630:CDS |
| TGGATCGGACGAAGAATCAC+AGG | 0.586235 | 5_1:-56395047 | Msa0738630:CDS |
| ACTGTTAGGCAATGTCTAGT+AGG | 0.586758 | 5_1:-56394716 | Msa0738630:CDS |
| CATACAGAAAAGCATAAAAG+TGG | 0.591275 | 5_1:+56394787 | None:intergenic |
| TTGCTCAAGAAATGCGAACG+GGG | 0.591460 | 5_1:-56394538 | Msa0738630:CDS |
| TCTTGCCACTCAGATGGACC+AGG | 0.594178 | 5_1:-56395677 | Msa0738630:CDS |
| GCAGAGGTGAAATCGGCGGT+TGG | 0.594442 | 5_1:+56394459 | None:intergenic |
| AATGATTCCACCAACTCCGC+CGG | 0.599929 | 5_1:-56394252 | Msa0738630:CDS |
| GTGCTCGGGAACTTTCTACC+AGG | 0.603559 | 5_1:+56395766 | None:intergenic |
| TCTTGCTCAAGAAATGCGAA+CGG | 0.603658 | 5_1:-56394540 | Msa0738630:CDS |
| TAAAGATTATGATTCTGGAT+CGG | 0.607721 | 5_1:-56395062 | Msa0738630:CDS |
| CCAAGATGAAAATCCAAAAG+GGG | 0.608853 | 5_1:+56394762 | None:intergenic |
| TGCTCAAGAAATGCGAACGG+GGG | 0.610733 | 5_1:-56394537 | Msa0738630:CDS |
| GATTAGGAACCCGATGAACA+TGG | 0.611445 | 5_1:-56395545 | Msa0738630:CDS |
| TGAGACTGAAATCATTTGAG+AGG | 0.616878 | 5_1:-56394991 | Msa0738630:CDS |
| CAGTCGAAAATAGACCAAAG+TGG | 0.632679 | 5_1:-56394934 | Msa0738630:CDS |
| AATAGACCAAAGTGGAGTGG+AGG | 0.635594 | 5_1:-56394926 | Msa0738630:CDS |
| ATGGTGACAGATGAAAATCC+TGG | 0.643050 | 5_1:-56395784 | Msa0738630:CDS |
| ATCGGCACAGAAGTACAAGA+TGG | 0.645219 | 5_1:+56395338 | None:intergenic |
| GACACACCTTCGCGACGCAG+AGG | 0.651096 | 5_1:+56394443 | None:intergenic |
| TGATTCCAAAGAAGTCGGCA+AGG | 0.653679 | 5_1:-56395444 | Msa0738630:CDS |
| AGTGTGCAGTCCGAAACCGC+AGG | 0.654614 | 5_1:+56394587 | None:intergenic |
| TCAACATACCAGTCATGACA+AGG | 0.654796 | 5_1:+56395473 | None:intergenic |
| GATTCTCTTTGTATCACCGG+CGG | 0.656253 | 5_1:+56394236 | None:intergenic |
| GAAAATAGACCAAAGTGGAG+TGG | 0.658100 | 5_1:-56394929 | Msa0738630:CDS |
| TATACATATTCCAACACCGA+TGG | 0.667440 | 5_1:+56395144 | None:intergenic |
| GGAGACGAGTTGACACCAAG+AGG | 0.669536 | 5_1:+56394395 | None:intergenic |
| GAATCATAATCTTTACCTAG+AGG | 0.677371 | 5_1:+56395070 | None:intergenic |
| CAAGATGAAAATCCAAAAGG+GGG | 0.678756 | 5_1:+56394763 | None:intergenic |
| CGACGCAGAGGTGAAATCGG+CGG | 0.690132 | 5_1:+56394455 | None:intergenic |
| TGAAGCCTGGTCCATCTGAG+TGG | 0.740360 | 5_1:+56395672 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAAGATCTTTTTTTTTT+TGG | - | chr5_1:56394742-56394761 | Msa0738630:CDS | 10.0% |
| !!! | ATTAAGATCTTTTTTTTTTT+GGG | - | chr5_1:56394743-56394762 | Msa0738630:CDS | 10.0% |
| !! | ATGAAAAAATCAAAAATTGA+AGG | + | chr5_1:56394554-56394573 | None:intergenic | 15.0% |
| !!! | AATTTTTGATTTTTTCATCT+GGG | - | chr5_1:56394556-56394575 | Msa0738630:CDS | 15.0% |
| !!! | TATGTTGCTATTATTAAAAT+TGG | - | chr5_1:56394642-56394661 | Msa0738630:CDS | 15.0% |
| !! | TTTATTAAGATCTATTTACT+AGG | - | chr5_1:56394846-56394865 | Msa0738630:CDS | 15.0% |
| !! | TATAACAAAAACTATTAAGA+AGG | - | chr5_1:56395152-56395171 | Msa0738630:CDS | 15.0% |
| !! | AAAAAATTGTATTTGATGAG+TGG | + | chr5_1:56394239-56394258 | None:intergenic | 20.0% |
| !! | ACTATGTAAAACAAAAGAAA+CGG | + | chr5_1:56394396-56394415 | None:intergenic | 20.0% |
| !!! | CAATTTTTGATTTTTTCATC+TGG | - | chr5_1:56394555-56394574 | Msa0738630:CDS | 20.0% |
| !! | TGCTATTATTAAAATTGGAT+TGG | - | chr5_1:56394647-56394666 | Msa0738630:CDS | 20.0% |
| !!! | ATTAAAATTGGATTGGATAT+TGG | - | chr5_1:56394654-56394673 | Msa0738630:CDS | 20.0% |
| !!! | TTAAAATTGGATTGGATATT+GGG | - | chr5_1:56394655-56394674 | Msa0738630:CDS | 20.0% |
| !! | ATGTGAATTGTGAATTTAAT+TGG | - | chr5_1:56394711-56394730 | Msa0738630:CDS | 20.0% |
| !!! | TTCTATCATTTTTCTACAAT+AGG | + | chr5_1:56395016-56395035 | None:intergenic | 20.0% |
| !!! | GTTTTTGTTATAGTTTTTCT+AGG | + | chr5_1:56395144-56395163 | None:intergenic | 20.0% |
| !! | TGATATATGATAGAACATTA+TGG | - | chr5_1:56395205-56395224 | Msa0738630:CDS | 20.0% |
| !! | TTTATCATCTACAATATGAT+AGG | + | chr5_1:56396844-56396863 | None:intergenic | 20.0% |
| ! | TATCAGCATATTTGATTACT+AGG | - | chr5_1:56394601-56394620 | Msa0738630:CDS | 25.0% |
| ! | ATCAGCATATTTGATTACTA+GGG | - | chr5_1:56394602-56394621 | Msa0738630:CDS | 25.0% |
| !!! | AAGATCTTTTTTTTTTTGGG+TGG | - | chr5_1:56394746-56394765 | Msa0738630:CDS | 25.0% |
| ! | GATAATGCATAAAATATGCA+AGG | + | chr5_1:56394794-56394813 | None:intergenic | 25.0% |
| ! | TAGTGATTAATGAGTTAGAT+AGG | - | chr5_1:56395178-56395197 | Msa0738630:CDS | 25.0% |
| ! | AGTGATTAATGAGTTAGATA+GGG | - | chr5_1:56395179-56395198 | Msa0738630:CDS | 25.0% |
| ! | TATATGATAGAACATTATGG+TGG | - | chr5_1:56395208-56395227 | Msa0738630:CDS | 25.0% |
| ! | AACCTTACAAATCAATAGTA+CGG | + | chr5_1:56395403-56395422 | None:intergenic | 25.0% |
| ! | ACTTCATAACATAATGGTTT+CGG | - | chr5_1:56395447-56395466 | Msa0738630:CDS | 25.0% |
| ! | TAATGGTAAAGATGAAATTG+AGG | - | chr5_1:56395477-56395496 | Msa0738630:CDS | 25.0% |
| ! | ATTGAGGAATGTAACAATAA+TGG | - | chr5_1:56395493-56395512 | Msa0738630:CDS | 25.0% |
| !! | ATATGTATAACTTTTGCGAT+CGG | - | chr5_1:56396222-56396241 | Msa0738630:intron | 25.0% |
| ! | TAAAGATTATGATTCTGGAT+CGG | - | chr5_1:56396290-56396309 | Msa0738630:intron | 25.0% |
| ! | AATTATACCTCTTTCTCATT+TGG | + | chr5_1:56396716-56396735 | None:intergenic | 25.0% |
| AATTGTATTTGATGAGTGGA+TGG | + | chr5_1:56394235-56394254 | None:intergenic | 30.0% | |
| AACAAAAGAAACGGAATGAA+AGG | + | chr5_1:56394387-56394406 | None:intergenic | 30.0% | |
| CAAAACAGAGAAACAAGAAA+TGG | + | chr5_1:56394439-56394458 | None:intergenic | 30.0% | |
| CTCTCAATATAACTCTTACT+TGG | - | chr5_1:56394459-56394478 | Msa0738630:CDS | 30.0% | |
| ! | TTGAAGGCATATGAAGAAAT+GGG | + | chr5_1:56394538-56394557 | None:intergenic | 30.0% |
| ! | ATTGAAGGCATATGAAGAAA+TGG | + | chr5_1:56394539-56394558 | None:intergenic | 30.0% |
| !!! | ATCTTTTTTTTTTTGGGTGG+TGG | - | chr5_1:56394749-56394768 | Msa0738630:CDS | 30.0% |
| TGCATAAAATATGCAAGGTT+GGG | + | chr5_1:56394789-56394808 | None:intergenic | 30.0% | |
| ATGCATAAAATATGCAAGGT+TGG | + | chr5_1:56394790-56394809 | None:intergenic | 30.0% | |
| AATATTAGAGAGTGAGAGTT+GGG | - | chr5_1:56394981-56395000 | Msa0738630:CDS | 30.0% | |
| AAATGATAGAAACTTGACCT+AGG | - | chr5_1:56395025-56395044 | Msa0738630:CDS | 30.0% | |
| AGTAAGGAGAATATATCAGA+TGG | - | chr5_1:56395086-56395105 | Msa0738630:CDS | 30.0% | |
| TGGTGTTTAATCGATGTAAT+CGG | - | chr5_1:56395228-56395247 | Msa0738630:CDS | 30.0% | |
| ACCTTACAAATCAATAGTAC+GGG | + | chr5_1:56395402-56395421 | None:intergenic | 30.0% | |
| GCTTAGACTTCATAACATAA+TGG | - | chr5_1:56395441-56395460 | Msa0738630:CDS | 30.0% | |
| !! | ATGGTTTCGGTTGATAATAA+TGG | - | chr5_1:56395460-56395479 | Msa0738630:CDS | 30.0% |
| TCGAGAACTTGAAATATCTA+TGG | + | chr5_1:56395542-56395561 | None:intergenic | 30.0% | |
| ! | TTGAAGAAGTTGATCCTATT+AGG | + | chr5_1:56395625-56395644 | None:intergenic | 30.0% |
| AGGATCAACTTCTTCAAAAT+CGG | - | chr5_1:56395628-56395647 | Msa0738630:CDS | 30.0% | |
| TGAAGAAGATGACAATAGAA+TGG | - | chr5_1:56395785-56395804 | Msa0738630:CDS | 30.0% | |
| ! | AGATGACAATAGAATGGATT+AGG | - | chr5_1:56395791-56395810 | Msa0738630:CDS | 30.0% |
| ACAAGATGGTAGAATAACTT+TGG | + | chr5_1:56396003-56396022 | None:intergenic | 30.0% | |
| ATTATGTGTTTCCATTCATG+AGG | + | chr5_1:56396099-56396118 | None:intergenic | 30.0% | |
| TCATGAATGGAAACACATAA+TGG | - | chr5_1:56396098-56396117 | Msa0738630:intron | 30.0% | |
| !! | ATAATGGTAGTGGTAATTCT+CGG | - | chr5_1:56396114-56396133 | Msa0738630:intron | 30.0% |
| GAATCATAATCTTTACCTAG+AGG | + | chr5_1:56396285-56396304 | None:intergenic | 30.0% | |
| CTAGGTAAAGATTATGATTC+TGG | - | chr5_1:56396285-56396304 | Msa0738630:intron | 30.0% | |
| !! | TTCTGTACTTTTTGTGCATT+TGG | - | chr5_1:56396495-56396514 | Msa0738630:intron | 30.0% |
| ! | CATACAGAAAAGCATAAAAG+TGG | + | chr5_1:56396568-56396587 | None:intergenic | 30.0% |
| ! | CACTTTTATGCTTTTCTGTA+TGG | - | chr5_1:56396566-56396585 | Msa0738630:intron | 30.0% |
| !!! | GGGATTGTTCTATGTTTTTT+CGG | - | chr5_1:56396663-56396682 | Msa0738630:intron | 30.0% |
| ! | AAGTTCTAGCAGTTTCTTTA+TGG | - | chr5_1:56397007-56397026 | Msa0738630:five_prime_UTR | 30.0% |
| ! | TTCAGAAAGCTCTTCTTTTA+CGG | + | chr5_1:56397063-56397082 | None:intergenic | 30.0% |
| CTCAGAAGAACAAGAAGAAA+AGG | + | chr5_1:56394291-56394310 | None:intergenic | 35.0% | |
| !!! | ATTCGCTGATTTTTAGCATG+TGG | + | chr5_1:56394342-56394361 | None:intergenic | 35.0% |
| GGAATGAAAGGAAACAAGAA+TGG | + | chr5_1:56394375-56394394 | None:intergenic | 35.0% | |
| !!! | CTCTTGTTTTCTCAGTTCTT+AGG | - | chr5_1:56394497-56394516 | Msa0738630:CDS | 35.0% |
| GCATAAAATATGCAAGGTTG+GGG | + | chr5_1:56394788-56394807 | None:intergenic | 35.0% | |
| CAATATTAGAGAGTGAGAGT+TGG | - | chr5_1:56394980-56394999 | Msa0738630:CDS | 35.0% | |
| ATATTAGAGAGTGAGAGTTG+GGG | - | chr5_1:56394982-56395001 | Msa0738630:CDS | 35.0% | |
| AAACTTGACCTAGGTGATTT+GGG | - | chr5_1:56395034-56395053 | Msa0738630:CDS | 35.0% | |
| !! | ACCCGTACTATTGATTTGTA+AGG | - | chr5_1:56395398-56395417 | Msa0738630:CDS | 35.0% |
| ! | CATTGAGTGCTATTCCTAAT+AGG | - | chr5_1:56395608-56395627 | Msa0738630:CDS | 35.0% |
| TCTCTTAAGCTATGTGAACT+CGG | + | chr5_1:56395721-56395740 | None:intergenic | 35.0% | |
| ! | TGTTTTCAAAGAAACTCGAC+TGG | - | chr5_1:56395755-56395774 | Msa0738630:CDS | 35.0% |
| ! | GTTTTCAAAGAAACTCGACT+GGG | - | chr5_1:56395756-56395775 | Msa0738630:CDS | 35.0% |
| TTCTGTGATTCCAAAGAAGT+CGG | - | chr5_1:56395903-56395922 | Msa0738630:exon | 35.0% | |
| ! | CGATATCTTTTGGATTCCAT+CGG | + | chr5_1:56396035-56396054 | None:intergenic | 35.0% |
| ! | CTAAGTTTGGCGATATCTTT+TGG | + | chr5_1:56396045-56396064 | None:intergenic | 35.0% |
| AGATATCGCCAAACTTAGAA+AGG | - | chr5_1:56396047-56396066 | Msa0738630:intron | 35.0% | |
| GAACTTATAAGCCTCATGAA+TGG | - | chr5_1:56396085-56396104 | Msa0738630:intron | 35.0% | |
| ATGGAAACACATAATGGTAG+TGG | - | chr5_1:56396104-56396123 | Msa0738630:intron | 35.0% | |
| TTTGCTCAATATGCACTTTG+TGG | - | chr5_1:56396150-56396169 | Msa0738630:intron | 35.0% | |
| CACTTTGTGGTCTAAACTTA+GGG | - | chr5_1:56396163-56396182 | Msa0738630:intron | 35.0% | |
| TATACATATTCCAACACCGA+TGG | + | chr5_1:56396211-56396230 | None:intergenic | 35.0% | |
| TATACAATCCTTAGTCCTCT+AGG | - | chr5_1:56396267-56396286 | Msa0738630:intron | 35.0% | |
| AATCTTTACCTAGAGGACTA+AGG | + | chr5_1:56396278-56396297 | None:intergenic | 35.0% | |
| TGAGACTGAAATCATTTGAG+AGG | - | chr5_1:56396361-56396380 | Msa0738630:intron | 35.0% | |
| TGGAGGAATACTTGACATTT+GGG | - | chr5_1:56396443-56396462 | Msa0738630:intron | 35.0% | |
| !! | GTACTTTTTGTGCATTTGGT+TGG | - | chr5_1:56396499-56396518 | Msa0738630:intron | 35.0% |
| TTGTGCATTTGGTTGGAATA+TGG | - | chr5_1:56396506-56396525 | Msa0738630:intron | 35.0% | |
| CAAGATGAAAATCCAAAAGG+GGG | + | chr5_1:56396592-56396611 | None:intergenic | 35.0% | |
| CCAAGATGAAAATCCAAAAG+GGG | + | chr5_1:56396593-56396612 | None:intergenic | 35.0% | |
| GCCAAGATGAAAATCCAAAA+GGG | + | chr5_1:56396594-56396613 | None:intergenic | 35.0% | |
| AGCCAAGATGAAAATCCAAA+AGG | + | chr5_1:56396595-56396614 | None:intergenic | 35.0% | |
| ATATTGAGGATGACACTGTT+AGG | - | chr5_1:56396622-56396641 | Msa0738630:intron | 35.0% | |
| !!! | TGTTTTTTCGGTATGCTCTA+TGG | - | chr5_1:56396675-56396694 | Msa0738630:intron | 35.0% |
| CCTACTTATGACTTCTGTTT+CGG | - | chr5_1:56396738-56396757 | Msa0738630:intron | 35.0% | |
| AAGAAACTGCTAGAACTTAG+AGG | + | chr5_1:56397005-56397024 | None:intergenic | 35.0% | |
| ATGGAATATCATAGTCCAGA+TGG | - | chr5_1:56397026-56397045 | Msa0738630:five_prime_UTR | 35.0% | |
| ! | TCTTCTTTTACGGAAGATAG+TGG | + | chr5_1:56397053-56397072 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTTGGGTGGTGGC+CGG | - | chr5_1:56394753-56394772 | Msa0738630:CDS | 40.0% |
| !! | TGAGCTTAGCTAAGTTGGTT+TGG | + | chr5_1:56394816-56394835 | None:intergenic | 40.0% |
| CAGAGATGAAGATGTTGTGT+TGG | - | chr5_1:56394919-56394938 | Msa0738630:CDS | 40.0% | |
| GAAACTTGACCTAGGTGATT+TGG | - | chr5_1:56395033-56395052 | Msa0738630:CDS | 40.0% | |
| !! | GACGTGTTGATTCTGTAGTA+AGG | - | chr5_1:56395070-56395089 | Msa0738630:CDS | 40.0% |
| CAACCTTTATCTCGCTATGT+GGG | + | chr5_1:56395255-56395274 | None:intergenic | 40.0% | |
| GGTACAGAACAAATACTGCA+AGG | + | chr5_1:56395381-56395400 | None:intergenic | 40.0% | |
| ! | TTCAAGTTCTCGAAGAGCAA+TGG | - | chr5_1:56395549-56395568 | Msa0738630:CDS | 40.0% |
| ATGGTGACAGATGAAAATCC+TGG | - | chr5_1:56395568-56395587 | Msa0738630:CDS | 40.0% | |
| GCATAAGATCCACGCAAAAA+GGG | + | chr5_1:56395833-56395852 | None:intergenic | 40.0% | |
| !! | ATCTTATGCGTTGCTGTTTC+AGG | - | chr5_1:56395844-56395863 | Msa0738630:CDS | 40.0% |
| TCAACATACCAGTCATGACA+AGG | + | chr5_1:56395882-56395901 | None:intergenic | 40.0% | |
| GCAGTACTCCTTTCTAAGTT+TGG | + | chr5_1:56396058-56396077 | None:intergenic | 40.0% | |
| !! | AGAAAGGAGTACTGCAAGAA+TGG | - | chr5_1:56396063-56396082 | Msa0738630:intron | 40.0% |
| GCACTTTGTGGTCTAAACTT+AGG | - | chr5_1:56396162-56396181 | Msa0738630:intron | 40.0% | |
| GTATATAGACCAGCAATTGC+AGG | + | chr5_1:56396252-56396271 | None:intergenic | 40.0% | |
| CAGTCGAAAATAGACCAAAG+TGG | - | chr5_1:56396418-56396437 | Msa0738630:intron | 40.0% | |
| GAAAATAGACCAAAGTGGAG+TGG | - | chr5_1:56396423-56396442 | Msa0738630:intron | 40.0% | |
| GTGGAGGAATACTTGACATT+TGG | - | chr5_1:56396442-56396461 | Msa0738630:intron | 40.0% | |
| AATATGGAGAGACTTGGCTT+TGG | - | chr5_1:56396522-56396541 | Msa0738630:intron | 40.0% | |
| ! | CCCCTTTTGGATTTTCATCT+TGG | - | chr5_1:56396590-56396609 | Msa0738630:intron | 40.0% |
| CTTGGCTGCTGTTAATATTG+AGG | - | chr5_1:56396608-56396627 | Msa0738630:intron | 40.0% | |
| ACTGTTAGGCAATGTCTAGT+AGG | - | chr5_1:56396636-56396655 | Msa0738630:intron | 40.0% | |
| !! | TTTTTCGGTATGCTCTATGG+TGG | - | chr5_1:56396678-56396697 | Msa0738630:intron | 40.0% |
| ! | GTATGCTCTATGGTGGTTTT+TGG | - | chr5_1:56396685-56396704 | Msa0738630:intron | 40.0% |
| CCGAAACAGAAGTCATAAGT+AGG | + | chr5_1:56396741-56396760 | None:intergenic | 40.0% | |
| CACTTTGGCTATTCTGTTGT+TGG | - | chr5_1:56396784-56396803 | Msa0738630:intron | 40.0% | |
| TCTTGCTCAAGAAATGCGAA+CGG | - | chr5_1:56396812-56396831 | Msa0738630:intron | 40.0% | |
| GTGTGTCATCAACCAAATCT+GGG | - | chr5_1:56396925-56396944 | Msa0738630:five_prime_UTR | 40.0% | |
| CTTGACGGTTTGAAAGTAGA+AGG | + | chr5_1:56396981-56397000 | None:intergenic | 40.0% | |
| CTAGAACTTAGAGGACTTGA+CGG | + | chr5_1:56396996-56397015 | None:intergenic | 40.0% | |
| GGAGATTCTCTTTGTATCAC+CGG | + | chr5_1:56397122-56397141 | None:intergenic | 40.0% | |
| !!! | TTTTTTTTTGGGTGGTGGCC+GGG | - | chr5_1:56394754-56394773 | Msa0738630:CDS | 45.0% |
| AAGGTTGGGGTTCAAAATCC+CGG | + | chr5_1:56394775-56394794 | None:intergenic | 45.0% | |
| TCTACATGCCCAAATCACCT+AGG | + | chr5_1:56395045-56395064 | None:intergenic | 45.0% | |
| GAGAGTAGACGAATCACTAG+AGG | - | chr5_1:56395108-56395127 | Msa0738630:CDS | 45.0% | |
| CCAACCTTTATCTCGCTATG+TGG | + | chr5_1:56395256-56395275 | None:intergenic | 45.0% | |
| CCACATAGCGAGATAAAGGT+TGG | - | chr5_1:56395253-56395272 | Msa0738630:CDS | 45.0% | |
| GAATAGCACTCAATGTGCTC+GGG | + | chr5_1:56395603-56395622 | None:intergenic | 45.0% | |
| GGAATAGCACTCAATGTGCT+CGG | + | chr5_1:56395604-56395623 | None:intergenic | 45.0% | |
| AGTGGCAAGACGCTTGAATT+TGG | + | chr5_1:56395665-56395684 | None:intergenic | 45.0% | |
| AAGCTATGTGAACTCGGAGA+AGG | + | chr5_1:56395715-56395734 | None:intergenic | 45.0% | |
| GATTAGGAACCCGATGAACA+TGG | - | chr5_1:56395807-56395826 | Msa0738630:CDS | 45.0% | |
| CAAAAAGGGCCATGTTCATC+GGG | + | chr5_1:56395819-56395838 | None:intergenic | 45.0% | |
| GCAAAAAGGGCCATGTTCAT+CGG | + | chr5_1:56395820-56395839 | None:intergenic | 45.0% | |
| CGCATAAGATCCACGCAAAA+AGG | + | chr5_1:56395834-56395853 | None:intergenic | 45.0% | |
| !! | TTATGCGTTGCTGTTTCAGG+TGG | - | chr5_1:56395847-56395866 | Msa0738630:CDS | 45.0% |
| ATCCTGTTCCTTGTCATGAC+TGG | - | chr5_1:56395871-56395890 | Msa0738630:CDS | 45.0% | |
| TACCAGTCATGACAAGGAAC+AGG | + | chr5_1:56395876-56395895 | None:intergenic | 45.0% | |
| TGATTCCAAAGAAGTCGGCA+AGG | - | chr5_1:56395908-56395927 | Msa0738630:exon | 45.0% | |
| ! | ATCGGCACAGAAGTACAAGA+TGG | + | chr5_1:56396017-56396036 | None:intergenic | 45.0% |
| ATCTTGTACTTCTGTGCCGA+TGG | - | chr5_1:56396016-56396035 | Msa0738630:intron | 45.0% | |
| GTATAAAAGATCTGAGCGCC+CGG | - | chr5_1:56396185-56396204 | Msa0738630:intron | 45.0% | |
| AATAGACCAAAGTGGAGTGG+AGG | - | chr5_1:56396426-56396445 | Msa0738630:intron | 45.0% | |
| AGTATTCCTCCACTCCACTT+TGG | + | chr5_1:56396435-56396454 | None:intergenic | 45.0% | |
| GGTTGGAATATGGAGAGACT+TGG | - | chr5_1:56396516-56396535 | Msa0738630:intron | 45.0% | |
| ! | TTTTCTGTATGGCCCCCTTT+TGG | - | chr5_1:56396577-56396596 | Msa0738630:intron | 45.0% |
| !! | TGCTCTATGGTGGTTTTTGG+AGG | - | chr5_1:56396688-56396707 | Msa0738630:intron | 45.0% |
| GGAGGATCCAAATGAGAAAG+AGG | - | chr5_1:56396706-56396725 | Msa0738630:intron | 45.0% | |
| CTTGCTCAAGAAATGCGAAC+GGG | - | chr5_1:56396813-56396832 | Msa0738630:intron | 45.0% | |
| TTGCTCAAGAAATGCGAACG+GGG | - | chr5_1:56396814-56396833 | Msa0738630:intron | 45.0% | |
| GGTGTGTCATCAACCAAATC+TGG | - | chr5_1:56396924-56396943 | Msa0738630:five_prime_UTR | 45.0% | |
| AGGAGAACTTGTCCCAGATT+TGG | + | chr5_1:56396940-56396959 | None:intergenic | 45.0% | |
| GATTCTCTTTGTATCACCGG+CGG | + | chr5_1:56397119-56397138 | None:intergenic | 45.0% | |
| GCTCGTGAGCTTAGCTAAGT+TGG | + | chr5_1:56394821-56394840 | None:intergenic | 50.0% | |
| AGACGAATCACTAGAGGCAG+AGG | - | chr5_1:56395114-56395133 | Msa0738630:CDS | 50.0% | |
| GGTCCCACATAGCGAGATAA+AGG | - | chr5_1:56395249-56395268 | Msa0738630:CDS | 50.0% | |
| AAGGCACAGATTGTGAAGCC+TGG | + | chr5_1:56395696-56395715 | None:intergenic | 50.0% | |
| ! | TGAACATGGCCCTTTTTGCG+TGG | - | chr5_1:56395821-56395840 | Msa0738630:CDS | 50.0% |
| !! | GCATTCCTTGCCGACTTCTT+TGG | + | chr5_1:56395916-56395935 | None:intergenic | 50.0% |
| AGAAGTCGGCAAGGAATGCA+TGG | - | chr5_1:56395917-56395936 | Msa0738630:five_prime_UTR | 50.0% | |
| ATATTCCAACACCGATGGCC+GGG | + | chr5_1:56396206-56396225 | None:intergenic | 50.0% | |
| CATATTCCAACACCGATGGC+CGG | + | chr5_1:56396207-56396226 | None:intergenic | 50.0% | |
| TGGATCGGACGAAGAATCAC+AGG | - | chr5_1:56396305-56396324 | Msa0738630:intron | 50.0% | |
| AGGCAATGTCTAGTAGGTGC+TGG | - | chr5_1:56396642-56396661 | Msa0738630:intron | 50.0% | |
| GGCAATGTCTAGTAGGTGCT+GGG | - | chr5_1:56396643-56396662 | Msa0738630:intron | 50.0% | |
| TGCTCAAGAAATGCGAACGG+GGG | - | chr5_1:56396815-56396834 | Msa0738630:intron | 50.0% | |
| ! | TCTGGGACAAGTTCTCCTCT+TGG | - | chr5_1:56396942-56396961 | Msa0738630:five_prime_UTR | 50.0% |
| !! | ACGGAAGATAGTGGACCATC+TGG | + | chr5_1:56397044-56397063 | None:intergenic | 50.0% |
| AATGATTCCACCAACTCCGC+CGG | - | chr5_1:56397100-56397119 | Msa0738630:five_prime_UTR | 50.0% | |
| GTGCTCGGGAACTTTCTACC+AGG | + | chr5_1:56395589-56395608 | None:intergenic | 55.0% | |
| CAAGCGTCTTGCCACTCAGA+TGG | - | chr5_1:56395669-56395688 | Msa0738630:CDS | 55.0% | |
| TCTTGCCACTCAGATGGACC+AGG | - | chr5_1:56395675-56395694 | Msa0738630:CDS | 55.0% | |
| TGAAGCCTGGTCCATCTGAG+TGG | + | chr5_1:56395683-56395702 | None:intergenic | 55.0% | |
| ATCGGTGCACCTGCAATTGC+TGG | - | chr5_1:56396240-56396259 | Msa0738630:intron | 55.0% | |
| CTTCTGTTTCGGCAAGCCTG+CGG | - | chr5_1:56396749-56396768 | Msa0738630:intron | 55.0% | |
| TTTCGGCAAGCCTGCGGTTT+CGG | - | chr5_1:56396755-56396774 | Msa0738630:intron | 55.0% | |
| CGGTTTCGGACTGCACACTT+TGG | - | chr5_1:56396769-56396788 | Msa0738630:intron | 55.0% | |
| TCGCGACGCAGAGGTGAAAT+CGG | + | chr5_1:56396903-56396922 | None:intergenic | 55.0% | |
| ATTTCACCTCTGCGTCGCGA+AGG | - | chr5_1:56396903-56396922 | Msa0738630:five_prime_UTR | 55.0% | |
| ! | GGAGACGAGTTGACACCAAG+AGG | + | chr5_1:56396960-56396979 | None:intergenic | 55.0% |
| CTTTGTATCACCGGCGGAGT+TGG | + | chr5_1:56397113-56397132 | None:intergenic | 55.0% | |
| AGTGTGCAGTCCGAAACCGC+AGG | + | chr5_1:56396768-56396787 | None:intergenic | 60.0% | |
| GCAGAGGTGAAATCGGCGGT+TGG | + | chr5_1:56396896-56396915 | None:intergenic | 60.0% | |
| CGACGCAGAGGTGAAATCGG+CGG | + | chr5_1:56396900-56396919 | None:intergenic | 60.0% | |
| TGTATCACCGGCGGAGTTGG+TGG | + | chr5_1:56397110-56397129 | None:intergenic | 60.0% | |
| AGATCTGAGCGCCCGGCCAT+CGG | - | chr5_1:56396192-56396211 | Msa0738630:intron | 65.0% | |
| GACACACCTTCGCGACGCAG+AGG | + | chr5_1:56396912-56396931 | None:intergenic | 65.0% | |
| GAGCGCCCGGCCATCGGTGT+TGG | - | chr5_1:56396198-56396217 | Msa0738630:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 56394232 | 56397142 | 56394232 | ID=Msa0738630;Name=Msa0738630 |
| chr5_1 | mRNA | 56394232 | 56397142 | 56394232 | ID=Msa0738630-mRNA-1;Parent=Msa0738630;Name=Msa0738630-mRNA-1;_AED=0.10;_eAED=0.10;_QI=309|0|0.5|1|0|0|2|0|561 |
| chr5_1 | exon | 56394232 | 56395936 | 56394232 | ID=Msa0738630-mRNA-1:exon:16024;Parent=Msa0738630-mRNA-1 |
| chr5_1 | exon | 56396856 | 56397142 | 56396856 | ID=Msa0738630-mRNA-1:exon:16023;Parent=Msa0738630-mRNA-1 |
| chr5_1 | five_prime_UTR | 56396856 | 56397142 | 56396856 | ID=Msa0738630-mRNA-1:five_prime_utr;Parent=Msa0738630-mRNA-1 |
| chr5_1 | five_prime_UTR | 56395915 | 56395936 | 56395915 | ID=Msa0738630-mRNA-1:five_prime_utr;Parent=Msa0738630-mRNA-1 |
| chr5_1 | CDS | 56394232 | 56395914 | 56394232 | ID=Msa0738630-mRNA-1:cds;Parent=Msa0738630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
