AlfalfaGEDB | Msa0783760

M. sativa cultivar zhongmu-4 / Msa0783760

KEGG: -
GO: -
PFAM: PF11204.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0783760	G7K7B5	98.574	561	8	0	13	573	1	561	0.0	1159

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012240	Msa0783760	-0.815013	1.149250e-51	-8.615850e-47
Msa0027260	Msa0783760	-0.801911	7.199846e-49	-8.615850e-47
Msa0103000	Msa0783760	-0.800880	1.171291e-48	-8.615850e-47
Msa0140570	Msa0783760	-0.806156	9.430576e-50	-8.615850e-47
Msa0173740	Msa0783760	-0.801651	8.141744e-49	-8.615850e-47
Msa0173820	Msa0783760	-0.807173	5.751132e-50	-8.615850e-47
Msa0173830	Msa0783760	-0.817313	3.518971e-52	-8.615850e-47
Msa0174730	Msa0783760	-0.801314	9.544499e-49	-8.615850e-47
Msa0187930	Msa0783760	-0.800278	1.553583e-48	-8.615850e-47
Msa0193120	Msa0783760	-0.805386	1.368484e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0783760	MtrunA17_Chr5g0437931	98.417	379	6	0	13	391	1	379	0.0	782
Msa0783760	MtrunA17_Chr3g0114311	63.186	565	141	6	13	573	1	502	0.0	654
Msa0783760	MtrunA17_Chr3g0114321	66.667	483	133	5	13	491	1	459	0.0	632
Msa0783760	MtrunA17_Chr5g0437921	98.684	152	2	0	422	573	1	152	2.82e-106	315

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0783760	AT3G10980.1	59.298	570	206	10	17	572	6	563	0.0	631
Msa0783760	AT5G05350.1	56.929	534	199	7	42	572	20	525	0.0	598

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Find 118 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAACTGCTAGAACTTAG+AGG	0.389392	5_2:+67922580	None:intergenic
AAGCTATGTGAACTCGGAGA+AGG	0.576858	5_2:+67923870	None:intergenic
AAGGCACAGATTGTGAAGCC+TGG	0.561142	5_2:+67923889	None:intergenic
AAGTTCTAGCAGTTTCTTTA+TGG	0.127897	5_2:-67922575	Msa0783760:CDS
AATAGACCAAAGTGGAGTGG+AGG	0.635594	5_2:-67923156	Msa0783760:CDS
AATATGGAGAGACTTGGCTT+TGG	0.469184	5_2:-67923060	Msa0783760:CDS
AATCTTTACCTAGAGGACTA+AGG	0.482009	5_2:+67923307	None:intergenic
AATGATTCCACCAACTCCGC+CGG	0.599929	5_2:-67922482	Msa0783760:CDS
AATTATACCTCTTTCTCATT+TGG	0.282202	5_2:+67922869	None:intergenic
ACAAGATGGTAGAATAACTT+TGG	0.464879	5_2:+67923582	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAACAGAGAAACAAGAAA+TGG	+	chr5_2:67922487-67922506	None:intergenic	30.0%
CTCTCAATATAACTCTTACT+TGG	-	chr5_2:67922507-67922526	Msa0783760:CDS	30.0%
TGCATAAAATATGCAAGGTT+GGG	+	chr5_2:67922842-67922861	None:intergenic	30.0%
ATGCATAAAATATGCAAGGT+TGG	+	chr5_2:67922843-67922862	None:intergenic	30.0%
AATATTAGAGAGTGAGAGTT+GGG	-	chr5_2:67923034-67923053	Msa0783760:CDS	30.0%
AAATGATAGAAACTTGACCT+AGG	-	chr5_2:67923078-67923097	Msa0783760:CDS	30.0%
AGTAAGGAGAATATATCAGA+TGG	-	chr5_2:67923139-67923158	Msa0783760:CDS	30.0%
TGGTGTTTAATCGATGTAAT+CGG	-	chr5_2:67923281-67923300	Msa0783760:CDS	30.0%
ACCTTACAAATCAATAGTAC+GGG	+	chr5_2:67923458-67923477	None:intergenic	30.0%
GCTTAGACTTCATAACATAA+TGG	-	chr5_2:67923497-67923516	Msa0783760:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	67922459	67925201	67922459	ID=Msa0783760;Name=Msa0783760
chr5_2	mRNA	67922459	67925201	67922459	ID=Msa0783760-mRNA-1;Parent=Msa0783760;Name=Msa0783760-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0\|0\|0\|1\|0\|0\|3\|0\|573
chr5_2	exon	67925195	67925201	67925195	ID=Msa0783760-mRNA-1:exon:20384;Parent=Msa0783760-mRNA-1
chr5_2	exon	67925094	67925100	67925094	ID=Msa0783760-mRNA-1:exon:20383;Parent=Msa0783760-mRNA-1
chr5_2	exon	67922459	67924166	67922459	ID=Msa0783760-mRNA-1:exon:20382;Parent=Msa0783760-mRNA-1
chr5_2	CDS	67925195	67925201	67925195	ID=Msa0783760-mRNA-1:cds;Parent=Msa0783760-mRNA-1
chr5_2	CDS	67925094	67925100	67925094	ID=Msa0783760-mRNA-1:cds;Parent=Msa0783760-mRNA-1
chr5_2	CDS	67922459	67924166	67922459	ID=Msa0783760-mRNA-1:cds;Parent=Msa0783760-mRNA-1

Gene Sequence

>Msa0783760

ATGGTTTTTCTTAGAAAGCTTAGACTTCATAACATAATGGTTTCGGTTGATAATAATGGTAAAGATGAAATTGAGGAATGTAACAATAATGGAAGTAAAGCAAATGAGTTTACTTCCATAGATATTTCAAGTTCTCGAAGAGCAATGGTGACAGATGAAAATCCTGGTAGAAAGTTCCCGAGCACATTGAGTGCTATTCCTAATAGGATCAACTTCTTCAAAATCGGTTCTGCGTCTGCCAAATTCAAGCGTCTTGCCACTCAGATGGACCAGGCTTCACAATCTGTGCCTTCTCCGAGTTCACATAGCTTAAGAGAACGCTTCAAGCACATGTTTTCAAAGAAACTCGACTGGGATTCGATGAAGAAGATGACAATAGAATGGATTAGGAACCCGATGAACATGGCCCTTTTTGCGTGGATCTTATGCGTTGCTGTTTCAGGTGGAATCCTGTTCCTTGTCATGACTGGTATGTTGAATTCTGTGATTCCAAAGAAGTCGGCAAGGAATGCATGGTTTGAAGTAAACAATCAAATACTCAATGCTCTGTTTACACTGATGTGTTTGTACAAGCATCCAAAGTTATTCTACCATCTTGTACTTCTGTGCCGATGGAATCCAAAAGATATCGCCAAACTTAGAAAGGAGTACTGCAAGAATGGAACTTATAAGCCTCATGAATGGAAACACATAATGGTAGTGGTAATTCTCGGTCATGTGAACTGTTTTGCTCAATATGCACTTTGTGGTCTAAACTTAGGGTATAAAAGATCTGAGCGCCCGGCCATCGGTGTTGGAATATGTATAACTTTTGCGATCGGTGCACCTGCAATTGCTGGTCTATATACAATCCTTAGTCCTCTAGGTAAAGATTATGATTCTGGATCGGACGAAGAATCACAGGTTCAAATTGCTGCTGCTCAAAAGATAGAGCAGATGAGACTGAAATCATTTGAGAGGAGATATTCATTTGCAACAAAAAATCAACTAAGAACAGTCGAAAATAGACCAAAGTGGAGTGGAGGAATACTTGACATTTGGGACGATATTTCTCAAGCATATCTATCACTTTTCTGTACTTTTTGTGCATTTGGTTGGAATATGGAGAGACTTGGCTTTGGAAACATGTATGTTCACATTGCCACTTTTATGCTTTTCTGTATGGCCCCCTTTTGGATTTTCATCTTGGCTGCTGTTAATATTGAGGATGACACTGTTAGGCAATGTCTAGTAGGTGCTGGGATTGTTCTATGTTTTTTCGGTATGCTCTATGGTGGTTTTTGGAGGATCCAAATGAGAAAGAGGTATAATTTGCCTACTTATGACTTCTGTTTCGGCAAGCCTGCGGTTTCGGACTGCACACTTTGGCTATTCTGTTGTTGGTGCTCTCTTGCTCAAGAAATGCGAACGGGGGATGCCTATCATATTGTAGATGATAAATTCTTCAGCAAAGAAATTAACACTGTTGACCAACCGCCGATTTCACCTCTGCGTCGCGAAGGTGTGTCATCAACCAAATCTGGGACAAGTTCTCCTCTTGGTGTCAACTCGTCTCCTTCTACTTTCAAACCGTCAAGTCCTCTAAGTTCTAGCAGTTTCTTTATGGAATATCATAGTCCAGATGGTCCACTATCTTCCGTAAAAGAAGAGCTTTCTGAAAAAGATAAAGATGTAACAATGATTCCACCAACTCCGCCGGTGATACAAAGAGAATCTCCTTAG

Protein sequence

>Msa0783760

MVFLRKLRLHNIMVSVDNNGKDEIEECNNNGSKANEFTSIDISSSRRAMVTDENPGRKFPSTLSAIPNRINFFKIGSASAKFKRLATQMDQASQSVPSPSSHSLRERFKHMFSKKLDWDSMKKMTIEWIRNPMNMALFAWILCVAVSGGILFLVMTGMLNSVIPKKSARNAWFEVNNQILNALFTLMCLYKHPKLFYHLVLLCRWNPKDIAKLRKEYCKNGTYKPHEWKHIMVVVILGHVNCFAQYALCGLNLGYKRSERPAIGVGICITFAIGAPAIAGLYTILSPLGKDYDSGSDEESQVQIAAAQKIEQMRLKSFERRYSFATKNQLRTVENRPKWSGGILDIWDDISQAYLSLFCTFCAFGWNMERLGFGNMYVHIATFMLFCMAPFWIFILAAVNIEDDTVRQCLVGAGIVLCFFGMLYGGFWRIQMRKRYNLPTYDFCFGKPAVSDCTLWLFCCWCSLAQEMRTGDAYHIVDDKFFSKEINTVDQPPISPLRREGVSSTKSGTSSPLGVNSSPSTFKPSSPLSSSSFFMEYHSPDGPLSSVKEELSEKDKDVTMIPPTPPVIQRESP*