Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139320 | XP_003607403.1 | 90.769 | 195 | 1 | 1 | 1 | 178 | 1 | 195 | 1.07e-123 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139320 | sp|P61210|ARF1_LOCMI | 55.618 | 178 | 62 | 1 | 1 | 161 | 1 | 178 | 3.05e-68 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139320 | G7JRR7 | 90.769 | 195 | 1 | 1 | 1 | 178 | 1 | 195 | 5.12e-124 | 356 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0139320 | 0.823069 | 1.689092e-53 | -8.615850e-47 |
| Msa0009760 | Msa0139320 | 0.817366 | 3.422746e-52 | -8.615850e-47 |
| Msa0027890 | Msa0139320 | 0.803420 | 3.516378e-49 | -8.615850e-47 |
| Msa0046740 | Msa0139320 | 0.806899 | 6.574719e-50 | -8.615850e-47 |
| Msa0064350 | Msa0139320 | 0.814531 | 1.469262e-51 | -8.615850e-47 |
| Msa0069330 | Msa0139320 | 0.805058 | 1.603049e-49 | -8.615850e-47 |
| Msa0074750 | Msa0139320 | 0.828468 | 8.840108e-55 | -8.615850e-47 |
| Msa0075170 | Msa0139320 | 0.813539 | 2.431494e-51 | -8.615850e-47 |
| Msa0081650 | Msa0139320 | 0.814172 | 1.763739e-51 | -8.615850e-47 |
| Msa0091610 | Msa0139320 | 0.811822 | 5.776366e-51 | -8.615850e-47 |
| Msa0104550 | Msa0139320 | 0.803552 | 3.300683e-49 | -8.615850e-47 |
| Msa0123560 | Msa0139320 | 0.818134 | 2.296232e-52 | -8.615850e-47 |
| Msa0127850 | Msa0139320 | 0.802705 | 4.942550e-49 | -8.615850e-47 |
| Msa0139320 | Msa0159420 | 0.806701 | 7.238738e-50 | -8.615850e-47 |
| Msa0139320 | Msa0195630 | 0.805808 | 1.116120e-49 | -8.615850e-47 |
| Msa0139320 | Msa0217670 | 0.803578 | 3.261218e-49 | -8.615850e-47 |
| Msa0139320 | Msa0237410 | 0.806539 | 7.833578e-50 | -8.615850e-47 |
| Msa0139320 | Msa0244980 | 0.808234 | 3.423638e-50 | -8.615850e-47 |
| Msa0139320 | Msa0269470 | 0.805989 | 1.022444e-49 | -8.615850e-47 |
| Msa0139320 | Msa0311700 | 0.811039 | 8.546516e-51 | -8.615850e-47 |
| Msa0139320 | Msa0389510 | 0.880586 | 4.859495e-70 | -8.615850e-47 |
| Msa0139320 | Msa0484740 | 0.814022 | 1.903309e-51 | -8.615850e-47 |
| Msa0139320 | Msa0524500 | 0.811691 | 6.168180e-51 | -8.615850e-47 |
| Msa0139320 | Msa0552810 | 0.810810 | 9.580009e-51 | -8.615850e-47 |
| Msa0139320 | Msa0580230 | 0.896328 | 4.100128e-76 | -8.615850e-47 |
| Msa0139320 | Msa0580280 | 0.908892 | 1.039390e-81 | -8.615850e-47 |
| Msa0139320 | Msa0613920 | 0.832862 | 7.418950e-56 | -8.615850e-47 |
| Msa0139320 | Msa0614510 | 0.814414 | 1.559575e-51 | -8.615850e-47 |
| Msa0139320 | Msa0620230 | 0.814639 | 1.390355e-51 | -8.615850e-47 |
| Msa0139320 | Msa0628420 | 0.807384 | 5.190444e-50 | -8.615850e-47 |
| Msa0139320 | Msa0662630 | 0.811338 | 7.358836e-51 | -8.615850e-47 |
| Msa0139320 | Msa0690770 | 0.829665 | 4.533931e-55 | -8.615850e-47 |
| Msa0139320 | Msa0697080 | 0.826779 | 2.249665e-54 | -8.615850e-47 |
| Msa0139320 | Msa0740640 | 0.806197 | 9.244790e-50 | -8.615850e-47 |
| Msa0139320 | Msa0880450 | 0.818139 | 2.290215e-52 | -8.615850e-47 |
| Msa0139320 | Msa0880470 | 0.822332 | 2.506308e-53 | -8.615850e-47 |
| Msa0139320 | Msa1150710 | 0.811279 | 7.579313e-51 | -8.615850e-47 |
| Msa0139320 | Msa1250530 | 0.804430 | 2.168196e-49 | -8.615850e-47 |
| Msa0139320 | Msa1251160 | 0.830855 | 2.321790e-55 | -8.615850e-47 |
| Msa0139320 | Msa1256470 | 0.828797 | 7.362289e-55 | -8.615850e-47 |
| Msa0139320 | Msa1362420 | 0.810502 | 1.116490e-50 | -8.615850e-47 |
| Msa0139320 | Msa1376650 | 0.809503 | 1.832015e-50 | -8.615850e-47 |
| Msa0139320 | Msa1422580 | 0.804672 | 1.930463e-49 | -8.615850e-47 |
| Msa0139320 | Msa1462290 | 0.823111 | 1.651803e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139320 | MtrunA17_Chr4g0039591 | 90.769 | 195 | 1 | 1 | 1 | 178 | 1 | 195 | 9.86e-128 | 356 |
| Msa0139320 | MtrunA17_Chr5g0395631 | 80.000 | 195 | 17 | 2 | 1 | 178 | 1 | 190 | 1.62e-111 | 315 |
| Msa0139320 | MtrunA17_Chr5g0395641 | 69.681 | 188 | 38 | 2 | 1 | 169 | 1 | 188 | 3.22e-91 | 264 |
| Msa0139320 | MtrunA17_Chr7g0270301 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 5.11e-66 | 200 |
| Msa0139320 | MtrunA17_Chr1g0194261 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 5.83e-66 | 199 |
| Msa0139320 | MtrunA17_Chr6g0450081 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 8.64e-66 | 199 |
| Msa0139320 | MtrunA17_Chr5g0413451 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 1.14e-65 | 199 |
| Msa0139320 | MtrunA17_Chr5g0413441 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 1.14e-65 | 199 |
| Msa0139320 | MtrunA17_Chr5g0401761 | 50.847 | 177 | 70 | 1 | 1 | 160 | 1 | 177 | 1.64e-62 | 191 |
| Msa0139320 | MtrunA17_Chr4g0072861 | 50.000 | 178 | 72 | 1 | 1 | 161 | 1 | 178 | 2.25e-57 | 178 |
| Msa0139320 | MtrunA17_Chr1g0188111 | 49.650 | 143 | 72 | 0 | 15 | 157 | 32 | 174 | 7.89e-48 | 154 |
| Msa0139320 | MtrunA17_Chr8g0373271 | 42.466 | 146 | 81 | 3 | 14 | 156 | 28 | 173 | 4.53e-36 | 124 |
| Msa0139320 | MtrunA17_Chr5g0395671 | 84.906 | 53 | 8 | 0 | 114 | 166 | 43 | 95 | 3.50e-28 | 100 |
| Msa0139320 | MtrunA17_Chr5g0434561 | 36.449 | 107 | 68 | 0 | 29 | 135 | 49 | 155 | 1.51e-22 | 89.4 |
| Msa0139320 | MtrunA17_Chr2g0287721 | 30.147 | 136 | 95 | 0 | 29 | 164 | 53 | 188 | 2.75e-22 | 89.0 |
| Msa0139320 | MtrunA17_Chr5g0395651 | 57.534 | 73 | 14 | 1 | 1 | 56 | 1 | 73 | 1.45e-21 | 83.6 |
| Msa0139320 | MtrunA17_Chr5g0401071 | 29.688 | 128 | 90 | 0 | 29 | 156 | 49 | 176 | 1.11e-20 | 84.3 |
| Msa0139320 | MtrunA17_Chr4g0012371 | 26.562 | 128 | 94 | 0 | 29 | 156 | 30 | 157 | 2.16e-17 | 75.1 |
| Msa0139320 | MtrunA17_Chr2g0294701 | 28.472 | 144 | 91 | 2 | 30 | 161 | 50 | 193 | 6.99e-16 | 72.0 |
| Msa0139320 | MtrunA17_Chr5g0395661 | 69.767 | 43 | 13 | 0 | 71 | 113 | 1 | 43 | 2.41e-15 | 67.0 |
| Msa0139320 | MtrunA17_Chr4g0068171 | 29.167 | 144 | 90 | 2 | 30 | 161 | 50 | 193 | 2.47e-15 | 70.5 |
| Msa0139320 | MtrunA17_Chr7g0271761 | 27.778 | 144 | 92 | 2 | 30 | 161 | 50 | 193 | 4.20e-15 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139320 | AT3G03120.1 | 82.540 | 189 | 16 | 1 | 1 | 172 | 1 | 189 | 1.58e-113 | 321 |
| Msa0139320 | AT5G17060.2 | 81.481 | 189 | 18 | 1 | 1 | 172 | 1 | 189 | 3.22e-113 | 320 |
| Msa0139320 | AT5G17060.1 | 81.481 | 189 | 18 | 1 | 1 | 172 | 1 | 189 | 3.22e-113 | 320 |
| Msa0139320 | AT3G03120.2 | 80.769 | 130 | 8 | 1 | 1 | 113 | 1 | 130 | 1.12e-70 | 210 |
| Msa0139320 | AT1G10630.1 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 5.86e-66 | 200 |
| Msa0139320 | AT1G10630.2 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 5.86e-66 | 200 |
| Msa0139320 | AT1G23490.1 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 1.08e-65 | 199 |
| Msa0139320 | AT1G70490.2 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 1.08e-65 | 199 |
| Msa0139320 | AT1G70490.7 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 1.08e-65 | 199 |
| Msa0139320 | AT1G70490.4 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 1.08e-65 | 199 |
| Msa0139320 | AT1G70490.3 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 1.08e-65 | 199 |
| Msa0139320 | AT1G70490.1 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 1.08e-65 | 199 |
| Msa0139320 | AT1G70490.6 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 1.08e-65 | 199 |
| Msa0139320 | AT1G70490.5 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 1.08e-65 | 199 |
| Msa0139320 | AT3G62290.3 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 1.62e-65 | 199 |
| Msa0139320 | AT3G62290.1 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 1.62e-65 | 199 |
| Msa0139320 | AT3G62290.2 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 1.62e-65 | 199 |
| Msa0139320 | AT2G47170.2 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 1.79e-65 | 199 |
| Msa0139320 | AT2G47170.1 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 1.79e-65 | 199 |
| Msa0139320 | AT2G47170.3 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 1.79e-65 | 199 |
| Msa0139320 | AT5G14670.2 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 2.74e-65 | 198 |
| Msa0139320 | AT5G14670.3 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 2.74e-65 | 198 |
| Msa0139320 | AT5G14670.1 | 53.107 | 177 | 66 | 1 | 1 | 160 | 1 | 177 | 3.91e-65 | 198 |
| Msa0139320 | AT2G24765.1 | 51.124 | 178 | 70 | 1 | 1 | 161 | 1 | 178 | 2.02e-59 | 183 |
| Msa0139320 | AT2G15310.1 | 48.588 | 177 | 74 | 1 | 1 | 160 | 1 | 177 | 7.80e-57 | 177 |
| Msa0139320 | AT3G22950.1 | 51.049 | 143 | 70 | 0 | 15 | 157 | 32 | 174 | 1.66e-50 | 160 |
| Msa0139320 | AT3G22950.2 | 51.049 | 143 | 70 | 0 | 15 | 157 | 32 | 174 | 1.66e-50 | 160 |
| Msa0139320 | AT2G24765.2 | 49.219 | 128 | 48 | 1 | 1 | 111 | 1 | 128 | 1.85e-37 | 126 |
| Msa0139320 | AT2G18390.1 | 43.836 | 146 | 79 | 3 | 14 | 156 | 28 | 173 | 1.33e-36 | 125 |
| Msa0139320 | AT1G02440.1 | 36.316 | 190 | 94 | 5 | 1 | 163 | 1 | 190 | 2.57e-34 | 120 |
| Msa0139320 | AT1G02430.1 | 38.421 | 190 | 90 | 5 | 1 | 163 | 1 | 190 | 2.99e-34 | 119 |
| Msa0139320 | AT5G52210.1 | 30.882 | 136 | 94 | 0 | 29 | 164 | 53 | 188 | 5.21e-23 | 91.3 |
| Msa0139320 | AT5G52210.2 | 30.882 | 136 | 94 | 0 | 29 | 164 | 53 | 188 | 5.21e-23 | 91.3 |
| Msa0139320 | AT1G02430.2 | 35.625 | 160 | 80 | 4 | 1 | 137 | 1 | 160 | 1.82e-22 | 88.6 |
| Msa0139320 | AT5G37680.2 | 30.469 | 128 | 89 | 0 | 29 | 156 | 2 | 129 | 6.36e-22 | 86.7 |
| Msa0139320 | AT5G37680.1 | 33.645 | 107 | 71 | 0 | 29 | 135 | 49 | 155 | 1.28e-21 | 87.0 |
| Msa0139320 | AT3G49860.1 | 32.710 | 107 | 72 | 0 | 29 | 135 | 41 | 147 | 2.17e-21 | 86.3 |
| Msa0139320 | AT3G49870.2 | 31.250 | 128 | 88 | 0 | 29 | 156 | 30 | 157 | 3.65e-21 | 85.5 |
| Msa0139320 | AT3G49870.1 | 31.250 | 128 | 88 | 0 | 29 | 156 | 49 | 176 | 5.72e-21 | 85.5 |
| Msa0139320 | AT5G67560.1 | 30.469 | 128 | 89 | 0 | 29 | 156 | 49 | 176 | 2.56e-20 | 83.6 |
| Msa0139320 | AT3G62560.1 | 28.671 | 143 | 90 | 3 | 30 | 160 | 50 | 192 | 8.17e-15 | 69.3 |
| Msa0139320 | AT4G02080.1 | 27.083 | 144 | 93 | 2 | 30 | 161 | 50 | 193 | 1.49e-14 | 68.6 |
| Msa0139320 | AT1G56330.1 | 25.874 | 143 | 94 | 1 | 30 | 160 | 50 | 192 | 9.27e-14 | 66.6 |
| Msa0139320 | AT1G09180.1 | 26.389 | 144 | 94 | 2 | 30 | 161 | 50 | 193 | 4.60e-13 | 64.7 |
Find 93 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACAGTTACTCTGCCTTTC+AGG | 0.123010 | 1_3:+72967997 | Msa0139320:three_prime_UTR |
| CTATTGGATATTTGTATATC+AGG | 0.238381 | 1_3:+72968700 | Msa0139320:three_prime_UTR |
| TAATATAATGTCACTTCTAT+TGG | 0.250775 | 1_3:+72968684 | Msa0139320:intron |
| GAAAGCAAAGCAGGAATTTC+AGG | 0.253795 | 1_3:+72966090 | Msa0139320:CDS |
| GATTACCAATCACGACATTT+TGG | 0.262840 | 1_3:-72967939 | None:intergenic |
| TGATTTGATTTGATTTGATT+TGG | 0.281619 | 1_3:-72964451 | None:intergenic |
| GATTGGTAATCAAATTCTTT+TGG | 0.330564 | 1_3:+72967951 | Msa0139320:three_prime_UTR |
| TGATGGCCTTTATGAGGGTT+TGG | 0.331261 | 1_3:+72967697 | Msa0139320:CDS |
| TTGATCTAAAGAATAGAAAA+TGG | 0.336411 | 1_3:+72967645 | Msa0139320:CDS |
| CACATATTATTGTGGTCAAA+AGG | 0.337794 | 1_3:-72968337 | None:intergenic |
| ACAAGGCACCTGTGCACTTA+AGG | 0.339217 | 1_3:+72967673 | Msa0139320:CDS |
| AAACTCTTCGATTCCTTCTT+CGG | 0.364291 | 1_3:+72964576 | Msa0139320:CDS |
| TTATCTACTGTTCCTACAAT+TGG | 0.369753 | 1_3:+72965293 | Msa0139320:CDS |
| ATGACACTGTTGAGCATAAA+CGG | 0.386547 | 1_3:-72966217 | None:intergenic |
| GCGATCGTCACAATTTCTTT+AGG | 0.389926 | 1_3:+72968264 | Msa0139320:three_prime_UTR |
| ATTAACAAAGTGGTGAGAAT+TGG | 0.390787 | 1_3:+72964416 | None:intergenic |
| GTCTGGACCGTGAGAGAATT+GGG | 0.392903 | 1_3:+72966068 | Msa0139320:CDS |
| TTATTATGATTCAGTTAGAT+TGG | 0.404356 | 1_3:+72968299 | Msa0139320:three_prime_UTR |
| TAAGGGTGATGGCCTTTATG+AGG | 0.405630 | 1_3:+72967691 | Msa0139320:CDS |
| AGGGAAGTGTGTGACGGATT+AGG | 0.411446 | 1_3:+72967617 | Msa0139320:CDS |
| AAATAAAACCCACCAATTGT+AGG | 0.427108 | 1_3:-72965305 | None:intergenic |
| AGTCTGGACCGTGAGAGAAT+TGG | 0.428076 | 1_3:+72966067 | Msa0139320:CDS |
| GATATATGTTGTTGATAGTC+TGG | 0.429765 | 1_3:+72966051 | Msa0139320:intron |
| AGAATCAGAAGAAACGCAAC+AGG | 0.438072 | 1_3:+72964473 | Msa0139320:five_prime_UTR |
| CAAGGCACCTGTGCACTTAA+GGG | 0.443318 | 1_3:+72967674 | Msa0139320:CDS |
| ACCAGTCCAAACCCTCATAA+AGG | 0.443770 | 1_3:-72967703 | None:intergenic |
| GCTGCTGGATACTCTTCATT+AGG | 0.445230 | 1_3:+72967752 | Msa0139320:CDS |
| AAAGTGTCCTCAATTTCTCT+TGG | 0.449055 | 1_3:-72965824 | None:intergenic |
| ACATACCAGGTCTTGTTTGT+TGG | 0.462219 | 1_3:-72966251 | None:intergenic |
| TATGCTCAACAGTGTCATCT+TGG | 0.465762 | 1_3:+72966222 | Msa0139320:CDS |
| GGATAGAAGGTCTTGGATAC+CGG | 0.472908 | 1_3:+72968125 | Msa0139320:three_prime_UTR |
| TATTATGATTCAGTTAGATT+GGG | 0.476793 | 1_3:+72968300 | Msa0139320:three_prime_UTR |
| AACATTCACAAAGTGTAAGA+TGG | 0.480467 | 1_3:-72968180 | None:intergenic |
| TTGCTTTCCCAATTCTCTCA+CGG | 0.480979 | 1_3:-72966075 | None:intergenic |
| TACAGTTACTCTGCCTTTCA+GGG | 0.485049 | 1_3:+72967998 | Msa0139320:three_prime_UTR |
| CACTTCCAAAATGTCGTGAT+TGG | 0.486659 | 1_3:+72967934 | Msa0139320:three_prime_UTR |
| TTTGCTTTGATCTGATCGCA+TGG | 0.488081 | 1_3:+72964539 | Msa0139320:exon |
| CACGTTAAGTGCACGGGTAC+CGG | 0.490269 | 1_3:+72968104 | Msa0139320:three_prime_UTR |
| ACATATTATTGTGGTCAAAA+GGG | 0.495344 | 1_3:-72968336 | None:intergenic |
| AAGAGAAATTGAGGACACTT+TGG | 0.498427 | 1_3:+72965826 | Msa0139320:CDS |
| TATGATTCAGTTAGATTGGG+TGG | 0.505038 | 1_3:+72968303 | Msa0139320:three_prime_UTR |
| AAGAAACGCAACAGGGAAGA+AGG | 0.506824 | 1_3:+72964481 | Msa0139320:five_prime_UTR |
| CATCTCGGTATTGCCGAAGA+AGG | 0.507052 | 1_3:-72964589 | None:intergenic |
| TTCACGGTTTGGGATGTTGG+AGG | 0.507103 | 1_3:+72965801 | Msa0139320:CDS |
| GAGAATTGGGAAAGCAAAGC+AGG | 0.509211 | 1_3:+72966081 | Msa0139320:CDS |
| TGCGATCAGATCAAAGCAAA+GGG | 0.512024 | 1_3:-72964536 | None:intergenic |
| GCCTTTATGAGGGTTTGGAC+TGG | 0.513026 | 1_3:+72967702 | Msa0139320:CDS |
| GTGCACGGGTACCGGATAGA+AGG | 0.517598 | 1_3:+72968112 | Msa0139320:three_prime_UTR |
| TTGCTTTGATCTGATCGCAT+GGG | 0.518898 | 1_3:+72964540 | Msa0139320:exon |
| CTGAAGGAGATGAAGGCTGC+TGG | 0.519424 | 1_3:+72967737 | Msa0139320:CDS |
| CTCAACACTGAAGGAGATGA+AGG | 0.520559 | 1_3:+72967730 | Msa0139320:CDS |
| GTGTAAGATGGAGAAAATCA+AGG | 0.522947 | 1_3:-72968168 | None:intergenic |
| AGAAATTGAGGACACTTTGG+AGG | 0.527256 | 1_3:+72965829 | Msa0139320:CDS |
| TGACACTGTTGAGCATAAAC+GGG | 0.527829 | 1_3:-72966216 | None:intergenic |
| ACCTGTGCACTTAAGGGTGA+TGG | 0.530294 | 1_3:+72967680 | Msa0139320:CDS |
| ATTAATTAACATTAACAAAG+TGG | 0.531971 | 1_3:+72964406 | None:intergenic |
| CAGATCAAAGCAAAGGGAAG+GGG | 0.537826 | 1_3:-72964530 | None:intergenic |
| TTGGAGGCCAAGAGAAATTG+AGG | 0.540924 | 1_3:+72965817 | Msa0139320:CDS |
| AAGGGTGATGGCCTTTATGA+GGG | 0.543901 | 1_3:+72967692 | Msa0139320:CDS |
| CGGTACCCGTGCACTTAACG+TGG | 0.544589 | 1_3:-72968103 | None:intergenic |
| CTTCATCTCCTTCAGTGTTG+AGG | 0.544907 | 1_3:-72967729 | None:intergenic |
| GCCATCACCCTTAAGTGCAC+AGG | 0.550998 | 1_3:-72967681 | None:intergenic |
| GAGAGGAGCGATGACGGCAA+GGG | 0.553248 | 1_3:+72967598 | Msa0139320:intron |
| CTTCGGCAATACCGAGATGC+GGG | 0.555246 | 1_3:+72964593 | Msa0139320:CDS |
| GGGTACCGGATAGAAGGTCT+TGG | 0.556999 | 1_3:+72968118 | Msa0139320:three_prime_UTR |
| CCATAATTCACATATTATTG+TGG | 0.560000 | 1_3:-72968345 | None:intergenic |
| AGAGAGGAGCGATGACGGCA+AGG | 0.563849 | 1_3:+72967597 | Msa0139320:intron |
| AAAATTGATTACCCGCATCT+CGG | 0.568887 | 1_3:-72964604 | None:intergenic |
| TGTAAGATGGAGAAAATCAA+GGG | 0.569972 | 1_3:-72968167 | None:intergenic |
| TTTCTAGAGAGGAGCGATGA+CGG | 0.572515 | 1_3:+72967592 | Msa0139320:intron |
| CTGGTTGTCCTCAACACTGA+AGG | 0.574863 | 1_3:+72967721 | Msa0139320:CDS |
| ATCAGATCAAAGCAAAGGGA+AGG | 0.574929 | 1_3:-72964532 | None:intergenic |
| AATAGAAAATGGCACATACA+AGG | 0.575931 | 1_3:+72967656 | Msa0139320:CDS |
| ATGCGATCAGATCAAAGCAA+AGG | 0.579992 | 1_3:-72964537 | None:intergenic |
| TTGTGAATGTTATTTCTGTG+TGG | 0.583983 | 1_3:+72968192 | Msa0139320:three_prime_UTR |
| GGTATCCAAGACCTTCTATC+CGG | 0.586533 | 1_3:-72968123 | None:intergenic |
| ACATCTTTAAATACCCTGAA+AGG | 0.597782 | 1_3:-72968011 | None:intergenic |
| GGATACTCTTCATTAGGACT+AGG | 0.607922 | 1_3:+72967758 | Msa0139320:CDS |
| GCAACAGGGAAGAAGGAACA+AGG | 0.611231 | 1_3:+72964488 | Msa0139320:five_prime_UTR |
| ATACCCCACGTTAAGTGCAC+GGG | 0.614613 | 1_3:+72968098 | Msa0139320:three_prime_UTR |
| AACTGAATCATAATAACATG+TGG | 0.617612 | 1_3:-72968292 | None:intergenic |
| TCAGATCAAAGCAAAGGGAA+GGG | 0.617653 | 1_3:-72964531 | None:intergenic |
| ATATTGTACAAGCTTCACAT+TGG | 0.619894 | 1_3:+72965263 | Msa0139320:intron |
| GATACCCCACGTTAAGTGCA+CGG | 0.622277 | 1_3:+72968097 | Msa0139320:three_prime_UTR |
| TGCACATTCACCAAATCCCA+AGG | 0.632802 | 1_3:-72967902 | None:intergenic |
| ACTTGCCAACAAACAAGACC+TGG | 0.637361 | 1_3:+72966246 | Msa0139320:CDS |
| AGAATGAACAACTGATCCGC+CGG | 0.638506 | 1_3:-72968144 | None:intergenic |
| ACGGCAAGGGAAGTGTGTGA+CGG | 0.660211 | 1_3:+72967611 | Msa0139320:CDS |
| TCTTCGGCAATACCGAGATG+CGG | 0.663090 | 1_3:+72964592 | Msa0139320:CDS |
| GGTACCCGTGCACTTAACGT+GGG | 0.671899 | 1_3:-72968102 | None:intergenic |
| TAGAAGGTCTTGGATACCGG+CGG | 0.674834 | 1_3:+72968128 | Msa0139320:three_prime_UTR |
| GTACCCGTGCACTTAACGTG+GGG | 0.697074 | 1_3:-72968101 | None:intergenic |
| GAATCAGAAGAAACGCAACA+GGG | 0.708414 | 1_3:+72964474 | Msa0139320:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTACATAATCAATTTT+TGG | - | chr1_3:72964739-72964758 | None:intergenic | 10.0% |
| !! | ACATTATATTATAATTATGT+TGG | - | chr1_3:72968675-72968694 | None:intergenic | 10.0% |
| !!! | TGATTATGTAAAATTGATTT+CGG | + | chr1_3:72964744-72964763 | Msa0139320:intron | 15.0% |
| !! | AAATAAAAATAAATCTACTC+TGG | + | chr1_3:72964909-72964928 | Msa0139320:intron | 15.0% |
| !!! | AGAATTAATTTTGACAAATT+TGG | - | chr1_3:72964940-72964959 | None:intergenic | 15.0% |
| !!! | ATTCTTTTTTCTTTCAAATT+TGG | + | chr1_3:72965191-72965210 | Msa0139320:intron | 15.0% |
| !! | ATTTAAATAGCTGTAATATA+TGG | + | chr1_3:72966462-72966481 | Msa0139320:intron | 15.0% |
| !! | AATATTCATTATTTACTTAC+TGG | + | chr1_3:72966728-72966747 | Msa0139320:intron | 15.0% |
| !! | GAATTTCTAATTATATTATG+AGG | - | chr1_3:72967174-72967193 | None:intergenic | 15.0% |
| !!! | TCTAATATTTTTATGAATCA+AGG | - | chr1_3:72968230-72968249 | None:intergenic | 15.0% |
| !! | AAATTATAACGTATAGTAAT+TGG | + | chr1_3:72968607-72968626 | Msa0139320:intron | 15.0% |
| !!! | TGATTTGATTTGATTTGATT+TGG | - | chr1_3:72964454-72964473 | None:intergenic | 20.0% |
| !!! | TCTATGAAACTTTTTTTTGA+TGG | + | chr1_3:72965546-72965565 | Msa0139320:intron | 20.0% |
| !! | AATTGTATTGCAAATATATG+TGG | + | chr1_3:72965615-72965634 | Msa0139320:intron | 20.0% |
| !!! | GTATAAGAATGTTATTTTCA+CGG | + | chr1_3:72965785-72965804 | Msa0139320:CDS | 20.0% |
| !! | ATAAGAATAATTGTAGCAAA+AGG | - | chr1_3:72965959-72965978 | None:intergenic | 20.0% |
| !! | CAATTATTCTTATATCCTAT+AGG | + | chr1_3:72965966-72965985 | Msa0139320:intron | 20.0% |
| !!! | AGAACTTTTTTAAGCAAAAA+CGG | + | chr1_3:72967214-72967233 | Msa0139320:intron | 20.0% |
| !! | TTGATGAAATTTGACATATT+GGG | - | chr1_3:72967426-72967445 | None:intergenic | 20.0% |
| !! | ATTGATGAAATTTGACATAT+TGG | - | chr1_3:72967427-72967446 | None:intergenic | 20.0% |
| !! | AATATGTCAAATTTCATCAA+TGG | + | chr1_3:72967426-72967445 | Msa0139320:intron | 20.0% |
| !! | TTGATCTAAAGAATAGAAAA+TGG | + | chr1_3:72967645-72967664 | Msa0139320:CDS | 20.0% |
| !!! | GTATATTTTCATTCTTTTGT+AGG | + | chr1_3:72967871-72967890 | Msa0139320:intron | 20.0% |
| !! | TTATTATGATTCAGTTAGAT+TGG | + | chr1_3:72968299-72968318 | Msa0139320:three_prime_UTR | 20.0% |
| !! | TATTATGATTCAGTTAGATT+GGG | + | chr1_3:72968300-72968319 | Msa0139320:three_prime_UTR | 20.0% |
| !! | GTTTACATATTAACATTTGT+TGG | - | chr1_3:72968432-72968451 | None:intergenic | 20.0% |
| !!! | TAATATAATGTCACTTCTAT+TGG | + | chr1_3:72968684-72968703 | Msa0139320:intron | 20.0% |
| !!! | TAGAGTTTTAATGCATGTTT+GGG | + | chr1_3:72964710-72964729 | Msa0139320:intron | 25.0% |
| ! | ATTATTATGTAAAAGTGAGC+TGG | + | chr1_3:72964808-72964827 | Msa0139320:intron | 25.0% |
| ! | TCAAACTTGAAGCTAAAAAT+TGG | - | chr1_3:72964877-72964896 | None:intergenic | 25.0% |
| ! | AGAAAGCTACATTAACAATT+TGG | - | chr1_3:72965013-72965032 | None:intergenic | 25.0% |
| !!! | TTTTTCTTTCAAATTTGGTG+TGG | + | chr1_3:72965196-72965215 | Msa0139320:intron | 25.0% |
| ! | TAATGCTAAAAAGTTGTGTT+TGG | + | chr1_3:72965402-72965421 | Msa0139320:intron | 25.0% |
| ! | ATTTGCAATACAATTACAGA+GGG | - | chr1_3:72965610-72965629 | None:intergenic | 25.0% |
| ! | TATTTGCAATACAATTACAG+AGG | - | chr1_3:72965611-72965630 | None:intergenic | 25.0% |
| ! | AGCAGAACGAAAATTATAAT+TGG | + | chr1_3:72965686-72965705 | Msa0139320:intron | 25.0% |
| !!! | GTGTTAATTTGTAAGCTTTT+GGG | - | chr1_3:72966123-72966142 | None:intergenic | 25.0% |
| !!! | TGTGTTAATTTGTAAGCTTT+TGG | - | chr1_3:72966124-72966143 | None:intergenic | 25.0% |
| ! | TAGCTGTAATATATGGAATA+TGG | + | chr1_3:72966469-72966488 | Msa0139320:intron | 25.0% |
| ! | ATATATGGAATATGGTTCAA+AGG | + | chr1_3:72966477-72966496 | Msa0139320:intron | 25.0% |
| !! | TGAATATTTTCAACTGTACT+TGG | - | chr1_3:72966716-72966735 | None:intergenic | 25.0% |
| ! | ACAACATATACAAATAGTGA+AGG | - | chr1_3:72966767-72966786 | None:intergenic | 25.0% |
| ! | TTTGTATATGTTGTCATTGT+TGG | + | chr1_3:72966773-72966792 | Msa0139320:intron | 25.0% |
| ! | TTTCTGTTGTCTAAGTTAAA+GGG | + | chr1_3:72966906-72966925 | Msa0139320:intron | 25.0% |
| ! | AAGGGAAGAAAACTTATTTA+AGG | + | chr1_3:72966924-72966943 | Msa0139320:intron | 25.0% |
| !! | TGTATGTTTTCAAATCTTGA+GGG | + | chr1_3:72967136-72967155 | Msa0139320:intron | 25.0% |
| ! | GATTACATAAAGAATTCAAG+TGG | - | chr1_3:72967361-72967380 | None:intergenic | 25.0% |
| ! | GGATATACATAATCATACAA+AGG | - | chr1_3:72967480-72967499 | None:intergenic | 25.0% |
| ! | TTGCAGTTATAGCTAAATTA+AGG | - | chr1_3:72967557-72967576 | None:intergenic | 25.0% |
| ! | TTCAAACCTGAAAAATTAGA+AGG | - | chr1_3:72967792-72967811 | None:intergenic | 25.0% |
| !! | TCATTCTTTTGTAGGTATTT+TGG | + | chr1_3:72967879-72967898 | Msa0139320:intron | 25.0% |
| !!! | GATTGGTAATCAAATTCTTT+TGG | + | chr1_3:72967951-72967970 | Msa0139320:three_prime_UTR | 25.0% |
| ! | AACTGAATCATAATAACATG+TGG | - | chr1_3:72968295-72968314 | None:intergenic | 25.0% |
| ! | ACATATTATTGTGGTCAAAA+GGG | - | chr1_3:72968339-72968358 | None:intergenic | 25.0% |
| ! | CCATAATTCACATATTATTG+TGG | - | chr1_3:72968348-72968367 | None:intergenic | 25.0% |
| ! | CCACAATAATATGTGAATTA+TGG | + | chr1_3:72968345-72968364 | Msa0139320:intron | 25.0% |
| !!! | TGAATTATGGTTTTGTTACA+TGG | + | chr1_3:72968358-72968377 | Msa0139320:intron | 25.0% |
| !! | GTAGAGTTTTAATGCATGTT+TGG | + | chr1_3:72964709-72964728 | Msa0139320:intron | 30.0% |
| !! | AGAGTTTTAATGCATGTTTG+GGG | + | chr1_3:72964711-72964730 | Msa0139320:intron | 30.0% |
| CAGCAATAATTCGATTATGT+CGG | + | chr1_3:72965040-72965059 | Msa0139320:intron | 30.0% | |
| AGCAATAATTCGATTATGTC+GGG | + | chr1_3:72965041-72965060 | Msa0139320:intron | 30.0% | |
| !! | TTTCAAATTTGGTGTGGTTT+AGG | + | chr1_3:72965202-72965221 | Msa0139320:intron | 30.0% |
| ATATTGTACAAGCTTCACAT+TGG | + | chr1_3:72965263-72965282 | Msa0139320:intron | 30.0% | |
| TTATCTACTGTTCCTACAAT+TGG | + | chr1_3:72965293-72965312 | Msa0139320:CDS | 30.0% | |
| AAATAAAACCCACCAATTGT+AGG | - | chr1_3:72965308-72965327 | None:intergenic | 30.0% | |
| ATGCTTCCTAATTATCTACT+TGG | + | chr1_3:72965452-72965471 | Msa0139320:intron | 30.0% | |
| CAACAACCAAGTAGATAATT+AGG | - | chr1_3:72965461-72965480 | None:intergenic | 30.0% | |
| TGTTTAAATATGCTTGTGAG+CGG | + | chr1_3:72965491-72965510 | Msa0139320:intron | 30.0% | |
| TAGAACATCAGAATTCATGA+GGG | - | chr1_3:72965530-72965549 | None:intergenic | 30.0% | |
| ATAGAACATCAGAATTCATG+AGG | - | chr1_3:72965531-72965550 | None:intergenic | 30.0% | |
| TTTGCAATACAATTACAGAG+GGG | - | chr1_3:72965609-72965628 | None:intergenic | 30.0% | |
| TGTATTGCAAATATATGTGG+TGG | + | chr1_3:72965618-72965637 | Msa0139320:intron | 30.0% | |
| GTATTGCAAATATATGTGGT+GGG | + | chr1_3:72965619-72965638 | Msa0139320:intron | 30.0% | |
| TATAAGTTTGTATGCATTGC+AGG | + | chr1_3:72965741-72965760 | Msa0139320:intron | 30.0% | |
| !!! | AGAATGTTATTTTCACGGTT+TGG | + | chr1_3:72965790-72965809 | Msa0139320:CDS | 30.0% |
| !!! | GAATGTTATTTTCACGGTTT+GGG | + | chr1_3:72965791-72965810 | Msa0139320:CDS | 30.0% |
| !!! | CACTATTTTAACAACACAGA+TGG | + | chr1_3:72965852-72965871 | Msa0139320:CDS | 30.0% |
| ! | TTTTAACAACACAGATGGTT+TGG | + | chr1_3:72965857-72965876 | Msa0139320:CDS | 30.0% |
| ! | GAAAAACAACTTGTGTCATT+TGG | + | chr1_3:72965919-72965938 | Msa0139320:intron | 30.0% |
| !! | GATATATGTTGTTGATAGTC+TGG | + | chr1_3:72966051-72966070 | Msa0139320:intron | 30.0% |
| TAAGTTATAGGTCATTCAGA+TGG | - | chr1_3:72966303-72966322 | None:intergenic | 30.0% | |
| TCTTTACACGTGTAAGTTAT+AGG | - | chr1_3:72966315-72966334 | None:intergenic | 30.0% | |
| CAAAGTCAAATCATGTGAAT+TGG | + | chr1_3:72966341-72966360 | Msa0139320:intron | 30.0% | |
| ACTGGTATGTGCATTAATTA+TGG | - | chr1_3:72966409-72966428 | None:intergenic | 30.0% | |
| TTTCTTTCCTCTTATAATGC+TGG | + | chr1_3:72966507-72966526 | Msa0139320:intron | 30.0% | |
| AAAAACAGAAAACTGCAAGA+CGG | - | chr1_3:72966612-72966631 | None:intergenic | 30.0% | |
| CTTTCTGTTGTCTAAGTTAA+AGG | + | chr1_3:72966905-72966924 | Msa0139320:intron | 30.0% | |
| ! | ATCTAACCAGTGTTGTTAAA+TGG | + | chr1_3:72966950-72966969 | Msa0139320:intron | 30.0% |
| ! | TCTAACCAGTGTTGTTAAAT+GGG | + | chr1_3:72966951-72966970 | Msa0139320:intron | 30.0% |
| ATTTGAAAACATACACTGGT+TGG | - | chr1_3:72967131-72967150 | None:intergenic | 30.0% | |
| CAAGATTTGAAAACATACAC+TGG | - | chr1_3:72967135-72967154 | None:intergenic | 30.0% | |
| ! | GTGTATGTTTTCAAATCTTG+AGG | + | chr1_3:72967135-72967154 | Msa0139320:intron | 30.0% |
| ! | ACTAGTATCAAGACTTTTTG+TGG | - | chr1_3:72967269-72967288 | None:intergenic | 30.0% |
| AGCTAAATTAAGGCAAACTT+CGG | - | chr1_3:72967547-72967566 | None:intergenic | 30.0% | |
| AATAGAAAATGGCACATACA+AGG | + | chr1_3:72967656-72967675 | Msa0139320:CDS | 30.0% | |
| ! | CTTCATCCTTCTAATTTTTC+AGG | + | chr1_3:72967783-72967802 | Msa0139320:exon | 30.0% |
| ACATCTTTAAATACCCTGAA+AGG | - | chr1_3:72968014-72968033 | None:intergenic | 30.0% | |
| TGTAAGATGGAGAAAATCAA+GGG | - | chr1_3:72968170-72968189 | None:intergenic | 30.0% | |
| AACATTCACAAAGTGTAAGA+TGG | - | chr1_3:72968183-72968202 | None:intergenic | 30.0% | |
| !! | TTGTGAATGTTATTTCTGTG+TGG | + | chr1_3:72968192-72968211 | Msa0139320:three_prime_UTR | 30.0% |
| CACATATTATTGTGGTCAAA+AGG | - | chr1_3:72968340-72968359 | None:intergenic | 30.0% | |
| CTAATAGATGCAGAAATGTA+GGG | - | chr1_3:72968408-72968427 | None:intergenic | 30.0% | |
| TCTAATAGATGCAGAAATGT+AGG | - | chr1_3:72968409-72968428 | None:intergenic | 30.0% | |
| AAACTCTTCGATTCCTTCTT+CGG | + | chr1_3:72964576-72964595 | Msa0139320:CDS | 35.0% | |
| AAAATTGATTACCCGCATCT+CGG | - | chr1_3:72964607-72964626 | None:intergenic | 35.0% | |
| GCAATAATTCGATTATGTCG+GGG | + | chr1_3:72965042-72965061 | Msa0139320:intron | 35.0% | |
| TTGCAATACAATTACAGAGG+GGG | - | chr1_3:72965608-72965627 | None:intergenic | 35.0% | |
| TTGAATGGATGCAAACATGA+TGG | + | chr1_3:72965652-72965671 | Msa0139320:intron | 35.0% | |
| !! | ATGCAAACATGATGGTGTTT+TGG | + | chr1_3:72965660-72965679 | Msa0139320:intron | 35.0% |
| ! | AAAGTGTCCTCAATTTCTCT+TGG | - | chr1_3:72965827-72965846 | None:intergenic | 35.0% |
| AAGAGAAATTGAGGACACTT+TGG | + | chr1_3:72965826-72965845 | Msa0139320:CDS | 35.0% | |
| GACTGAAAAGTCAGGATATT+GGG | + | chr1_3:72965988-72966007 | Msa0139320:intron | 35.0% | |
| GATATTGGGCTAATGTATCA+AGG | + | chr1_3:72966002-72966021 | Msa0139320:intron | 35.0% | |
| TACACAACATGTTTCCAAAC+AGG | + | chr1_3:72966150-72966169 | Msa0139320:intron | 35.0% | |
| AGATCAATTCAAAGCCTGTT+TGG | - | chr1_3:72966167-72966186 | None:intergenic | 35.0% | |
| !! | ACAGGCTTTGAATTGATCTA+TGG | + | chr1_3:72966168-72966187 | Msa0139320:intron | 35.0% |
| ATGACACTGTTGAGCATAAA+CGG | - | chr1_3:72966220-72966239 | None:intergenic | 35.0% | |
| ATACCAGTGCAAACATTGAA+GGG | + | chr1_3:72966421-72966440 | Msa0139320:intron | 35.0% | |
| GGAATATGGTTCAAAGGTTA+AGG | + | chr1_3:72966483-72966502 | Msa0139320:intron | 35.0% | |
| GTAACAACCAGCATTATAAG+AGG | - | chr1_3:72966517-72966536 | None:intergenic | 35.0% | |
| ACCAGACTAATTACACAGAT+GGG | - | chr1_3:72966642-72966661 | None:intergenic | 35.0% | |
| TACCAGACTAATTACACAGA+TGG | - | chr1_3:72966643-72966662 | None:intergenic | 35.0% | |
| ! | ACTGACTTAGAATGTTCACA+TGG | - | chr1_3:72966841-72966860 | None:intergenic | 35.0% |
| CCACCATAGACAATTTATGA+CGG | + | chr1_3:72967020-72967039 | Msa0139320:intron | 35.0% | |
| CACCATAGACAATTTATGAC+GGG | + | chr1_3:72967021-72967040 | Msa0139320:intron | 35.0% | |
| ACCATAGACAATTTATGACG+GGG | + | chr1_3:72967022-72967041 | Msa0139320:intron | 35.0% | |
| !! | GTGTTTATATGGTGGATGTT+TGG | + | chr1_3:72967080-72967099 | Msa0139320:intron | 35.0% |
| ! | ATGTTTTCAAATCTTGAGGG+AGG | + | chr1_3:72967139-72967158 | Msa0139320:intron | 35.0% |
| TTGTGGTCAAGCATAATGAT+GGG | - | chr1_3:72967252-72967271 | None:intergenic | 35.0% | |
| TTTGTGGTCAAGCATAATGA+TGG | - | chr1_3:72967253-72967272 | None:intergenic | 35.0% | |
| ! | TACTAGTGAGACTTGAGTTT+TGG | + | chr1_3:72967282-72967301 | Msa0139320:intron | 35.0% |
| !! | TTTCCTCTTCTTTTCTAGAG+AGG | + | chr1_3:72967581-72967600 | Msa0139320:intron | 35.0% |
| !!! | TTTTGTAGGTATTTTGGCCT+TGG | + | chr1_3:72967885-72967904 | Msa0139320:intron | 35.0% |
| !!! | TTTGTAGGTATTTTGGCCTT+GGG | + | chr1_3:72967886-72967905 | Msa0139320:intron | 35.0% |
| ! | GATTACCAATCACGACATTT+TGG | - | chr1_3:72967942-72967961 | None:intergenic | 35.0% |
| GTGTAAGATGGAGAAAATCA+AGG | - | chr1_3:72968171-72968190 | None:intergenic | 35.0% | |
| TATGATTCAGTTAGATTGGG+TGG | + | chr1_3:72968303-72968322 | Msa0139320:three_prime_UTR | 35.0% | |
| AGAATCAGAAGAAACGCAAC+AGG | + | chr1_3:72964473-72964492 | Msa0139320:five_prime_UTR | 40.0% | |
| GAATCAGAAGAAACGCAACA+GGG | + | chr1_3:72964474-72964493 | Msa0139320:five_prime_UTR | 40.0% | |
| TCAGATCAAAGCAAAGGGAA+GGG | - | chr1_3:72964534-72964553 | None:intergenic | 40.0% | |
| ATCAGATCAAAGCAAAGGGA+AGG | - | chr1_3:72964535-72964554 | None:intergenic | 40.0% | |
| TGCGATCAGATCAAAGCAAA+GGG | - | chr1_3:72964539-72964558 | None:intergenic | 40.0% | |
| ATGCGATCAGATCAAAGCAA+AGG | - | chr1_3:72964540-72964559 | None:intergenic | 40.0% | |
| TTTGCTTTGATCTGATCGCA+TGG | + | chr1_3:72964539-72964558 | Msa0139320:exon | 40.0% | |
| TTGCTTTGATCTGATCGCAT+GGG | + | chr1_3:72964540-72964559 | Msa0139320:exon | 40.0% | |
| TAATTCGATTATGTCGGGGT+TGG | + | chr1_3:72965046-72965065 | Msa0139320:intron | 40.0% | |
| AATTCGATTATGTCGGGGTT+GGG | + | chr1_3:72965047-72965066 | Msa0139320:intron | 40.0% | |
| !! | AGCTCAACTGGTTTGAACTA+AGG | + | chr1_3:72965071-72965090 | Msa0139320:intron | 40.0% |
| !! | GCTCAACTGGTTTGAACTAA+GGG | + | chr1_3:72965072-72965091 | Msa0139320:intron | 40.0% |
| ! | CTGGTTTGAACTAAGGGATA+AGG | + | chr1_3:72965078-72965097 | Msa0139320:intron | 40.0% |
| TGAACTAAGGGATAAGGAGT+TGG | + | chr1_3:72965084-72965103 | Msa0139320:intron | 40.0% | |
| GATAAGGAGTTGGAGATTCA+AGG | + | chr1_3:72965094-72965113 | Msa0139320:intron | 40.0% | |
| TCTACTGTTCCTACAATTGG+TGG | + | chr1_3:72965296-72965315 | Msa0139320:intron | 40.0% | |
| CTACTGTTCCTACAATTGGT+GGG | + | chr1_3:72965297-72965316 | Msa0139320:intron | 40.0% | |
| GTGGGTTTCTGTGAATTGAA+TGG | + | chr1_3:72965637-72965656 | Msa0139320:intron | 40.0% | |
| CCTCAAAGCTTAAACAACAG+TGG | - | chr1_3:72965719-72965738 | None:intergenic | 40.0% | |
| ! | CCACTGTTGTTTAAGCTTTG+AGG | + | chr1_3:72965716-72965735 | Msa0139320:intron | 40.0% |
| !! | ATTTTCACGGTTTGGGATGT+TGG | + | chr1_3:72965798-72965817 | Msa0139320:CDS | 40.0% |
| AGAAATTGAGGACACTTTGG+AGG | + | chr1_3:72965829-72965848 | Msa0139320:CDS | 40.0% | |
| TCCTATAGGACTGAAAAGTC+AGG | + | chr1_3:72965980-72965999 | Msa0139320:intron | 40.0% | |
| ! | TCCTGACTTTTCAGTCCTAT+AGG | - | chr1_3:72965984-72966003 | None:intergenic | 40.0% |
| GGACTGAAAAGTCAGGATAT+TGG | + | chr1_3:72965987-72966006 | Msa0139320:intron | 40.0% | |
| TTGCTTTCCCAATTCTCTCA+CGG | - | chr1_3:72966078-72966097 | None:intergenic | 40.0% | |
| GAAAGCAAAGCAGGAATTTC+AGG | + | chr1_3:72966090-72966109 | Msa0139320:CDS | 40.0% | |
| TGACACTGTTGAGCATAAAC+GGG | - | chr1_3:72966219-72966238 | None:intergenic | 40.0% | |
| TATGCTCAACAGTGTCATCT+TGG | + | chr1_3:72966222-72966241 | Msa0139320:CDS | 40.0% | |
| !! | ACATACCAGGTCTTGTTTGT+TGG | - | chr1_3:72966254-72966273 | None:intergenic | 40.0% |
| CAGATCAAGATACACATACC+AGG | - | chr1_3:72966267-72966286 | None:intergenic | 40.0% | |
| CATACCAGTGCAAACATTGA+AGG | + | chr1_3:72966420-72966439 | Msa0139320:intron | 40.0% | |
| TACCAGTGCAAACATTGAAG+GGG | + | chr1_3:72966422-72966441 | Msa0139320:intron | 40.0% | |
| ACCCATCTGTGTAATTAGTC+TGG | + | chr1_3:72966638-72966657 | Msa0139320:intron | 40.0% | |
| ! | TCAACTGTACTTGGTTCTTG+TGG | - | chr1_3:72966707-72966726 | None:intergenic | 40.0% |
| ACACAAGTGACACAATCTGT+TGG | - | chr1_3:72966815-72966834 | None:intergenic | 40.0% | |
| ATGGTCCCATTTAACAACAC+TGG | - | chr1_3:72966959-72966978 | None:intergenic | 40.0% | |
| ! | AGTGTTGTTAAATGGGACCA+TGG | + | chr1_3:72966958-72966977 | Msa0139320:intron | 40.0% |
| CCGTCATAAATTGTCTATGG+TGG | - | chr1_3:72967023-72967042 | None:intergenic | 40.0% | |
| CCATAGACAATTTATGACGG+GGG | + | chr1_3:72967023-72967042 | Msa0139320:intron | 40.0% | |
| ! | CATACACTGGTTGGAATCAA+TGG | - | chr1_3:72967122-72967141 | None:intergenic | 40.0% |
| !! | TAGTGAGACTTGAGTTTTGG+TGG | + | chr1_3:72967285-72967304 | Msa0139320:intron | 40.0% |
| TAATCTTTCCCACATGATCG+TGG | + | chr1_3:72967376-72967395 | Msa0139320:intron | 40.0% | |
| AGTGATCAGCTAGCAATACA+AGG | - | chr1_3:72967501-72967520 | None:intergenic | 40.0% | |
| GGATACTCTTCATTAGGACT+AGG | + | chr1_3:72967758-72967777 | Msa0139320:CDS | 40.0% | |
| !! | CAATCACGACATTTTGGAAG+TGG | - | chr1_3:72967936-72967955 | None:intergenic | 40.0% |
| CACTTCCAAAATGTCGTGAT+TGG | + | chr1_3:72967934-72967953 | Msa0139320:three_prime_UTR | 40.0% | |
| ATACAGTTACTCTGCCTTTC+AGG | + | chr1_3:72967997-72968016 | Msa0139320:three_prime_UTR | 40.0% | |
| TACAGTTACTCTGCCTTTCA+GGG | + | chr1_3:72967998-72968017 | Msa0139320:three_prime_UTR | 40.0% | |
| GCGATCGTCACAATTTCTTT+AGG | + | chr1_3:72968264-72968283 | Msa0139320:three_prime_UTR | 40.0% | |
| AAGAAACGCAACAGGGAAGA+AGG | + | chr1_3:72964481-72964500 | Msa0139320:five_prime_UTR | 45.0% | |
| CAGATCAAAGCAAAGGGAAG+GGG | - | chr1_3:72964533-72964552 | None:intergenic | 45.0% | |
| !! | GTGGTTTAGGTTGTCATGCT+TGG | + | chr1_3:72965215-72965234 | Msa0139320:intron | 45.0% |
| TTGGAGGCCAAGAGAAATTG+AGG | + | chr1_3:72965817-72965836 | Msa0139320:CDS | 45.0% | |
| GAGAATTGGGAAAGCAAAGC+AGG | + | chr1_3:72966081-72966100 | Msa0139320:CDS | 45.0% | |
| ACTTGCCAACAAACAAGACC+TGG | + | chr1_3:72966246-72966265 | Msa0139320:CDS | 45.0% | |
| TACCCCTTCAATGTTTGCAC+TGG | - | chr1_3:72966427-72966446 | None:intergenic | 45.0% | |
| AGTGCAAACATTGAAGGGGT+AGG | + | chr1_3:72966426-72966445 | Msa0139320:intron | 45.0% | |
| !! | TCTTGTGGTTGGTGGTCTAT+TGG | - | chr1_3:72966692-72966711 | None:intergenic | 45.0% |
| ! | TACTTGGTTCTTGTGGTTGG+TGG | - | chr1_3:72966700-72966719 | None:intergenic | 45.0% |
| ! | CTGTACTTGGTTCTTGTGGT+TGG | - | chr1_3:72966703-72966722 | None:intergenic | 45.0% |
| CCCCCGTCATAAATTGTCTA+TGG | - | chr1_3:72967026-72967045 | None:intergenic | 45.0% | |
| !! | TCAATGGCGGATATGATGGA+AGG | - | chr1_3:72967106-72967125 | None:intergenic | 45.0% |
| !! | GGAATCAATGGCGGATATGA+TGG | - | chr1_3:72967110-72967129 | None:intergenic | 45.0% |
| ! | ACACTGGTTGGAATCAATGG+CGG | - | chr1_3:72967119-72967138 | None:intergenic | 45.0% |
| GTCATGAACCACGATCATGT+GGG | - | chr1_3:72967387-72967406 | None:intergenic | 45.0% | |
| AGTCATGAACCACGATCATG+TGG | - | chr1_3:72967388-72967407 | None:intergenic | 45.0% | |
| ! | GCTCCTCTCTAGAAAAGAAG+AGG | - | chr1_3:72967587-72967606 | None:intergenic | 45.0% |
| ! | TTTCTAGAGAGGAGCGATGA+CGG | + | chr1_3:72967592-72967611 | Msa0139320:intron | 45.0% |
| ! | TAAGGGTGATGGCCTTTATG+AGG | + | chr1_3:72967691-72967710 | Msa0139320:CDS | 45.0% |
| ! | AAGGGTGATGGCCTTTATGA+GGG | + | chr1_3:72967692-72967711 | Msa0139320:CDS | 45.0% |
| TGATGGCCTTTATGAGGGTT+TGG | + | chr1_3:72967697-72967716 | Msa0139320:CDS | 45.0% | |
| ACCAGTCCAAACCCTCATAA+AGG | - | chr1_3:72967706-72967725 | None:intergenic | 45.0% | |
| CTTCATCTCCTTCAGTGTTG+AGG | - | chr1_3:72967732-72967751 | None:intergenic | 45.0% | |
| CTCAACACTGAAGGAGATGA+AGG | + | chr1_3:72967730-72967749 | Msa0139320:CDS | 45.0% | |
| GCTGCTGGATACTCTTCATT+AGG | + | chr1_3:72967752-72967771 | Msa0139320:CDS | 45.0% | |
| !!! | GGTATTTTGGCCTTGGGATT+TGG | + | chr1_3:72967892-72967911 | Msa0139320:intron | 45.0% |
| TGCACATTCACCAAATCCCA+AGG | - | chr1_3:72967905-72967924 | None:intergenic | 45.0% | |
| GGTATCCAAGACCTTCTATC+CGG | - | chr1_3:72968126-72968145 | None:intergenic | 45.0% | |
| GGATAGAAGGTCTTGGATAC+CGG | + | chr1_3:72968125-72968144 | Msa0139320:three_prime_UTR | 45.0% | |
| AGAATGAACAACTGATCCGC+CGG | - | chr1_3:72968147-72968166 | None:intergenic | 45.0% | |
| GCAACAGGGAAGAAGGAACA+AGG | + | chr1_3:72964488-72964507 | Msa0139320:five_prime_UTR | 50.0% | |
| CATCTCGGTATTGCCGAAGA+AGG | - | chr1_3:72964592-72964611 | None:intergenic | 50.0% | |
| TCTTCGGCAATACCGAGATG+CGG | + | chr1_3:72964592-72964611 | Msa0139320:CDS | 50.0% | |
| !! | ATGCTTGGTCTTGATGCTGC+TGG | + | chr1_3:72965230-72965249 | Msa0139320:intron | 50.0% |
| ! | TTCACGGTTTGGGATGTTGG+AGG | + | chr1_3:72965801-72965820 | Msa0139320:CDS | 50.0% |
| AGTCTGGACCGTGAGAGAAT+TGG | + | chr1_3:72966067-72966086 | Msa0139320:CDS | 50.0% | |
| GTCTGGACCGTGAGAGAATT+GGG | + | chr1_3:72966068-72966087 | Msa0139320:CDS | 50.0% | |
| GATACGCATGCACGTGCAAA+AGG | - | chr1_3:72966555-72966574 | None:intergenic | 50.0% | |
| !! | TGGTTGGTGGTCTATTGGCA+GGG | - | chr1_3:72966687-72966706 | None:intergenic | 50.0% |
| !!! | GGAATGGCATGGCGGATTTT+TGG | + | chr1_3:72966993-72967012 | Msa0139320:intron | 50.0% |
| ! | GCTGCAAGGGCGTGTTTATA+TGG | + | chr1_3:72967069-72967088 | Msa0139320:intron | 50.0% |
| ! | GCAAGGGCGTGTTTATATGG+TGG | + | chr1_3:72967072-72967091 | Msa0139320:intron | 50.0% |
| !! | AGGGAAGTGTGTGACGGATT+AGG | + | chr1_3:72967617-72967636 | Msa0139320:CDS | 50.0% |
| ! | ACAAGGCACCTGTGCACTTA+AGG | + | chr1_3:72967673-72967692 | Msa0139320:CDS | 50.0% |
| ! | CAAGGCACCTGTGCACTTAA+GGG | + | chr1_3:72967674-72967693 | Msa0139320:CDS | 50.0% |
| ACCTGTGCACTTAAGGGTGA+TGG | + | chr1_3:72967680-72967699 | Msa0139320:CDS | 50.0% | |
| GCCTTTATGAGGGTTTGGAC+TGG | + | chr1_3:72967702-72967721 | Msa0139320:CDS | 50.0% | |
| CTGGTTGTCCTCAACACTGA+AGG | + | chr1_3:72967721-72967740 | Msa0139320:CDS | 50.0% | |
| GATACCCCACGTTAAGTGCA+CGG | + | chr1_3:72968097-72968116 | Msa0139320:three_prime_UTR | 50.0% | |
| ATACCCCACGTTAAGTGCAC+GGG | + | chr1_3:72968098-72968117 | Msa0139320:three_prime_UTR | 50.0% | |
| TAGAAGGTCTTGGATACCGG+CGG | + | chr1_3:72968128-72968147 | Msa0139320:three_prime_UTR | 50.0% | |
| CTTCGGCAATACCGAGATGC+GGG | + | chr1_3:72964593-72964612 | Msa0139320:CDS | 55.0% | |
| ! | CATGCACGTGCAAAAGGTGC+AGG | - | chr1_3:72966549-72966568 | None:intergenic | 55.0% |
| !! | GGTTGGTGGTCTATTGGCAG+GGG | - | chr1_3:72966686-72966705 | None:intergenic | 55.0% |
| !! | GTGGTTGGTGGTCTATTGGC+AGG | - | chr1_3:72966688-72966707 | None:intergenic | 55.0% |
| !! | AGCCTATGGTGTTGCCATGG+CGG | - | chr1_3:72967052-72967071 | None:intergenic | 55.0% |
| !! | TGCAGCCTATGGTGTTGCCA+TGG | - | chr1_3:72967055-72967074 | None:intergenic | 55.0% |
| TGGCAACACCATAGGCTGCA+AGG | + | chr1_3:72967055-72967074 | Msa0139320:intron | 55.0% | |
| GGCAACACCATAGGCTGCAA+GGG | + | chr1_3:72967056-72967075 | Msa0139320:intron | 55.0% | |
| AAACACGCCCTTGCAGCCTA+TGG | - | chr1_3:72967066-72967085 | None:intergenic | 55.0% | |
| ! | ACGGCAAGGGAAGTGTGTGA+CGG | + | chr1_3:72967611-72967630 | Msa0139320:CDS | 55.0% |
| GCCATCACCCTTAAGTGCAC+AGG | - | chr1_3:72967684-72967703 | None:intergenic | 55.0% | |
| CTGAAGGAGATGAAGGCTGC+TGG | + | chr1_3:72967737-72967756 | Msa0139320:CDS | 55.0% | |
| GTACCCGTGCACTTAACGTG+GGG | - | chr1_3:72968104-72968123 | None:intergenic | 55.0% | |
| GGTACCCGTGCACTTAACGT+GGG | - | chr1_3:72968105-72968124 | None:intergenic | 55.0% | |
| CACGTTAAGTGCACGGGTAC+CGG | + | chr1_3:72968104-72968123 | Msa0139320:three_prime_UTR | 55.0% | |
| !! | GGGTACCGGATAGAAGGTCT+TGG | + | chr1_3:72968118-72968137 | Msa0139320:three_prime_UTR | 55.0% |
| TCGGGGTTGGGTAGCTCAAC+TGG | + | chr1_3:72965059-72965078 | Msa0139320:intron | 60.0% | |
| !! | GCCTATGGTGTTGCCATGGC+GGG | - | chr1_3:72967051-72967070 | None:intergenic | 60.0% |
| ! | AGAGAGGAGCGATGACGGCA+AGG | + | chr1_3:72967597-72967616 | Msa0139320:intron | 60.0% |
| ! | GAGAGGAGCGATGACGGCAA+GGG | + | chr1_3:72967598-72967617 | Msa0139320:intron | 60.0% |
| CGGTACCCGTGCACTTAACG+TGG | - | chr1_3:72968106-72968125 | None:intergenic | 60.0% | |
| !! | GTGCACGGGTACCGGATAGA+AGG | + | chr1_3:72968112-72968131 | Msa0139320:three_prime_UTR | 60.0% |
| ATGGGACCATGGCGCTGCCA+TGG | + | chr1_3:72966969-72966988 | Msa0139320:intron | 65.0% | |
| ATTCCGCCATGGCAGCGCCA+TGG | - | chr1_3:72966978-72966997 | None:intergenic | 65.0% | |
| ! | ATGGCGCTGCCATGGCGGAA+TGG | + | chr1_3:72966977-72966996 | Msa0139320:intron | 65.0% |
| ! | GCTGCCATGGCGGAATGGCA+TGG | + | chr1_3:72966982-72967001 | Msa0139320:intron | 65.0% |
| ! | GCCATGGCGGAATGGCATGG+CGG | + | chr1_3:72966985-72967004 | Msa0139320:intron | 65.0% |
| TCCGCCATGCCATTCCGCCA+TGG | - | chr1_3:72966989-72967008 | None:intergenic | 65.0% | |
| GCCCGCCATGGCAACACCAT+AGG | + | chr1_3:72967047-72967066 | Msa0139320:intron | 65.0% | |
| GGACCATGGCGCTGCCATGG+CGG | + | chr1_3:72966972-72966991 | Msa0139320:intron | 70.0% | |
| !! | TATGACGGGGGTGCCCGCCA+TGG | + | chr1_3:72967035-72967054 | Msa0139320:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 72964418 | 72968719 | 72964418 | ID=Msa0139320;Name=Msa0139320 |
| chr1_3 | mRNA | 72964418 | 72968719 | 72964418 | ID=Msa0139320-mRNA-1;Parent=Msa0139320;Name=Msa0139320-mRNA-1;_AED=0.11;_eAED=0.11;_QI=140|0.85|0.87|1|0.71|0.62|8|502|178 |
| chr1_3 | exon | 72964418 | 72964614 | 72964418 | ID=Msa0139320-mRNA-1:exon:25366;Parent=Msa0139320-mRNA-1 |
| chr1_3 | exon | 72965275 | 72965314 | 72965275 | ID=Msa0139320-mRNA-1:exon:25367;Parent=Msa0139320-mRNA-1 |
| chr1_3 | exon | 72965763 | 72965878 | 72965763 | ID=Msa0139320-mRNA-1:exon:25368;Parent=Msa0139320-mRNA-1 |
| chr1_3 | exon | 72966052 | 72966111 | 72966052 | ID=Msa0139320-mRNA-1:exon:25369;Parent=Msa0139320-mRNA-1 |
| chr1_3 | exon | 72966202 | 72966267 | 72966202 | ID=Msa0139320-mRNA-1:exon:25370;Parent=Msa0139320-mRNA-1 |
| chr1_3 | exon | 72967599 | 72967804 | 72967599 | ID=Msa0139320-mRNA-1:exon:25371;Parent=Msa0139320-mRNA-1 |
| chr1_3 | exon | 72967893 | 72968356 | 72967893 | ID=Msa0139320-mRNA-1:exon:25372;Parent=Msa0139320-mRNA-1 |
| chr1_3 | exon | 72968690 | 72968719 | 72968690 | ID=Msa0139320-mRNA-1:exon:25373;Parent=Msa0139320-mRNA-1 |
| chr1_3 | five_prime_UTR | 72964418 | 72964557 | 72964418 | ID=Msa0139320-mRNA-1:five_prime_utr;Parent=Msa0139320-mRNA-1 |
| chr1_3 | CDS | 72964558 | 72964614 | 72964558 | ID=Msa0139320-mRNA-1:cds;Parent=Msa0139320-mRNA-1 |
| chr1_3 | CDS | 72965275 | 72965314 | 72965275 | ID=Msa0139320-mRNA-1:cds;Parent=Msa0139320-mRNA-1 |
| chr1_3 | CDS | 72965763 | 72965878 | 72965763 | ID=Msa0139320-mRNA-1:cds;Parent=Msa0139320-mRNA-1 |
| chr1_3 | CDS | 72966052 | 72966111 | 72966052 | ID=Msa0139320-mRNA-1:cds;Parent=Msa0139320-mRNA-1 |
| chr1_3 | CDS | 72966202 | 72966267 | 72966202 | ID=Msa0139320-mRNA-1:cds;Parent=Msa0139320-mRNA-1 |
| chr1_3 | CDS | 72967599 | 72967796 | 72967599 | ID=Msa0139320-mRNA-1:cds;Parent=Msa0139320-mRNA-1 |
| chr1_3 | three_prime_UTR | 72967797 | 72967804 | 72967797 | ID=Msa0139320-mRNA-1:three_prime_utr;Parent=Msa0139320-mRNA-1 |
| chr1_3 | three_prime_UTR | 72967893 | 72968356 | 72967893 | ID=Msa0139320-mRNA-1:three_prime_utr;Parent=Msa0139320-mRNA-1 |
| chr1_3 | three_prime_UTR | 72968690 | 72968719 | 72968690 | ID=Msa0139320-mRNA-1:three_prime_utr;Parent=Msa0139320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
