Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139380 | sp|P40343|VPS27_YEAST | 44.615 | 65 | 36 | 0 | 5 | 69 | 164 | 228 | 1.83e-13 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139380 | A0A072URX1 | 97.818 | 275 | 6 | 0 | 3 | 277 | 2 | 276 | 0.0 | 561 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035120 | Msa0139380 | 0.810157 | 1.325540e-50 | -8.615850e-47 |
| Msa0043500 | Msa0139380 | 0.811682 | 6.195475e-51 | -8.615850e-47 |
| Msa0043650 | Msa0139380 | 0.804152 | 2.477800e-49 | -8.615850e-47 |
| Msa0054820 | Msa0139380 | 0.810031 | 1.410744e-50 | -8.615850e-47 |
| Msa0056450 | Msa0139380 | 0.824642 | 7.226423e-54 | -8.615850e-47 |
| Msa0089980 | Msa0139380 | 0.824102 | 9.682487e-54 | -8.615850e-47 |
| Msa0090010 | Msa0139380 | 0.826191 | 3.105882e-54 | -8.615850e-47 |
| Msa0106620 | Msa0139380 | 0.822046 | 2.920231e-53 | -8.615850e-47 |
| Msa0106710 | Msa0139380 | 0.809454 | 1.877040e-50 | -8.615850e-47 |
| Msa0108410 | Msa0139380 | 0.812442 | 4.231688e-51 | -8.615850e-47 |
| Msa0112270 | Msa0139380 | 0.814861 | 1.241841e-51 | -8.615850e-47 |
| Msa0139380 | Msa0144360 | 0.828152 | 1.053657e-54 | -8.615850e-47 |
| Msa0139380 | Msa0187030 | 0.814969 | 1.174878e-51 | -8.615850e-47 |
| Msa0139380 | Msa0225220 | 0.819068 | 1.410333e-52 | -8.615850e-47 |
| Msa0139380 | Msa0230370 | 0.810028 | 1.412770e-50 | -8.615850e-47 |
| Msa0139380 | Msa0342010 | 0.841091 | 5.864651e-58 | -8.615850e-47 |
| Msa0139380 | Msa0379610 | 0.814403 | 1.568601e-51 | -8.615850e-47 |
| Msa0139380 | Msa0403640 | 0.803840 | 2.876218e-49 | -8.615850e-47 |
| Msa0139380 | Msa0432160 | 0.805591 | 1.239508e-49 | -8.615850e-47 |
| Msa0139380 | Msa0450400 | -0.808346 | 3.240355e-50 | -8.615850e-47 |
| Msa0139380 | Msa0476680 | 0.810100 | 1.363094e-50 | -8.615850e-47 |
| Msa0139380 | Msa0485240 | 0.801347 | 9.398280e-49 | -8.615850e-47 |
| Msa0139380 | Msa0518030 | 0.810202 | 1.295800e-50 | -8.615850e-47 |
| Msa0139380 | Msa0521010 | 0.811774 | 5.916592e-51 | -8.615850e-47 |
| Msa0139380 | Msa0521670 | 0.804832 | 1.787560e-49 | -8.615850e-47 |
| Msa0139380 | Msa0556010 | 0.813874 | 2.052470e-51 | -8.615850e-47 |
| Msa0139380 | Msa0576680 | 0.803104 | 4.087564e-49 | -8.615850e-47 |
| Msa0139380 | Msa0638350 | 0.812046 | 5.162024e-51 | -8.615850e-47 |
| Msa0139380 | Msa0638360 | 0.806690 | 7.278749e-50 | -8.615850e-47 |
| Msa0139380 | Msa0661320 | 0.817915 | 2.573648e-52 | -8.615850e-47 |
| Msa0139380 | Msa0692880 | 0.812477 | 4.157264e-51 | -8.615850e-47 |
| Msa0139380 | Msa0702720 | 0.808442 | 3.091543e-50 | -8.615850e-47 |
| Msa0139380 | Msa0703220 | 0.819639 | 1.044757e-52 | -8.615850e-47 |
| Msa0139380 | Msa0751260 | 0.833814 | 4.295355e-56 | -8.615850e-47 |
| Msa0139380 | Msa0795070 | 0.810857 | 9.355436e-51 | -8.615850e-47 |
| Msa0139380 | Msa0868160 | 0.813330 | 2.703891e-51 | -8.615850e-47 |
| Msa0139380 | Msa0900620 | 0.804382 | 2.218566e-49 | -8.615850e-47 |
| Msa0139380 | Msa0937020 | 0.803021 | 4.251685e-49 | -8.615850e-47 |
| Msa0139380 | Msa1027990 | 0.808228 | 3.434234e-50 | -8.615850e-47 |
| Msa0139380 | Msa1028280 | 0.814444 | 1.535757e-51 | -8.615850e-47 |
| Msa0139380 | Msa1034500 | 0.830993 | 2.146750e-55 | -8.615850e-47 |
| Msa0139380 | Msa1038080 | 0.836452 | 9.281408e-57 | -8.615850e-47 |
| Msa0139380 | Msa1076560 | 0.802071 | 6.674968e-49 | -8.615850e-47 |
| Msa0139380 | Msa1129690 | 0.823066 | 1.691715e-53 | -8.615850e-47 |
| Msa0139380 | Msa1205790 | 0.804704 | 1.901468e-49 | -8.615850e-47 |
| Msa0139380 | Msa1219900 | 0.803430 | 3.498884e-49 | -8.615850e-47 |
| Msa0139380 | Msa1267020 | 0.988414 | 6.317736e-174 | -8.615850e-47 |
| Msa0139380 | Msa1307870 | 0.828351 | 9.434625e-55 | -8.615850e-47 |
| Msa0139380 | Msa1365760 | 0.811132 | 8.158112e-51 | -8.615850e-47 |
| Msa0139380 | Msa1393820 | 0.823697 | 1.204421e-53 | -8.615850e-47 |
| Msa0139380 | Msa1409490 | 0.802167 | 6.378377e-49 | -8.615850e-47 |
| Msa0139380 | Msa1413610 | 0.814435 | 1.542666e-51 | -8.615850e-47 |
| Msa0139380 | Msa1418240 | 0.807486 | 4.938170e-50 | -8.615850e-47 |
| Msa0139380 | Msa1446780 | 0.841248 | 5.331652e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139380 | MtrunA17_Chr4g0069731 | 97.719 | 263 | 6 | 0 | 3 | 265 | 2 | 264 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139380 | AT2G26210.1 | 52.660 | 188 | 64 | 4 | 81 | 265 | 4 | 169 | 2.51e-55 | 179 |
| Msa0139380 | AT2G26210.7 | 52.660 | 188 | 64 | 4 | 81 | 265 | 4 | 169 | 2.51e-55 | 179 |
| Msa0139380 | AT2G26210.5 | 52.660 | 188 | 64 | 4 | 81 | 265 | 4 | 169 | 2.51e-55 | 179 |
| Msa0139380 | AT2G26210.6 | 52.660 | 188 | 64 | 4 | 81 | 265 | 4 | 169 | 2.51e-55 | 179 |
| Msa0139380 | AT2G26210.4 | 52.660 | 188 | 64 | 4 | 81 | 265 | 4 | 169 | 2.51e-55 | 179 |
| Msa0139380 | AT2G26210.2 | 57.432 | 148 | 52 | 2 | 118 | 265 | 10 | 146 | 1.76e-50 | 166 |
| Msa0139380 | AT2G26210.3 | 57.432 | 148 | 52 | 2 | 118 | 265 | 10 | 146 | 1.76e-50 | 166 |
Find 91 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTAGTATATAAGAAAT+TGG | 0.152950 | 1_3:+73045094 | Msa0139380:five_prime_UTR |
| ACTGCCATTGGCAGAATTTA+AGG | 0.172728 | 1_3:-73049218 | None:intergenic |
| CAGATTGATTATGAAGTTAA+TGG | 0.250549 | 1_3:+73048704 | Msa0139380:CDS |
| CAACACATCGTGCTGCTTCT+TGG | 0.262025 | 1_3:-73045176 | None:intergenic |
| GTAATGTTTGAAGCTTTCTT+TGG | 0.275299 | 1_3:-73049478 | None:intergenic |
| ATGTAGGCTTTACCACAATT+TGG | 0.291221 | 1_3:+73045692 | Msa0139380:intron |
| TTCAAACATTACCGGCATTT+AGG | 0.291997 | 1_3:+73049489 | Msa0139380:CDS |
| CATTAACTTCATAATCAATC+TGG | 0.315458 | 1_3:-73048703 | None:intergenic |
| TACACCAAACAAATTTAATA+TGG | 0.327197 | 1_3:-73049647 | None:intergenic |
| CCTAAACTTGTTCGTGGAAC+TGG | 0.331285 | 1_3:-73047717 | None:intergenic |
| TAGGTTGTGATACGGCTCTC+TGG | 0.333681 | 1_3:+73049508 | Msa0139380:CDS |
| GGGACTGTCTTTATTGCATT+TGG | 0.335267 | 1_3:+73049006 | Msa0139380:CDS |
| CCAGTTCCACGAACAAGTTT+AGG | 0.352658 | 1_3:+73047717 | Msa0139380:CDS |
| AGATTGATTATGAAGTTAAT+GGG | 0.360777 | 1_3:+73048705 | Msa0139380:CDS |
| TAATGTTTGAAGCTTTCTTT+GGG | 0.365594 | 1_3:-73049477 | None:intergenic |
| TTTCTTTGGGGAACCACATA+AGG | 0.377863 | 1_3:-73049464 | None:intergenic |
| AATAAGAATTATTACCTCTT+GGG | 0.378917 | 1_3:-73047549 | None:intergenic |
| TTATCCATATTAAATTTGTT+TGG | 0.386424 | 1_3:+73049643 | Msa0139380:three_prime_UTR |
| AAATCTTAAAATCATCCATT+AGG | 0.391992 | 1_3:-73049787 | None:intergenic |
| GTTGCAGTTTCAACACCTTC+AGG | 0.398198 | 1_3:+73045205 | Msa0139380:CDS |
| GATCTCAACAATAAATTTGT+CGG | 0.401146 | 1_3:-73044983 | None:intergenic |
| TTTGATGGAGCTGTAACAAC+TGG | 0.407165 | 1_3:-73047650 | None:intergenic |
| AAAACCTGACTTACCTTTAG+TGG | 0.419439 | 1_3:-73049894 | None:intergenic |
| TGCTAATTACAGAGATAAGC+AGG | 0.440187 | 1_3:+73048985 | Msa0139380:CDS |
| AAATTAGTATATAAGAAATT+GGG | 0.445778 | 1_3:+73045095 | Msa0139380:five_prime_UTR |
| ATCAATCTGGGGTCTGTTTG+AGG | 0.446943 | 1_3:-73048690 | None:intergenic |
| GGGAACTGCAGAAGAGGAAG+GGG | 0.451239 | 1_3:-73047528 | None:intergenic |
| CGAACATTCATCGGATCAAA+TGG | 0.459353 | 1_3:+73045588 | Msa0139380:CDS |
| CTTAAAATCATCCATTAGGA+TGG | 0.459832 | 1_3:-73049783 | None:intergenic |
| GACCCCACTAAAGGTAAGTC+AGG | 0.465598 | 1_3:+73049890 | Msa0139380:three_prime_UTR |
| AAACCTGACTTACCTTTAGT+GGG | 0.478181 | 1_3:-73049893 | None:intergenic |
| AACCCTGGTCATGTAACTAC+TGG | 0.479367 | 1_3:+73048665 | Msa0139380:CDS |
| AAGAAAGCTTCAAACATTAC+CGG | 0.486303 | 1_3:+73049481 | Msa0139380:CDS |
| ATCTTTCTCTGTACCACCCT+GGG | 0.487155 | 1_3:+73049718 | Msa0139380:three_prime_UTR |
| ATTAACTTCATAATCAATCT+GGG | 0.488966 | 1_3:-73048702 | None:intergenic |
| GCAGATAATAACCTTGCATC+AGG | 0.489262 | 1_3:+73047455 | Msa0139380:CDS |
| TGGGGAACTGCAGAAGAGGA+AGG | 0.489945 | 1_3:-73047530 | None:intergenic |
| AGCATCATTGTCGTTGTTGT+GGG | 0.498777 | 1_3:+73045551 | Msa0139380:intron |
| CAGCATCATTGTCGTTGTTG+TGG | 0.502093 | 1_3:+73045550 | Msa0139380:intron |
| TCATTGCTTCATTGAAGAAG+AGG | 0.508340 | 1_3:-73045017 | None:intergenic |
| AAAATGAAGATGCAAGAAAG+TGG | 0.508600 | 1_3:+73049394 | Msa0139380:CDS |
| AGGTTGTGATACGGCTCTCT+GGG | 0.510451 | 1_3:+73049509 | Msa0139380:CDS |
| TCCCTACCTAAACTTGTTCG+TGG | 0.524149 | 1_3:-73047723 | None:intergenic |
| CCTTCCTTAAATTCTGCCAA+TGG | 0.524419 | 1_3:+73049214 | Msa0139380:CDS |
| CCGGCATTTAGGTTGTGATA+CGG | 0.526691 | 1_3:+73049500 | Msa0139380:CDS |
| GCAAGGTTATTATCTGCAGT+TGG | 0.531061 | 1_3:-73047449 | None:intergenic |
| TTTCAACACCTTCAGGAGAC+GGG | 0.531812 | 1_3:+73045212 | Msa0139380:CDS |
| CCTTTGGCACAGATCTGGGA+AGG | 0.533065 | 1_3:+73047334 | Msa0139380:intron |
| GGGGAACTGCAGAAGAGGAA+GGG | 0.533126 | 1_3:-73047529 | None:intergenic |
| ATAAGAATTATTACCTCTTG+GGG | 0.540980 | 1_3:-73047548 | None:intergenic |
| CATCGTGCTGCTTCTTGGAA+AGG | 0.541545 | 1_3:-73045171 | None:intergenic |
| AAAGTGGAGCAATGGATCAA+AGG | 0.543196 | 1_3:+73049410 | Msa0139380:CDS |
| TATCTTTCTCTGTACCACCC+TGG | 0.545767 | 1_3:+73049717 | Msa0139380:three_prime_UTR |
| ATCCGGGCGAAAACTGCCAT+TGG | 0.547384 | 1_3:-73049230 | None:intergenic |
| AACACCTTTAGACTGTGCTC+CGG | 0.550578 | 1_3:+73049351 | Msa0139380:CDS |
| CTCTTGGGGAACTGCAGAAG+AGG | 0.555642 | 1_3:-73047534 | None:intergenic |
| TGCAGTTCTACGTTTAACCC+TGG | 0.560152 | 1_3:+73048650 | Msa0139380:intron |
| GATGCAAGAAAGTGGAGCAA+TGG | 0.564742 | 1_3:+73049402 | Msa0139380:CDS |
| ATTGTGCAGCGAACATTCAT+CGG | 0.567403 | 1_3:+73045579 | Msa0139380:CDS |
| CTCTTCTGCAGTTCCCCAAG+AGG | 0.570434 | 1_3:+73047535 | Msa0139380:CDS |
| GAAAGGAAAGACCCCACTAA+AGG | 0.571512 | 1_3:+73049881 | Msa0139380:three_prime_UTR |
| GTTTCAACACCTTCAGGAGA+CGG | 0.574200 | 1_3:+73045211 | Msa0139380:CDS |
| GCTGCTTCTTGGAAAGGAGG+AGG | 0.581803 | 1_3:-73045165 | None:intergenic |
| ACTCTTTAACGCCTGATGCA+AGG | 0.582993 | 1_3:-73047466 | None:intergenic |
| CGTGCTGCTTCTTGGAAAGG+AGG | 0.583012 | 1_3:-73045168 | None:intergenic |
| TTTGTGTTGAACCTTGGGGA+TGG | 0.583203 | 1_3:+73049841 | Msa0139380:three_prime_UTR |
| TTAAAATCATCCATTAGGAT+GGG | 0.584176 | 1_3:-73049782 | None:intergenic |
| GGAACTGCAGAAGAGGAAGG+GGG | 0.589595 | 1_3:-73047527 | None:intergenic |
| GTAGCCGGAGCACAGTCTAA+AGG | 0.590754 | 1_3:-73049355 | None:intergenic |
| GGCGTTAAAGAGTGTAAGTG+TGG | 0.592771 | 1_3:+73047476 | Msa0139380:CDS |
| AAAGCATACCCGTCTCCTGA+AGG | 0.594623 | 1_3:-73045220 | None:intergenic |
| CCGTATCACAACCTAAATGC+CGG | 0.600865 | 1_3:-73049500 | None:intergenic |
| TTCGAGTAAATGCCAAATTG+TGG | 0.602887 | 1_3:-73045704 | None:intergenic |
| GTACCAGTAGTTACATGACC+AGG | 0.607265 | 1_3:-73048668 | None:intergenic |
| TGATTATGAAGTTAATGGGG+AGG | 0.608490 | 1_3:+73048709 | Msa0139380:CDS |
| CAAATCATTGCAGAGTACAA+AGG | 0.608841 | 1_3:-73045046 | None:intergenic |
| CCATTGGCAGAATTTAAGGA+AGG | 0.611738 | 1_3:-73049214 | None:intergenic |
| CTGATTGTTTCAACAACTCG+CGG | 0.618861 | 1_3:+73045741 | Msa0139380:CDS |
| GTCTATGATGTGTCTTACAT+AGG | 0.621015 | 1_3:-73049619 | None:intergenic |
| GGTACAGAGAAAGATAGTAC+AGG | 0.630741 | 1_3:-73049710 | None:intergenic |
| GTACGACAAACTTCTTCAGA+CGG | 0.636601 | 1_3:+73047359 | Msa0139380:CDS |
| TGGAGCTGTAACAACTGGGA+TGG | 0.638430 | 1_3:-73047645 | None:intergenic |
| GATTGATTATGAAGTTAATG+GGG | 0.643505 | 1_3:+73048706 | Msa0139380:CDS |
| TTTCATTCTCATGGATTCGG+GGG | 0.648019 | 1_3:+73049149 | Msa0139380:CDS |
| AACCTGACTTACCTTTAGTG+GGG | 0.653802 | 1_3:-73049892 | None:intergenic |
| TTAACTTCATAATCAATCTG+GGG | 0.666046 | 1_3:-73048701 | None:intergenic |
| GCTAATTACAGAGATAAGCA+GGG | 0.669971 | 1_3:+73048986 | Msa0139380:CDS |
| TTGATGGAGCTGTAACAACT+GGG | 0.683377 | 1_3:-73047649 | None:intergenic |
| GGAGCTTCACAAATGCAAAG+AGG | 0.686423 | 1_3:-73047503 | None:intergenic |
| TACCAGTAGTTACATGACCA+GGG | 0.703145 | 1_3:-73048667 | None:intergenic |
| AATGTTTGAAGCTTTCTTTG+GGG | 0.720317 | 1_3:-73049476 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAGTATATAAGAAAT+TGG | + | chr1_3:73045094-73045113 | Msa0139380:five_prime_UTR | 10.0% |
| !! | AAATTAGTATATAAGAAATT+GGG | + | chr1_3:73045095-73045114 | Msa0139380:five_prime_UTR | 10.0% |
| !!! | AAAAAATATCTAGAATATTA+AGG | - | chr1_3:73046688-73046707 | None:intergenic | 10.0% |
| !!! | ATATATATTTTTTTGTCAAT+TGG | - | chr1_3:73048044-73048063 | None:intergenic | 10.0% |
| !! | GAAATTATTATTAATTAAAG+TGG | + | chr1_3:73048214-73048233 | Msa0139380:intron | 10.0% |
| !!! | AGATTTTTTAATTTCTTATA+TGG | + | chr1_3:73048751-73048770 | Msa0139380:intron | 10.0% |
| !! | TTTGATTATTCAAATTTGAT+CGG | + | chr1_3:73045279-73045298 | Msa0139380:intron | 15.0% |
| !! | TATTCTTAACTGATAAATTT+GGG | - | chr1_3:73045336-73045355 | None:intergenic | 15.0% |
| !! | TTATTCTTAACTGATAAATT+TGG | - | chr1_3:73045337-73045356 | None:intergenic | 15.0% |
| !!! | ATTATGTTTGTAAATTTTAC+TGG | + | chr1_3:73045483-73045502 | Msa0139380:intron | 15.0% |
| !!! | AATTTTTGTTTTTTAACTTC+AGG | + | chr1_3:73045615-73045634 | Msa0139380:intron | 15.0% |
| !!! | ATTTTTGTTTTTTAACTTCA+GGG | + | chr1_3:73045616-73045635 | Msa0139380:intron | 15.0% |
| !!! | ATTTTTATGTGTGTATTATA+AGG | + | chr1_3:73045831-73045850 | Msa0139380:intron | 15.0% |
| !! | AAATTACATTAATTAAGCTT+AGG | + | chr1_3:73045856-73045875 | Msa0139380:intron | 15.0% |
| !! | TGGTTTATAATATAACATTA+TGG | + | chr1_3:73046071-73046090 | Msa0139380:intron | 15.0% |
| !! | ATTACATATGATTATATGAA+TGG | + | chr1_3:73047154-73047173 | Msa0139380:intron | 15.0% |
| !!! | TTTATAGTTTTGTTTTTTGA+GGG | + | chr1_3:73048921-73048940 | Msa0139380:intron | 15.0% |
| !!! | TTATCCATATTAAATTTGTT+TGG | + | chr1_3:73049643-73049662 | Msa0139380:three_prime_UTR | 15.0% |
| !!! | TGACATTTTCAACAAAATTA+GGG | - | chr1_3:73045130-73045149 | None:intergenic | 20.0% |
| !!! | TTGACATTTTCAACAAAATT+AGG | - | chr1_3:73045131-73045150 | None:intergenic | 20.0% |
| !! | AGTTAGACTAAAATTTGTAT+TGG | + | chr1_3:73045405-73045424 | Msa0139380:intron | 20.0% |
| !!! | ATTATTTCTCAATTCTCATT+TGG | + | chr1_3:73045797-73045816 | Msa0139380:intron | 20.0% |
| !! | ATCTTCAATTCTTCATTATT+AGG | - | chr1_3:73046287-73046306 | None:intergenic | 20.0% |
| !! | ATGTTAAATTATGATATGTC+AGG | + | chr1_3:73046308-73046327 | Msa0139380:intron | 20.0% |
| !!! | AGTTCCTAATTTCTTTTAAA+CGG | - | chr1_3:73046404-73046423 | None:intergenic | 20.0% |
| !!! | GTCTTTTTTAATTAAAAGTG+AGG | + | chr1_3:73046549-73046568 | Msa0139380:intron | 20.0% |
| !! | ATAGGAAAAAAAGATTATGA+AGG | - | chr1_3:73046579-73046598 | None:intergenic | 20.0% |
| !!! | CATAATCTTTTTTTCCTATT+TGG | + | chr1_3:73046580-73046599 | Msa0139380:intron | 20.0% |
| !!! | ACTCTTAAATTGTTGTTTTT+CGG | - | chr1_3:73046885-73046904 | None:intergenic | 20.0% |
| !! | TTCTCTAATAAATATGTTGA+GGG | - | chr1_3:73046958-73046977 | None:intergenic | 20.0% |
| !! | TTTCTCTAATAAATATGTTG+AGG | - | chr1_3:73046959-73046978 | None:intergenic | 20.0% |
| !! | AAAATTGTAAGTCCTTTAAA+AGG | + | chr1_3:73046976-73046995 | Msa0139380:intron | 20.0% |
| !! | CATTACAATAAGAAAGAAAA+TGG | - | chr1_3:73047253-73047272 | None:intergenic | 20.0% |
| !! | ACTTGAGATCAAAATTATTT+AGG | + | chr1_3:73047288-73047307 | Msa0139380:intron | 20.0% |
| !! | TATACATTACAAATTTCCTT+TGG | + | chr1_3:73047318-73047337 | Msa0139380:intron | 20.0% |
| !! | AATAAGAATTATTACCTCTT+GGG | - | chr1_3:73047552-73047571 | None:intergenic | 20.0% |
| !!! | ATATTTTTTTGTCAATTGGA+AGG | - | chr1_3:73048040-73048059 | None:intergenic | 20.0% |
| !!! | TTTTTCAAAAAAATTGGAGA+AGG | + | chr1_3:73048189-73048208 | Msa0139380:intron | 20.0% |
| !!! | TTTTCAAAAAAATTGGAGAA+GGG | + | chr1_3:73048190-73048209 | Msa0139380:intron | 20.0% |
| !! | GAATTTCTTACTAAATATTC+TGG | + | chr1_3:73048349-73048368 | Msa0139380:intron | 20.0% |
| !! | ATTAACTTCATAATCAATCT+GGG | - | chr1_3:73048705-73048724 | None:intergenic | 20.0% |
| !! | AGATTGATTATGAAGTTAAT+GGG | + | chr1_3:73048705-73048724 | Msa0139380:CDS | 20.0% |
| !! | CTCAAAAAACAAAACTATAA+AGG | - | chr1_3:73048922-73048941 | None:intergenic | 20.0% |
| !!! | CTTTATAGTTTTGTTTTTTG+AGG | + | chr1_3:73048920-73048939 | Msa0139380:intron | 20.0% |
| !!! | TAGTTTTCTTAATCATATAG+TGG | + | chr1_3:73049068-73049087 | Msa0139380:intron | 20.0% |
| !!! | CTAATTTTAATATTCTGTGT+AGG | + | chr1_3:73049098-73049117 | Msa0139380:intron | 20.0% |
| !! | TACACCAAACAAATTTAATA+TGG | - | chr1_3:73049650-73049669 | None:intergenic | 20.0% |
| !! | AAATCTTAAAATCATCCATT+AGG | - | chr1_3:73049790-73049809 | None:intergenic | 20.0% |
| !!! | AATGGATGATTTTAAGATTT+AGG | + | chr1_3:73049790-73049809 | Msa0139380:three_prime_UTR | 20.0% |
| !!! | ATGGATGATTTTAAGATTTA+GGG | + | chr1_3:73049791-73049810 | Msa0139380:three_prime_UTR | 20.0% |
| !!! | AAAATTGTTATTTTGGGTCA+AGG | - | chr1_3:73044947-73044966 | None:intergenic | 25.0% |
| ! | GATCTCAACAATAAATTTGT+CGG | - | chr1_3:73044986-73045005 | None:intergenic | 25.0% |
| ! | ATCAAATCAAATTCCGAAAT+TGG | - | chr1_3:73045265-73045284 | None:intergenic | 25.0% |
| ! | TTATTCAAATTTGATCGGAT+CGG | + | chr1_3:73045284-73045303 | Msa0139380:intron | 25.0% |
| !!! | AACTGATAAATTTGGGATTT+TGG | - | chr1_3:73045329-73045348 | None:intergenic | 25.0% |
| ! | AAAATCATCTTATGCATGAA+TGG | + | chr1_3:73045454-73045473 | Msa0139380:intron | 25.0% |
| ! | CATCACTATAAAATTCATCA+AGG | - | chr1_3:73045663-73045682 | None:intergenic | 25.0% |
| !!! | AGTGATGTTTTTTTGTATGT+AGG | + | chr1_3:73045676-73045695 | Msa0139380:intron | 25.0% |
| ! | ATGATACGTTATCACATTTA+TGG | - | chr1_3:73045930-73045949 | None:intergenic | 25.0% |
| !! | AAATGTGATAACGTATCATT+AGG | + | chr1_3:73045931-73045950 | Msa0139380:intron | 25.0% |
| ! | AAGAAATTCTTTCTAATGTG+AGG | + | chr1_3:73045955-73045974 | Msa0139380:intron | 25.0% |
| !! | GTTTCTTCTATAGTTTTTCT+AGG | - | chr1_3:73046010-73046029 | None:intergenic | 25.0% |
| !! | TAATGAGTTGGAATGAAATA+TGG | + | chr1_3:73046051-73046070 | Msa0139380:intron | 25.0% |
| !! | TACTATTTCTTACTCAATCA+CGG | - | chr1_3:73046182-73046201 | None:intergenic | 25.0% |
| ! | AAATAGTATTCAACGTGAAA+TGG | + | chr1_3:73046194-73046213 | Msa0139380:intron | 25.0% |
| ! | GATATGTCAGGAATATAAAA+CGG | + | chr1_3:73046320-73046339 | Msa0139380:intron | 25.0% |
| ! | ATAGTTTATAGTTGAGTTTC+AGG | + | chr1_3:73046351-73046370 | Msa0139380:intron | 25.0% |
| ! | ACATCCGTTTAAAAGAAATT+AGG | + | chr1_3:73046397-73046416 | Msa0139380:intron | 25.0% |
| !!! | TTTTTTCCTATTTGGTTACA+TGG | + | chr1_3:73046588-73046607 | Msa0139380:intron | 25.0% |
| !! | TTTTTCCTATTTGGTTACAT+GGG | + | chr1_3:73046589-73046608 | Msa0139380:intron | 25.0% |
| !!! | ATATTTTGATTGACTTGTTC+TGG | + | chr1_3:73046740-73046759 | Msa0139380:intron | 25.0% |
| ! | ACTCTTGTATATAGCTTAAA+AGG | - | chr1_3:73046781-73046800 | None:intergenic | 25.0% |
| !!! | ATTGTTGTTTTTCGGTTTTA+AGG | - | chr1_3:73046877-73046896 | None:intergenic | 25.0% |
| ! | AACAACAATTTAAGAGTCAA+AGG | + | chr1_3:73046888-73046907 | Msa0139380:intron | 25.0% |
| ! | TAATAAATATGTTGAGGGAT+CGG | - | chr1_3:73046953-73046972 | None:intergenic | 25.0% |
| ! | AATAAATATAGCATCAATCC+AGG | - | chr1_3:73047062-73047081 | None:intergenic | 25.0% |
| ! | ATAAGAATTATTACCTCTTG+GGG | - | chr1_3:73047551-73047570 | None:intergenic | 25.0% |
| ! | CAATAAGAATTATTACCTCT+TGG | - | chr1_3:73047553-73047572 | None:intergenic | 25.0% |
| ! | AAAATAGAAAAATGAGTTCG+TGG | - | chr1_3:73047602-73047621 | None:intergenic | 25.0% |
| !!! | TTTTTAGGTTTAGGATTTGA+TGG | - | chr1_3:73047668-73047687 | None:intergenic | 25.0% |
| !!! | TTATCTGTCTTTTTAGGTTT+AGG | - | chr1_3:73047677-73047696 | None:intergenic | 25.0% |
| !! | GATTAATAGACATTTTTGTG+CGG | + | chr1_3:73047748-73047767 | Msa0139380:intron | 25.0% |
| ! | TCTCAACTATTTACTAAAAC+TGG | - | chr1_3:73047801-73047820 | None:intergenic | 25.0% |
| ! | CTGAGATACAAAATACATAT+TGG | - | chr1_3:73047827-73047846 | None:intergenic | 25.0% |
| !! | CAATATGTATTTTGTATCTC+AGG | + | chr1_3:73047825-73047844 | Msa0139380:intron | 25.0% |
| ! | TTTCAAAAAAATTGGAGAAG+GGG | + | chr1_3:73048191-73048210 | Msa0139380:intron | 25.0% |
| ! | TATAGTAAAAAATGCCTTGA+TGG | + | chr1_3:73048379-73048398 | Msa0139380:intron | 25.0% |
| ! | TTAACTTCATAATCAATCTG+GGG | - | chr1_3:73048704-73048723 | None:intergenic | 25.0% |
| ! | CATTAACTTCATAATCAATC+TGG | - | chr1_3:73048706-73048725 | None:intergenic | 25.0% |
| ! | CAGATTGATTATGAAGTTAA+TGG | + | chr1_3:73048704-73048723 | Msa0139380:CDS | 25.0% |
| ! | GATTGATTATGAAGTTAATG+GGG | + | chr1_3:73048706-73048725 | Msa0139380:CDS | 25.0% |
| ! | TATTTGACGTGATACTTATA+GGG | + | chr1_3:73048815-73048834 | Msa0139380:intron | 25.0% |
| ! | TTACGAGAAGCAATAAAAAA+TGG | + | chr1_3:73048839-73048858 | Msa0139380:CDS | 25.0% |
| ! | TGTCAAAAAACTTCTTAATG+AGG | + | chr1_3:73048874-73048893 | Msa0139380:CDS | 25.0% |
| !! | TTTCTTAATCATATAGTGGA+TGG | + | chr1_3:73049072-73049091 | Msa0139380:intron | 25.0% |
| !! | TGATATAGTTTTCATTCTCA+TGG | + | chr1_3:73049140-73049159 | Msa0139380:CDS | 25.0% |
| ! | CAATGATCTTAAAGATAGAT+CGG | + | chr1_3:73049259-73049278 | Msa0139380:intron | 25.0% |
| ! | GATAGATCGGAATAAATAAT+AGG | + | chr1_3:73049272-73049291 | Msa0139380:intron | 25.0% |
| !!! | TTTTATTTGTAGTCCTTATG+TGG | + | chr1_3:73049451-73049470 | Msa0139380:CDS | 25.0% |
| !! | TAATGTTTGAAGCTTTCTTT+GGG | - | chr1_3:73049480-73049499 | None:intergenic | 25.0% |
| ! | TTAAAATCATCCATTAGGAT+GGG | - | chr1_3:73049785-73049804 | None:intergenic | 25.0% |
| CTTCTCTTCATTTCCAATTT+CGG | + | chr1_3:73045249-73045268 | Msa0139380:intron | 30.0% | |
| ! | CTATACTGTATACTTTTGTG+TGG | + | chr1_3:73045513-73045532 | Msa0139380:intron | 30.0% |
| TAACTTCAGGGTAATATTAG+TGG | + | chr1_3:73045628-73045647 | Msa0139380:intron | 30.0% | |
| AGATGTAGAGATTAATGAGT+TGG | + | chr1_3:73046039-73046058 | Msa0139380:intron | 30.0% | |
| ! | TTGTTGTTGTACATTGAGTA+GGG | + | chr1_3:73046148-73046167 | Msa0139380:intron | 30.0% |
| AGTATGTTTGCAAAGACTTT+GGG | - | chr1_3:73046254-73046273 | None:intergenic | 30.0% | |
| AAGTATGTTTGCAAAGACTT+TGG | - | chr1_3:73046255-73046274 | None:intergenic | 30.0% | |
| AGCTATATACAAGAGTTGTA+AGG | + | chr1_3:73046785-73046804 | Msa0139380:intron | 30.0% | |
| TAAAGAACATCACAAAGACA+TGG | + | chr1_3:73046822-73046841 | Msa0139380:intron | 30.0% | |
| ACAAAGACATGGATGAATTA+TGG | + | chr1_3:73046833-73046852 | Msa0139380:intron | 30.0% | |
| CAAAGACATGGATGAATTAT+GGG | + | chr1_3:73046834-73046853 | Msa0139380:intron | 30.0% | |
| AAAGACATGGATGAATTATG+GGG | + | chr1_3:73046835-73046854 | Msa0139380:intron | 30.0% | |
| GAGAACAAAGAATACATCAA+TGG | + | chr1_3:73046916-73046935 | Msa0139380:intron | 30.0% | |
| AATAAATATGTTGAGGGATC+GGG | - | chr1_3:73046952-73046971 | None:intergenic | 30.0% | |
| ! | TTTTATTCCTCTTACATCAG+TGG | + | chr1_3:73047125-73047144 | Msa0139380:intron | 30.0% |
| !! | GCTTTAAGTTGAATGAACAA+TGG | - | chr1_3:73047180-73047199 | None:intergenic | 30.0% |
| TTCGTGGATTTCATCATAAA+AGG | - | chr1_3:73047586-73047605 | None:intergenic | 30.0% | |
| !! | GAAGCATTATCTGTCTTTTT+AGG | - | chr1_3:73047683-73047702 | None:intergenic | 30.0% |
| AGATTTGTATCCACATAAGT+TGG | - | chr1_3:73047865-73047884 | None:intergenic | 30.0% | |
| AACTTATGTGGATACAAATC+TGG | + | chr1_3:73047864-73047883 | Msa0139380:intron | 30.0% | |
| ! | TTAACATCTTTTACTCCACA+TGG | - | chr1_3:73047890-73047909 | None:intergenic | 30.0% |
| TGTATGAACTATACATGTTG+AGG | - | chr1_3:73047950-73047969 | None:intergenic | 30.0% | |
| !! | GAAGGTCAATTTCACTTTTA+GGG | - | chr1_3:73048022-73048041 | None:intergenic | 30.0% |
| ATCGCATGTTATAAATTCCT+TGG | + | chr1_3:73048065-73048084 | Msa0139380:intron | 30.0% | |
| ! | AAACGCTTTTCTCAAAGTAT+AGG | - | chr1_3:73048142-73048161 | None:intergenic | 30.0% |
| TTTCTCACTGAAAATAAGGA+GGG | + | chr1_3:73048159-73048178 | Msa0139380:intron | 30.0% | |
| TTCAAAAAAATTGGAGAAGG+GGG | + | chr1_3:73048192-73048211 | Msa0139380:intron | 30.0% | |
| TAGTATGCAGAAATTCCTTT+AGG | + | chr1_3:73048487-73048506 | Msa0139380:intron | 30.0% | |
| GTTAATGTTCAGTATCCTAA+AGG | - | chr1_3:73048505-73048524 | None:intergenic | 30.0% | |
| GTATTTGACGTGATACTTAT+AGG | + | chr1_3:73048814-73048833 | Msa0139380:intron | 30.0% | |
| ! | AGTTTTCATTCTCATGGATT+CGG | + | chr1_3:73049146-73049165 | Msa0139380:CDS | 30.0% |
| !! | TATCTTTAAGATCATTGCAG+AGG | - | chr1_3:73049256-73049275 | None:intergenic | 30.0% |
| AAAATGAAGATGCAAGAAAG+TGG | + | chr1_3:73049394-73049413 | Msa0139380:CDS | 30.0% | |
| ! | AATGTTTGAAGCTTTCTTTG+GGG | - | chr1_3:73049479-73049498 | None:intergenic | 30.0% |
| ! | GTAATGTTTGAAGCTTTCTT+TGG | - | chr1_3:73049481-73049500 | None:intergenic | 30.0% |
| AAGAAAGCTTCAAACATTAC+CGG | + | chr1_3:73049481-73049500 | Msa0139380:CDS | 30.0% | |
| CTTAAAATCATCCATTAGGA+TGG | - | chr1_3:73049786-73049805 | None:intergenic | 30.0% | |
| ! | TGATTTTTGTGTTGAACCTT+GGG | + | chr1_3:73049836-73049855 | Msa0139380:three_prime_UTR | 30.0% |
| TCATTGCTTCATTGAAGAAG+AGG | - | chr1_3:73045020-73045039 | None:intergenic | 35.0% | |
| CAAATCATTGCAGAGTACAA+AGG | - | chr1_3:73045049-73045068 | None:intergenic | 35.0% | |
| ATGTAGGCTTTACCACAATT+TGG | + | chr1_3:73045692-73045711 | Msa0139380:intron | 35.0% | |
| TTCGAGTAAATGCCAAATTG+TGG | - | chr1_3:73045707-73045726 | None:intergenic | 35.0% | |
| ! | GTTGTTGTTGTACATTGAGT+AGG | + | chr1_3:73046147-73046166 | Msa0139380:intron | 35.0% |
| ! | TCAACGTGAAATGGATTTCT+TGG | + | chr1_3:73046203-73046222 | Msa0139380:intron | 35.0% |
| ! | CTATTTTCTCCTTCTCTAAG+TGG | - | chr1_3:73046429-73046448 | None:intergenic | 35.0% |
| TAGAGAAGGAGAAAATAGCA+AGG | + | chr1_3:73046431-73046450 | Msa0139380:intron | 35.0% | |
| ACATAAATAGATCCAGAGAC+TGG | + | chr1_3:73046520-73046539 | Msa0139380:intron | 35.0% | |
| ACCTAGAAATGCATCAAACT+GGG | + | chr1_3:73046623-73046642 | Msa0139380:intron | 35.0% | |
| ! | GTAGACGAAAGTCCTTTTAA+AGG | - | chr1_3:73046991-73047010 | None:intergenic | 35.0% |
| CAGGTAACTCTTGAAAGATT+AGG | - | chr1_3:73047043-73047062 | None:intergenic | 35.0% | |
| CTAATCTTTCAAGAGTTACC+TGG | + | chr1_3:73047041-73047060 | Msa0139380:intron | 35.0% | |
| ATGTTGAGGAAAAGAGAATG+TGG | - | chr1_3:73047936-73047955 | None:intergenic | 35.0% | |
| !! | TTTTAGAAGCTCGTTACTCT+TGG | + | chr1_3:73047981-73048000 | Msa0139380:intron | 35.0% |
| !! | GGAAGGTCAATTTCACTTTT+AGG | - | chr1_3:73048023-73048042 | None:intergenic | 35.0% |
| TTCCTTGGTTGAGATAGTAA+TGG | + | chr1_3:73048080-73048099 | Msa0139380:intron | 35.0% | |
| TCCTTGGTTGAGATAGTAAT+GGG | + | chr1_3:73048081-73048100 | Msa0139380:intron | 35.0% | |
| AGCGTTTCTCACTGAAAATA+AGG | + | chr1_3:73048155-73048174 | Msa0139380:intron | 35.0% | |
| GTTTCTCACTGAAAATAAGG+AGG | + | chr1_3:73048158-73048177 | Msa0139380:intron | 35.0% | |
| TTCTCACTGAAAATAAGGAG+GGG | + | chr1_3:73048160-73048179 | Msa0139380:intron | 35.0% | |
| GTTTGACCTTGTAACTTCAA+GGG | - | chr1_3:73048288-73048307 | None:intergenic | 35.0% | |
| AGTTTGACCTTGTAACTTCA+AGG | - | chr1_3:73048289-73048308 | None:intergenic | 35.0% | |
| ! | GTAAAAAATGCCTTGATGGT+TGG | + | chr1_3:73048383-73048402 | Msa0139380:intron | 35.0% |
| TGATTATGAAGTTAATGGGG+AGG | + | chr1_3:73048709-73048728 | Msa0139380:CDS | 35.0% | |
| TTTGAGGGAAGTAGTATTCA+TGG | + | chr1_3:73048936-73048955 | Msa0139380:intron | 35.0% | |
| TTGAGGGAAGTAGTATTCAT+GGG | + | chr1_3:73048937-73048956 | Msa0139380:intron | 35.0% | |
| TGCTAATTACAGAGATAAGC+AGG | + | chr1_3:73048985-73049004 | Msa0139380:CDS | 35.0% | |
| GCTAATTACAGAGATAAGCA+GGG | + | chr1_3:73048986-73049005 | Msa0139380:CDS | 35.0% | |
| ! | GTTTTCATTCTCATGGATTC+GGG | + | chr1_3:73049147-73049166 | Msa0139380:CDS | 35.0% |
| ! | TTTTCATTCTCATGGATTCG+GGG | + | chr1_3:73049148-73049167 | Msa0139380:CDS | 35.0% |
| ! | CTTGTGCATTTTTATACTCC+AGG | - | chr1_3:73049179-73049198 | None:intergenic | 35.0% |
| CTGGAGTATAAAAATGCACA+AGG | + | chr1_3:73049177-73049196 | Msa0139380:CDS | 35.0% | |
| TAACTCACTGCTTCTTATTC+AGG | + | chr1_3:73049325-73049344 | Msa0139380:intron | 35.0% | |
| ! | ATTTTGTATTGCAGTGTAGC+CGG | - | chr1_3:73049373-73049392 | None:intergenic | 35.0% |
| TTCAAACATTACCGGCATTT+AGG | + | chr1_3:73049489-73049508 | Msa0139380:CDS | 35.0% | |
| GTCTATGATGTGTCTTACAT+AGG | - | chr1_3:73049622-73049641 | None:intergenic | 35.0% | |
| ! | TACCCTTTAAAAAATGCCCA+GGG | - | chr1_3:73049737-73049756 | None:intergenic | 35.0% |
| ! | TTACCCTTTAAAAAATGCCC+AGG | - | chr1_3:73049738-73049757 | None:intergenic | 35.0% |
| ! | ACTTTTTACACCCATCCTAA+TGG | + | chr1_3:73049772-73049791 | Msa0139380:three_prime_UTR | 35.0% |
| ! | GTGATTTTTGTGTTGAACCT+TGG | + | chr1_3:73049835-73049854 | Msa0139380:three_prime_UTR | 35.0% |
| ! | GATTTTTGTGTTGAACCTTG+GGG | + | chr1_3:73049837-73049856 | Msa0139380:three_prime_UTR | 35.0% |
| AAACCTGACTTACCTTTAGT+GGG | - | chr1_3:73049896-73049915 | None:intergenic | 35.0% | |
| AAAACCTGACTTACCTTTAG+TGG | - | chr1_3:73049897-73049916 | None:intergenic | 35.0% | |
| ! | CTAAAGGTAAGTCAGGTTTT+TGG | + | chr1_3:73049897-73049916 | Msa0139380:three_prime_UTR | 35.0% |
| AGCATCATTGTCGTTGTTGT+GGG | + | chr1_3:73045551-73045570 | Msa0139380:intron | 40.0% | |
| ATTGTGCAGCGAACATTCAT+CGG | + | chr1_3:73045579-73045598 | Msa0139380:CDS | 40.0% | |
| CGAACATTCATCGGATCAAA+TGG | + | chr1_3:73045588-73045607 | Msa0139380:CDS | 40.0% | |
| CTGATTGTTTCAACAACTCG+CGG | + | chr1_3:73045741-73045760 | Msa0139380:CDS | 40.0% | |
| GAGGATAGTTAGATCACTAG+CGG | + | chr1_3:73045974-73045993 | Msa0139380:intron | 40.0% | |
| TGTCAGGAATATAAAACGGC+TGG | + | chr1_3:73046324-73046343 | Msa0139380:intron | 40.0% | |
| GAGAAAATAGCAAGGACTTG+TGG | + | chr1_3:73046439-73046458 | Msa0139380:intron | 40.0% | |
| GACCTAGAAATGCATCAAAC+TGG | + | chr1_3:73046622-73046641 | Msa0139380:intron | 40.0% | |
| ACCCAGTTTGATGCATTTCT+AGG | - | chr1_3:73046627-73046646 | None:intergenic | 40.0% | |
| CATGTGAGCTATCAGCTATA+TGG | + | chr1_3:73046654-73046673 | Msa0139380:intron | 40.0% | |
| !!! | AAAGCTCGAGAGCATTTTCA+AGG | - | chr1_3:73046711-73046730 | None:intergenic | 40.0% |
| CTCTTGAAAGATTAGGTGCT+TGG | - | chr1_3:73047036-73047055 | None:intergenic | 40.0% | |
| CTCATCTCATTTCTCAACGT+TGG | + | chr1_3:73047199-73047218 | Msa0139380:intron | 40.0% | |
| AATTTCCTTTGGCACAGATC+TGG | + | chr1_3:73047329-73047348 | Msa0139380:intron | 40.0% | |
| ATTTCCTTTGGCACAGATCT+GGG | + | chr1_3:73047330-73047349 | Msa0139380:intron | 40.0% | |
| GTACGACAAACTTCTTCAGA+CGG | + | chr1_3:73047359-73047378 | Msa0139380:CDS | 40.0% | |
| GCAAGGTTATTATCTGCAGT+TGG | - | chr1_3:73047452-73047471 | None:intergenic | 40.0% | |
| GCAGATAATAACCTTGCATC+AGG | + | chr1_3:73047455-73047474 | Msa0139380:CDS | 40.0% | |
| ACTTCTTCTGTCACGAAGAA+TGG | - | chr1_3:73047625-73047644 | None:intergenic | 40.0% | |
| TTGATGGAGCTGTAACAACT+GGG | - | chr1_3:73047652-73047671 | None:intergenic | 40.0% | |
| TTTGATGGAGCTGTAACAAC+TGG | - | chr1_3:73047653-73047672 | None:intergenic | 40.0% | |
| TTCCACGAACAAGTTTAGGT+AGG | + | chr1_3:73047721-73047740 | Msa0139380:intron | 40.0% | |
| TCCACGAACAAGTTTAGGTA+GGG | + | chr1_3:73047722-73047741 | Msa0139380:intron | 40.0% | |
| CGATCATTCTCCAACTTATG+TGG | + | chr1_3:73047852-73047871 | Msa0139380:intron | 40.0% | |
| CCTTGGTTGAGATAGTAATG+GGG | + | chr1_3:73048082-73048101 | Msa0139380:intron | 40.0% | |
| GACACATCGTGGACAAAATA+AGG | + | chr1_3:73048323-73048342 | Msa0139380:intron | 40.0% | |
| TACCAGTAGTTACATGACCA+GGG | - | chr1_3:73048670-73048689 | None:intergenic | 40.0% | |
| ATGGGTTTCTATACACATGC+AGG | + | chr1_3:73048955-73048974 | Msa0139380:intron | 40.0% | |
| TGGGTTTCTATACACATGCA+GGG | + | chr1_3:73048956-73048975 | Msa0139380:intron | 40.0% | |
| GGGACTGTCTTTATTGCATT+TGG | + | chr1_3:73049006-73049025 | Msa0139380:CDS | 40.0% | |
| TTTCATTCTCATGGATTCGG+GGG | + | chr1_3:73049149-73049168 | Msa0139380:CDS | 40.0% | |
| CCATTGGCAGAATTTAAGGA+AGG | - | chr1_3:73049217-73049236 | None:intergenic | 40.0% | |
| CCTTCCTTAAATTCTGCCAA+TGG | + | chr1_3:73049214-73049233 | Msa0139380:CDS | 40.0% | |
| ACTGCCATTGGCAGAATTTA+AGG | - | chr1_3:73049221-73049240 | None:intergenic | 40.0% | |
| TAAGATCATTGCAGAGGATC+CGG | - | chr1_3:73049250-73049269 | None:intergenic | 40.0% | |
| AAAGTGGAGCAATGGATCAA+AGG | + | chr1_3:73049410-73049429 | Msa0139380:CDS | 40.0% | |
| ! | TTTCTTTGGGGAACCACATA+AGG | - | chr1_3:73049467-73049486 | None:intergenic | 40.0% |
| GGTACAGAGAAAGATAGTAC+AGG | - | chr1_3:73049713-73049732 | None:intergenic | 40.0% | |
| !!! | CACCCTGGGCATTTTTTAAA+GGG | + | chr1_3:73049732-73049751 | Msa0139380:three_prime_UTR | 40.0% |
| AAAAATGTGGTTGGGAGGAA+AGG | + | chr1_3:73049864-73049883 | Msa0139380:three_prime_UTR | 40.0% | |
| AACCTGACTTACCTTTAGTG+GGG | - | chr1_3:73049895-73049914 | None:intergenic | 40.0% | |
| GTTGCAGTTTCAACACCTTC+AGG | + | chr1_3:73045205-73045224 | Msa0139380:CDS | 45.0% | |
| GTTTCAACACCTTCAGGAGA+CGG | + | chr1_3:73045211-73045230 | Msa0139380:CDS | 45.0% | |
| TTTCAACACCTTCAGGAGAC+GGG | + | chr1_3:73045212-73045231 | Msa0139380:CDS | 45.0% | |
| CAGCATCATTGTCGTTGTTG+TGG | + | chr1_3:73045550-73045569 | Msa0139380:intron | 45.0% | |
| AACACGCTACAAAGTTAGCG+AGG | - | chr1_3:73045777-73045796 | None:intergenic | 45.0% | |
| AGATCACTAGCGGCAATTGA+AGG | + | chr1_3:73045984-73046003 | Msa0139380:intron | 45.0% | |
| TCTTACTCAATCACGGAGAC+AGG | - | chr1_3:73046175-73046194 | None:intergenic | 45.0% | |
| AGGAACTGACCACTTAGAGA+AGG | + | chr1_3:73046417-73046436 | Msa0139380:intron | 45.0% | |
| CGACTCCCATGTAACCAAAT+AGG | - | chr1_3:73046597-73046616 | None:intergenic | 45.0% | |
| TGCTTGGCTTCTACTTGGAA+TGG | - | chr1_3:73047020-73047039 | None:intergenic | 45.0% | |
| TTAGGTGCTTGGCTTCTACT+TGG | - | chr1_3:73047025-73047044 | None:intergenic | 45.0% | |
| TTGCAGTCCACTGATGTAAG+AGG | - | chr1_3:73047135-73047154 | None:intergenic | 45.0% | |
| ACTCTTTAACGCCTGATGCA+AGG | - | chr1_3:73047469-73047488 | None:intergenic | 45.0% | |
| ! | GGCGTTAAAGAGTGTAAGTG+TGG | + | chr1_3:73047476-73047495 | Msa0139380:CDS | 45.0% |
| GGAGCTTCACAAATGCAAAG+AGG | - | chr1_3:73047506-73047525 | None:intergenic | 45.0% | |
| ! | CCTAAACTTGTTCGTGGAAC+TGG | - | chr1_3:73047720-73047739 | None:intergenic | 45.0% |
| CCAGTTCCACGAACAAGTTT+AGG | + | chr1_3:73047717-73047736 | Msa0139380:CDS | 45.0% | |
| ! | TCCCTACCTAAACTTGTTCG+TGG | - | chr1_3:73047726-73047745 | None:intergenic | 45.0% |
| TGGATACAAATCTGGCCATG+TGG | + | chr1_3:73047872-73047891 | Msa0139380:intron | 45.0% | |
| CCCCATTACTATCTCAACCA+AGG | - | chr1_3:73048085-73048104 | None:intergenic | 45.0% | |
| ! | GGTTGAGATAGTAATGGGGA+AGG | + | chr1_3:73048086-73048105 | Msa0139380:intron | 45.0% |
| ACCTCTTACAAATTCCCCCA+AGG | + | chr1_3:73048247-73048266 | Msa0139380:intron | 45.0% | |
| CCTCTTACAAATTCCCCCAA+GGG | + | chr1_3:73048248-73048267 | Msa0139380:intron | 45.0% | |
| CTCTTACAAATTCCCCCAAG+GGG | + | chr1_3:73048249-73048268 | Msa0139380:intron | 45.0% | |
| GACCTTGTAACTTCAAGGGA+CGG | - | chr1_3:73048284-73048303 | None:intergenic | 45.0% | |
| ACACAATCAGCCAACCATCA+AGG | - | chr1_3:73048396-73048415 | None:intergenic | 45.0% | |
| TGCAGTTCTACGTTTAACCC+TGG | + | chr1_3:73048650-73048669 | Msa0139380:intron | 45.0% | |
| AACCCTGGTCATGTAACTAC+TGG | + | chr1_3:73048665-73048684 | Msa0139380:CDS | 45.0% | |
| GTACCAGTAGTTACATGACC+AGG | - | chr1_3:73048671-73048690 | None:intergenic | 45.0% | |
| ! | ATCAATCTGGGGTCTGTTTG+AGG | - | chr1_3:73048693-73048712 | None:intergenic | 45.0% |
| TTCTATACACATGCAGGGTG+TGG | + | chr1_3:73048961-73048980 | Msa0139380:intron | 45.0% | |
| TCTTCAGCATGTTTGTGCTC+AGG | + | chr1_3:73049039-73049058 | Msa0139380:intron | 45.0% | |
| AAGATCATTGCAGAGGATCC+GGG | - | chr1_3:73049249-73049268 | None:intergenic | 45.0% | |
| AACACCTTTAGACTGTGCTC+CGG | + | chr1_3:73049351-73049370 | Msa0139380:CDS | 45.0% | |
| GATGCAAGAAAGTGGAGCAA+TGG | + | chr1_3:73049402-73049421 | Msa0139380:CDS | 45.0% | |
| CCGTATCACAACCTAAATGC+CGG | - | chr1_3:73049503-73049522 | None:intergenic | 45.0% | |
| !! | CCGGCATTTAGGTTGTGATA+CGG | + | chr1_3:73049500-73049519 | Msa0139380:CDS | 45.0% |
| TATCTTTCTCTGTACCACCC+TGG | + | chr1_3:73049717-73049736 | Msa0139380:three_prime_UTR | 45.0% | |
| ATCTTTCTCTGTACCACCCT+GGG | + | chr1_3:73049718-73049737 | Msa0139380:three_prime_UTR | 45.0% | |
| ! | CCTTTAAAAAATGCCCAGGG+TGG | - | chr1_3:73049734-73049753 | None:intergenic | 45.0% |
| !!! | CCACCCTGGGCATTTTTTAA+AGG | + | chr1_3:73049731-73049750 | Msa0139380:three_prime_UTR | 45.0% |
| TTTGTGTTGAACCTTGGGGA+TGG | + | chr1_3:73049841-73049860 | Msa0139380:three_prime_UTR | 45.0% | |
| ACCTTGGGGATGGAAAAATG+TGG | + | chr1_3:73049851-73049870 | Msa0139380:three_prime_UTR | 45.0% | |
| ! | ACCACATTTTTCCATCCCCA+AGG | - | chr1_3:73049855-73049874 | None:intergenic | 45.0% |
| TGGGGATGGAAAAATGTGGT+TGG | + | chr1_3:73049855-73049874 | Msa0139380:three_prime_UTR | 45.0% | |
| GGGGATGGAAAAATGTGGTT+GGG | + | chr1_3:73049856-73049875 | Msa0139380:three_prime_UTR | 45.0% | |
| GATGGAAAAATGTGGTTGGG+AGG | + | chr1_3:73049859-73049878 | Msa0139380:three_prime_UTR | 45.0% | |
| GAAAGGAAAGACCCCACTAA+AGG | + | chr1_3:73049881-73049900 | Msa0139380:three_prime_UTR | 45.0% | |
| !!! | AAATAAAAAATTGTTATTTT+GGG | - | chr1_3:73044953-73044972 | None:intergenic | 5.0% |
| !!! | TAAATAAAAAATTGTTATTT+TGG | - | chr1_3:73044954-73044973 | None:intergenic | 5.0% |
| !! | ATATTTATTAATAATTTATC+TGG | + | chr1_3:73047073-73047092 | Msa0139380:intron | 5.0% |
| !!! | ATTTTTTTTTTCAAAAAAAT+TGG | + | chr1_3:73048183-73048202 | Msa0139380:intron | 5.0% |
| !! | CATCGTGCTGCTTCTTGGAA+AGG | - | chr1_3:73045174-73045193 | None:intergenic | 50.0% |
| !! | CAACACATCGTGCTGCTTCT+TGG | - | chr1_3:73045179-73045198 | None:intergenic | 50.0% |
| AAAGCATACCCGTCTCCTGA+AGG | - | chr1_3:73045223-73045242 | None:intergenic | 50.0% | |
| ! | ACATAGTGGGGTCAGCTACA+TGG | - | chr1_3:73046108-73046127 | None:intergenic | 50.0% |
| ATGTAGCTGACCCCACTATG+TGG | + | chr1_3:73046107-73046126 | Msa0139380:intron | 50.0% | |
| TGTAGCTGACCCCACTATGT+GGG | + | chr1_3:73046108-73046127 | Msa0139380:intron | 50.0% | |
| ! | AAGCCTTGTCCCACATAGTG+GGG | - | chr1_3:73046120-73046139 | None:intergenic | 50.0% |
| ! | CAAGCCTTGTCCCACATAGT+GGG | - | chr1_3:73046121-73046140 | None:intergenic | 50.0% |
| AAAGACACGCAACCAGTCTC+TGG | - | chr1_3:73046535-73046554 | None:intergenic | 50.0% | |
| TGGAGCTGTAACAACTGGGA+TGG | - | chr1_3:73047648-73047667 | None:intergenic | 50.0% | |
| CCCTTGGGGGAATTTGTAAG+AGG | - | chr1_3:73048251-73048270 | None:intergenic | 50.0% | |
| ACGGAGTTTGAATCCCCTTG+GGG | - | chr1_3:73048265-73048284 | None:intergenic | 50.0% | |
| GACGGAGTTTGAATCCCCTT+GGG | - | chr1_3:73048266-73048285 | None:intergenic | 50.0% | |
| CTCCGTCCCTTGAAGTTACA+AGG | + | chr1_3:73048279-73048298 | Msa0139380:intron | 50.0% | |
| ACCTTTGAGCTGACACATCG+TGG | + | chr1_3:73048312-73048331 | Msa0139380:intron | 50.0% | |
| TCCACGATGTGTCAGCTCAA+AGG | - | chr1_3:73048316-73048335 | None:intergenic | 50.0% | |
| GGCATGTTGCGAAGAGAACT+TGG | + | chr1_3:73048772-73048791 | Msa0139380:intron | 50.0% | |
| TAGGTTGTGATACGGCTCTC+TGG | + | chr1_3:73049508-73049527 | Msa0139380:CDS | 50.0% | |
| AGGTTGTGATACGGCTCTCT+GGG | + | chr1_3:73049509-73049528 | Msa0139380:CDS | 50.0% | |
| GACCCCACTAAAGGTAAGTC+AGG | + | chr1_3:73049890-73049909 | Msa0139380:three_prime_UTR | 50.0% | |
| GCTGCTTCTTGGAAAGGAGG+AGG | - | chr1_3:73045168-73045187 | None:intergenic | 55.0% | |
| !! | CGTGCTGCTTCTTGGAAAGG+AGG | - | chr1_3:73045171-73045190 | None:intergenic | 55.0% |
| TGACCCCACTATGTGGGACA+AGG | + | chr1_3:73046114-73046133 | Msa0139380:intron | 55.0% | |
| ! | CCAAGCCTTGTCCCACATAG+TGG | - | chr1_3:73046122-73046141 | None:intergenic | 55.0% |
| CCACTATGTGGGACAAGGCT+TGG | + | chr1_3:73046119-73046138 | Msa0139380:intron | 55.0% | |
| CCTTCCCAGATCTGTGCCAA+AGG | - | chr1_3:73047337-73047356 | None:intergenic | 55.0% | |
| CCTTTGGCACAGATCTGGGA+AGG | + | chr1_3:73047334-73047353 | Msa0139380:intron | 55.0% | |
| GGAACTGCAGAAGAGGAAGG+GGG | - | chr1_3:73047530-73047549 | None:intergenic | 55.0% | |
| GGGAACTGCAGAAGAGGAAG+GGG | - | chr1_3:73047531-73047550 | None:intergenic | 55.0% | |
| GGGGAACTGCAGAAGAGGAA+GGG | - | chr1_3:73047532-73047551 | None:intergenic | 55.0% | |
| TGGGGAACTGCAGAAGAGGA+AGG | - | chr1_3:73047533-73047552 | None:intergenic | 55.0% | |
| CTCTTGGGGAACTGCAGAAG+AGG | - | chr1_3:73047537-73047556 | None:intergenic | 55.0% | |
| CTCTTCTGCAGTTCCCCAAG+AGG | + | chr1_3:73047535-73047554 | Msa0139380:CDS | 55.0% | |
| AGGCTTCAGCTGACGAGACA+TGG | - | chr1_3:73048122-73048141 | None:intergenic | 55.0% | |
| CGGAGTTTGAATCCCCTTGG+GGG | - | chr1_3:73048264-73048283 | None:intergenic | 55.0% | |
| GGACGGAGTTTGAATCCCCT+TGG | - | chr1_3:73048267-73048286 | None:intergenic | 55.0% | |
| ! | TGCCAATGGCAGTTTTCGCC+CGG | + | chr1_3:73049228-73049247 | Msa0139380:intron | 55.0% |
| ATCCGGGCGAAAACTGCCAT+TGG | - | chr1_3:73049233-73049252 | None:intergenic | 55.0% | |
| GTAGCCGGAGCACAGTCTAA+AGG | - | chr1_3:73049358-73049377 | None:intergenic | 55.0% | |
| ACTGCAGAAGAGGAAGGGGG+AGG | - | chr1_3:73047527-73047546 | None:intergenic | 60.0% | |
| CATGGATTCGGGGGCAAACC+TGG | + | chr1_3:73049158-73049177 | Msa0139380:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 73044944 | 73049952 | 73044944 | ID=Msa0139380;Name=Msa0139380 |
| chr1_3 | mRNA | 73044944 | 73049952 | 73044944 | ID=Msa0139380-mRNA-1;Parent=Msa0139380;Name=Msa0139380-mRNA-1;_AED=0.15;_eAED=0.15;_QI=200|0.88|0.9|1|0.88|0.9|10|407|342 |
| chr1_3 | exon | 73044944 | 73045233 | 73044944 | ID=Msa0139380-mRNA-1:exon:25457;Parent=Msa0139380-mRNA-1 |
| chr1_3 | exon | 73045553 | 73045609 | 73045553 | ID=Msa0139380-mRNA-1:exon:25458;Parent=Msa0139380-mRNA-1 |
| chr1_3 | exon | 73045698 | 73045762 | 73045698 | ID=Msa0139380-mRNA-1:exon:25459;Parent=Msa0139380-mRNA-1 |
| chr1_3 | exon | 73047346 | 73047556 | 73047346 | ID=Msa0139380-mRNA-1:exon:25460;Parent=Msa0139380-mRNA-1 |
| chr1_3 | exon | 73047638 | 73047738 | 73047638 | ID=Msa0139380-mRNA-1:exon:25461;Parent=Msa0139380-mRNA-1 |
| chr1_3 | exon | 73048655 | 73048730 | 73048655 | ID=Msa0139380-mRNA-1:exon:25462;Parent=Msa0139380-mRNA-1 |
| chr1_3 | exon | 73048836 | 73048895 | 73048836 | ID=Msa0139380-mRNA-1:exon:25463;Parent=Msa0139380-mRNA-1 |
| chr1_3 | exon | 73048977 | 73049027 | 73048977 | ID=Msa0139380-mRNA-1:exon:25464;Parent=Msa0139380-mRNA-1 |
| chr1_3 | exon | 73049120 | 73049238 | 73049120 | ID=Msa0139380-mRNA-1:exon:25465;Parent=Msa0139380-mRNA-1 |
| chr1_3 | exon | 73049347 | 73049952 | 73049347 | ID=Msa0139380-mRNA-1:exon:25466;Parent=Msa0139380-mRNA-1 |
| chr1_3 | five_prime_UTR | 73044944 | 73045143 | 73044944 | ID=Msa0139380-mRNA-1:five_prime_utr;Parent=Msa0139380-mRNA-1 |
| chr1_3 | CDS | 73045144 | 73045233 | 73045144 | ID=Msa0139380-mRNA-1:cds;Parent=Msa0139380-mRNA-1 |
| chr1_3 | CDS | 73045553 | 73045609 | 73045553 | ID=Msa0139380-mRNA-1:cds;Parent=Msa0139380-mRNA-1 |
| chr1_3 | CDS | 73045698 | 73045762 | 73045698 | ID=Msa0139380-mRNA-1:cds;Parent=Msa0139380-mRNA-1 |
| chr1_3 | CDS | 73047346 | 73047556 | 73047346 | ID=Msa0139380-mRNA-1:cds;Parent=Msa0139380-mRNA-1 |
| chr1_3 | CDS | 73047638 | 73047738 | 73047638 | ID=Msa0139380-mRNA-1:cds;Parent=Msa0139380-mRNA-1 |
| chr1_3 | CDS | 73048655 | 73048730 | 73048655 | ID=Msa0139380-mRNA-1:cds;Parent=Msa0139380-mRNA-1 |
| chr1_3 | CDS | 73048836 | 73048895 | 73048836 | ID=Msa0139380-mRNA-1:cds;Parent=Msa0139380-mRNA-1 |
| chr1_3 | CDS | 73048977 | 73049027 | 73048977 | ID=Msa0139380-mRNA-1:cds;Parent=Msa0139380-mRNA-1 |
| chr1_3 | CDS | 73049120 | 73049238 | 73049120 | ID=Msa0139380-mRNA-1:cds;Parent=Msa0139380-mRNA-1 |
| chr1_3 | CDS | 73049347 | 73049545 | 73049347 | ID=Msa0139380-mRNA-1:cds;Parent=Msa0139380-mRNA-1 |
| chr1_3 | three_prime_UTR | 73049546 | 73049952 | 73049546 | ID=Msa0139380-mRNA-1:three_prime_utr;Parent=Msa0139380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
