AlfalfaGEDB | Msa0160940

M. sativa cultivar zhongmu-4 / Msa0160940

KEGG: K07904
GO: GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0019899 GO:0019900 GO:0022414 GO:0022603 GO:0022604 GO:0030133 GO:0030154 GO:0030427 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0040008 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051286 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0070382 GO:0071840 GO:0080092 GO:0090404 GO:0090406 GO:0097708 GO:0099503 GO:0120025 GO:0120038 GO:2000241
PFAM: PF00071.25

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0160940	sp\|Q9LH50\|RAA4D_ARATH	94.375	160	7	1	1	158	1	160	3.21e-110	315

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0160940	I3SB39	98.750	160	0	1	1	158	1	160	2.25e-111	325

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0078640	Msa0160940	0.806535	7.848843e-50	-8.615850e-47
Msa0117520	Msa0160940	0.827079	1.907385e-54	-8.615850e-47
Msa0138020	Msa0160940	0.805228	1.476891e-49	-8.615850e-47
Msa0152560	Msa0160940	0.803244	3.824786e-49	-8.615850e-47
Msa0160940	Msa0160960	0.846828	1.699113e-59	-8.615850e-47
Msa0160940	Msa0217700	0.815206	1.041117e-51	-8.615850e-47
Msa0160940	Msa0218370	0.805063	1.599787e-49	-8.615850e-47
Msa0160940	Msa0227340	0.801671	8.065644e-49	-8.615850e-47
Msa0160940	Msa0232020	0.813623	2.331179e-51	-8.615850e-47
Msa0160940	Msa0234090	0.802367	5.801396e-49	-8.615850e-47
Msa0160940	Msa0240270	0.803263	3.788762e-49	-8.615850e-47
Msa0160940	Msa0241140	0.820702	5.965509e-53	-8.615850e-47
Msa0160940	Msa0264830	0.812782	3.565603e-51	-8.615850e-47
Msa0160940	Msa0267790	0.806787	6.940930e-50	-8.615850e-47
Msa0160940	Msa0278580	0.824344	8.494908e-54	-8.615850e-47
Msa0160940	Msa0287870	0.802061	6.707228e-49	-8.615850e-47
Msa0160940	Msa0302870	0.808796	2.597569e-50	-8.615850e-47
Msa0160940	Msa0317960	0.809317	2.009089e-50	-8.615850e-47
Msa0160940	Msa0317970	0.808875	2.497482e-50	-8.615850e-47
Msa0160940	Msa0340340	0.812073	5.091817e-51	-8.615850e-47
Msa0160940	Msa0371950	0.800303	1.535648e-48	-8.615850e-47
Msa0160940	Msa0394470	0.804526	2.070923e-49	-8.615850e-47
Msa0160940	Msa0414140	0.809657	1.697968e-50	-8.615850e-47
Msa0160940	Msa0432160	0.820051	8.414148e-53	-8.615850e-47
Msa0160940	Msa0476680	0.827742	1.322214e-54	-8.615850e-47
Msa0160940	Msa0485490	0.806068	9.842886e-50	-8.615850e-47
Msa0160940	Msa0521010	0.826242	3.020693e-54	-8.615850e-47
Msa0160940	Msa0600590	0.814844	1.252714e-51	-8.615850e-47
Msa0160940	Msa0613340	0.801630	8.225784e-49	-8.615850e-47
Msa0160940	Msa0641130	0.803540	3.320882e-49	-8.615850e-47
Msa0160940	Msa0653670	0.821510	3.886922e-53	-8.615850e-47
Msa0160940	Msa0797770	0.812763	3.599140e-51	-8.615850e-47
Msa0160940	Msa0817460	0.804492	2.104545e-49	-8.615850e-47
Msa0160940	Msa0822500	0.815799	7.681241e-52	-8.615850e-47
Msa0160940	Msa0828240	0.807431	5.071025e-50	-8.615850e-47
Msa0160940	Msa0830230	0.815293	9.955795e-52	-8.615850e-47
Msa0160940	Msa0835230	0.818119	2.314351e-52	-8.615850e-47
Msa0160940	Msa0894710	0.827186	1.797526e-54	-8.615850e-47
Msa0160940	Msa0899970	0.804823	1.795605e-49	-8.615850e-47
Msa0160940	Msa0921420	0.814845	1.251986e-51	-8.615850e-47
Msa0160940	Msa0960390	0.804535	2.061433e-49	-8.615850e-47
Msa0160940	Msa0965080	0.811136	8.141315e-51	-8.615850e-47
Msa0160940	Msa0965290	0.812731	3.658877e-51	-8.615850e-47
Msa0160940	Msa0994910	0.805773	1.135458e-49	-8.615850e-47
Msa0160940	Msa0999680	0.813263	2.796593e-51	-8.615850e-47
Msa0160940	Msa1011090	0.814420	1.554423e-51	-8.615850e-47
Msa0160940	Msa1089450	0.810795	9.652008e-51	-8.615850e-47
Msa0160940	Msa1089460	0.820596	6.310496e-53	-8.615850e-47
Msa0160940	Msa1122150	0.800174	1.631109e-48	-8.615850e-47
Msa0160940	Msa1137780	0.813589	2.371611e-51	-8.615850e-47
Msa0160940	Msa1175200	0.817008	4.120941e-52	-8.615850e-47
Msa0160940	Msa1236440	0.806674	7.333117e-50	-8.615850e-47
Msa0160940	Msa1246360	0.817297	3.547488e-52	-8.615850e-47
Msa0160940	Msa1277670	0.803544	3.313603e-49	-8.615850e-47
Msa0160940	Msa1325410	-0.805434	1.337454e-49	-8.615850e-47
Msa0160940	Msa1330180	0.807423	5.091147e-50	-8.615850e-47
Msa0160940	Msa1346840	0.811624	6.378953e-51	-8.615850e-47
Msa0160940	Msa1368360	0.800294	1.541682e-48	-8.615850e-47
Msa0160940	Msa1458340	0.801336	9.446908e-49	-8.615850e-47
Msa0160940	Msa1458680	0.801612	8.293224e-49	-8.615850e-47
Msa0160940	Msa1462360	0.828996	6.588428e-55	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0160940	MtrunA17_Chr1g0174281	98.750	160	0	1	1	158	1	160	4.33e-115	325
Msa0160940	MtrunA17_Chr7g0231131	90.625	160	13	1	1	158	1	160	1.19e-105	301
Msa0160940	MtrunA17_Chr8g0381841	80.128	156	29	1	5	158	7	162	8.22e-92	266
Msa0160940	MtrunA17_Chr3g0123821	80.769	156	28	1	5	158	6	161	1.50e-91	265
Msa0160940	MtrunA17_Chr8g0346421	74.026	154	38	1	7	158	18	171	7.90e-82	241
Msa0160940	MtrunA17_Chr7g0275991	72.848	151	39	1	10	158	15	165	5.65e-77	228
Msa0160940	MtrunA17_Chr2g0319951	70.270	148	42	1	13	158	11	158	3.93e-76	226
Msa0160940	MtrunA17_Chr2g0276941	68.212	151	46	1	10	158	10	160	1.57e-73	219
Msa0160940	MtrunA17_Chr3g0112681	67.568	148	46	1	13	158	10	157	1.24e-72	217
Msa0160940	MtrunA17_Chr8g0351861	62.112	161	58	2	1	158	1	161	1.35e-72	217
Msa0160940	MtrunA17_Chr2g0315551	66.216	148	48	1	13	158	11	158	2.82e-72	216
Msa0160940	MtrunA17_Chr4g0040781	67.568	148	46	1	13	158	11	158	3.36e-72	216
Msa0160940	MtrunA17_Chr4g0032201	65.789	152	50	1	9	158	6	157	4.33e-72	215
Msa0160940	MtrunA17_Chr2g0283131	66.892	148	47	1	13	158	11	158	5.21e-72	215
Msa0160940	MtrunA17_Chr4g0046261	66.216	148	48	1	13	158	11	158	1.11e-71	214
Msa0160940	MtrunA17_Chr7g0214241	65.306	147	49	1	14	158	14	160	9.62e-71	212
Msa0160940	MtrunA17_Chr2g0325091	63.226	155	55	1	6	158	2	156	6.54e-70	210
Msa0160940	MtrunA17_Chr1g0189361	64.189	148	51	1	13	158	12	159	2.94e-67	203
Msa0160940	MtrunA17_Chr7g0234201	61.905	147	54	1	14	158	12	158	1.70e-64	196
Msa0160940	MtrunA17_Chr8g0392931	56.209	153	65	1	8	158	7	159	1.89e-59	183
Msa0160940	MtrunA17_Chr2g0290891	54.795	146	64	1	14	157	5	150	6.48e-57	177
Msa0160940	MtrunA17_Chr6g0482721	53.595	153	69	1	8	158	5	157	8.32e-57	177
Msa0160940	MtrunA17_Chr6g0458081	53.061	147	67	1	13	157	4	150	3.18e-55	172
Msa0160940	MtrunA17_Chr8g0349711	53.425	146	66	1	14	157	5	150	1.85e-53	168
Msa0160940	MtrunA17_Chr8g0349681	53.425	146	66	1	14	157	383	528	1.45e-49	167
Msa0160940	MtrunA17_Chr8g0349681	52.740	146	67	1	14	157	12	157	6.09e-48	163
Msa0160940	MtrunA17_Chr8g0349681	50.993	151	72	1	9	157	169	319	5.16e-47	160
Msa0160940	MtrunA17_Chr7g0250531	49.007	151	75	1	9	157	2	152	3.91e-47	152
Msa0160940	MtrunA17_Chr8g0335471	49.007	151	75	1	9	157	2	152	5.08e-46	149
Msa0160940	MtrunA17_Chr4g0055651	49.007	151	75	1	9	157	2	152	5.69e-46	149
Msa0160940	MtrunA17_Chr2g0276931	47.619	147	75	1	13	157	7	153	1.16e-44	145
Msa0160940	MtrunA17_Chr1g0182321	47.973	148	74	2	13	157	13	160	7.72e-44	144
Msa0160940	MtrunA17_Chr1g0182301	47.973	148	74	2	13	157	13	160	8.06e-44	144
Msa0160940	MtrunA17_Chr7g0263071	47.973	148	74	2	13	157	13	160	1.17e-43	143
Msa0160940	MtrunA17_Chr1g0212521	47.973	148	74	2	13	157	13	160	1.62e-43	143
Msa0160940	MtrunA17_Chr4g0030911	47.973	148	74	2	13	157	13	160	1.65e-43	143
Msa0160940	MtrunA17_Chr1g0199331	46.528	144	74	2	17	157	33	176	2.68e-42	139
Msa0160940	MtrunA17_Chr3g0109721	45.455	143	76	1	17	157	12	154	4.73e-40	134
Msa0160940	MtrunA17_Chr2g0327911	43.624	149	80	3	13	157	13	161	2.71e-39	132
Msa0160940	MtrunA17_Chr5g0433561	44.056	143	78	1	17	157	12	154	5.80e-39	130
Msa0160940	MtrunA17_Chr5g0400131	40.972	144	83	1	16	157	10	153	1.53e-38	130
Msa0160940	MtrunA17_Chr4g0055081	38.889	144	86	1	16	157	10	153	1.23e-37	127
Msa0160940	MtrunA17_Chr3g0123971	39.583	144	85	1	16	157	10	153	2.14e-37	127
Msa0160940	MtrunA17_Chr8g0384311	42.763	152	82	4	10	157	8	158	4.52e-37	126
Msa0160940	MtrunA17_Chr8g0382221	39.583	144	85	1	16	157	10	153	1.92e-36	124
Msa0160940	MtrunA17_Chr8g0390561	41.958	143	81	1	17	157	11	153	2.20e-36	124
Msa0160940	MtrunA17_Chr1g0159481	41.722	151	83	4	11	157	13	162	1.34e-35	122
Msa0160940	MtrunA17_Chr7g0265001	44.295	149	79	3	13	157	14	162	2.41e-35	122
Msa0160940	MtrunA17_Chr1g0197331	44.516	155	79	5	9	157	9	162	4.24e-35	121
Msa0160940	MtrunA17_Chr3g0130271	41.830	153	83	5	10	157	7	158	6.33e-34	118
Msa0160940	MtrunA17_Chr1g0180291	43.624	149	79	4	13	157	12	159	8.86e-34	118
Msa0160940	MtrunA17_Chr8g0383261	41.447	152	80	4	15	157	12	163	1.83e-31	112
Msa0160940	MtrunA17_Chr6g0466301	41.447	152	80	4	15	157	8	159	7.92e-31	110
Msa0160940	MtrunA17_Chr6g0465491	41.447	152	80	4	15	157	8	159	7.92e-31	110
Msa0160940	MtrunA17_Chr1g0201121	41.447	152	80	4	15	157	8	159	9.64e-31	110
Msa0160940	MtrunA17_Chr4g0034871	39.474	152	83	4	15	157	8	159	6.96e-29	105
Msa0160940	MtrunA17_Chr2g0331691	38.158	152	85	4	15	157	10	161	1.14e-27	102
Msa0160940	MtrunA17_Chr4g0004661	38.158	152	85	4	15	157	64	215	9.89e-27	101
Msa0160940	MtrunA17_Chr6g0466161	38.519	135	74	4	32	157	7	141	1.71e-22	89.0
Msa0160940	MtrunA17_Chr6g0465471	38.519	135	74	4	32	157	7	141	1.77e-22	89.0
Msa0160940	MtrunA17_Chr4g0046211	37.607	117	68	4	17	130	8	122	2.82e-19	79.0
Msa0160940	MtrunA17_Chr2g0325101	38.136	118	68	4	16	130	7	122	6.11e-19	79.3
Msa0160940	MtrunA17_Chr4g0037021	37.288	118	69	4	16	130	7	122	1.42e-18	78.6
Msa0160940	MtrunA17_Chr3g0138121	31.126	151	98	4	10	157	7	154	6.27e-18	77.4
Msa0160940	MtrunA17_Chr3g0138101	31.126	151	98	4	10	157	7	154	6.47e-18	77.0
Msa0160940	MtrunA17_Chr3g0138111	31.126	151	98	4	10	157	7	154	6.97e-18	77.0
Msa0160940	MtrunA17_Chr8g0371501	35.036	137	76	5	17	142	8	142	5.65e-17	74.3
Msa0160940	MtrunA17_Chr6g0486041	36.752	117	69	4	17	130	8	122	1.55e-16	73.2
Msa0160940	MtrunA17_Chr5g0405791	34.058	138	78	5	16	142	7	142	3.48e-16	72.0
Msa0160940	MtrunA17_Chr6g0466431	37.374	99	51	2	15	111	8	97	3.80e-16	69.7
Msa0160940	MtrunA17_Chr6g0465611	37.374	99	51	2	15	111	8	97	3.80e-16	69.7
Msa0160940	MtrunA17_Chr3g0117931	35.043	117	71	4	17	130	10	124	1.72e-15	70.5
Msa0160940	MtrunA17_Chr2g0331841	41.379	58	34	0	82	139	2	59	4.80e-12	58.9
Msa0160940	MtrunA17_Chr5g0443631	30.172	116	78	2	16	129	105	219	1.63e-11	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0160940	AT3G12160.1	94.375	160	7	1	1	158	1	160	3.26e-111	315
Msa0160940	AT5G47960.1	85.625	160	21	1	1	158	1	160	3.46e-100	287
Msa0160940	AT5G65270.1	77.564	156	33	1	5	158	7	162	4.53e-89	259
Msa0160940	AT4G39990.1	78.000	150	31	1	11	158	13	162	1.46e-85	250
Msa0160940	AT1G01200.1	73.026	152	38	2	10	158	23	174	7.97e-76	226
Msa0160940	AT1G06400.1	67.105	152	48	1	9	158	7	158	1.30e-74	222
Msa0160940	AT1G09630.1	67.105	152	48	1	9	158	6	157	1.75e-73	219
Msa0160940	AT5G60860.1	66.447	152	49	1	9	158	7	158	9.52e-73	218
Msa0160940	AT4G18430.1	65.541	148	49	1	13	158	11	158	1.12e-72	217
Msa0160940	AT1G16920.1	67.568	148	46	1	13	158	11	158	1.32e-72	217
Msa0160940	AT5G59150.1	67.550	151	47	1	10	158	7	157	4.54e-72	216
Msa0160940	AT3G46830.1	65.132	152	51	1	9	158	6	157	1.46e-71	214
Msa0160940	AT3G46830.2	65.132	152	51	1	9	158	6	157	1.46e-71	214
Msa0160940	AT3G15060.1	66.892	148	47	1	13	158	11	158	1.84e-71	214
Msa0160940	AT1G07410.1	64.474	152	52	1	9	158	6	157	5.88e-71	213
Msa0160940	AT5G45750.1	65.541	148	49	1	13	158	11	158	8.61e-71	213
Msa0160940	AT4G18800.1	66.216	148	48	1	13	158	11	158	1.13e-70	212
Msa0160940	AT1G28550.1	67.568	148	46	1	13	158	11	158	1.22e-70	212
Msa0160940	AT2G33870.1	65.541	148	49	1	13	158	11	158	4.19e-70	211
Msa0160940	AT2G43130.1	64.189	148	51	1	13	158	10	157	4.79e-70	211
Msa0160940	AT2G31680.1	62.838	148	53	1	13	158	10	157	7.42e-69	207
Msa0160940	AT1G05810.1	62.162	148	54	1	13	158	10	157	1.06e-67	205
Msa0160940	AT1G05810.2	59.236	157	62	1	4	158	47	203	1.71e-67	206
Msa0160940	AT5G47520.1	59.873	157	61	1	4	158	3	159	8.04e-66	200
Msa0160940	AT3G07410.1	62.838	148	53	1	13	158	10	157	1.89e-65	199
Msa0160940	AT1G18200.1	55.556	153	66	1	8	158	6	158	1.18e-61	190
Msa0160940	AT1G73640.1	54.248	153	68	1	8	158	6	158	2.30e-58	181
Msa0160940	AT4G17170.1	54.795	146	64	1	14	157	5	150	6.59e-57	177
Msa0160940	AT4G35860.1	52.381	147	68	1	13	157	4	150	4.02e-55	172
Msa0160940	AT4G17160.1	54.795	146	64	1	14	157	5	150	4.75e-55	172
Msa0160940	AT1G02130.1	49.669	151	74	1	9	157	2	152	2.93e-47	152
Msa0160940	AT4G17530.1	49.007	151	75	1	9	157	2	152	1.26e-46	150
Msa0160940	AT5G59150.2	68.627	102	30	1	59	158	5	106	6.80e-46	147
Msa0160940	AT3G54840.1	49.306	144	70	2	17	157	35	178	3.84e-45	147
Msa0160940	AT3G54840.2	49.306	144	70	2	17	157	35	178	4.19e-45	146
Msa0160940	AT3G54840.3	48.951	143	70	2	18	157	2	144	7.37e-45	145
Msa0160940	AT5G47200.1	48.344	151	76	1	9	157	2	152	1.48e-44	145
Msa0160940	AT3G46060.2	47.973	148	74	2	13	157	13	160	2.95e-43	142
Msa0160940	AT3G46060.3	47.973	148	74	2	13	157	13	160	2.95e-43	142
Msa0160940	AT3G46060.1	47.973	148	74	2	13	157	13	160	2.95e-43	142
Msa0160940	AT3G11730.1	46.541	159	76	2	1	157	1	152	4.73e-43	142
Msa0160940	AT5G59840.1	47.297	148	75	2	13	157	13	160	1.09e-42	141
Msa0160940	AT4G19640.1	46.853	143	74	1	17	157	12	154	2.84e-42	139
Msa0160940	AT3G53610.2	46.622	148	76	2	13	157	13	160	7.33e-42	139
Msa0160940	AT3G53610.3	46.622	148	76	2	13	157	13	160	7.33e-42	139
Msa0160940	AT3G53610.1	46.622	148	76	2	13	157	13	160	7.33e-42	139
Msa0160940	AT5G45130.1	45.455	143	76	1	17	157	12	154	3.03e-41	137
Msa0160940	AT5G03520.1	47.973	148	74	2	13	157	13	160	4.73e-41	137
Msa0160940	AT3G09900.1	47.297	148	75	2	13	157	13	160	1.94e-40	135
Msa0160940	AT5G45130.2	45.390	141	75	1	19	157	22	162	3.18e-40	134
Msa0160940	AT4G35860.2	55.340	103	44	1	57	157	2	104	3.55e-40	133
Msa0160940	AT1G43890.3	45.033	151	78	4	11	157	9	158	6.79e-38	129
Msa0160940	AT1G43890.1	45.033	151	78	4	11	157	9	158	6.79e-38	129
Msa0160940	AT1G43890.2	45.033	151	78	4	11	157	9	158	6.79e-38	129
Msa0160940	AT2G44610.1	40.278	144	84	1	16	157	10	153	7.98e-38	128
Msa0160940	AT5G10260.1	39.583	144	85	1	16	157	10	153	1.38e-36	125
Msa0160940	AT2G22290.1	38.889	144	86	1	16	157	10	153	2.23e-35	122
Msa0160940	AT4G39890.1	37.931	145	87	2	16	157	10	154	2.54e-35	122
Msa0160940	AT5G64990.1	38.889	144	86	1	16	157	8	151	5.16e-34	119
Msa0160940	AT5G03530.2	43.624	149	79	4	13	157	11	158	1.56e-33	117
Msa0160940	AT5G03530.1	43.624	149	79	4	13	157	11	158	1.56e-33	117
Msa0160940	AT4G19640.3	41.985	131	74	1	17	145	12	142	3.01e-33	116
Msa0160940	AT4G19640.2	43.200	125	69	1	17	139	12	136	1.05e-32	114
Msa0160940	AT5G64990.2	37.086	151	86	2	16	157	8	158	2.64e-31	112
Msa0160940	AT1G22740.1	41.447	152	80	4	15	157	8	159	2.81e-31	111
Msa0160940	AT2G21880.1	42.105	152	79	4	15	157	9	160	2.17e-30	109
Msa0160940	AT1G52280.1	40.789	152	81	4	15	157	8	159	1.48e-29	107
Msa0160940	AT4G09720.1	40.789	152	81	4	15	157	8	159	3.35e-29	106
Msa0160940	AT5G03520.2	45.946	111	57	2	50	157	40	150	4.83e-29	106
Msa0160940	AT3G09910.3	42.282	149	81	4	13	157	11	158	1.41e-28	105
Msa0160940	AT3G09910.1	42.282	149	81	4	13	157	11	158	1.41e-28	105
Msa0160940	AT3G09910.2	42.282	149	81	4	13	157	11	158	1.41e-28	105
Msa0160940	AT3G09910.5	42.282	149	81	4	13	157	11	158	1.52e-28	104
Msa0160940	AT3G09910.4	42.282	149	81	4	13	157	11	158	1.52e-28	104
Msa0160940	AT3G18820.1	39.474	152	83	4	15	157	8	159	1.91e-28	104
Msa0160940	AT4G09720.4	39.490	157	81	4	15	157	8	164	3.27e-28	103
Msa0160940	AT1G49300.2	38.816	152	84	4	15	157	8	159	1.15e-27	102
Msa0160940	AT1G49300.1	38.816	152	84	4	15	157	8	159	1.15e-27	102
Msa0160940	AT3G16100.1	39.474	152	83	4	15	157	8	159	1.62e-27	102
Msa0160940	AT4G09720.3	38.037	163	81	4	15	157	8	170	3.74e-27	101
Msa0160940	AT5G39620.1	37.086	151	86	4	16	157	6	156	3.72e-24	93.6
Msa0160940	AT2G21880.2	37.333	150	81	4	15	157	9	152	2.60e-22	88.6
Msa0160940	AT2G21880.4	42.188	128	65	4	39	157	8	135	5.03e-22	87.4
Msa0160940	AT2G21880.3	42.188	128	65	4	39	157	8	135	5.03e-22	87.4
Msa0160940	AT5G46025.1	48.810	84	42	1	76	158	7	90	6.61e-22	85.1
Msa0160940	AT2G44690.1	43.590	117	61	4	17	130	20	134	2.32e-21	86.3
Msa0160940	AT4G09720.6	41.803	122	62	4	45	157	4	125	4.87e-20	82.0
Msa0160940	AT4G09720.5	41.803	122	62	4	45	157	4	125	4.87e-20	82.0
Msa0160940	AT4G09720.2	41.803	122	62	4	45	157	4	125	4.87e-20	82.0
Msa0160940	AT5G55080.1	30.556	144	95	3	16	157	14	154	6.30e-20	82.8
Msa0160940	AT4G35020.1	32.867	143	84	5	17	156	8	141	1.18e-18	79.0
Msa0160940	AT4G35020.2	32.867	143	84	5	17	156	8	141	1.18e-18	79.0
Msa0160940	AT4G35020.3	32.867	143	84	5	17	156	8	141	1.18e-18	79.0
Msa0160940	AT1G20090.1	37.607	117	68	4	17	130	7	121	3.27e-18	77.8
Msa0160940	AT1G75840.1	37.607	117	68	4	17	130	8	122	3.91e-18	77.8
Msa0160940	AT5G20020.1	31.126	151	98	4	10	157	7	154	7.64e-18	77.4
Msa0160940	AT5G20010.1	31.126	151	98	4	10	157	7	154	9.32e-18	77.0
Msa0160940	AT5G55190.1	31.126	151	98	4	10	157	7	154	1.06e-17	77.0
Msa0160940	AT5G45970.1	37.607	117	68	4	17	130	8	122	2.42e-17	75.5
Msa0160940	AT4G35020.4	35.088	114	69	4	17	127	8	119	7.01e-17	73.2
Msa0160940	AT4G35020.5	35.088	114	69	4	17	127	8	119	7.01e-17	73.2
Msa0160940	AT3G51300.1	35.897	117	70	4	17	130	8	122	9.52e-17	73.9
Msa0160940	AT2G17800.2	35.897	117	70	4	17	130	8	122	1.07e-16	73.9
Msa0160940	AT2G17800.1	35.897	117	70	4	17	130	8	122	1.07e-16	73.9
Msa0160940	AT4G35950.1	35.897	117	70	4	17	130	8	122	1.20e-16	73.6
Msa0160940	AT4G28950.1	35.593	118	71	4	16	130	7	122	6.17e-16	72.0
Msa0160940	AT3G48040.2	35.897	117	70	4	17	130	10	124	7.55e-16	71.2
Msa0160940	AT5G62880.2	35.043	117	71	4	17	130	10	124	8.53e-16	71.2
Msa0160940	AT3G48040.1	35.897	117	70	4	17	130	10	124	9.71e-16	71.6
Msa0160940	AT5G62880.1	35.043	117	71	4	17	130	10	124	1.79e-15	70.9
Msa0160940	AT4G08190.1	56.364	55	21	1	104	158	67	118	1.22e-13	64.3

Find 29 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGTTAAGGCTCAAATA+TGG	0.249016	1_4:+34887407	Msa0160940:CDS
AATATTGTCATAATGCTAAT+TGG	0.297275	1_4:+34889710	Msa0160940:CDS
ATTATCAATAACAAGAGTTT+TGG	0.313881	1_4:-34887383	None:intergenic
CATAGGATGTCGAATTTATA+CGG	0.347484	1_4:+34887217	None:intergenic
ATTGGCAACAAGTGTGATTT+GGG	0.348821	1_4:+34889728	Msa0160940:CDS
AATTGGCAACAAGTGTGATT+TGG	0.372094	1_4:+34889727	Msa0160940:CDS
TATTGATAATAAAACTGTTA+AGG	0.398879	1_4:+34887396	Msa0160940:CDS
AACTGTTAAGGCTCAAATAT+GGG	0.437288	1_4:+34887408	Msa0160940:CDS
TCACATGGCAAGGTGGTTAG+AGG	0.437761	1_4:+34889664	Msa0160940:CDS
GTTGATTCTAAAGCTACAAT+TGG	0.446862	1_4:+34887346	Msa0160940:CDS
TTGATTGGTGATTCTGCCGT+TGG	0.452506	1_4:+34887280	Msa0160940:CDS
GTATTCAAAGTGGTGTTGAT+TGG	0.495323	1_4:+34887265	Msa0160940:CDS
CAAGGTGGTTAGAGGAACTA+AGG	0.496263	1_4:+34889672	Msa0160940:CDS
CTGATGTCTCCATAAAGAAA+AGG	0.498679	1_4:-34889805	None:intergenic
AGTACCTACTGAAGATGCTC+AGG	0.512755	1_4:+34889763	Msa0160940:CDS
TGATTGGTGATTCTGCCGTT+GGG	0.518440	1_4:+34887281	Msa0160940:CDS
GCGTATTACCGTGGAGCTGT+TGG	0.546431	1_4:+34889599	Msa0160940:CDS
GGGACACTGCTGGTCAAGAA+AGG	0.550300	1_4:+34887428	Msa0160940:CDS
GTGTGATTTGGGAACTCTCA+AGG	0.551809	1_4:+34889739	Msa0160940:CDS
GCTCAAATATGGGACACTGC+TGG	0.573380	1_4:+34887418	Msa0160940:CDS
GCGTCAATCATTTGATCACA+TGG	0.593625	1_4:+34889649	Msa0160940:CDS
AAGGTGGTTAGAGGAACTAA+GGG	0.608900	1_4:+34889673	Msa0160940:CDS
AATCATTTGATCACATGGCA+AGG	0.614175	1_4:+34889654	Msa0160940:CDS
GATCGATTACGTATTCAAAG+TGG	0.635729	1_4:+34887255	Msa0160940:CDS
ACATCGCTCCAACAGCTCCA+CGG	0.650042	1_4:-34889607	None:intergenic
AACTCCTGAGCATCTTCAGT+AGG	0.655334	1_4:-34889767	None:intergenic
GTAACTAGTGCGTATTACCG+TGG	0.661026	1_4:+34889590	Msa0160940:CDS
CATTTGATCACATGGCAAGG+TGG	0.669974	1_4:+34889657	Msa0160940:CDS
AGGTGGTTAGAGGAACTAAG+GGG	0.731917	1_4:+34889674	Msa0160940:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATTTATAATACAACATATT+AGG	+	chr1_4:34888554-34888573	Msa0160940:intron	10.0%
!!!	TATTGATAATAAAACTGTTA+AGG	+	chr1_4:34887396-34887415	Msa0160940:CDS	15.0%
!!!	TTTATTTTTAGAATTAGTGT+TGG	+	chr1_4:34887621-34887640	Msa0160940:intron	15.0%
!!	CATACTTATAACTTATAATA+TGG	+	chr1_4:34887957-34887976	Msa0160940:intron	15.0%
!!!	TCAAATTTTAATACAATTTG+TGG	+	chr1_4:34888168-34888187	Msa0160940:intron	15.0%
!!	AATGATTATTGAATGATTAT+GGG	-	chr1_4:34888658-34888677	None:intergenic	15.0%
!!!	TTATATTGTTTTCTAATAAG+AGG	+	chr1_4:34888983-34889002	Msa0160940:intron	15.0%
!!	TAAATGAAAGAAATATTGTT+TGG	+	chr1_4:34889120-34889139	Msa0160940:intron	15.0%
!!!	ATTATCAATAACAAGAGTTT+TGG	-	chr1_4:34887386-34887405	None:intergenic	20.0%
!!!	TATTTAATTTCATGTCGTTT+TGG	+	chr1_4:34887496-34887515	Msa0160940:intron	20.0%
!!!	TTCAATGATAATGATGATTA+TGG	+	chr1_4:34887538-34887557	Msa0160940:intron	20.0%
!!	TATCTATAAAATCAAACTTG+TGG	+	chr1_4:34887880-34887899	Msa0160940:intron	20.0%
!!	CTGAAAAGTAATTTACAATT+TGG	+	chr1_4:34888120-34888139	Msa0160940:intron	20.0%
!!	ATTGATAAACAATCATTGTT+CGG	-	chr1_4:34888433-34888452	None:intergenic	20.0%
!!!	TTTTAGGAAAGAAATGAAAA+AGG	+	chr1_4:34888503-34888522	Msa0160940:intron	20.0%
!!	TTTAGGAAAGAAATGAAAAA+GGG	+	chr1_4:34888504-34888523	Msa0160940:intron	20.0%
!!	TTAGGAAATAAAACTAACTA+AGG	+	chr1_4:34888572-34888591	Msa0160940:intron	20.0%
!!	GAATGATTATTGAATGATTA+TGG	-	chr1_4:34888659-34888678	None:intergenic	20.0%
!!!	TGTCAGTAATGTTTAATTTT+AGG	-	chr1_4:34888717-34888736	None:intergenic	20.0%
!!	TTTATTTGTAAACTTGGTTT+AGG	+	chr1_4:34889038-34889057	Msa0160940:intron	20.0%
!!!	GAACAAATCATTTTTAGATA+TGG	+	chr1_4:34889156-34889175	Msa0160940:intron	20.0%
!!	AATATTGTCATAATGCTAAT+TGG	+	chr1_4:34889710-34889729	Msa0160940:CDS	20.0%
!!	AATGATAATGATGATTATGG+TGG	+	chr1_4:34887541-34887560	Msa0160940:intron	25.0%
!!	ATGATAATGATGATTATGGT+GGG	+	chr1_4:34887542-34887561	Msa0160940:intron	25.0%
!	AATATAACCACATAAACCAT+CGG	-	chr1_4:34887702-34887721	None:intergenic	25.0%
!!!	AAGTTTCTACTGTTTTTTAG+CGG	-	chr1_4:34887858-34887877	None:intergenic	25.0%
!	GGTAATAAAAAATGTAGTAC+TGG	+	chr1_4:34887978-34887997	Msa0160940:intron	25.0%
!	CATAATACATTACATAGACA+CGG	-	chr1_4:34888033-34888052	None:intergenic	25.0%
!!	ATTGAGTAATGTATGTTTTG+AGG	+	chr1_4:34888144-34888163	Msa0160940:intron	25.0%
!!!	TTGAGTAATGTATGTTTTGA+GGG	+	chr1_4:34888145-34888164	Msa0160940:intron	25.0%
!	CAACATGCAACAATTAATAA+AGG	-	chr1_4:34888202-34888221	None:intergenic	25.0%
!	TTGTTTATCAATGAGTTACA+AGG	+	chr1_4:34888441-34888460	Msa0160940:intron	25.0%
!	TTCATTTCTTTCCTAAAAAG+AGG	-	chr1_4:34888501-34888520	None:intergenic	25.0%
!	TCTACTTGTTTGAACTTTAA+AGG	+	chr1_4:34888605-34888624	Msa0160940:intron	25.0%
!	GATAGTTGAATTTCTTGAAA+AGG	-	chr1_4:34888636-34888655	None:intergenic	25.0%
!!!	TTTTAGGAATAAACAGAGAA+AGG	-	chr1_4:34888701-34888720	None:intergenic	25.0%
!	ATCAAGAATTGATCAAGAAA+AGG	+	chr1_4:34888789-34888808	Msa0160940:intron	25.0%
!	AATAATGATAAATACAGCGA+AGG	-	chr1_4:34888923-34888942	None:intergenic	25.0%
!!!	TGAGGTTTTATTTGTAAACT+TGG	+	chr1_4:34889032-34889051	Msa0160940:intron	25.0%
!	ATATTGTTTGGATTCTGATA+TGG	+	chr1_4:34889132-34889151	Msa0160940:intron	25.0%
!!	GATATGGAAATACTTTTAGA+AGG	+	chr1_4:34889172-34889191	Msa0160940:intron	25.0%
!!!	TTTTTTAATACATACGCAAC+TGG	+	chr1_4:34889226-34889245	Msa0160940:intron	25.0%
!!	ATGTTCTAAACAAGTTCTAA+TGG	+	chr1_4:34889320-34889339	Msa0160940:intron	25.0%
!!!	GAATGTTTGAGACTTTTATT+TGG	+	chr1_4:34889516-34889535	Msa0160940:intron	25.0%
!!	GTTGATTCTAAAGCTACAAT+TGG	+	chr1_4:34887346-34887365	Msa0160940:CDS	30.0%
	AAACTGTTAAGGCTCAAATA+TGG	+	chr1_4:34887407-34887426	Msa0160940:CDS	30.0%
	AACTGTTAAGGCTCAAATAT+GGG	+	chr1_4:34887408-34887427	Msa0160940:CDS	30.0%
	TGATGTGTTTATGATGTGTT+TGG	-	chr1_4:34887573-34887592	None:intergenic	30.0%
!	GAAGTATTACTTGTGTCAAA+TGG	+	chr1_4:34887734-34887753	Msa0160940:intron	30.0%
	CATGTTGTTGATATAGTTGT+GGG	+	chr1_4:34888215-34888234	Msa0160940:intron	30.0%
	GAAAGAAATGAAAAAGGGAA+TGG	+	chr1_4:34888509-34888528	Msa0160940:intron	30.0%
	AATAAACAGAGAAAGGAAAG+GGG	-	chr1_4:34888694-34888713	None:intergenic	30.0%
	GAATAAACAGAGAAAGGAAA+GGG	-	chr1_4:34888695-34888714	None:intergenic	30.0%
	AAGCCAATTAAATTTCATGC+TGG	+	chr1_4:34888815-34888834	Msa0160940:intron	30.0%
	GAAAACAATATAAGCAGCAA+TGG	-	chr1_4:34888976-34888995	None:intergenic	30.0%
!	CACATTTTTGCCATACATAT+TGG	+	chr1_4:34889292-34889311	Msa0160940:intron	30.0%
	AACATGCAAACCAATATGTA+TGG	-	chr1_4:34889305-34889324	None:intergenic	30.0%
!	AAGAGAGAACCTTTTCTTTA+TGG	+	chr1_4:34889796-34889815	Msa0160940:CDS	30.0%
	GATCGATTACGTATTCAAAG+TGG	+	chr1_4:34887255-34887274	Msa0160940:CDS	35.0%
!!	GTATTCAAAGTGGTGTTGAT+TGG	+	chr1_4:34887265-34887284	Msa0160940:CDS	35.0%
!	AAGAAGTTGTGTTTTCCCAA+CGG	-	chr1_4:34887299-34887318	None:intergenic	35.0%
	GTGTTTATGATGTGTTTGGA+GGG	-	chr1_4:34887569-34887588	None:intergenic	35.0%
	TGTGTTTATGATGTGTTTGG+AGG	-	chr1_4:34887570-34887589	None:intergenic	35.0%
	ATTACTTGTGTCAAATGGCA+AGG	+	chr1_4:34887739-34887758	Msa0160940:intron	35.0%
	TTACTTGTGTCAAATGGCAA+GGG	+	chr1_4:34887740-34887759	Msa0160940:intron	35.0%
!	GATTAGTCACCACTAAACAT+TGG	+	chr1_4:34887925-34887944	Msa0160940:intron	35.0%
	AAGTTTCCACCAATGTTTAG+TGG	-	chr1_4:34887937-34887956	None:intergenic	35.0%
	CCTCGTTGAATTACTATCTA+TGG	-	chr1_4:34888081-34888100	None:intergenic	35.0%
	CCATAGATAGTAATTCAACG+AGG	+	chr1_4:34888078-34888097	Msa0160940:intron	35.0%
	TAGATAGTAATTCAACGAGG+TGG	+	chr1_4:34888081-34888100	Msa0160940:intron	35.0%
	GCATGTTGTTGATATAGTTG+TGG	+	chr1_4:34888214-34888233	Msa0160940:intron	35.0%
	TGCATGTCCTAAAATTCACA+AGG	+	chr1_4:34888342-34888361	Msa0160940:intron	35.0%
!	GTTGCTTCCTTGTGAATTTT+AGG	-	chr1_4:34888352-34888371	None:intergenic	35.0%
!!	AAACAGAGTGTCCTCTTTTT+AGG	+	chr1_4:34888487-34888506	Msa0160940:intron	35.0%
	GAAAAAGGGAATGGAATCTA+CGG	+	chr1_4:34888518-34888537	Msa0160940:intron	35.0%
	AGGAAAGGGGAAAGTAATAA+TGG	-	chr1_4:34888681-34888700	None:intergenic	35.0%
	GGAATAAACAGAGAAAGGAA+AGG	-	chr1_4:34888696-34888715	None:intergenic	35.0%
	CAATTAAATTTCATGCTGGC+CGG	+	chr1_4:34888819-34888838	Msa0160940:intron	35.0%
	AATGGGGTGTAATTAAGGAA+AGG	+	chr1_4:34888856-34888875	Msa0160940:intron	35.0%
!	GCCTTCTTTTCATTTGTCTT+TGG	+	chr1_4:34889414-34889433	Msa0160940:intron	35.0%
	GCCAAAGACAAATGAAAAGA+AGG	-	chr1_4:34889418-34889437	None:intergenic	35.0%
!!	GAGACTTTTATTTGGTACTC+TGG	+	chr1_4:34889524-34889543	Msa0160940:intron	35.0%
	AATCATTTGATCACATGGCA+AGG	+	chr1_4:34889654-34889673	Msa0160940:CDS	35.0%
	AATTGGCAACAAGTGTGATT+TGG	+	chr1_4:34889727-34889746	Msa0160940:CDS	35.0%
	ATTGGCAACAAGTGTGATTT+GGG	+	chr1_4:34889728-34889747	Msa0160940:CDS	35.0%
	CTGATGTCTCCATAAAGAAA+AGG	-	chr1_4:34889808-34889827	None:intergenic	35.0%
!!	AACTTCTTGCTCGTTTTTCG+AGG	+	chr1_4:34887311-34887330	Msa0160940:CDS	40.0%
!	GCATCGACACTTTGAATTGA+AGG	+	chr1_4:34887671-34887690	Msa0160940:intron	40.0%
	TGTCAAATGGCAAGGGATTT+GGG	+	chr1_4:34887747-34887766	Msa0160940:intron	40.0%
	GATTTGGGTGTTTAAGCAAG+TGG	+	chr1_4:34887762-34887781	Msa0160940:intron	40.0%
	GGTGTTTAAGCAAGTGGTAT+GGG	+	chr1_4:34887768-34887787	Msa0160940:intron	40.0%
	GTGTTTAAGCAAGTGGTATG+GGG	+	chr1_4:34887769-34887788	Msa0160940:intron	40.0%
	ATCCATTGGACACACAAGAT+GGG	-	chr1_4:34887815-34887834	None:intergenic	40.0%
	AATCCATTGGACACACAAGA+TGG	-	chr1_4:34887816-34887835	None:intergenic	40.0%
!	TGTGTGTCCAATGGATTTCT+CGG	+	chr1_4:34887819-34887838	Msa0160940:intron	40.0%
	ATCTCTACCGAGAAATCCAT+TGG	-	chr1_4:34887829-34887848	None:intergenic	40.0%
	ATCAAACTTGTGGACCAAAG+AGG	+	chr1_4:34887890-34887909	Msa0160940:intron	40.0%
	TCTCCATCGAAAAACCTCTT+TGG	-	chr1_4:34887907-34887926	None:intergenic	40.0%
	TAGTCACCACTAAACATTGG+TGG	+	chr1_4:34887928-34887947	Msa0160940:intron	40.0%
	ATTATGTTTGATGCCCGTGT+CGG	+	chr1_4:34888047-34888066	Msa0160940:intron	40.0%
	ATAGTAATTCAACGAGGTGG+TGG	+	chr1_4:34888084-34888103	Msa0160940:intron	40.0%
	TGTTCAATGGTTTCACCTTG+TGG	+	chr1_4:34888262-34888281	Msa0160940:intron	40.0%
	ACATGCATGACACAGTTTCT+CGG	-	chr1_4:34888329-34888348	None:intergenic	40.0%
	CAATCCTAACAGATGAGTCT+TGG	-	chr1_4:34888387-34888406	None:intergenic	40.0%
	CAAGACTCATCTGTTAGGAT+TGG	+	chr1_4:34888385-34888404	Msa0160940:intron	40.0%
	CGGCCAGCATGAAATTTAAT+TGG	-	chr1_4:34888821-34888840	None:intergenic	40.0%
!!	GAGGTAATGGGGTGTAATTA+AGG	+	chr1_4:34888851-34888870	Msa0160940:intron	40.0%
	GGTGTAATTAAGGAAAGGTG+TGG	+	chr1_4:34888861-34888880	Msa0160940:intron	40.0%
	AGGTTTATTGCCATCCTAGT+GGG	+	chr1_4:34889003-34889022	Msa0160940:intron	40.0%
	AAACCTCAAAAGAACCCACT+AGG	-	chr1_4:34889020-34889039	None:intergenic	40.0%
!	AACAAGTTCTAATGGCGCAA+TGG	+	chr1_4:34889328-34889347	Msa0160940:intron	40.0%
!	ACAAGTTCTAATGGCGCAAT+GGG	+	chr1_4:34889329-34889348	Msa0160940:intron	40.0%
	AAGAAGGCAACATACGATGT+AGG	-	chr1_4:34889402-34889421	None:intergenic	40.0%
	ACCTAAGCTAATGCAGAAGA+AGG	-	chr1_4:34889444-34889463	None:intergenic	40.0%
	ATCTCTTCTCTCATTCTCTC+AGG	+	chr1_4:34889558-34889577	Msa0160940:intron	40.0%
	GCGTCAATCATTTGATCACA+TGG	+	chr1_4:34889649-34889668	Msa0160940:CDS	40.0%
	AAGGTGGTTAGAGGAACTAA+GGG	+	chr1_4:34889673-34889692	Msa0160940:CDS	40.0%
!	TTGATTGGTGATTCTGCCGT+TGG	+	chr1_4:34887280-34887299	Msa0160940:CDS	45.0%
!	TGATTGGTGATTCTGCCGTT+GGG	+	chr1_4:34887281-34887300	Msa0160940:CDS	45.0%
	GTGTCAAATGGCAAGGGATT+TGG	+	chr1_4:34887746-34887765	Msa0160940:intron	45.0%
	GGGTGTTTAAGCAAGTGGTA+TGG	+	chr1_4:34887767-34887786	Msa0160940:intron	45.0%
!!	GGACCAAAGAGGTTTTTCGA+TGG	+	chr1_4:34887901-34887920	Msa0160940:intron	45.0%
!!	AGTACTGGTGTCTATGCGTA+AGG	+	chr1_4:34887993-34888012	Msa0160940:intron	45.0%
!	GTACTGGTGTCTATGCGTAA+GGG	+	chr1_4:34887994-34888013	Msa0160940:intron	45.0%
	GATATAGTTGTGGGTGCTTG+TGG	+	chr1_4:34888224-34888243	Msa0160940:intron	45.0%
	TTGTGGGTGCTTGTGGAAAA+GGG	+	chr1_4:34888231-34888250	Msa0160940:intron	45.0%
	TGGTTTCACCTTGTGGTATC+TGG	+	chr1_4:34888269-34888288	Msa0160940:intron	45.0%
	GGTTTCACCTTGTGGTATCT+GGG	+	chr1_4:34888270-34888289	Msa0160940:intron	45.0%
	GTTTCACCTTGTGGTATCTG+GGG	+	chr1_4:34888271-34888290	Msa0160940:intron	45.0%
	TGAGTCTTGGCTCAACGATA+AGG	-	chr1_4:34888374-34888393	None:intergenic	45.0%
	TGAGCCAAGACTCATCTGTT+AGG	+	chr1_4:34888380-34888399	Msa0160940:intron	45.0%
	CCATTACCTCCCTTGATTTC+CGG	-	chr1_4:34888841-34888860	None:intergenic	45.0%
	CGGAAATCAAGGGAGGTAAT+GGG	+	chr1_4:34888839-34888858	Msa0160940:intron	45.0%
	GGAAATCAAGGGAGGTAATG+GGG	+	chr1_4:34888840-34888859	Msa0160940:intron	45.0%
	GAGGTTTATTGCCATCCTAG+TGG	+	chr1_4:34889002-34889021	Msa0160940:intron	45.0%
	CTCAAAAGAACCCACTAGGA+TGG	-	chr1_4:34889016-34889035	None:intergenic	45.0%
!!!	CATCCTAGTGGGTTCTTTTG+AGG	+	chr1_4:34889014-34889033	Msa0160940:intron	45.0%
!	GCCTTCTTCTGCATTAGCTT+AGG	+	chr1_4:34889440-34889459	Msa0160940:intron	45.0%
	GTAACTAGTGCGTATTACCG+TGG	+	chr1_4:34889590-34889609	Msa0160940:CDS	45.0%
	CATTTGATCACATGGCAAGG+TGG	+	chr1_4:34889657-34889676	Msa0160940:CDS	45.0%
	CAAGGTGGTTAGAGGAACTA+AGG	+	chr1_4:34889672-34889691	Msa0160940:CDS	45.0%
	AGGTGGTTAGAGGAACTAAG+GGG	+	chr1_4:34889674-34889693	Msa0160940:CDS	45.0%
!	GTGTGATTTGGGAACTCTCA+AGG	+	chr1_4:34889739-34889758	Msa0160940:CDS	45.0%
	AGTACCTACTGAAGATGCTC+AGG	+	chr1_4:34889763-34889782	Msa0160940:CDS	45.0%
	AACTCCTGAGCATCTTCAGT+AGG	-	chr1_4:34889770-34889789	None:intergenic	45.0%
	GCTCAAATATGGGACACTGC+TGG	+	chr1_4:34887418-34887437	Msa0160940:CDS	50.0%
!	TGAATTGAAGGCGTGTCCGA+TGG	+	chr1_4:34887683-34887702	Msa0160940:intron	50.0%
!!	TATGGGGTACCGAGGGTAAA+GGG	+	chr1_4:34887785-34887804	Msa0160940:intron	50.0%
	GACCCATCTTGTGTGTCCAA+TGG	+	chr1_4:34887810-34887829	Msa0160940:intron	50.0%
	GTTGTGGGTGCTTGTGGAAA+AGG	+	chr1_4:34888230-34888249	Msa0160940:intron	50.0%
	AAGGGCGGGTGAATGTTCAA+TGG	+	chr1_4:34888249-34888268	Msa0160940:intron	50.0%
!	GACACAGTTTCTCGGCTTGT+GGG	-	chr1_4:34888321-34888340	None:intergenic	50.0%
!	TGACACAGTTTCTCGGCTTG+TGG	-	chr1_4:34888322-34888341	None:intergenic	50.0%
	TTCATGCTGGCCGGAAATCA+AGG	+	chr1_4:34888828-34888847	Msa0160940:intron	50.0%
	TCATGCTGGCCGGAAATCAA+GGG	+	chr1_4:34888829-34888848	Msa0160940:intron	50.0%
	CCGGAAATCAAGGGAGGTAA+TGG	+	chr1_4:34888838-34888857	Msa0160940:intron	50.0%
	TCACATGGCAAGGTGGTTAG+AGG	+	chr1_4:34889664-34889683	Msa0160940:CDS	50.0%
	GGGACACTGCTGGTCAAGAA+AGG	+	chr1_4:34887428-34887447	Msa0160940:CDS	55.0%
	GGCGTGTCCGATGGTTTATG+TGG	+	chr1_4:34887692-34887711	Msa0160940:intron	55.0%
!!	CAAGTGGTATGGGGTACCGA+GGG	+	chr1_4:34887778-34887797	Msa0160940:intron	55.0%
!!	GTATGGGGTACCGAGGGTAA+AGG	+	chr1_4:34887784-34887803	Msa0160940:intron	55.0%
	ATGGGTCCTCCCTTTACCCT+CGG	-	chr1_4:34887797-34887816	None:intergenic	55.0%
!	TTTGATGCCCGTGTCGGTGT+CGG	+	chr1_4:34888053-34888072	Msa0160940:intron	55.0%
	TGGGTGCTTGTGGAAAAGGG+CGG	+	chr1_4:34888234-34888253	Msa0160940:intron	55.0%
	TCACCTTGTGGTATCTGGGG+AGG	+	chr1_4:34888274-34888293	Msa0160940:intron	55.0%
	CACCTTGTGGTATCTGGGGA+GGG	+	chr1_4:34888275-34888294	Msa0160940:intron	55.0%
	TACCCTCCCCAGATACCACA+AGG	-	chr1_4:34888280-34888299	None:intergenic	55.0%
	GCGTATTACCGTGGAGCTGT+TGG	+	chr1_4:34889599-34889618	Msa0160940:CDS	55.0%
	ACATCGCTCCAACAGCTCCA+CGG	-	chr1_4:34889610-34889629	None:intergenic	55.0%
!!	GCAAGTGGTATGGGGTACCG+AGG	+	chr1_4:34887777-34887796	Msa0160940:intron	60.0%
	TATGGAGCCGACACCGACAC+GGG	-	chr1_4:34888063-34888082	None:intergenic	60.0%
	CTATGGAGCCGACACCGACA+CGG	-	chr1_4:34888064-34888083	None:intergenic	60.0%
	GGGTGCTTGTGGAAAAGGGC+GGG	+	chr1_4:34888235-34888254	Msa0160940:intron	60.0%
	TGCTGGCCGGAAATCAAGGG+AGG	+	chr1_4:34888832-34888851	Msa0160940:intron	60.0%
!!	GGGGTACCGAGGGTAAAGGG+AGG	+	chr1_4:34887788-34887807	Msa0160940:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	34887223	34889832	34887223	ID=Msa0160940;Name=Msa0160940
chr1_4	mRNA	34887223	34889832	34887223	ID=Msa0160940-mRNA-1;Parent=Msa0160940;Name=Msa0160940-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0\|0\|1\|0\|0.5\|2\|0\|158
chr1_4	exon	34887223	34887449	34887223	ID=Msa0160940-mRNA-1:exon:10610;Parent=Msa0160940-mRNA-1
chr1_4	exon	34889586	34889832	34889586	ID=Msa0160940-mRNA-1:exon:10611;Parent=Msa0160940-mRNA-1
chr1_4	CDS	34887223	34887449	34887223	ID=Msa0160940-mRNA-1:cds;Parent=Msa0160940-mRNA-1
chr1_4	CDS	34889586	34889832	34889586	ID=Msa0160940-mRNA-1:cds;Parent=Msa0160940-mRNA-1

Gene Sequence

>Msa0160940

ATGTCGAATTTATACGGTGATTATAATCAGAAGATCGATTACGTATTCAAAGTGGTGTTGATTGGTGATTCTGCCGTTGGGAAAACACAACTTCTTGCTCGTTTTTCGAGGAATCAATTTAACGTTGATTCTAAAGCTACAATTGGTGTTGAGTTTCAAACCAAAACTCTTGTTATTGATAATAAAACTGTTAAGGCTCAAATATGGGACACTGCTGGTCAAGAAAGAGCAGTAACTAGTGCGTATTACCGTGGAGCTGTTGGAGCGATGTTAGTTTACGACATGACTAAGCGTCAATCATTTGATCACATGGCAAGGTGGTTAGAGGAACTAAGGGGTCATGCAGACACAAATATTGTCATAATGCTAATTGGCAACAAGTGTGATTTGGGAACTCTCAAGGCAGTACCTACTGAAGATGCTCAGGAGTTTGCACAAAGAGAGAACCTTTTCTTTATGGAGACATCAGCACTA

Protein sequence

>Msa0160940

MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNQFNVDSKATIGVEFQTKTLVIDNKTVKAQIWDTAGQERAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADTNIVIMLIGNKCDLGTLKAVPTEDAQEFAQRENLFFMETSAL