AlfalfaGEDB | Msa0165550

M. sativa cultivar zhongmu-4 / Msa0165550

KEGG: K15728
GO: GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009247 GO:0009987 GO:0016020 GO:0019374 GO:0019375 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046467 GO:0048046 GO:0071704 GO:0090407 GO:1901135 GO:1901137 GO:1901576 GO:1903509
PFAM: PF08235.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0165550	GAU15407.1	96.721	61	2	0	4	64	353	413	9.32e-34	131

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0165550	sp\|Q9FMN2\|PAH2_ARATH	83.871	62	10	0	4	65	741	802	1.14e-30	115

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0165550	A0A072VEK5	95.082	61	3	0	4	64	190	250	9.88e-34	127

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0020930	Msa0165550	0.801550	8.539784e-49	-8.615850e-47
Msa0026450	Msa0165550	0.801651	8.143384e-49	-8.615850e-47
Msa0048000	Msa0165550	0.807192	5.699887e-50	-8.615850e-47
Msa0145260	Msa0165550	0.801102	1.055112e-48	-8.615850e-47
Msa0159930	Msa0165550	0.805239	1.469071e-49	-8.615850e-47
Msa0165510	Msa0165550	0.807321	5.350687e-50	-8.615850e-47
Msa0165550	Msa0181360	0.800405	1.463471e-48	-8.615850e-47
Msa0165550	Msa0220580	0.803316	3.694785e-49	-8.615850e-47
Msa0165550	Msa0221060	0.806709	7.211788e-50	-8.615850e-47
Msa0165550	Msa0243710	0.808766	2.635932e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0165550	MtrunA17_Chr1g0153651	95.082	61	3	4	64	330	390	1.17e-36	127
Msa0165550	MtrunA17_Chr3g0133821	81.967	61	11	4	64	643	703	2.13e-31	114
Msa0165550	MtrunA17_Chr7g0263401	79.032	62	13	4	65	678	739	1.21e-28	106
Msa0165550	MtrunA17_Chr1g0181991	75.806	62	15	4	65	736	797	7.76e-28	103

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0165550	AT5G42870.3	83.871	62	10	4	65	741	802	1.16e-31	115
Msa0165550	AT5G42870.2	83.871	62	10	4	65	736	797	1.16e-31	115
Msa0165550	AT5G42870.1	83.871	62	10	4	65	741	802	1.16e-31	115
Msa0165550	AT3G09560.3	74.194	62	16	4	65	714	775	4.18e-27	102
Msa0165550	AT3G09560.1	74.194	62	16	4	65	714	775	4.18e-27	102
Msa0165550	AT3G09560.2	74.194	62	16	4	65	714	775	4.18e-27	102
Msa0165550	AT3G09560.4	74.194	62	16	4	65	714	775	4.18e-27	102

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Find 78 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATTTATAATTAATCCC+AGG	0.577065	1_4:+46151081	Msa0165550:three_prime_UTR
AAGGTTGAATAGGAATTGTC+TGG	0.463826	1_4:-46150473	None:intergenic
AATCATCTGTCTGGTGAAGG+TGG	0.561005	1_4:+46151509	Msa0165550:three_prime_UTR
AATTCTACAAGTGTACTATC+CGG	0.542398	1_4:-46149846	None:intergenic
ACTGCTCAGATGAGTCTGTA+GGG	0.526615	1_4:-46151283	None:intergenic
ACTTGTTTAAATATTCTTCA+TGG	0.347003	1_4:-46152622	None:intergenic
AGAATGTTGCTCTTGTCATG+GGG	0.615248	1_4:-46152382	None:intergenic
AGAATTAAGCTCCAGAACAA+AGG	0.602514	1_4:-46149918	None:intergenic
AGCATAAAAGGATTTGAATC+AGG	0.417707	1_4:-46150997	None:intergenic
ATAAAAGGATTTGAATCAGG+AGG	0.622383	1_4:-46150994	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCTACAAGTGTACTATC+CGG	-	chr1_4:46149849-46149868	None:intergenic	30.0%
CATTGTCATAATCAATCATG+TGG	+	chr1_4:46150159-46150178	Msa0165550:intron	30.0%
ATTTATGTATCACCTGGTTA+AGG	-	chr1_4:46150495-46150514	None:intergenic	30.0%
CAAAACAAGAAGACAAAAGA+AGG	+	chr1_4:46150544-46150563	Msa0165550:intron	30.0%
TGCATCATAACAAAACAAAC+AGG	-	chr1_4:46150583-46150602	None:intergenic	30.0%
TTTCCTTCTCTATATAGAGA+AGG	+	chr1_4:46150654-46150673	Msa0165550:three_prime_UTR	30.0%
ATACCTTCTCTATATAGAGA+AGG	-	chr1_4:46150660-46150679	None:intergenic	30.0%
AAATTGCATGTTTAGAGGTT+TGG	+	chr1_4:46150872-46150891	Msa0165550:intron	30.0%
AAGTTGAATTTAATGCTTCC+AGG	+	chr1_4:46150954-46150973	Msa0165550:intron	30.0%
ATAAAAGGATTTGAATCAGG+AGG	-	chr1_4:46150997-46151016	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	46149813	46152704	46149813	ID=Msa0165550;Name=Msa0165550
chr1_4	mRNA	46149813	46152704	46149813	ID=Msa0165550-mRNA-1;Parent=Msa0165550;Name=Msa0165550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=166\|1\|1\|1\|0.28\|0.25\|8\|783\|71
chr1_4	exon	46149813	46150074	46149813	ID=Msa0165550-mRNA-1:exon:13216;Parent=Msa0165550-mRNA-1
chr1_4	exon	46150415	46150501	46150415	ID=Msa0165550-mRNA-1:exon:13217;Parent=Msa0165550-mRNA-1
chr1_4	exon	46150604	46150675	46150604	ID=Msa0165550-mRNA-1:exon:13218;Parent=Msa0165550-mRNA-1
chr1_4	exon	46150845	46150888	46150845	ID=Msa0165550-mRNA-1:exon:13219;Parent=Msa0165550-mRNA-1
chr1_4	exon	46150976	46151102	46150976	ID=Msa0165550-mRNA-1:exon:13220;Parent=Msa0165550-mRNA-1
chr1_4	exon	46151203	46151304	46151203	ID=Msa0165550-mRNA-1:exon:13221;Parent=Msa0165550-mRNA-1
chr1_4	exon	46151433	46151565	46151433	ID=Msa0165550-mRNA-1:exon:13222;Parent=Msa0165550-mRNA-1
chr1_4	exon	46152367	46152704	46152367	ID=Msa0165550-mRNA-1:exon:13223;Parent=Msa0165550-mRNA-1
chr1_4	five_prime_UTR	46149813	46149978	46149813	ID=Msa0165550-mRNA-1:five_prime_utr;Parent=Msa0165550-mRNA-1
chr1_4	CDS	46149979	46150074	46149979	ID=Msa0165550-mRNA-1:cds;Parent=Msa0165550-mRNA-1
chr1_4	CDS	46150415	46150501	46150415	ID=Msa0165550-mRNA-1:cds;Parent=Msa0165550-mRNA-1
chr1_4	CDS	46150604	46150636	46150604	ID=Msa0165550-mRNA-1:cds;Parent=Msa0165550-mRNA-1
chr1_4	three_prime_UTR	46150637	46150675	46150637	ID=Msa0165550-mRNA-1:three_prime_utr;Parent=Msa0165550-mRNA-1
chr1_4	three_prime_UTR	46150845	46150888	46150845	ID=Msa0165550-mRNA-1:three_prime_utr;Parent=Msa0165550-mRNA-1
chr1_4	three_prime_UTR	46150976	46151102	46150976	ID=Msa0165550-mRNA-1:three_prime_utr;Parent=Msa0165550-mRNA-1
chr1_4	three_prime_UTR	46151203	46151304	46151203	ID=Msa0165550-mRNA-1:three_prime_utr;Parent=Msa0165550-mRNA-1
chr1_4	three_prime_UTR	46151433	46151565	46151433	ID=Msa0165550-mRNA-1:three_prime_utr;Parent=Msa0165550-mRNA-1
chr1_4	three_prime_UTR	46152367	46152704	46152367	ID=Msa0165550-mRNA-1:three_prime_utr;Parent=Msa0165550-mRNA-1

Gene Sequence	>Msa0165550 ATGTGTTGCAGGTCAGACGTTCTAGGTCAATTCATGCCTTTAGTTGGGATTGACTGGTCACAGACAGGAGTTGCTCATTTATTTTCAGAAATCAAGGAAAATGGCTACCAGATACTTTTTCTCAGTGCTCGTGCAATTTCTCAGGCCCATCACACCAGACAATTCCTATTCAACCTTAACCAGGATGGAAAGTCTTACCAGATGGTCCTGTTGTAA
Protein sequence	>Msa0165550 MCCRSDVLGQFMPLVGIDWSQTGVAHLFSEIKENGYQILFLSARAISQAHHTRQFLFNLNQDGKSYQMVLL*