Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895950 | KEH26793.1 | 70.909 | 110 | 31 | 1 | 1 | 110 | 991 | 1099 | 3.53e-39 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895950 | A0A072UCL0 | 70.909 | 110 | 31 | 1 | 1 | 110 | 991 | 1099 | 1.69e-39 | 149 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa0895950 | 0.829430 | 5.170321e-55 | -8.615850e-47 |
| Msa0015400 | Msa0895950 | 0.818011 | 2.448029e-52 | -8.615850e-47 |
| Msa0017510 | Msa0895950 | 0.817681 | 2.907440e-52 | -8.615850e-47 |
| Msa0045790 | Msa0895950 | 0.803400 | 3.549268e-49 | -8.615850e-47 |
| Msa0046160 | Msa0895950 | 0.800352 | 1.500717e-48 | -8.615850e-47 |
| Msa0052730 | Msa0895950 | 0.809474 | 1.858737e-50 | -8.615850e-47 |
| Msa0616160 | Msa0895950 | 0.800170 | 1.634369e-48 | -8.615850e-47 |
| Msa0622650 | Msa0895950 | 0.803503 | 3.380109e-49 | -8.615850e-47 |
| Msa0626090 | Msa0895950 | 0.808636 | 2.809433e-50 | -8.615850e-47 |
| Msa0657970 | Msa0895950 | 0.820628 | 6.203675e-53 | -8.615850e-47 |
| Msa0661650 | Msa0895950 | 0.805907 | 1.064237e-49 | -8.615850e-47 |
| Msa0663240 | Msa0895950 | 0.812151 | 4.896651e-51 | -8.615850e-47 |
| Msa0688480 | Msa0895950 | 0.810651 | 1.036794e-50 | -8.615850e-47 |
| Msa0693380 | Msa0895950 | 0.814236 | 1.707273e-51 | -8.615850e-47 |
| Msa0703050 | Msa0895950 | 0.807274 | 5.475558e-50 | -8.615850e-47 |
| Msa0723990 | Msa0895950 | 0.817241 | 3.651792e-52 | -8.615850e-47 |
| Msa0727710 | Msa0895950 | 0.800120 | 1.672813e-48 | -8.615850e-47 |
| Msa0731940 | Msa0895950 | 0.816546 | 5.230750e-52 | -8.615850e-47 |
| Msa0735170 | Msa0895950 | 0.830579 | 2.712219e-55 | -8.615850e-47 |
| Msa0740510 | Msa0895950 | 0.804493 | 2.104331e-49 | -8.615850e-47 |
| Msa0742380 | Msa0895950 | 0.806899 | 6.572886e-50 | -8.615850e-47 |
| Msa0756320 | Msa0895950 | 0.804118 | 2.518505e-49 | -8.615850e-47 |
| Msa0760130 | Msa0895950 | 0.814462 | 1.522282e-51 | -8.615850e-47 |
| Msa0762360 | Msa0895950 | 0.832699 | 8.146114e-56 | -8.615850e-47 |
| Msa0764570 | Msa0895950 | 0.816718 | 4.787386e-52 | -8.615850e-47 |
| Msa0766630 | Msa0895950 | 0.803086 | 4.123048e-49 | -8.615850e-47 |
| Msa0786500 | Msa0895950 | 0.803755 | 2.996668e-49 | -8.615850e-47 |
| Msa0800210 | Msa0895950 | 0.802699 | 4.955450e-49 | -8.615850e-47 |
| Msa0810220 | Msa0895950 | 0.811971 | 5.360030e-51 | -8.615850e-47 |
| Msa0820770 | Msa0895950 | 0.810526 | 1.103340e-50 | -8.615850e-47 |
| Msa0822870 | Msa0895950 | 0.812729 | 3.662445e-51 | -8.615850e-47 |
| Msa0825340 | Msa0895950 | 0.816818 | 4.545588e-52 | -8.615850e-47 |
| Msa0834770 | Msa0895950 | 0.804545 | 2.051727e-49 | -8.615850e-47 |
| Msa0838580 | Msa0895950 | 0.820342 | 7.214880e-53 | -8.615850e-47 |
| Msa0130970 | Msa0895950 | 0.810082 | 1.375437e-50 | -8.615850e-47 |
| Msa0131770 | Msa0895950 | 0.828655 | 7.965849e-55 | -8.615850e-47 |
| Msa0143560 | Msa0895950 | 0.809747 | 1.623752e-50 | -8.615850e-47 |
| Msa0157290 | Msa0895950 | 0.817974 | 2.496677e-52 | -8.615850e-47 |
| Msa0161900 | Msa0895950 | 0.802132 | 6.485073e-49 | -8.615850e-47 |
| Msa0165550 | Msa0895950 | 0.801300 | 9.609148e-49 | -8.615850e-47 |
| Msa0166870 | Msa0895950 | 0.801354 | 9.368997e-49 | -8.615850e-47 |
| Msa0178930 | Msa0895950 | 0.805340 | 1.399260e-49 | -8.615850e-47 |
| Msa0188830 | Msa0895950 | 0.800194 | 1.616159e-48 | -8.615850e-47 |
| Msa0210450 | Msa0895950 | 0.811940 | 5.444193e-51 | -8.615850e-47 |
| Msa0211150 | Msa0895950 | 0.805609 | 1.229219e-49 | -8.615850e-47 |
| Msa0213520 | Msa0895950 | 0.805786 | 1.128432e-49 | -8.615850e-47 |
| Msa0218810 | Msa0895950 | 0.816773 | 4.652415e-52 | -8.615850e-47 |
| Msa0220580 | Msa0895950 | 0.806543 | 7.816002e-50 | -8.615850e-47 |
| Msa0376350 | Msa0895950 | 0.814162 | 1.772879e-51 | -8.615850e-47 |
| Msa0388960 | Msa0895950 | 0.816999 | 4.138779e-52 | -8.615850e-47 |
| Msa0389340 | Msa0895950 | 0.805896 | 1.069681e-49 | -8.615850e-47 |
| Msa0402290 | Msa0895950 | 0.806499 | 7.985180e-50 | -8.615850e-47 |
| Msa0424790 | Msa0895950 | 0.807646 | 4.565526e-50 | -8.615850e-47 |
| Msa0453000 | Msa0895950 | 0.804364 | 2.237959e-49 | -8.615850e-47 |
| Msa0239240 | Msa0895950 | 0.807830 | 4.172238e-50 | -8.615850e-47 |
| Msa0245940 | Msa0895950 | 0.811181 | 7.959515e-51 | -8.615850e-47 |
| Msa0273100 | Msa0895950 | 0.803219 | 3.870037e-49 | -8.615850e-47 |
| Msa0284520 | Msa0895950 | 0.810763 | 9.807375e-51 | -8.615850e-47 |
| Msa0285170 | Msa0895950 | 0.808663 | 2.772942e-50 | -8.615850e-47 |
| Msa0287650 | Msa0895950 | 0.805214 | 1.487461e-49 | -8.615850e-47 |
| Msa0292930 | Msa0895950 | 0.803935 | 2.748473e-49 | -8.615850e-47 |
| Msa0341540 | Msa0895950 | 0.805299 | 1.427819e-49 | -8.615850e-47 |
| Msa0484780 | Msa0895950 | 0.832301 | 1.021920e-55 | -8.615850e-47 |
| Msa0495320 | Msa0895950 | 0.815916 | 7.234505e-52 | -8.615850e-47 |
| Msa0495330 | Msa0895950 | 0.809162 | 2.168377e-50 | -8.615850e-47 |
| Msa0512900 | Msa0895950 | 0.804448 | 2.149395e-49 | -8.615850e-47 |
| Msa0516170 | Msa0895950 | 0.815006 | 1.153191e-51 | -8.615850e-47 |
| Msa0523460 | Msa0895950 | 0.807576 | 4.724786e-50 | -8.615850e-47 |
| Msa0532350 | Msa0895950 | 0.809756 | 1.616403e-50 | -8.615850e-47 |
| Msa0585230 | Msa0895950 | 0.801612 | 8.295830e-49 | -8.615850e-47 |
| Msa0842710 | Msa0895950 | 0.813274 | 2.781490e-51 | -8.615850e-47 |
| Msa0861090 | Msa0895950 | 0.806625 | 7.509653e-50 | -8.615850e-47 |
| Msa0880140 | Msa0895950 | 0.811870 | 5.638046e-51 | -8.615850e-47 |
| Msa0885280 | Msa0895950 | 0.800103 | 1.686558e-48 | -8.615850e-47 |
| Msa0895950 | Msa0909120 | 0.811616 | 6.403467e-51 | -8.615850e-47 |
| Msa0895950 | Msa0909140 | 0.811856 | 5.680019e-51 | -8.615850e-47 |
| Msa0895950 | Msa0947660 | 0.805403 | 1.357773e-49 | -8.615850e-47 |
| Msa0895950 | Msa0954130 | 0.806844 | 6.752931e-50 | -8.615850e-47 |
| Msa0895950 | Msa0954550 | 0.801271 | 9.740614e-49 | -8.615850e-47 |
| Msa0895950 | Msa0954920 | 0.810770 | 9.772616e-51 | -8.615850e-47 |
| Msa0895950 | Msa0969450 | 0.855774 | 5.034389e-62 | -8.615850e-47 |
| Msa0895950 | Msa0969520 | 0.847320 | 1.246036e-59 | -8.615850e-47 |
| Msa0895950 | Msa0975220 | 0.838609 | 2.597368e-57 | -8.615850e-47 |
| Msa0895950 | Msa0989220 | 0.803115 | 4.066004e-49 | -8.615850e-47 |
| Msa0895950 | Msa1014540 | 0.805987 | 1.023555e-49 | -8.615850e-47 |
| Msa0895950 | Msa1019000 | 0.800324 | 1.520480e-48 | -8.615850e-47 |
| Msa0895950 | Msa1052830 | 0.809298 | 2.027542e-50 | -8.615850e-47 |
| Msa0895950 | Msa1075220 | -0.810114 | 1.353844e-50 | -8.615850e-47 |
| Msa0895950 | Msa1081330 | 0.815442 | 9.226754e-52 | -8.615850e-47 |
| Msa0895950 | Msa1082500 | 0.832892 | 7.294083e-56 | -8.615850e-47 |
| Msa0895950 | Msa1121490 | 0.826996 | 1.995901e-54 | -8.615850e-47 |
| Msa0895950 | Msa1122520 | 0.802291 | 6.013760e-49 | -8.615850e-47 |
| Msa0895950 | Msa1161580 | 0.807303 | 5.398621e-50 | -8.615850e-47 |
| Msa0895950 | Msa1162550 | -0.811183 | 7.954235e-51 | -8.615850e-47 |
| Msa0895950 | Msa1173100 | 0.816293 | 5.957395e-52 | -8.615850e-47 |
| Msa0895950 | Msa1186060 | 0.807573 | 4.731034e-50 | -8.615850e-47 |
| Msa0895950 | Msa1250530 | 0.800891 | 1.164854e-48 | -8.615850e-47 |
| Msa0895950 | Msa1270610 | 0.800588 | 1.343080e-48 | -8.615850e-47 |
| Msa0895950 | Msa1284680 | 0.806112 | 9.636018e-50 | -8.615850e-47 |
| Msa0895950 | Msa1309030 | 0.807562 | 4.756811e-50 | -8.615850e-47 |
| Msa0895950 | Msa1313150 | 0.807534 | 4.822555e-50 | -8.615850e-47 |
| Msa0895950 | Msa1327680 | 0.805276 | 1.443109e-49 | -8.615850e-47 |
| Msa0895950 | Msa1353470 | 0.819345 | 1.219745e-52 | -8.615850e-47 |
| Msa0895950 | Msa1353980 | 0.802182 | 6.335059e-49 | -8.615850e-47 |
| Msa0895950 | Msa1359040 | 0.802731 | 4.881779e-49 | -8.615850e-47 |
| Msa0895950 | Msa1372760 | 0.805253 | 1.459632e-49 | -8.615850e-47 |
| Msa0895950 | Msa1377760 | 0.819240 | 1.288638e-52 | -8.615850e-47 |
| Msa0895950 | Msa1384350 | 0.805832 | 1.103313e-49 | -8.615850e-47 |
| Msa0895950 | Msa1392260 | 0.809100 | 2.235686e-50 | -8.615850e-47 |
| Msa0895950 | Msa1392820 | 0.817982 | 2.486396e-52 | -8.615850e-47 |
| Msa0895950 | Msa1397610 | 0.809187 | 2.141967e-50 | -8.615850e-47 |
| Msa0895950 | Msa1397860 | 0.809558 | 1.783253e-50 | -8.615850e-47 |
| Msa0895950 | Msa1411020 | 0.814941 | 1.192197e-51 | -8.615850e-47 |
| Msa0895950 | Msa1412640 | 0.801462 | 8.902324e-49 | -8.615850e-47 |
| Msa0895950 | Msa1420490 | 0.805774 | 1.134957e-49 | -8.615850e-47 |
| Msa0895950 | Msa1420820 | 0.801089 | 1.061445e-48 | -8.615850e-47 |
| Msa0895950 | Msa1423390 | 0.807561 | 4.759363e-50 | -8.615850e-47 |
| Msa0895950 | Msa1423880 | 0.816154 | 6.400661e-52 | -8.615850e-47 |
| Msa0895950 | Msa1424290 | 0.812167 | 4.857587e-51 | -8.615850e-47 |
| Msa0895950 | Msa1434350 | 0.811842 | 5.719718e-51 | -8.615850e-47 |
| Msa0895950 | Msa1435270 | 0.826289 | 2.944528e-54 | -8.615850e-47 |
| Msa0895950 | Msa1439320 | 0.815213 | 1.037216e-51 | -8.615850e-47 |
| Msa0895950 | Msa1440370 | 0.807625 | 4.613241e-50 | -8.615850e-47 |
| Msa0895950 | Msa1440810 | 0.807311 | 5.377029e-50 | -8.615850e-47 |
| Msa0895950 | Msa1466540 | 0.803908 | 2.784438e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895950 | MtrunA17_Chr6g0480051 | 70.909 | 110 | 31 | 1 | 1 | 110 | 750 | 858 | 3.65e-43 | 149 |
| Msa0895950 | MtrunA17_Chr6g0479651 | 77.907 | 86 | 19 | 0 | 1 | 86 | 992 | 1077 | 1.24e-37 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 52 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAGACTCTTAAAGAAAA+AGG | 0.207927 | 6_1:+85008660 | None:intergenic |
| GTACCAGTCTTGCACATTAA+AGG | 0.223030 | 6_1:+85008572 | None:intergenic |
| ACTCCTTAAGACTCGGTATC+TGG | 0.230178 | 6_1:+85008176 | None:intergenic |
| AATCATGTGAACTTCCATTT+AGG | 0.260182 | 6_1:-85008091 | Msa0895950:exon |
| ATTAGAATAATATTACATTA+TGG | 0.304659 | 6_1:-85007927 | Msa0895950:three_prime_UTR |
| GCAGACAATGCTATTAGATT+TGG | 0.337287 | 6_1:+85008995 | None:intergenic |
| ACAATCAGTTATGAAATTAC+TGG | 0.339250 | 6_1:-85008334 | Msa0895950:intron |
| AAGTTTAGCCTCACTTTAGA+AGG | 0.342150 | 6_1:-85007876 | Msa0895950:three_prime_UTR |
| CATATTAAATCAAATGGTTA+TGG | 0.361649 | 6_1:+85008902 | None:intergenic |
| TACCAGTCTTGCACATTAAA+GGG | 0.376480 | 6_1:+85008573 | None:intergenic |
| AATGGATTCATGCTGAAGTT+AGG | 0.385996 | 6_1:-85008494 | Msa0895950:CDS |
| GATAGTAATTAACCATCTTT+CGG | 0.413820 | 6_1:+85008036 | None:intergenic |
| TTCTAAAGTGAGGCTAAACT+TGG | 0.414549 | 6_1:+85007878 | None:intergenic |
| AATATTTCAATTCAAGTGTT+CGG | 0.416069 | 6_1:-85007956 | Msa0895950:three_prime_UTR |
| CAATTCACTGATTCTTCCTT+AGG | 0.421153 | 6_1:-85008393 | Msa0895950:CDS |
| TCATGACATATTAAATCAAA+TGG | 0.444364 | 6_1:+85008896 | None:intergenic |
| GAAACTCTAGAAGAAATTAG+AGG | 0.445596 | 6_1:-85009025 | Msa0895950:five_prime_UTR |
| CTCTAGTATAGGTTTGGAAC+CGG | 0.452581 | 6_1:-85008613 | Msa0895950:five_prime_UTR |
| CTCCCAGATACCGAGTCTTA+AGG | 0.455660 | 6_1:-85008179 | Msa0895950:CDS |
| TTCCCTTTAATGTGCAAGAC+TGG | 0.460673 | 6_1:-85008575 | Msa0895950:five_prime_UTR |
| TAAAAGCATGCTAATGAGTC+AGG | 0.461690 | 6_1:-85008942 | Msa0895950:five_prime_UTR |
| CTAAGGAAGGGAGGTTGTTA+CGG | 0.463381 | 6_1:+85008721 | None:intergenic |
| ATATAACTCTAGTATAGGTT+TGG | 0.463604 | 6_1:-85008619 | Msa0895950:five_prime_UTR |
| AAGCTCATGAGATATTCATT+TGG | 0.468063 | 6_1:+85008357 | None:intergenic |
| GACAATGCTATTAGATTTGG+CGG | 0.473455 | 6_1:+85008998 | None:intergenic |
| TCACATGATTGCACAGCCGC+TGG | 0.474026 | 6_1:+85008104 | None:intergenic |
| CGAAGAAAATAAGAAAACTA+AGG | 0.478312 | 6_1:+85008704 | None:intergenic |
| AAAGAGTGTGTTGTAGAAAG+TGG | 0.482190 | 6_1:-85008456 | Msa0895950:CDS |
| CACTCTGGAATTCTCTCACT+TGG | 0.495114 | 6_1:+85008783 | None:intergenic |
| GTTTGAAATACTACATACAT+TGG | 0.495444 | 6_1:+85007900 | None:intergenic |
| CTCCTTAAGACTCGGTATCT+GGG | 0.500875 | 6_1:+85008177 | None:intergenic |
| GAAAATAAGAAAACTAAGGA+AGG | 0.502448 | 6_1:+85008708 | None:intergenic |
| TTACAGGAACTGCATGAGGC+TGG | 0.507773 | 6_1:-85008834 | Msa0895950:five_prime_UTR |
| ATTCTCTCACTTGGTAGTGA+TGG | 0.509094 | 6_1:+85008792 | None:intergenic |
| GGAAATAGATATGTATGATC+CGG | 0.525451 | 6_1:+85008594 | None:intergenic |
| TTAGGAAAATAAGCAAGAGT+TGG | 0.540555 | 6_1:-85008073 | Msa0895950:three_prime_UTR |
| AATGTATATAACTCTAGTAT+AGG | 0.542338 | 6_1:-85008624 | Msa0895950:five_prime_UTR |
| CACATGATTGCACAGCCGCT+GGG | 0.556205 | 6_1:+85008105 | None:intergenic |
| AAAATAAGAAAACTAAGGAA+GGG | 0.574343 | 6_1:+85008709 | None:intergenic |
| AAACTCTAGAAGAAATTAGA+GGG | 0.576458 | 6_1:-85009024 | Msa0895950:five_prime_UTR |
| TAGTCAAATGTTTGATTGCG+TGG | 0.579994 | 6_1:+85008430 | None:intergenic |
| GGAAATTACCTTCTAAAGTG+AGG | 0.597534 | 6_1:+85007868 | None:intergenic |
| ATAAGAAAACTAAGGAAGGG+AGG | 0.608718 | 6_1:+85008712 | None:intergenic |
| AAACTTACAGGAACTGCATG+AGG | 0.610717 | 6_1:-85008838 | Msa0895950:five_prime_UTR |
| AATCAAACATTTGACTAACA+TGG | 0.613840 | 6_1:-85008424 | Msa0895950:CDS |
| TTGTCCTACTCCTTAAGACT+CGG | 0.614325 | 6_1:+85008169 | None:intergenic |
| GATACCGAGTCTTAAGGAGT+AGG | 0.628061 | 6_1:-85008173 | Msa0895950:CDS |
| CAGGAACTGCATGAGGCTGG+AGG | 0.635729 | 6_1:-85008831 | Msa0895950:five_prime_UTR |
| TAATAGCATTGTCTGCATTG+CGG | 0.668493 | 6_1:-85008988 | Msa0895950:five_prime_UTR |
| CAAGTGAGAGAATTCCAGAG+TGG | 0.718056 | 6_1:-85008782 | Msa0895950:five_prime_UTR |
| CTTAAGACTCGGTATCTGGG+AGG | 0.734319 | 6_1:+85008180 | None:intergenic |
| TCTGTTGAAGAAAATCCCAG+CGG | 0.798953 | 6_1:-85008120 | Msa0895950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAGAATAATATTACATTA+TGG | - | chr6_1:85008933-85008952 | Msa0895950:five_prime_UTR | 10.0% |
| !! | ATTAGAATAATATTACATTA+TGG | - | chr6_1:85008933-85008952 | Msa0895950:five_prime_UTR | 10.0% |
| !! | CATATTAAATCAAATGGTTA+TGG | + | chr6_1:85007961-85007980 | None:intergenic | 20.0% |
| !! | TCATGACATATTAAATCAAA+TGG | + | chr6_1:85007967-85007986 | None:intergenic | 20.0% |
| !! | AAAATAAGAAAACTAAGGAA+GGG | + | chr6_1:85008154-85008173 | None:intergenic | 20.0% |
| !! | AATGTATATAACTCTAGTAT+AGG | - | chr6_1:85008236-85008255 | Msa0895950:intron | 20.0% |
| !!! | GAACTTTCATTTTAGAAAAT+TGG | - | chr6_1:85008862-85008881 | Msa0895950:five_prime_UTR | 20.0% |
| !! | AATATTTCAATTCAAGTGTT+CGG | - | chr6_1:85008904-85008923 | Msa0895950:five_prime_UTR | 20.0% |
| !!! | TTTTTCTCTTTTAATTGATG+TGG | + | chr6_1:85009016-85009035 | None:intergenic | 20.0% |
| !! | CATATTAAATCAAATGGTTA+TGG | + | chr6_1:85007961-85007980 | None:intergenic | 20.0% |
| !! | TCATGACATATTAAATCAAA+TGG | + | chr6_1:85007967-85007986 | None:intergenic | 20.0% |
| !! | AAAATAAGAAAACTAAGGAA+GGG | + | chr6_1:85008154-85008173 | None:intergenic | 20.0% |
| !! | AATGTATATAACTCTAGTAT+AGG | - | chr6_1:85008236-85008255 | Msa0895950:intron | 20.0% |
| !!! | GAACTTTCATTTTAGAAAAT+TGG | - | chr6_1:85008862-85008881 | Msa0895950:five_prime_UTR | 20.0% |
| !! | AATATTTCAATTCAAGTGTT+CGG | - | chr6_1:85008904-85008923 | Msa0895950:five_prime_UTR | 20.0% |
| !!! | TTTTTCTCTTTTAATTGATG+TGG | + | chr6_1:85009016-85009035 | None:intergenic | 20.0% |
| ! | TCTTATTGCTAAAAACTTAC+AGG | - | chr6_1:85008010-85008029 | Msa0895950:three_prime_UTR | 25.0% |
| ! | GAAAATAAGAAAACTAAGGA+AGG | + | chr6_1:85008155-85008174 | None:intergenic | 25.0% |
| ! | CGAAGAAAATAAGAAAACTA+AGG | + | chr6_1:85008159-85008178 | None:intergenic | 25.0% |
| !!! | TTTCTTATTTTCTTCGAAAG+TGG | - | chr6_1:85008163-85008182 | Msa0895950:CDS | 25.0% |
| ! | AACAGACTCTTAAAGAAAAA+GGG | + | chr6_1:85008202-85008221 | None:intergenic | 25.0% |
| ! | AAACAGACTCTTAAAGAAAA+AGG | + | chr6_1:85008203-85008222 | None:intergenic | 25.0% |
| ! | ATATAACTCTAGTATAGGTT+TGG | - | chr6_1:85008241-85008260 | Msa0895950:intron | 25.0% |
| !!! | AAGCACTTTTGAAAAATGAA+TGG | - | chr6_1:85008348-85008367 | Msa0895950:CDS | 25.0% |
| ! | AATCAAACATTTGACTAACA+TGG | - | chr6_1:85008436-85008455 | Msa0895950:CDS | 25.0% |
| ! | ACAATCAGTTATGAAATTAC+TGG | - | chr6_1:85008526-85008545 | Msa0895950:exon | 25.0% |
| ! | GATAGTAATTAACCATCTTT+CGG | + | chr6_1:85008827-85008846 | None:intergenic | 25.0% |
| !! | GTTTGAAATACTACATACAT+TGG | + | chr6_1:85008963-85008982 | None:intergenic | 25.0% |
| ! | TCTTATTGCTAAAAACTTAC+AGG | - | chr6_1:85008010-85008029 | Msa0895950:three_prime_UTR | 25.0% |
| ! | GAAAATAAGAAAACTAAGGA+AGG | + | chr6_1:85008155-85008174 | None:intergenic | 25.0% |
| ! | CGAAGAAAATAAGAAAACTA+AGG | + | chr6_1:85008159-85008178 | None:intergenic | 25.0% |
| !!! | TTTCTTATTTTCTTCGAAAG+TGG | - | chr6_1:85008163-85008182 | Msa0895950:CDS | 25.0% |
| ! | AACAGACTCTTAAAGAAAAA+GGG | + | chr6_1:85008202-85008221 | None:intergenic | 25.0% |
| ! | AAACAGACTCTTAAAGAAAA+AGG | + | chr6_1:85008203-85008222 | None:intergenic | 25.0% |
| ! | ATATAACTCTAGTATAGGTT+TGG | - | chr6_1:85008241-85008260 | Msa0895950:intron | 25.0% |
| !!! | AAGCACTTTTGAAAAATGAA+TGG | - | chr6_1:85008348-85008367 | Msa0895950:CDS | 25.0% |
| ! | AATCAAACATTTGACTAACA+TGG | - | chr6_1:85008436-85008455 | Msa0895950:CDS | 25.0% |
| ! | ACAATCAGTTATGAAATTAC+TGG | - | chr6_1:85008526-85008545 | Msa0895950:exon | 25.0% |
| ! | GATAGTAATTAACCATCTTT+CGG | + | chr6_1:85008827-85008846 | None:intergenic | 25.0% |
| !! | GTTTGAAATACTACATACAT+TGG | + | chr6_1:85008963-85008982 | None:intergenic | 25.0% |
| GGAAATAGATATGTATGATC+CGG | + | chr6_1:85008269-85008288 | None:intergenic | 30.0% | |
| ! | CCAGCATAGATTTCAATTTT+TGG | + | chr6_1:85008325-85008344 | None:intergenic | 30.0% |
| CCAAAAATTGAAATCTATGC+TGG | - | chr6_1:85008322-85008341 | Msa0895950:intron | 30.0% | |
| !! | TGGTTCTATATTTTTGCCTA+AGG | + | chr6_1:85008486-85008505 | None:intergenic | 30.0% |
| AAGCTCATGAGATATTCATT+TGG | + | chr6_1:85008506-85008525 | None:intergenic | 30.0% | |
| AATCATGTGAACTTCCATTT+AGG | - | chr6_1:85008769-85008788 | Msa0895950:five_prime_UTR | 30.0% | |
| !! | CTCTTGCTTATTTTCCTAAA+TGG | + | chr6_1:85008786-85008805 | None:intergenic | 30.0% |
| TTAGGAAAATAAGCAAGAGT+TGG | - | chr6_1:85008787-85008806 | Msa0895950:five_prime_UTR | 30.0% | |
| !!! | CATATTTTGATACCGAAAGA+TGG | - | chr6_1:85008812-85008831 | Msa0895950:five_prime_UTR | 30.0% |
| !! | CTCTAATTTCTTCTAGAGTT+TGG | + | chr6_1:85007837-85007856 | None:intergenic | 30.0% |
| GGAAATAGATATGTATGATC+CGG | + | chr6_1:85008269-85008288 | None:intergenic | 30.0% | |
| ! | CCAGCATAGATTTCAATTTT+TGG | + | chr6_1:85008325-85008344 | None:intergenic | 30.0% |
| CCAAAAATTGAAATCTATGC+TGG | - | chr6_1:85008322-85008341 | Msa0895950:intron | 30.0% | |
| !! | TGGTTCTATATTTTTGCCTA+AGG | + | chr6_1:85008486-85008505 | None:intergenic | 30.0% |
| AAGCTCATGAGATATTCATT+TGG | + | chr6_1:85008506-85008525 | None:intergenic | 30.0% | |
| AATCATGTGAACTTCCATTT+AGG | - | chr6_1:85008769-85008788 | Msa0895950:five_prime_UTR | 30.0% | |
| !! | CTCTTGCTTATTTTCCTAAA+TGG | + | chr6_1:85008786-85008805 | None:intergenic | 30.0% |
| TTAGGAAAATAAGCAAGAGT+TGG | - | chr6_1:85008787-85008806 | Msa0895950:five_prime_UTR | 30.0% | |
| !!! | CATATTTTGATACCGAAAGA+TGG | - | chr6_1:85008812-85008831 | Msa0895950:five_prime_UTR | 30.0% |
| GACAATGCTATTAGATTTGG+CGG | + | chr6_1:85007865-85007884 | None:intergenic | 35.0% | |
| GCAGACAATGCTATTAGATT+TGG | + | chr6_1:85007868-85007887 | None:intergenic | 35.0% | |
| TAATAGCATTGTCTGCATTG+CGG | - | chr6_1:85007872-85007891 | Msa0895950:three_prime_UTR | 35.0% | |
| ! | TAAAAGCATGCTAATGAGTC+AGG | - | chr6_1:85007918-85007937 | Msa0895950:three_prime_UTR | 35.0% |
| ATAAGAAAACTAAGGAAGGG+AGG | + | chr6_1:85008151-85008170 | None:intergenic | 35.0% | |
| TACCAGTCTTGCACATTAAA+GGG | + | chr6_1:85008290-85008309 | None:intergenic | 35.0% | |
| ! | AATGGATTCATGCTGAAGTT+AGG | - | chr6_1:85008366-85008385 | Msa0895950:CDS | 35.0% |
| ! | AAAGAGTGTGTTGTAGAAAG+TGG | - | chr6_1:85008404-85008423 | Msa0895950:CDS | 35.0% |
| TAGTCAAATGTTTGATTGCG+TGG | + | chr6_1:85008433-85008452 | None:intergenic | 35.0% | |
| !! | CAATTCACTGATTCTTCCTT+AGG | - | chr6_1:85008467-85008486 | Msa0895950:CDS | 35.0% |
| !! | TTCTAAAGTGAGGCTAAACT+TGG | + | chr6_1:85008985-85009004 | None:intergenic | 35.0% |
| AAGTTTAGCCTCACTTTAGA+AGG | - | chr6_1:85008984-85009003 | Msa0895950:five_prime_UTR | 35.0% | |
| !! | GGAAATTACCTTCTAAAGTG+AGG | + | chr6_1:85008995-85009014 | None:intergenic | 35.0% |
| GACAATGCTATTAGATTTGG+CGG | + | chr6_1:85007865-85007884 | None:intergenic | 35.0% | |
| GCAGACAATGCTATTAGATT+TGG | + | chr6_1:85007868-85007887 | None:intergenic | 35.0% | |
| TAATAGCATTGTCTGCATTG+CGG | - | chr6_1:85007872-85007891 | Msa0895950:three_prime_UTR | 35.0% | |
| ! | TAAAAGCATGCTAATGAGTC+AGG | - | chr6_1:85007918-85007937 | Msa0895950:three_prime_UTR | 35.0% |
| ATAAGAAAACTAAGGAAGGG+AGG | + | chr6_1:85008151-85008170 | None:intergenic | 35.0% | |
| TACCAGTCTTGCACATTAAA+GGG | + | chr6_1:85008290-85008309 | None:intergenic | 35.0% | |
| ! | AATGGATTCATGCTGAAGTT+AGG | - | chr6_1:85008366-85008385 | Msa0895950:CDS | 35.0% |
| ! | AAAGAGTGTGTTGTAGAAAG+TGG | - | chr6_1:85008404-85008423 | Msa0895950:CDS | 35.0% |
| TAGTCAAATGTTTGATTGCG+TGG | + | chr6_1:85008433-85008452 | None:intergenic | 35.0% | |
| !! | CAATTCACTGATTCTTCCTT+AGG | - | chr6_1:85008467-85008486 | Msa0895950:CDS | 35.0% |
| !! | TTCTAAAGTGAGGCTAAACT+TGG | + | chr6_1:85008985-85009004 | None:intergenic | 35.0% |
| AAGTTTAGCCTCACTTTAGA+AGG | - | chr6_1:85008984-85009003 | Msa0895950:five_prime_UTR | 35.0% | |
| !! | GGAAATTACCTTCTAAAGTG+AGG | + | chr6_1:85008995-85009014 | None:intergenic | 35.0% |
| AAACTTACAGGAACTGCATG+AGG | - | chr6_1:85008022-85008041 | Msa0895950:three_prime_UTR | 40.0% | |
| !! | ATTCTCTCACTTGGTAGTGA+TGG | + | chr6_1:85008071-85008090 | None:intergenic | 40.0% |
| ! | CTCTAGTATAGGTTTGGAAC+CGG | - | chr6_1:85008247-85008266 | Msa0895950:intron | 40.0% |
| TTCCCTTTAATGTGCAAGAC+TGG | - | chr6_1:85008285-85008304 | Msa0895950:intron | 40.0% | |
| GTACCAGTCTTGCACATTAA+AGG | + | chr6_1:85008291-85008310 | None:intergenic | 40.0% | |
| ! | CATGCTGAAGTTAGGTTTTG+CGG | - | chr6_1:85008374-85008393 | Msa0895950:CDS | 40.0% |
| ! | TGAAGTTAGGTTTTGCGGTT+GGG | - | chr6_1:85008379-85008398 | Msa0895950:CDS | 40.0% |
| TTGTCCTACTCCTTAAGACT+CGG | + | chr6_1:85008694-85008713 | None:intergenic | 40.0% | |
| TCTGTTGAAGAAAATCCCAG+CGG | - | chr6_1:85008740-85008759 | Msa0895950:five_prime_UTR | 40.0% | |
| AAACTTACAGGAACTGCATG+AGG | - | chr6_1:85008022-85008041 | Msa0895950:three_prime_UTR | 40.0% | |
| !! | ATTCTCTCACTTGGTAGTGA+TGG | + | chr6_1:85008071-85008090 | None:intergenic | 40.0% |
| ! | CTCTAGTATAGGTTTGGAAC+CGG | - | chr6_1:85008247-85008266 | Msa0895950:intron | 40.0% |
| TTCCCTTTAATGTGCAAGAC+TGG | - | chr6_1:85008285-85008304 | Msa0895950:intron | 40.0% | |
| GTACCAGTCTTGCACATTAA+AGG | + | chr6_1:85008291-85008310 | None:intergenic | 40.0% | |
| ! | CATGCTGAAGTTAGGTTTTG+CGG | - | chr6_1:85008374-85008393 | Msa0895950:CDS | 40.0% |
| ! | TGAAGTTAGGTTTTGCGGTT+GGG | - | chr6_1:85008379-85008398 | Msa0895950:CDS | 40.0% |
| TTGTCCTACTCCTTAAGACT+CGG | + | chr6_1:85008694-85008713 | None:intergenic | 40.0% | |
| TCTGTTGAAGAAAATCCCAG+CGG | - | chr6_1:85008740-85008759 | Msa0895950:five_prime_UTR | 40.0% | |
| !! | CACTCTGGAATTCTCTCACT+TGG | + | chr6_1:85008080-85008099 | None:intergenic | 45.0% |
| CAAGTGAGAGAATTCCAGAG+TGG | - | chr6_1:85008078-85008097 | Msa0895950:three_prime_UTR | 45.0% | |
| ! | GTTTTGTGCTCAAACCACTC+TGG | + | chr6_1:85008095-85008114 | None:intergenic | 45.0% |
| CTAAGGAAGGGAGGTTGTTA+CGG | + | chr6_1:85008142-85008161 | None:intergenic | 45.0% | |
| ! | CTGAAGTTAGGTTTTGCGGT+TGG | - | chr6_1:85008378-85008397 | Msa0895950:CDS | 45.0% |
| ! | CTCCTTAAGACTCGGTATCT+GGG | + | chr6_1:85008686-85008705 | None:intergenic | 45.0% |
| ! | ACTCCTTAAGACTCGGTATC+TGG | + | chr6_1:85008687-85008706 | None:intergenic | 45.0% |
| GATACCGAGTCTTAAGGAGT+AGG | - | chr6_1:85008687-85008706 | Msa0895950:five_prime_UTR | 45.0% | |
| !! | CACTCTGGAATTCTCTCACT+TGG | + | chr6_1:85008080-85008099 | None:intergenic | 45.0% |
| CAAGTGAGAGAATTCCAGAG+TGG | - | chr6_1:85008078-85008097 | Msa0895950:three_prime_UTR | 45.0% | |
| ! | GTTTTGTGCTCAAACCACTC+TGG | + | chr6_1:85008095-85008114 | None:intergenic | 45.0% |
| CTAAGGAAGGGAGGTTGTTA+CGG | + | chr6_1:85008142-85008161 | None:intergenic | 45.0% | |
| ! | CTGAAGTTAGGTTTTGCGGT+TGG | - | chr6_1:85008378-85008397 | Msa0895950:CDS | 45.0% |
| ! | CTCCTTAAGACTCGGTATCT+GGG | + | chr6_1:85008686-85008705 | None:intergenic | 45.0% |
| ! | ACTCCTTAAGACTCGGTATC+TGG | + | chr6_1:85008687-85008706 | None:intergenic | 45.0% |
| GATACCGAGTCTTAAGGAGT+AGG | - | chr6_1:85008687-85008706 | Msa0895950:five_prime_UTR | 45.0% | |
| TTACAGGAACTGCATGAGGC+TGG | - | chr6_1:85008026-85008045 | Msa0895950:three_prime_UTR | 50.0% | |
| ! | CTTAAGACTCGGTATCTGGG+AGG | + | chr6_1:85008683-85008702 | None:intergenic | 50.0% |
| CTCCCAGATACCGAGTCTTA+AGG | - | chr6_1:85008681-85008700 | Msa0895950:five_prime_UTR | 50.0% | |
| TTACAGGAACTGCATGAGGC+TGG | - | chr6_1:85008026-85008045 | Msa0895950:three_prime_UTR | 50.0% | |
| ! | CTTAAGACTCGGTATCTGGG+AGG | + | chr6_1:85008683-85008702 | None:intergenic | 50.0% |
| CTCCCAGATACCGAGTCTTA+AGG | - | chr6_1:85008681-85008700 | Msa0895950:five_prime_UTR | 50.0% | |
| CACATGATTGCACAGCCGCT+GGG | + | chr6_1:85008758-85008777 | None:intergenic | 55.0% | |
| TCACATGATTGCACAGCCGC+TGG | + | chr6_1:85008759-85008778 | None:intergenic | 55.0% | |
| CACATGATTGCACAGCCGCT+GGG | + | chr6_1:85008758-85008777 | None:intergenic | 55.0% | |
| TCACATGATTGCACAGCCGC+TGG | + | chr6_1:85008759-85008778 | None:intergenic | 55.0% | |
| CAGGAACTGCATGAGGCTGG+AGG | - | chr6_1:85008029-85008048 | Msa0895950:three_prime_UTR | 60.0% | |
| CAGGAACTGCATGAGGCTGG+AGG | - | chr6_1:85008029-85008048 | Msa0895950:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 85007837 | 85009045 | 85007837 | ID=Msa0895950;Name=Msa0895950 |
| chr6_1 | mRNA | 85007837 | 85009045 | 85007837 | ID=Msa0895950-mRNA-1;Parent=Msa0895950;Name=Msa0895950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=501|1|1|1|1|1|2|267|110 |
| chr6_1 | exon | 85007837 | 85008226 | 85007837 | ID=Msa0895950-mRNA-1:exon:14352;Parent=Msa0895950-mRNA-1 |
| chr6_1 | exon | 85008335 | 85009045 | 85008335 | ID=Msa0895950-mRNA-1:exon:14351;Parent=Msa0895950-mRNA-1 |
| chr6_1 | five_prime_UTR | 85008545 | 85009045 | 85008545 | ID=Msa0895950-mRNA-1:five_prime_utr;Parent=Msa0895950-mRNA-1 |
| chr6_1 | CDS | 85008335 | 85008544 | 85008335 | ID=Msa0895950-mRNA-1:cds;Parent=Msa0895950-mRNA-1 |
| chr6_1 | CDS | 85008104 | 85008226 | 85008104 | ID=Msa0895950-mRNA-1:cds;Parent=Msa0895950-mRNA-1 |
| chr6_1 | three_prime_UTR | 85007837 | 85008103 | 85007837 | ID=Msa0895950-mRNA-1:three_prime_utr;Parent=Msa0895950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
