Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181360 | sp|B9DFR3|PAE9_ARATH | 55.285 | 246 | 71 | 3 | 17 | 223 | 12 | 257 | 3.08e-85 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181360 | A0A072VPF8 | 79.693 | 261 | 15 | 3 | 1 | 223 | 1 | 261 | 1.28e-140 | 408 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000550 | Msa0181360 | -0.802963 | 4.372119e-49 | -8.615850e-47 |
| Msa0027390 | Msa0181360 | 0.813724 | 2.214280e-51 | -8.615850e-47 |
| Msa0048000 | Msa0181360 | 0.830771 | 2.433899e-55 | -8.615850e-47 |
| Msa0064290 | Msa0181360 | 0.801113 | 1.049424e-48 | -8.615850e-47 |
| Msa0122590 | Msa0181360 | 0.824427 | 8.120572e-54 | -8.615850e-47 |
| Msa0122810 | Msa0181360 | 0.810120 | 1.350008e-50 | -8.615850e-47 |
| Msa0143380 | Msa0181360 | 0.815322 | 9.811196e-52 | -8.615850e-47 |
| Msa0165300 | Msa0181360 | 0.817648 | 2.957344e-52 | -8.615850e-47 |
| Msa0165550 | Msa0181360 | 0.800405 | 1.463471e-48 | -8.615850e-47 |
| Msa0170140 | Msa0181360 | 0.808520 | 2.975285e-50 | -8.615850e-47 |
| Msa0181360 | Msa0185590 | 0.804628 | 1.971835e-49 | -8.615850e-47 |
| Msa0181360 | Msa0191250 | 0.805576 | 1.248980e-49 | -8.615850e-47 |
| Msa0181360 | Msa0205850 | 0.815650 | 8.291826e-52 | -8.615850e-47 |
| Msa0181360 | Msa0220580 | 0.800483 | 1.410926e-48 | -8.615850e-47 |
| Msa0181360 | Msa0227470 | 0.801531 | 8.616090e-49 | -8.615850e-47 |
| Msa0181360 | Msa0243710 | 0.812273 | 4.606004e-51 | -8.615850e-47 |
| Msa0181360 | Msa0258760 | 0.824004 | 1.020556e-53 | -8.615850e-47 |
| Msa0181360 | Msa0260810 | 0.822543 | 2.238954e-53 | -8.615850e-47 |
| Msa0181360 | Msa0262510 | 0.801565 | 8.480358e-49 | -8.615850e-47 |
| Msa0181360 | Msa0264780 | 0.821636 | 3.633283e-53 | -8.615850e-47 |
| Msa0181360 | Msa0266000 | -0.800559 | 1.361968e-48 | -8.615850e-47 |
| Msa0181360 | Msa0276920 | 0.801955 | 7.051825e-49 | -8.615850e-47 |
| Msa0181360 | Msa0287310 | 0.802613 | 5.163303e-49 | -8.615850e-47 |
| Msa0181360 | Msa0299730 | 0.808415 | 3.131742e-50 | -8.615850e-47 |
| Msa0181360 | Msa0323080 | 0.822423 | 2.388385e-53 | -8.615850e-47 |
| Msa0181360 | Msa0325850 | 0.801435 | 9.015997e-49 | -8.615850e-47 |
| Msa0181360 | Msa0332000 | 0.801027 | 1.092933e-48 | -8.615850e-47 |
| Msa0181360 | Msa0333920 | 0.813726 | 2.211857e-51 | -8.615850e-47 |
| Msa0181360 | Msa0333930 | 0.802929 | 4.442578e-49 | -8.615850e-47 |
| Msa0181360 | Msa0335040 | 0.825302 | 5.047555e-54 | -8.615850e-47 |
| Msa0181360 | Msa0356890 | -0.800607 | 1.331090e-48 | -8.615850e-47 |
| Msa0181360 | Msa0376590 | 0.804757 | 1.853280e-49 | -8.615850e-47 |
| Msa0181360 | Msa0415810 | 0.801776 | 7.676418e-49 | -8.615850e-47 |
| Msa0181360 | Msa0417880 | 0.802322 | 5.926343e-49 | -8.615850e-47 |
| Msa0181360 | Msa0436370 | 0.829710 | 4.421200e-55 | -8.615850e-47 |
| Msa0181360 | Msa0452960 | 0.800293 | 1.542307e-48 | -8.615850e-47 |
| Msa0181360 | Msa0484780 | 0.855955 | 4.456047e-62 | -8.615850e-47 |
| Msa0181360 | Msa0505770 | 0.817047 | 4.038156e-52 | -8.615850e-47 |
| Msa0181360 | Msa0506890 | 0.814230 | 1.712871e-51 | -8.615850e-47 |
| Msa0181360 | Msa0509610 | 0.805969 | 1.032676e-49 | -8.615850e-47 |
| Msa0181360 | Msa0512870 | 0.809704 | 1.658642e-50 | -8.615850e-47 |
| Msa0181360 | Msa0516370 | 0.808912 | 2.453112e-50 | -8.615850e-47 |
| Msa0181360 | Msa0523460 | 0.800052 | 1.727281e-48 | -8.615850e-47 |
| Msa0181360 | Msa0534590 | 0.824238 | 8.992240e-54 | -8.615850e-47 |
| Msa0181360 | Msa0563840 | 0.808127 | 3.608477e-50 | -8.615850e-47 |
| Msa0181360 | Msa0572420 | 0.828846 | 7.162982e-55 | -8.615850e-47 |
| Msa0181360 | Msa0572480 | 0.810475 | 1.131681e-50 | -8.615850e-47 |
| Msa0181360 | Msa0626280 | 0.812131 | 4.948053e-51 | -8.615850e-47 |
| Msa0181360 | Msa0657970 | 0.818968 | 1.485613e-52 | -8.615850e-47 |
| Msa0181360 | Msa0669340 | 0.802153 | 6.421440e-49 | -8.615850e-47 |
| Msa0181360 | Msa0682550 | 0.833454 | 5.282892e-56 | -8.615850e-47 |
| Msa0181360 | Msa0684500 | 0.809526 | 1.811566e-50 | -8.615850e-47 |
| Msa0181360 | Msa0691050 | 0.809988 | 1.441371e-50 | -8.615850e-47 |
| Msa0181360 | Msa0693380 | 0.825817 | 3.810514e-54 | -8.615850e-47 |
| Msa0181360 | Msa0704600 | 0.805486 | 1.304490e-49 | -8.615850e-47 |
| Msa0181360 | Msa0754720 | -0.807535 | 4.821294e-50 | -8.615850e-47 |
| Msa0181360 | Msa0756630 | -0.822485 | 2.309655e-53 | -8.615850e-47 |
| Msa0181360 | Msa0757080 | 0.818286 | 2.121713e-52 | -8.615850e-47 |
| Msa0181360 | Msa0816710 | 0.818456 | 1.942255e-52 | -8.615850e-47 |
| Msa0181360 | Msa0824660 | 0.812401 | 4.319827e-51 | -8.615850e-47 |
| Msa0181360 | Msa0829620 | 0.809373 | 1.954138e-50 | -8.615850e-47 |
| Msa0181360 | Msa0863930 | 0.807526 | 4.842879e-50 | -8.615850e-47 |
| Msa0181360 | Msa0867890 | 0.802980 | 4.336031e-49 | -8.615850e-47 |
| Msa0181360 | Msa0870530 | 0.814079 | 1.849495e-51 | -8.615850e-47 |
| Msa0181360 | Msa0882510 | 0.806183 | 9.308930e-50 | -8.615850e-47 |
| Msa0181360 | Msa0891040 | 0.807058 | 6.083491e-50 | -8.615850e-47 |
| Msa0181360 | Msa0893810 | 0.809564 | 1.777710e-50 | -8.615850e-47 |
| Msa0181360 | Msa0903700 | 0.821567 | 3.769431e-53 | -8.615850e-47 |
| Msa0181360 | Msa0908050 | 0.830436 | 2.940127e-55 | -8.615850e-47 |
| Msa0181360 | Msa0908170 | 0.814805 | 1.277692e-51 | -8.615850e-47 |
| Msa0181360 | Msa0933230 | 0.805966 | 1.033997e-49 | -8.615850e-47 |
| Msa0181360 | Msa0954130 | 0.802673 | 5.018337e-49 | -8.615850e-47 |
| Msa0181360 | Msa0954550 | 0.806244 | 9.037777e-50 | -8.615850e-47 |
| Msa0181360 | Msa0973150 | 0.812371 | 4.385432e-51 | -8.615850e-47 |
| Msa0181360 | Msa1068200 | -0.808322 | 3.279276e-50 | -8.615850e-47 |
| Msa0181360 | Msa1080160 | 0.811638 | 6.333962e-51 | -8.615850e-47 |
| Msa0181360 | Msa1082500 | 0.841926 | 3.533393e-58 | -8.615850e-47 |
| Msa0181360 | Msa1085300 | 0.801606 | 8.317354e-49 | -8.615850e-47 |
| Msa0181360 | Msa1087980 | 0.806090 | 9.740046e-50 | -8.615850e-47 |
| Msa0181360 | Msa1098400 | 0.815763 | 7.826723e-52 | -8.615850e-47 |
| Msa0181360 | Msa1102770 | 0.808590 | 2.873846e-50 | -8.615850e-47 |
| Msa0181360 | Msa1124310 | 0.817388 | 3.383559e-52 | -8.615850e-47 |
| Msa0181360 | Msa1130270 | -0.801483 | 8.816069e-49 | -8.615850e-47 |
| Msa0181360 | Msa1140690 | 0.802905 | 4.494598e-49 | -8.615850e-47 |
| Msa0181360 | Msa1152990 | 0.804667 | 1.935620e-49 | -8.615850e-47 |
| Msa0181360 | Msa1170280 | 0.801399 | 9.172427e-49 | -8.615850e-47 |
| Msa0181360 | Msa1172670 | 0.825239 | 5.224850e-54 | -8.615850e-47 |
| Msa0181360 | Msa1214890 | 0.804942 | 1.695629e-49 | -8.615850e-47 |
| Msa0181360 | Msa1218480 | 0.825021 | 5.881493e-54 | -8.615850e-47 |
| Msa0181360 | Msa1240310 | 0.802713 | 4.922444e-49 | -8.615850e-47 |
| Msa0181360 | Msa1283860 | 0.805584 | 1.244229e-49 | -8.615850e-47 |
| Msa0181360 | Msa1329670 | 0.804390 | 2.210849e-49 | -8.615850e-47 |
| Msa0181360 | Msa1331910 | 0.804356 | 2.247323e-49 | -8.615850e-47 |
| Msa0181360 | Msa1340810 | 0.806789 | 6.936359e-50 | -8.615850e-47 |
| Msa0181360 | Msa1346370 | 0.807729 | 4.384181e-50 | -8.615850e-47 |
| Msa0181360 | Msa1379850 | 0.830841 | 2.339646e-55 | -8.615850e-47 |
| Msa0181360 | Msa1404540 | 0.825148 | 5.488951e-54 | -8.615850e-47 |
| Msa0181360 | Msa1410210 | 0.809060 | 2.280011e-50 | -8.615850e-47 |
| Msa0181360 | Msa1415940 | 0.812674 | 3.763678e-51 | -8.615850e-47 |
| Msa0181360 | Msa1427060 | 0.814073 | 1.855266e-51 | -8.615850e-47 |
| Msa0181360 | Msa1431060 | 0.820328 | 7.269389e-53 | -8.615850e-47 |
| Msa0181360 | Msa1457430 | 0.804640 | 1.960734e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181360 | MtrunA17_Chr1g0203101 | 79.693 | 261 | 15 | 3 | 1 | 223 | 1 | 261 | 7.46e-144 | 407 |
| Msa0181360 | MtrunA17_Chr1g0203121 | 79.693 | 261 | 15 | 3 | 1 | 223 | 1 | 261 | 2.08e-143 | 406 |
| Msa0181360 | MtrunA17_Chr7g0238491 | 59.494 | 158 | 64 | 0 | 48 | 205 | 86 | 243 | 2.03e-62 | 200 |
| Msa0181360 | MtrunA17_Chr7g0270931 | 58.710 | 155 | 62 | 1 | 49 | 203 | 82 | 234 | 5.69e-62 | 200 |
| Msa0181360 | MtrunA17_Chr1g0193381 | 56.962 | 158 | 66 | 1 | 48 | 205 | 82 | 237 | 2.64e-60 | 194 |
| Msa0181360 | MtrunA17_Chr5g0408881 | 48.677 | 189 | 79 | 1 | 48 | 218 | 58 | 246 | 2.84e-60 | 195 |
| Msa0181360 | MtrunA17_Chr7g0271231 | 51.872 | 187 | 69 | 2 | 36 | 203 | 54 | 238 | 8.83e-60 | 193 |
| Msa0181360 | MtrunA17_Chr4g0069571 | 49.198 | 187 | 74 | 2 | 36 | 203 | 56 | 240 | 4.92e-59 | 191 |
| Msa0181360 | MtrunA17_Chr1g0193761 | 51.064 | 188 | 72 | 3 | 48 | 217 | 69 | 254 | 2.77e-58 | 189 |
| Msa0181360 | MtrunA17_Chr5g0418101 | 46.277 | 188 | 83 | 1 | 48 | 217 | 71 | 258 | 1.22e-57 | 187 |
| Msa0181360 | MtrunA17_Chr8g0369651 | 46.032 | 189 | 84 | 1 | 48 | 218 | 57 | 245 | 2.72e-55 | 181 |
| Msa0181360 | MtrunA17_Chr8g0369681 | 45.161 | 186 | 84 | 1 | 51 | 218 | 59 | 244 | 8.27e-54 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181360 | AT5G23870.1 | 55.285 | 246 | 71 | 3 | 17 | 223 | 12 | 257 | 1.65e-86 | 262 |
| Msa0181360 | AT5G23870.4 | 55.285 | 246 | 71 | 3 | 17 | 223 | 12 | 257 | 1.65e-86 | 262 |
| Msa0181360 | AT5G23870.2 | 55.285 | 246 | 71 | 3 | 17 | 223 | 12 | 257 | 2.48e-86 | 262 |
| Msa0181360 | AT5G23870.3 | 55.285 | 246 | 71 | 3 | 17 | 223 | 12 | 257 | 3.13e-86 | 262 |
| Msa0181360 | AT2G46930.1 | 46.222 | 225 | 86 | 3 | 29 | 220 | 44 | 266 | 3.06e-63 | 202 |
| Msa0181360 | AT4G19420.3 | 43.644 | 236 | 96 | 2 | 20 | 218 | 7 | 242 | 1.63e-61 | 194 |
| Msa0181360 | AT1G57590.1 | 57.692 | 156 | 64 | 1 | 48 | 203 | 109 | 262 | 6.91e-61 | 197 |
| Msa0181360 | AT3G05910.2 | 50.000 | 194 | 77 | 2 | 28 | 203 | 43 | 234 | 6.98e-61 | 193 |
| Msa0181360 | AT3G62060.2 | 48.663 | 187 | 80 | 2 | 48 | 220 | 84 | 268 | 1.84e-60 | 196 |
| Msa0181360 | AT3G62060.1 | 48.663 | 187 | 80 | 2 | 48 | 220 | 84 | 268 | 2.39e-60 | 195 |
| Msa0181360 | AT4G19410.1 | 47.872 | 188 | 80 | 1 | 48 | 217 | 53 | 240 | 2.64e-60 | 194 |
| Msa0181360 | AT4G19420.1 | 43.443 | 244 | 97 | 3 | 20 | 222 | 7 | 250 | 9.76e-60 | 193 |
| Msa0181360 | AT4G19420.2 | 43.443 | 244 | 97 | 3 | 20 | 222 | 7 | 250 | 9.76e-60 | 193 |
| Msa0181360 | AT5G45280.1 | 45.596 | 193 | 85 | 2 | 49 | 223 | 54 | 244 | 9.83e-60 | 192 |
| Msa0181360 | AT4G19420.4 | 43.443 | 244 | 97 | 3 | 20 | 222 | 7 | 250 | 1.41e-59 | 193 |
| Msa0181360 | AT5G45280.2 | 45.596 | 193 | 85 | 2 | 49 | 223 | 54 | 244 | 1.42e-59 | 192 |
| Msa0181360 | AT3G05910.1 | 58.065 | 155 | 63 | 1 | 49 | 203 | 82 | 234 | 1.93e-59 | 192 |
| Msa0181360 | AT4G19410.2 | 47.872 | 188 | 80 | 1 | 48 | 217 | 53 | 240 | 2.17e-59 | 195 |
| Msa0181360 | AT3G09410.3 | 54.140 | 157 | 69 | 2 | 49 | 203 | 91 | 246 | 9.30e-58 | 187 |
| Msa0181360 | AT5G26670.1 | 56.774 | 155 | 65 | 1 | 49 | 203 | 83 | 235 | 3.45e-57 | 187 |
| Msa0181360 | AT3G09410.1 | 54.140 | 157 | 69 | 2 | 49 | 203 | 91 | 246 | 3.79e-57 | 187 |
| Msa0181360 | AT3G09405.1 | 52.229 | 157 | 72 | 2 | 49 | 203 | 81 | 236 | 1.19e-52 | 175 |
| Msa0181360 | AT1G09550.1 | 44.385 | 187 | 83 | 2 | 36 | 203 | 40 | 224 | 5.96e-52 | 172 |
| Msa0181360 | AT3G09405.2 | 52.713 | 129 | 58 | 2 | 77 | 203 | 2 | 129 | 2.00e-42 | 145 |
| Msa0181360 | AT5G26670.3 | 57.983 | 119 | 48 | 1 | 85 | 203 | 1 | 117 | 2.03e-39 | 137 |
| Msa0181360 | AT5G26670.2 | 57.983 | 119 | 48 | 1 | 85 | 203 | 1 | 117 | 2.03e-39 | 137 |
| Msa0181360 | AT5G26670.4 | 57.983 | 119 | 48 | 1 | 85 | 203 | 1 | 117 | 2.03e-39 | 137 |
Find 53 sgRNAs with CRISPR-Local
Find 488 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGTTTAGGCTTTGCTTTC+AGG | 0.097527 | 1_4:+69555183 | Msa0181360:intron |
| ACCCTTGAAGTTCTCATATT+TGG | 0.163453 | 1_4:-69551244 | None:intergenic |
| ACTTCAAAGGGCAAAAGATT+TGG | 0.251875 | 1_4:+69555018 | Msa0181360:CDS |
| TGTGATGGAGCTTCATTTAC+TGG | 0.267705 | 1_4:+69554255 | Msa0181360:CDS |
| CGTGCCTTTCCTAAACCTTT+TGG | 0.290608 | 1_4:-69555065 | None:intergenic |
| CTTCAAAGGGCAAAAGATTT+GGG | 0.334778 | 1_4:+69555019 | Msa0181360:CDS |
| GGAAACGGAGTGTTCAATAA+TGG | 0.341409 | 1_4:+69554276 | Msa0181360:CDS |
| TTGCTTTCAGGCTGCTCAGC+AGG | 0.346281 | 1_4:+69555195 | Msa0181360:CDS |
| TGGTAGAAGGTCGGCAATAA+TGG | 0.349393 | 1_4:-69555045 | None:intergenic |
| GAAACGGAGTGTTCAATAAT+GGG | 0.368176 | 1_4:+69554277 | Msa0181360:CDS |
| TCATGGAAACATACCAGGTT+TGG | 0.378261 | 1_4:-69556265 | None:intergenic |
| GACCTTCTACCAAAAGGTTT+AGG | 0.399324 | 1_4:+69555056 | Msa0181360:CDS |
| TTGGACCTGGTGAAGACAAT+TGG | 0.409910 | 1_4:+69547247 | Msa0181360:CDS |
| CAATTGGCTTCTACAATTTG+AGG | 0.416598 | 1_4:+69547263 | Msa0181360:CDS |
| CTCACAAGAACATAAGCTTA+TGG | 0.430132 | 1_4:+69546796 | Msa0181360:CDS |
| AGCATTGGTTGGCAAATACT+TGG | 0.436879 | 1_4:-69555253 | None:intergenic |
| TATTGATTTACCTGGATTAA+CGG | 0.447581 | 1_4:-69551286 | None:intergenic |
| GGAGCTTCATTTACTGGAAA+CGG | 0.448138 | 1_4:+69554261 | Msa0181360:CDS |
| CAACAAGGCTTTACTTCAAA+GGG | 0.455205 | 1_4:+69555006 | Msa0181360:CDS |
| CAAGCATTTAACACTAGCAT+TGG | 0.472012 | 1_4:-69555268 | None:intergenic |
| CATTTAACACTAGCATTGGT+TGG | 0.475055 | 1_4:-69555264 | None:intergenic |
| TATGGTACTTGCCAGGGAGG+TGG | 0.477512 | 1_4:+69551153 | Msa0181360:intron |
| ACAACAAGGCTTTACTTCAA+AGG | 0.493096 | 1_4:+69555005 | Msa0181360:CDS |
| CTTTCAGGCTGCTCAGCAGG+AGG | 0.503743 | 1_4:+69555198 | Msa0181360:CDS |
| GACCAAATATGAGAACTTCA+AGG | 0.504679 | 1_4:+69551242 | Msa0181360:CDS |
| GTTAAATGCTTGAGTGATGC+AGG | 0.505103 | 1_4:+69555279 | Msa0181360:CDS |
| ATTGCCGACCTTCTACCAAA+AGG | 0.513583 | 1_4:+69555050 | Msa0181360:CDS |
| TGGAGAGAGCACAAACCCGC+AGG | 0.516921 | 1_4:+69551202 | Msa0181360:CDS |
| CAATGACTTGAAATCATGCT+TGG | 0.518177 | 1_4:+69551182 | Msa0181360:CDS |
| AACAATGCTACCGTTAATCC+AGG | 0.520859 | 1_4:+69551276 | Msa0181360:CDS |
| ATCTAATCACGGTGGTGTCA+TGG | 0.522553 | 1_4:+69546765 | Msa0181360:CDS |
| GTAATTTGTTGAACCCCTGC+GGG | 0.527566 | 1_4:-69551217 | None:intergenic |
| AGTCTTTAACATACCCATCA+AGG | 0.547152 | 1_4:-69555308 | None:intergenic |
| CGCATTATTATATCTAATCA+CGG | 0.552811 | 1_4:+69546754 | Msa0181360:CDS |
| TGTAATTTGTTGAACCCCTG+CGG | 0.557536 | 1_4:-69551218 | None:intergenic |
| AGAAGCCAATTGTCTTCACC+AGG | 0.561394 | 1_4:-69547252 | None:intergenic |
| GGAGAGAGCACAAACCCGCA+GGG | 0.583522 | 1_4:+69551203 | Msa0181360:CDS |
| ACCAAATATGAGAACTTCAA+GGG | 0.586887 | 1_4:+69551243 | Msa0181360:CDS |
| TTGCATAGAGGATTTGGACC+TGG | 0.587842 | 1_4:+69547234 | Msa0181360:intron |
| AGGTTTAGGAAAGGCACGCA+AGG | 0.588900 | 1_4:+69555070 | Msa0181360:CDS |
| GTACTTGCCAGGGAGGTGGT+TGG | 0.599266 | 1_4:+69551157 | Msa0181360:intron |
| GATGTCTTCTTATCCAAACC+TGG | 0.603820 | 1_4:+69556252 | Msa0181360:CDS |
| TCTACCAAAAGGTTTAGGAA+AGG | 0.639124 | 1_4:+69555061 | Msa0181360:CDS |
| TGGATAAGAAGACATCGCAC+TGG | 0.641301 | 1_4:-69556245 | None:intergenic |
| GAAGTTGTCACAGTGGTGAA+AGG | 0.641338 | 1_4:-69555229 | None:intergenic |
| TGTTACAATGAACTTCGCTG+TGG | 0.647618 | 1_4:+69546727 | Msa0181360:CDS |
| AAACGGAGTGTTCAATAATG+GGG | 0.662411 | 1_4:+69554278 | Msa0181360:CDS |
| GTGATGAAAATCAGACAACA+AGG | 0.672906 | 1_4:+69554991 | Msa0181360:intron |
| GAGAGAGCACAAACCCGCAG+GGG | 0.679302 | 1_4:+69551204 | Msa0181360:CDS |
| GTGAAGCTGAGATACTGTGA+TGG | 0.689447 | 1_4:+69554240 | Msa0181360:CDS |
| GTTGTCACAGTGGTGAAAGG+TGG | 0.697162 | 1_4:-69555226 | None:intergenic |
| ATTATTATATCTAATCACGG+TGG | 0.766922 | 1_4:+69546757 | Msa0181360:CDS |
| ACTTGGTGAAGTTGTCACAG+TGG | 0.810181 | 1_4:-69555236 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTTTTTTAATTTTA+TGG | + | chr1_4:69548307-69548326 | Msa0181360:intron | 0.0% |
| !!! | TTTAATTTTTTTAATTTTAT+GGG | + | chr1_4:69548308-69548327 | Msa0181360:intron | 0.0% |
| !! | AGTAAAAAAGAATATTTATT+TGG | - | chr1_4:69547860-69547879 | None:intergenic | 10.0% |
| !! | TATAATCATTTAAATTTGAT+AGG | + | chr1_4:69548883-69548902 | Msa0181360:intron | 10.0% |
| !!! | TTATTATGAAAATTCTTTTA+AGG | - | chr1_4:69549267-69549286 | None:intergenic | 10.0% |
| !! | TATTAATTATTTGGTAAAAA+AGG | + | chr1_4:69549288-69549307 | Msa0181360:intron | 10.0% |
| !! | TATTAATTATTTGGTAAAAA+AGG | + | chr1_4:69549288-69549307 | Msa0181360:intron | 10.0% |
| !! | ATTAATTATTTGGTAAAAAA+GGG | + | chr1_4:69549289-69549308 | Msa0181360:intron | 10.0% |
| !! | TTAATTATATGTCAAATTAA+TGG | + | chr1_4:69549373-69549392 | Msa0181360:intron | 10.0% |
| !!! | TTAAATCTTATGTTTTTTAA+GGG | + | chr1_4:69549544-69549563 | Msa0181360:intron | 10.0% |
| !!! | ATATTTTATTGTATACATAT+AGG | + | chr1_4:69549799-69549818 | Msa0181360:intron | 10.0% |
| !!! | AATTTTTAAATTCAACTAAA+AGG | - | chr1_4:69550806-69550825 | None:intergenic | 10.0% |
| !! | TAGTTGAATTTAAAAATTTA+AGG | + | chr1_4:69550808-69550827 | Msa0181360:intron | 10.0% |
| !!! | CATTCTATATATTTATTTTT+TGG | - | chr1_4:69551379-69551398 | None:intergenic | 10.0% |
| !! | ATATAAAAGAAATAAAGAAA+GGG | - | chr1_4:69553372-69553391 | None:intergenic | 10.0% |
| !! | AATATAAAAGAAATAAAGAA+AGG | - | chr1_4:69553373-69553392 | None:intergenic | 10.0% |
| !!! | AAAAAGTGTTTTTTTTTTTT+TGG | + | chr1_4:69554093-69554112 | Msa0181360:intron | 10.0% |
| !!! | TATTTTTTTTTTTTTTTGAG+AGG | - | chr1_4:69554754-69554773 | None:intergenic | 10.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr1_4:69547017-69547036 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr1_4:69547018-69547037 | None:intergenic | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | - | chr1_4:69547082-69547101 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr1_4:69547083-69547102 | None:intergenic | 15.0% |
| !! | TTATTTATTGAAATTATGAG+TGG | + | chr1_4:69547166-69547185 | Msa0181360:intron | 15.0% |
| !! | TAAACTTTCATATGAATAAT+TGG | + | chr1_4:69547365-69547384 | Msa0181360:intron | 15.0% |
| !!! | ACTTTCTTTTATACTTAAAT+TGG | - | chr1_4:69547449-69547468 | None:intergenic | 15.0% |
| !!! | ATATTCTTTTTTACTACTTT+AGG | + | chr1_4:69547865-69547884 | Msa0181360:intron | 15.0% |
| !! | GAAAAAAATTAAAGTTGTAT+TGG | + | chr1_4:69548160-69548179 | Msa0181360:intron | 15.0% |
| !!! | ACATATTTTTAGATATTTGT+AGG | - | chr1_4:69548940-69548959 | None:intergenic | 15.0% |
| !! | ATAGTTATCATACATTATTA+TGG | + | chr1_4:69549469-69549488 | Msa0181360:intron | 15.0% |
| !!! | CTTAAATCTTATGTTTTTTA+AGG | + | chr1_4:69549543-69549562 | Msa0181360:intron | 15.0% |
| !!! | TAAATCTTATGTTTTTTAAG+GGG | + | chr1_4:69549545-69549564 | Msa0181360:intron | 15.0% |
| !!! | TTTTTGCTTATAAATGTAAT+CGG | - | chr1_4:69549967-69549986 | None:intergenic | 15.0% |
| !!! | TAAGCAAAAAATGATTTTTT+AGG | - | chr1_4:69550074-69550093 | None:intergenic | 15.0% |
| !!! | TTTTTCAATATATCAAAAAG+AGG | - | chr1_4:69550352-69550371 | None:intergenic | 15.0% |
| !! | ATATAAAGAGAGAAAAAAAA+AGG | + | chr1_4:69550412-69550431 | Msa0181360:intron | 15.0% |
| !!! | GTATATGTAATGTTTTTTTT+AGG | + | chr1_4:69550486-69550505 | Msa0181360:intron | 15.0% |
| !!! | AACATTTTCACTTTTTTTTT+TGG | - | chr1_4:69550551-69550570 | None:intergenic | 15.0% |
| !!! | AAAAAGTGAAAATGTTTTTT+AGG | + | chr1_4:69550555-69550574 | Msa0181360:intron | 15.0% |
| !! | TAAAAATTTAAGGATCAAAT+TGG | + | chr1_4:69550818-69550837 | Msa0181360:intron | 15.0% |
| !! | GCAAAAAATTCATTAATAAT+CGG | + | chr1_4:69551802-69551821 | Msa0181360:intron | 15.0% |
| !!! | CTTTATTTCTTTTATATTTC+TGG | + | chr1_4:69553375-69553394 | Msa0181360:intron | 15.0% |
| !! | ATCAAAAAATTGTAATAAAG+TGG | + | chr1_4:69553559-69553578 | Msa0181360:intron | 15.0% |
| !!! | TGTAAAAGTCTTTTTTTTTT+TGG | - | chr1_4:69554209-69554228 | None:intergenic | 15.0% |
| !!! | AAAAAAAAGACTTTTACAAT+TGG | + | chr1_4:69554211-69554230 | Msa0181360:intron | 15.0% |
| !!! | ATTTTAATGTAATATTACCT+TGG | - | chr1_4:69554391-69554410 | None:intergenic | 15.0% |
| !! | GGATCAATAATTAAAATTAT+CGG | - | chr1_4:69554869-69554888 | None:intergenic | 15.0% |
| !! | ATATTTACAAATGATATCAT+TGG | - | chr1_4:69555927-69555946 | None:intergenic | 15.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr1_4:69546948-69546967 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr1_4:69546985-69547004 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr1_4:69547058-69547077 | None:intergenic | 20.0% |
| !! | AAAAGTGGAATATATTGTAT+TGG | - | chr1_4:69547059-69547078 | None:intergenic | 20.0% |
| !!! | AAATTTTAATGCAACAATAG+AGG | + | chr1_4:69548799-69548818 | Msa0181360:intron | 20.0% |
| !! | TAAATTTGATAGGTTTCAAA+TGG | + | chr1_4:69548893-69548912 | Msa0181360:intron | 20.0% |
| !! | GAAAATGTATAAATTAGGAA+AGG | - | chr1_4:69549045-69549064 | None:intergenic | 20.0% |
| !!! | CCAATATAATTTGTTTTTTG+CGG | - | chr1_4:69549080-69549099 | None:intergenic | 20.0% |
| !! | AATTGTTAAGAGATTCTAAA+GGG | + | chr1_4:69549184-69549203 | Msa0181360:intron | 20.0% |
| !!! | TAAGCAAAAAACAACTTTTT+TGG | + | chr1_4:69549977-69549996 | Msa0181360:intron | 20.0% |
| !! | CATTTAATGTCTAATGTATT+TGG | + | chr1_4:69550002-69550021 | Msa0181360:intron | 20.0% |
| !! | CATTGAATATCTAATGTATT+TGG | - | chr1_4:69550049-69550068 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGAGTTCTTTTAA+TGG | + | chr1_4:69550172-69550191 | Msa0181360:intron | 20.0% |
| !! | CTATGATAAATACATCAATT+TGG | - | chr1_4:69550775-69550794 | None:intergenic | 20.0% |
| !! | GATGTATTTATCATAGTTTA+AGG | + | chr1_4:69550779-69550798 | Msa0181360:intron | 20.0% |
| !!! | TTTTCTGATTTCTACTAATT+TGG | + | chr1_4:69551668-69551687 | Msa0181360:intron | 20.0% |
| !! | TCTATTAAAAAAAATCTGTC+AGG | - | chr1_4:69551958-69551977 | None:intergenic | 20.0% |
| !!! | CCATAATTGTTATTTTTACT+TGG | - | chr1_4:69552025-69552044 | None:intergenic | 20.0% |
| !! | CCAAGTAAAAATAACAATTA+TGG | + | chr1_4:69552022-69552041 | Msa0181360:intron | 20.0% |
| !! | AGTAAAAATAACAATTATGG+TGG | + | chr1_4:69552025-69552044 | Msa0181360:intron | 20.0% |
| !! | AAGACAAAAGCAATAAAATA+AGG | - | chr1_4:69552551-69552570 | None:intergenic | 20.0% |
| !!! | AGATATACCTTATTTCTTTA+TGG | + | chr1_4:69553168-69553187 | Msa0181360:intron | 20.0% |
| !!! | GATATACCTTATTTCTTTAT+GGG | + | chr1_4:69553169-69553188 | Msa0181360:intron | 20.0% |
| !! | TAATTTATTGATGAAAGGTA+TGG | - | chr1_4:69553814-69553833 | None:intergenic | 20.0% |
| !! | ACCTTTCATCAATAAATTAA+AGG | + | chr1_4:69553815-69553834 | Msa0181360:intron | 20.0% |
| !! | CCTTTCATCAATAAATTAAA+GGG | + | chr1_4:69553816-69553835 | Msa0181360:intron | 20.0% |
| !! | GTAAATATAGTTTCTTAAAG+TGG | - | chr1_4:69554053-69554072 | None:intergenic | 20.0% |
| !!! | TTTTTTAAATTTATGCACCA+AGG | + | chr1_4:69554371-69554390 | Msa0181360:intron | 20.0% |
| !! | TCATTTCAATCGTAAAAATA+AGG | - | chr1_4:69554628-69554647 | None:intergenic | 20.0% |
| !! | TAAAACAACGGAAAATAATT+AGG | + | chr1_4:69554667-69554686 | Msa0181360:intron | 20.0% |
| !!! | TTTTTTTTTTTTTTGAGAGG+AGG | - | chr1_4:69554751-69554770 | None:intergenic | 20.0% |
| !!! | AGTTCTATTTCTAAATAGTA+TGG | + | chr1_4:69554824-69554843 | Msa0181360:intron | 20.0% |
| !!! | TTTTAATTATTGATCCACAA+TGG | + | chr1_4:69554873-69554892 | Msa0181360:intron | 20.0% |
| !!! | TTATATACATACTTGTGTTT+TGG | + | chr1_4:69555503-69555522 | Msa0181360:intron | 20.0% |
| !! | ATATCTTATGAAATAGAGAA+AGG | + | chr1_4:69556093-69556112 | Msa0181360:intron | 20.0% |
| !! | TCTTATGCAAATTCAATATA+GGG | - | chr1_4:69556134-69556153 | None:intergenic | 20.0% |
| ! | CGCATTATTATATCTAATCA+CGG | + | chr1_4:69546754-69546773 | Msa0181360:CDS | 25.0% |
| ! | ATTATTATATCTAATCACGG+TGG | + | chr1_4:69546757-69546776 | Msa0181360:CDS | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr1_4:69546949-69546968 | None:intergenic | 25.0% |
| !!! | TGAAATGGATCAGTTATTTT+GGG | - | chr1_4:69546970-69546989 | None:intergenic | 25.0% |
| !! | TTGAAATGGATCAGTTATTT+TGG | - | chr1_4:69546971-69546990 | None:intergenic | 25.0% |
| ! | TGTATAAATAAAGGGAAAAG+TGG | - | chr1_4:69547074-69547093 | None:intergenic | 25.0% |
| ! | TTAAGGATTATCATACTTTC+AGG | - | chr1_4:69547630-69547649 | None:intergenic | 25.0% |
| ! | TCAATTCTTCGATATCAATT+TGG | + | chr1_4:69547660-69547679 | Msa0181360:intron | 25.0% |
| !!! | AATCGACACTCATTTTAAAA+CGG | - | chr1_4:69547979-69547998 | None:intergenic | 25.0% |
| !! | TGTCTTGTTCTTATAAAGTA+AGG | - | chr1_4:69548071-69548090 | None:intergenic | 25.0% |
| !! | AAAAGTTGGAGTATTTATTG+AGG | + | chr1_4:69548125-69548144 | Msa0181360:intron | 25.0% |
| !! | AAAGTTGGAGTATTTATTGA+GGG | + | chr1_4:69548126-69548145 | Msa0181360:intron | 25.0% |
| !! | TTGTGTCTAACCAAATATTT+TGG | + | chr1_4:69548358-69548377 | Msa0181360:intron | 25.0% |
| !! | TGTGTCTAACCAAATATTTT+GGG | + | chr1_4:69548359-69548378 | Msa0181360:intron | 25.0% |
| ! | TCATACTTACCCAAAATATT+TGG | - | chr1_4:69548371-69548390 | None:intergenic | 25.0% |
| !! | AAAAGTGAAAGTGTACAAAA+TGG | + | chr1_4:69548399-69548418 | Msa0181360:intron | 25.0% |
| !! | TTTTGTAGCATTTGAAAAAG+TGG | + | chr1_4:69548453-69548472 | Msa0181360:intron | 25.0% |
| ! | TTTGTAGCATTTGAAAAAGT+GGG | + | chr1_4:69548454-69548473 | Msa0181360:intron | 25.0% |
| ! | ATTAAAGTGTGATGATTGAT+TGG | + | chr1_4:69548527-69548546 | Msa0181360:intron | 25.0% |
| ! | AAATTTCATGTCAATGACAA+TGG | - | chr1_4:69548755-69548774 | None:intergenic | 25.0% |
| !!! | TAATTTTTTCCCATTAGATC+CGG | - | chr1_4:69548825-69548844 | None:intergenic | 25.0% |
| ! | TAATGGGAAAAAATTAGACT+CGG | + | chr1_4:69548829-69548848 | Msa0181360:intron | 25.0% |
| ! | TCAAATGGAATTAACTTTGA+TGG | + | chr1_4:69548908-69548927 | Msa0181360:intron | 25.0% |
| ! | CCGCAAAAAACAAATTATAT+TGG | + | chr1_4:69549077-69549096 | Msa0181360:intron | 25.0% |
| ! | GAATTGTTAAGAGATTCTAA+AGG | + | chr1_4:69549183-69549202 | Msa0181360:intron | 25.0% |
| !! | ATTGTTAAGAGATTCTAAAG+GGG | + | chr1_4:69549185-69549204 | Msa0181360:intron | 25.0% |
| !!! | ATATGGGTACGTTTTTATTT+TGG | - | chr1_4:69549713-69549732 | None:intergenic | 25.0% |
| ! | AAATAAAAACGTACCCATAT+CGG | + | chr1_4:69549713-69549732 | Msa0181360:intron | 25.0% |
| ! | AATTAATTCTGATACTTCGT+GGG | - | chr1_4:69549763-69549782 | None:intergenic | 25.0% |
| ! | TAATTAATTCTGATACTTCG+TGG | - | chr1_4:69549764-69549783 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | + | chr1_4:69550084-69550103 | Msa0181360:intron | 25.0% |
| ! | ATACAACAAAGATACATAGT+TGG | - | chr1_4:69550470-69550489 | None:intergenic | 25.0% |
| ! | TCGAAACACATAATTTATGA+AGG | - | chr1_4:69550883-69550902 | None:intergenic | 25.0% |
| ! | TTAATTTCAATGTCTTTGCT+TGG | - | chr1_4:69551001-69551020 | None:intergenic | 25.0% |
| !! | TAAAATCTGAAATGACAAAG+TGG | + | chr1_4:69551018-69551037 | Msa0181360:intron | 25.0% |
| ! | AATTTCTTCAGTTGAGATTT+GGG | - | chr1_4:69551085-69551104 | None:intergenic | 25.0% |
| ! | TAATTTCTTCAGTTGAGATT+TGG | - | chr1_4:69551086-69551105 | None:intergenic | 25.0% |
| !!! | TATTGATTTACCTGGATTAA+CGG | - | chr1_4:69551289-69551308 | None:intergenic | 25.0% |
| ! | GTAACTAGAACAATAGATTA+GGG | - | chr1_4:69551527-69551546 | None:intergenic | 25.0% |
| !! | AATTTGGTGGTAAAATGTAT+TGG | + | chr1_4:69551684-69551703 | Msa0181360:intron | 25.0% |
| ! | TATTGAGAAGAAGAAGAAAA+AGG | - | chr1_4:69552152-69552171 | None:intergenic | 25.0% |
| ! | TTCTTCTTCTTCTCAATAAT+AGG | + | chr1_4:69552154-69552173 | Msa0181360:intron | 25.0% |
| ! | TGAATTTAACGCAATCTTAT+AGG | + | chr1_4:69552304-69552323 | Msa0181360:intron | 25.0% |
| ! | TGAATATGGTTAATTTAGAG+CGG | - | chr1_4:69552350-69552369 | None:intergenic | 25.0% |
| ! | GAAATAAGAATGCTTGAATA+TGG | - | chr1_4:69552364-69552383 | None:intergenic | 25.0% |
| !! | AGTTATTGATAGTTGATTAG+TGG | + | chr1_4:69552840-69552859 | Msa0181360:intron | 25.0% |
| !!! | CCATTTTTTGGTTCTTAAAT+GGG | - | chr1_4:69552968-69552987 | None:intergenic | 25.0% |
| ! | CCATTTAAGAACCAAAAAAT+GGG | + | chr1_4:69552966-69552985 | Msa0181360:intron | 25.0% |
| ! | ACTGGTTAAAGAAATAGAAA+AGG | - | chr1_4:69553325-69553344 | None:intergenic | 25.0% |
| !! | TTCATTTTGTCTCTTTTCAT+TGG | + | chr1_4:69553466-69553485 | Msa0181360:intron | 25.0% |
| !! | TTTTTCTCTCTCTATTGTTT+TGG | - | chr1_4:69553493-69553512 | None:intergenic | 25.0% |
| !! | CTCATTAATTTGAGTTTACA+GGG | - | chr1_4:69553718-69553737 | None:intergenic | 25.0% |
| !! | ACTCATTAATTTGAGTTTAC+AGG | - | chr1_4:69553719-69553738 | None:intergenic | 25.0% |
| !! | CCCTTTAATTTATTGATGAA+AGG | - | chr1_4:69553819-69553838 | None:intergenic | 25.0% |
| !! | GTTACAATTTTGTAAAAGTC+TGG | - | chr1_4:69554187-69554206 | None:intergenic | 25.0% |
| ! | TTACATTAAAATGAATCACG+AGG | + | chr1_4:69554399-69554418 | Msa0181360:intron | 25.0% |
| ! | AAATTTAACGACGATAAACA+TGG | + | chr1_4:69554543-69554562 | Msa0181360:intron | 25.0% |
| !!! | TAACATCTTTTTTTGGTAGT+GGG | - | chr1_4:69554597-69554616 | None:intergenic | 25.0% |
| !!! | ATAACATCTTTTTTTGGTAG+TGG | - | chr1_4:69554598-69554617 | None:intergenic | 25.0% |
| !!! | GGACAAATAACATCTTTTTT+TGG | - | chr1_4:69554604-69554623 | None:intergenic | 25.0% |
| ! | TTTCAATCGTAAAAATAAGG+AGG | - | chr1_4:69554625-69554644 | None:intergenic | 25.0% |
| !! | ACTGATATCGATTAAAACAA+CGG | + | chr1_4:69554655-69554674 | Msa0181360:intron | 25.0% |
| !! | TAGTTACTCTATGAAAGTTT+TGG | + | chr1_4:69555101-69555120 | Msa0181360:intron | 25.0% |
| ! | CAAAATAGAGCAAAAAAAGA+GGG | - | chr1_4:69555340-69555359 | None:intergenic | 25.0% |
| ! | TCAAAATAGAGCAAAAAAAG+AGG | - | chr1_4:69555341-69555360 | None:intergenic | 25.0% |
| ! | AGATGAAAGTGATTAATAGA+CGG | + | chr1_4:69555602-69555621 | Msa0181360:intron | 25.0% |
| ! | AAGCATTATACAAACTATTG+TGG | + | chr1_4:69555667-69555686 | Msa0181360:intron | 25.0% |
| !!! | AATGATTTTGACACAAGATT+CGG | + | chr1_4:69555733-69555752 | Msa0181360:intron | 25.0% |
| ! | GTAATAAGAAATCCTAATAG+AGG | - | chr1_4:69555852-69555871 | None:intergenic | 25.0% |
| ! | CTCTTATGCAAATTCAATAT+AGG | - | chr1_4:69556135-69556154 | None:intergenic | 25.0% |
| !! | AAAAGTATGTAACAGTAAAC+AGG | + | chr1_4:69556159-69556178 | Msa0181360:intron | 25.0% |
| !! | GTGTGAATTTGTAGTTTGTT+TGG | + | chr1_4:69547188-69547207 | Msa0181360:intron | 30.0% |
| !! | GAATTTGTAGTTTGTTTGGA+TGG | + | chr1_4:69547192-69547211 | Msa0181360:intron | 30.0% |
| TATCATTTGCATAGAGGATT+TGG | + | chr1_4:69547228-69547247 | Msa0181360:intron | 30.0% | |
| AAAGTTAACACACTTGAGTT+GGG | + | chr1_4:69547464-69547483 | Msa0181360:intron | 30.0% | |
| ATGATAATCCTTAAAGTCTC+AGG | + | chr1_4:69547636-69547655 | Msa0181360:intron | 30.0% | |
| TTCTTCGATATCAATTTGGA+TGG | + | chr1_4:69547664-69547683 | Msa0181360:intron | 30.0% | |
| TCTTCGATATCAATTTGGAT+GGG | + | chr1_4:69547665-69547684 | Msa0181360:intron | 30.0% | |
| AGGATAAAAGAGAGTAAGTA+CGG | + | chr1_4:69547885-69547904 | Msa0181360:intron | 30.0% | |
| TTGTGTAGACATAAGCATTT+AGG | + | chr1_4:69547919-69547938 | Msa0181360:intron | 30.0% | |
| TTCCTTAATATGTGTGCAAT+TGG | - | chr1_4:69548005-69548024 | None:intergenic | 30.0% | |
| ATTGCACACATATTAAGGAA+TGG | + | chr1_4:69548005-69548024 | Msa0181360:intron | 30.0% | |
| GTATTTATTGAGGGTAAAGT+TGG | + | chr1_4:69548135-69548154 | Msa0181360:intron | 30.0% | |
| !! | AAGTGACACTCATTTTGAAA+CGG | + | chr1_4:69548190-69548209 | Msa0181360:intron | 30.0% |
| AACACTAAATGTGACATGTT+AGG | - | chr1_4:69548340-69548359 | None:intergenic | 30.0% | |
| TTGTAGCATTTGAAAAAGTG+GGG | + | chr1_4:69548455-69548474 | Msa0181360:intron | 30.0% | |
| !!! | AAAGCTTGTTTTTTGTCTCA+CGG | - | chr1_4:69548657-69548676 | None:intergenic | 30.0% |
| CTATATTTACCGTTCACTTT+AGG | + | chr1_4:69548698-69548717 | Msa0181360:intron | 30.0% | |
| AAGTTTCATCCTAAAGTGAA+CGG | - | chr1_4:69548710-69548729 | None:intergenic | 30.0% | |
| ATGGCACACTTAAAAATGAA+GGG | - | chr1_4:69548736-69548755 | None:intergenic | 30.0% | |
| AATGGCACACTTAAAAATGA+AGG | - | chr1_4:69548737-69548756 | None:intergenic | 30.0% | |
| ! | TAAATTAGGAAAGGCATACA+AGG | - | chr1_4:69549036-69549055 | None:intergenic | 30.0% |
| GGAGGGAAAATGTATAAATT+AGG | - | chr1_4:69549050-69549069 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTTTGCGGAATTCA+AGG | - | chr1_4:69549071-69549090 | None:intergenic | 30.0% |
| AAATTAGATCGTGAACTTCT+CGG | + | chr1_4:69549103-69549122 | Msa0181360:intron | 30.0% | |
| !!! | GTTTTTATTTTGGAGTATCC+AGG | - | chr1_4:69549703-69549722 | None:intergenic | 30.0% |
| !! | GGAGAGAGTATAATTTTAAG+TGG | - | chr1_4:69549946-69549965 | None:intergenic | 30.0% |
| ! | TTGTTGAGTTCTTTTAATGG+TGG | + | chr1_4:69550175-69550194 | Msa0181360:intron | 30.0% |
| CTACGAAAAATATATCAACG+TGG | + | chr1_4:69550693-69550712 | Msa0181360:intron | 30.0% | |
| GTTACTGTTGAACCATATAT+AGG | + | chr1_4:69550933-69550952 | Msa0181360:intron | 30.0% | |
| TGAACCATATATAGGTATGT+CGG | + | chr1_4:69550941-69550960 | Msa0181360:intron | 30.0% | |
| !! | AATGATCACCACCATTTTTA+TGG | + | chr1_4:69551135-69551154 | Msa0181360:intron | 30.0% |
| ACCAAATATGAGAACTTCAA+GGG | + | chr1_4:69551243-69551262 | Msa0181360:CDS | 30.0% | |
| CGTAACTAGAACAATAGATT+AGG | - | chr1_4:69551528-69551547 | None:intergenic | 30.0% | |
| AATGGATCATAAAGATAACG+TGG | - | chr1_4:69551583-69551602 | None:intergenic | 30.0% | |
| CGTTATCTTTATGATCCATT+TGG | + | chr1_4:69551583-69551602 | Msa0181360:intron | 30.0% | |
| TCTGATTTCTACTAATTTGG+TGG | + | chr1_4:69551671-69551690 | Msa0181360:intron | 30.0% | |
| ACAATGCATTATTCTATGCA+GGG | + | chr1_4:69551867-69551886 | Msa0181360:intron | 30.0% | |
| ACCTTATAAGGTGAATAAGT+GGG | - | chr1_4:69551915-69551934 | None:intergenic | 30.0% | |
| TGGTTAGAATTCACCTTATA+AGG | - | chr1_4:69551927-69551946 | None:intergenic | 30.0% | |
| AGTGAAAATCTTGTAACATG+TGG | + | chr1_4:69552235-69552254 | Msa0181360:intron | 30.0% | |
| ! | AATACATGTTAAAGCACTAC+GGG | - | chr1_4:69552506-69552525 | None:intergenic | 30.0% |
| ! | GAATACATGTTAAAGCACTA+CGG | - | chr1_4:69552507-69552526 | None:intergenic | 30.0% |
| AGTGCTTTAACATGTATTCT+AGG | + | chr1_4:69552508-69552527 | Msa0181360:intron | 30.0% | |
| GTTGGATATAATAATTGGAG+AGG | - | chr1_4:69552600-69552619 | None:intergenic | 30.0% | |
| ! | CGTGAGTTGGATATAATAAT+TGG | - | chr1_4:69552605-69552624 | None:intergenic | 30.0% |
| TACCTATTAAGTATCTCCAA+TGG | + | chr1_4:69552708-69552727 | Msa0181360:intron | 30.0% | |
| ! | AATGGAGATAATCTTTTGCA+GGG | + | chr1_4:69552726-69552745 | Msa0181360:intron | 30.0% |
| !! | TTAAGACCACCACTTTTAAA+TGG | + | chr1_4:69552772-69552791 | Msa0181360:intron | 30.0% |
| !! | TAAGACCACCACTTTTAAAT+GGG | + | chr1_4:69552773-69552792 | Msa0181360:intron | 30.0% |
| CTCACACAAAGTTCTTAAAT+GGG | - | chr1_4:69552868-69552887 | None:intergenic | 30.0% | |
| TCTCACACAAAGTTCTTAAA+TGG | - | chr1_4:69552869-69552888 | None:intergenic | 30.0% | |
| CCCATTTAAGAACCAAAAAA+TGG | + | chr1_4:69552965-69552984 | Msa0181360:intron | 30.0% | |
| !!! | CCCATTTTTTGGTTCTTAAA+TGG | - | chr1_4:69552969-69552988 | None:intergenic | 30.0% |
| ! | ATTTTTCCTAACTCAGATGT+TGG | + | chr1_4:69553144-69553163 | Msa0181360:intron | 30.0% |
| CCAAAACCCATAAAGAAATA+AGG | - | chr1_4:69553178-69553197 | None:intergenic | 30.0% | |
| !! | CCTTATTTCTTTATGGGTTT+TGG | + | chr1_4:69553175-69553194 | Msa0181360:intron | 30.0% |
| ACTGGTTAAGAAACTAAAAG+TGG | + | chr1_4:69553217-69553236 | Msa0181360:intron | 30.0% | |
| AAAGAAAGGGAAATGTTAAC+AGG | - | chr1_4:69553359-69553378 | None:intergenic | 30.0% | |
| !! | AAAGTGGATTTTCTGTAAGT+GGG | - | chr1_4:69554037-69554056 | None:intergenic | 30.0% |
| !! | TAAAGTGGATTTTCTGTAAG+TGG | - | chr1_4:69554038-69554057 | None:intergenic | 30.0% |
| ! | AAGACTTTTACAATTGGAAC+AGG | + | chr1_4:69554217-69554236 | Msa0181360:intron | 30.0% |
| ! | AGACTTTTACAATTGGAACA+GGG | + | chr1_4:69554218-69554237 | Msa0181360:intron | 30.0% |
| AATGAATCACGAGGATATTT+AGG | + | chr1_4:69554408-69554427 | Msa0181360:intron | 30.0% | |
| ATATGAATCACCTTCTTAAG+TGG | + | chr1_4:69554488-69554507 | Msa0181360:intron | 30.0% | |
| ! | ACCAACTTTGTATGTTGTTT+AGG | + | chr1_4:69555170-69555189 | Msa0181360:intron | 30.0% |
| !!! | ACTTTTGAAAAAGTACCTCA+TGG | - | chr1_4:69555445-69555464 | None:intergenic | 30.0% |
| ATAAATCGCGCATTTATTGA+AGG | - | chr1_4:69555487-69555506 | None:intergenic | 30.0% | |
| AAAGTTTATGTGCTTTCTGA+AGG | + | chr1_4:69555553-69555572 | Msa0181360:intron | 30.0% | |
| TTACATTATTAGTTGCTGAG+TGG | + | chr1_4:69555868-69555887 | Msa0181360:intron | 30.0% | |
| !!! | ATAGTTTTGTCTTGTGTAAC+AGG | + | chr1_4:69556192-69556211 | Msa0181360:intron | 30.0% |
| !!! | TAGTTTTGTCTTGTGTAACA+GGG | + | chr1_4:69556193-69556212 | Msa0181360:intron | 30.0% |
| CTCACAAGAACATAAGCTTA+TGG | + | chr1_4:69546796-69546815 | Msa0181360:CDS | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr1_4:69546935-69546954 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr1_4:69547104-69547123 | Msa0181360:intron | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | + | chr1_4:69547117-69547136 | Msa0181360:intron | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | + | chr1_4:69547118-69547137 | Msa0181360:intron | 35.0% | |
| TTGTTTGGATGGAAGTTTAC+CGG | + | chr1_4:69547203-69547222 | Msa0181360:intron | 35.0% | |
| ! | CAATTGGCTTCTACAATTTG+AGG | + | chr1_4:69547263-69547282 | Msa0181360:CDS | 35.0% |
| GAAAGTTAACACACTTGAGT+TGG | + | chr1_4:69547463-69547482 | Msa0181360:intron | 35.0% | |
| !! | TCAACACATTTGAGTTGATC+AGG | + | chr1_4:69547588-69547607 | Msa0181360:intron | 35.0% |
| GAATTGAACCTGAGACTTTA+AGG | - | chr1_4:69547647-69547666 | None:intergenic | 35.0% | |
| ATAAAAGAGAGTAAGTACGG+AGG | + | chr1_4:69547888-69547907 | Msa0181360:intron | 35.0% | |
| !!! | GACACTCATTTTAAAACGGA+TGG | - | chr1_4:69547975-69547994 | None:intergenic | 35.0% |
| AGCCAATTGCACACATATTA+AGG | + | chr1_4:69548000-69548019 | Msa0181360:intron | 35.0% | |
| ATTGTGTGAGAGAGAAAAGT+TGG | + | chr1_4:69548111-69548130 | Msa0181360:intron | 35.0% | |
| TGTAGCATTTGAAAAAGTGG+GGG | + | chr1_4:69548456-69548475 | Msa0181360:intron | 35.0% | |
| !!! | AAGCTTGTTTTTTGTCTCAC+GGG | - | chr1_4:69548656-69548675 | None:intergenic | 35.0% |
| ACGGTAAATATAGTGAAGGA+CGG | - | chr1_4:69548691-69548710 | None:intergenic | 35.0% | |
| GTGAACGGTAAATATAGTGA+AGG | - | chr1_4:69548695-69548714 | None:intergenic | 35.0% | |
| TTTAATGCAACAATAGAGGC+CGG | + | chr1_4:69548803-69548822 | Msa0181360:intron | 35.0% | |
| !!! | TTTTTTGCGGAATTCAAGGA+GGG | - | chr1_4:69549067-69549086 | None:intergenic | 35.0% |
| AATTAGATCGTGAACTTCTC+GGG | + | chr1_4:69549104-69549123 | Msa0181360:intron | 35.0% | |
| GGATATTTCACAGATACACA+AGG | + | chr1_4:69549820-69549839 | Msa0181360:intron | 35.0% | |
| AATTTGGTCCTTCAGTTAAC+TGG | - | chr1_4:69550759-69550778 | None:intergenic | 35.0% | |
| TTCTCCGACATACCTATATA+TGG | - | chr1_4:69550948-69550967 | None:intergenic | 35.0% | |
| TTCAATGTCTTTGCTTGGAT+TGG | - | chr1_4:69550996-69551015 | None:intergenic | 35.0% | |
| !! | AGTTATTTCAGTTAGCTCTG+TGG | + | chr1_4:69551055-69551074 | Msa0181360:intron | 35.0% |
| !! | GTTATTTCAGTTAGCTCTGT+GGG | + | chr1_4:69551056-69551075 | Msa0181360:intron | 35.0% |
| !! | TTATTTCAGTTAGCTCTGTG+GGG | + | chr1_4:69551057-69551076 | Msa0181360:intron | 35.0% |
| TTATGAATGCAGCACTAAAG+GGG | - | chr1_4:69551109-69551128 | None:intergenic | 35.0% | |
| CTTATGAATGCAGCACTAAA+GGG | - | chr1_4:69551110-69551129 | None:intergenic | 35.0% | |
| ACTTATGAATGCAGCACTAA+AGG | - | chr1_4:69551111-69551130 | None:intergenic | 35.0% | |
| ! | CATTTTTATGGTACTTGCCA+GGG | + | chr1_4:69551147-69551166 | Msa0181360:intron | 35.0% |
| CAATGACTTGAAATCATGCT+TGG | + | chr1_4:69551182-69551201 | Msa0181360:CDS | 35.0% | |
| GACCAAATATGAGAACTTCA+AGG | + | chr1_4:69551242-69551261 | Msa0181360:CDS | 35.0% | |
| ACCCTTGAAGTTCTCATATT+TGG | - | chr1_4:69551247-69551266 | None:intergenic | 35.0% | |
| !! | AGAGCAGATATTGATTTACC+TGG | - | chr1_4:69551297-69551316 | None:intergenic | 35.0% |
| !! | TGTTGGTGGTTTAGAGTATT+CGG | - | chr1_4:69551554-69551573 | None:intergenic | 35.0% |
| TCATAAAGATAACGTGGTGT+TGG | - | chr1_4:69551577-69551596 | None:intergenic | 35.0% | |
| CGATATCTCATTATGCCAAA+TGG | - | chr1_4:69551601-69551620 | None:intergenic | 35.0% | |
| ! | TGGTAAAATGTATTGGTAGC+AGG | + | chr1_4:69551691-69551710 | Msa0181360:intron | 35.0% |
| ! | GGTAAAATGTATTGGTAGCA+GGG | + | chr1_4:69551692-69551711 | Msa0181360:intron | 35.0% |
| !!! | TCCTAAGATTTTTTGTGTCC+AGG | + | chr1_4:69551719-69551738 | Msa0181360:intron | 35.0% |
| TCCTGGACACAAAAAATCTT+AGG | - | chr1_4:69551723-69551742 | None:intergenic | 35.0% | |
| !! | ACAACTTTATTGATTCGTCC+TGG | - | chr1_4:69551740-69551759 | None:intergenic | 35.0% |
| GACAATGCATTATTCTATGC+AGG | + | chr1_4:69551866-69551885 | Msa0181360:intron | 35.0% | |
| CAATGCATTATTCTATGCAG+GGG | + | chr1_4:69551868-69551887 | Msa0181360:intron | 35.0% | |
| CCTTATAAGGTGAATAAGTG+GGG | - | chr1_4:69551914-69551933 | None:intergenic | 35.0% | |
| CACCTTATAAGGTGAATAAG+TGG | - | chr1_4:69551916-69551935 | None:intergenic | 35.0% | |
| TTATGGTGGCCCTAAAAAAA+TGG | + | chr1_4:69552039-69552058 | Msa0181360:intron | 35.0% | |
| ! | TTTTCACTATCGCACCATTT+GGG | - | chr1_4:69552223-69552242 | None:intergenic | 35.0% |
| ! | ATTTTCACTATCGCACCATT+TGG | - | chr1_4:69552224-69552243 | None:intergenic | 35.0% |
| TAAGACTCTCTCAATGAAGA+TGG | - | chr1_4:69552672-69552691 | None:intergenic | 35.0% | |
| CTCCATTGGAGATACTTAAT+AGG | - | chr1_4:69552713-69552732 | None:intergenic | 35.0% | |
| CTGCAAAAGATTATCTCCAT+TGG | - | chr1_4:69552727-69552746 | None:intergenic | 35.0% | |
| ! | CAATGGAGATAATCTTTTGC+AGG | + | chr1_4:69552725-69552744 | Msa0181360:intron | 35.0% |
| TAAGAACTTTGTGTGAGATC+TGG | + | chr1_4:69552871-69552890 | Msa0181360:intron | 35.0% | |
| AAGAACTTTGTGTGAGATCT+GGG | + | chr1_4:69552872-69552891 | Msa0181360:intron | 35.0% | |
| TATCTACCAACATCTGAGTT+AGG | - | chr1_4:69553153-69553172 | None:intergenic | 35.0% | |
| ! | GATGAAAGGTATGGCTAAAA+CGG | - | chr1_4:69553805-69553824 | None:intergenic | 35.0% |
| ! | TTTTGTCAAGTCGAGTTTGA+TGG | - | chr1_4:69553875-69553894 | None:intergenic | 35.0% |
| ! | GAAACGGAGTGTTCAATAAT+GGG | + | chr1_4:69554277-69554296 | Msa0181360:CDS | 35.0% |
| ! | AAACGGAGTGTTCAATAATG+GGG | + | chr1_4:69554278-69554297 | Msa0181360:CDS | 35.0% |
| GTGATGAAAATCAGACAACA+AGG | + | chr1_4:69554991-69555010 | Msa0181360:intron | 35.0% | |
| ACAACAAGGCTTTACTTCAA+AGG | + | chr1_4:69555005-69555024 | Msa0181360:CDS | 35.0% | |
| CAACAAGGCTTTACTTCAAA+GGG | + | chr1_4:69555006-69555025 | Msa0181360:CDS | 35.0% | |
| ACTTCAAAGGGCAAAAGATT+TGG | + | chr1_4:69555018-69555037 | Msa0181360:CDS | 35.0% | |
| CTTCAAAGGGCAAAAGATTT+GGG | + | chr1_4:69555019-69555038 | Msa0181360:CDS | 35.0% | |
| ! | TAAACCTTTTGGTAGAAGGT+CGG | - | chr1_4:69555057-69555076 | None:intergenic | 35.0% |
| ! | TTCCTAAACCTTTTGGTAGA+AGG | - | chr1_4:69555061-69555080 | None:intergenic | 35.0% |
| TCTACCAAAAGGTTTAGGAA+AGG | + | chr1_4:69555061-69555080 | Msa0181360:CDS | 35.0% | |
| GCCTAAACAACATACAAAGT+TGG | - | chr1_4:69555174-69555193 | None:intergenic | 35.0% | |
| !! | CATTTAACACTAGCATTGGT+TGG | - | chr1_4:69555267-69555286 | None:intergenic | 35.0% |
| CAAGCATTTAACACTAGCAT+TGG | - | chr1_4:69555271-69555290 | None:intergenic | 35.0% | |
| !!! | ATGCAGGTTTTTTCCTTGAT+GGG | + | chr1_4:69555295-69555314 | Msa0181360:CDS | 35.0% |
| AGTCTTTAACATACCCATCA+AGG | - | chr1_4:69555311-69555330 | None:intergenic | 35.0% | |
| TCTTGTCTGCAAAAGAAAGA+GGG | - | chr1_4:69555405-69555424 | None:intergenic | 35.0% | |
| ATCTTGTCTGCAAAAGAAAG+AGG | - | chr1_4:69555406-69555425 | None:intergenic | 35.0% | |
| ! | TTTCTGAAGGAGAAATTTCG+AGG | + | chr1_4:69555566-69555585 | Msa0181360:intron | 35.0% |
| TAACTTATCGAGAATGCAAC+TGG | - | chr1_4:69555703-69555722 | None:intergenic | 35.0% | |
| GAGGCTTCCTTATATCATTT+GGG | - | chr1_4:69555833-69555852 | None:intergenic | 35.0% | |
| AGAGGCTTCCTTATATCATT+TGG | - | chr1_4:69555834-69555853 | None:intergenic | 35.0% | |
| GATATAAGGAAGCCTCTATT+AGG | + | chr1_4:69555837-69555856 | Msa0181360:intron | 35.0% | |
| ATCATTGGACTCTATGAAAG+TGG | - | chr1_4:69555912-69555931 | None:intergenic | 35.0% | |
| !! | AGTTTTGTCTTGTGTAACAG+GGG | + | chr1_4:69556194-69556213 | Msa0181360:intron | 35.0% |
| TGTTACAATGAACTTCGCTG+TGG | + | chr1_4:69546727-69546746 | Msa0181360:CDS | 40.0% | |
| ATTTATTACTCCCTCCGTAC+CGG | + | chr1_4:69546913-69546932 | Msa0181360:intron | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | - | chr1_4:69547120-69547139 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+TGG | + | chr1_4:69548230-69548249 | Msa0181360:intron | 40.0% |
| GTAGCATTTGAAAAAGTGGG+GGG | + | chr1_4:69548457-69548476 | Msa0181360:intron | 40.0% | |
| ! | AAAGTCTAGGTTGAGACGAT+AGG | - | chr1_4:69548592-69548611 | None:intergenic | 40.0% |
| !!! | AGCTTGTTTTTTGTCTCACG+GGG | - | chr1_4:69548655-69548674 | None:intergenic | 40.0% |
| AATATAGTGAAGGACGGTGT+TGG | - | chr1_4:69548685-69548704 | None:intergenic | 40.0% | |
| !!! | GTTTTTTGCGGAATTCAAGG+AGG | - | chr1_4:69549068-69549087 | None:intergenic | 40.0% |
| TTGCTTATAAATGTGACCGG+AGG | + | chr1_4:69550087-69550106 | Msa0181360:intron | 40.0% | |
| TGCTTATAAATGTGACCGGA+GGG | + | chr1_4:69550088-69550107 | Msa0181360:intron | 40.0% | |
| ! | GGAGTACTTCTTATGGATGA+AGG | + | chr1_4:69550109-69550128 | Msa0181360:intron | 40.0% |
| ATGGATGAAGGTAATGAGAG+AGG | + | chr1_4:69550121-69550140 | Msa0181360:intron | 40.0% | |
| ATGTGGGATTCTGAACATGT+GGG | - | chr1_4:69550213-69550232 | None:intergenic | 40.0% | |
| AAACATCAACCCACACATGT+GGG | - | chr1_4:69550277-69550296 | None:intergenic | 40.0% | |
| TCCATAGACCAGTTAACTGA+AGG | + | chr1_4:69550748-69550767 | Msa0181360:intron | 40.0% | |
| ! | TCCTTCAGTTAACTGGTCTA+TGG | - | chr1_4:69550752-69550771 | None:intergenic | 40.0% |
| GGCAAGTACCATAAAAATGG+TGG | - | chr1_4:69551146-69551165 | None:intergenic | 40.0% | |
| CCTGGCAAGTACCATAAAAA+TGG | - | chr1_4:69551149-69551168 | None:intergenic | 40.0% | |
| !! | CCATTTTTATGGTACTTGCC+AGG | + | chr1_4:69551146-69551165 | Msa0181360:intron | 40.0% |
| !! | TGTAATTTGTTGAACCCCTG+CGG | - | chr1_4:69551221-69551240 | None:intergenic | 40.0% |
| AACAATGCTACCGTTAATCC+AGG | + | chr1_4:69551276-69551295 | Msa0181360:CDS | 40.0% | |
| ! | AAATGTATTGGTAGCAGGGT+CGG | + | chr1_4:69551696-69551715 | Msa0181360:intron | 40.0% |
| CCCCACTTATTCACCTTATA+AGG | + | chr1_4:69551911-69551930 | Msa0181360:intron | 40.0% | |
| AAATCTGTCAGGTAGCTTAG+TGG | - | chr1_4:69551947-69551966 | None:intergenic | 40.0% | |
| !!! | CCTAGGGCACCATTTTTTTA+GGG | - | chr1_4:69552051-69552070 | None:intergenic | 40.0% |
| !!! | ACCTAGGGCACCATTTTTTT+AGG | - | chr1_4:69552052-69552071 | None:intergenic | 40.0% |
| TGAGTCCCATTTAAAAGTGG+TGG | - | chr1_4:69552781-69552800 | None:intergenic | 40.0% | |
| GTGTGAGTCCCATTTAAAAG+TGG | - | chr1_4:69552784-69552803 | None:intergenic | 40.0% | |
| GGAGTGATTGAGTGCTTATT+AGG | + | chr1_4:69552897-69552916 | Msa0181360:intron | 40.0% | |
| !!! | CAATGGAGACACCCATTTTT+TGG | - | chr1_4:69552980-69552999 | None:intergenic | 40.0% |
| AAAAATGGGTGTCTCCATTG+TGG | + | chr1_4:69552980-69552999 | Msa0181360:intron | 40.0% | |
| TAGTTTCTTAACCAGTGCTC+CGG | - | chr1_4:69553213-69553232 | None:intergenic | 40.0% | |
| TATTTCTTTAACCAGTGCCC+CGG | + | chr1_4:69553329-69553348 | Msa0181360:intron | 40.0% | |
| TTCTGTAAGTGGGTGGAAAT+AGG | - | chr1_4:69554027-69554046 | None:intergenic | 40.0% | |
| ! | TGTGATGGAGCTTCATTTAC+TGG | + | chr1_4:69554255-69554274 | Msa0181360:CDS | 40.0% |
| GGAGCTTCATTTACTGGAAA+CGG | + | chr1_4:69554261-69554280 | Msa0181360:CDS | 40.0% | |
| ! | GGAAACGGAGTGTTCAATAA+TGG | + | chr1_4:69554276-69554295 | Msa0181360:CDS | 40.0% |
| CCACAATAGACCACTTAAGA+AGG | - | chr1_4:69554501-69554520 | None:intergenic | 40.0% | |
| CCTTCTTAAGTGGTCTATTG+TGG | + | chr1_4:69554498-69554517 | Msa0181360:intron | 40.0% | |
| !!! | CATCTTTTTTTGGTAGTGGG+AGG | - | chr1_4:69554594-69554613 | None:intergenic | 40.0% |
| ACTTCATAAGTGGTCCATTG+TGG | - | chr1_4:69554890-69554909 | None:intergenic | 40.0% | |
| CAATGGACCACTTATGAAGT+TGG | + | chr1_4:69554890-69554909 | Msa0181360:intron | 40.0% | |
| GACCTTCTACCAAAAGGTTT+AGG | + | chr1_4:69555056-69555075 | Msa0181360:CDS | 40.0% | |
| GTTGTTTAGGCTTTGCTTTC+AGG | + | chr1_4:69555183-69555202 | Msa0181360:intron | 40.0% | |
| !! | AGCATTGGTTGGCAAATACT+TGG | - | chr1_4:69555256-69555275 | None:intergenic | 40.0% |
| GTTAAATGCTTGAGTGATGC+AGG | + | chr1_4:69555279-69555298 | Msa0181360:CDS | 40.0% | |
| !!! | GATGCAGGTTTTTTCCTTGA+TGG | + | chr1_4:69555294-69555313 | Msa0181360:CDS | 40.0% |
| ! | AAAAGAAAGAGGGCGCAAAA+GGG | - | chr1_4:69555395-69555414 | None:intergenic | 40.0% |
| ! | TTAGTTTGAACCACACCATG+AGG | + | chr1_4:69555427-69555446 | Msa0181360:intron | 40.0% |
| !! | TGAAAAAGTACCTCATGGTG+TGG | - | chr1_4:69555440-69555459 | None:intergenic | 40.0% |
| ! | CAAAAGTGTAGTTTCGTTGC+AGG | + | chr1_4:69555458-69555477 | Msa0181360:intron | 40.0% |
| CAGCGATCCCAAATGATATA+AGG | + | chr1_4:69555823-69555842 | Msa0181360:intron | 40.0% | |
| ! | GTTTTGTCTTGTGTAACAGG+GGG | + | chr1_4:69556195-69556214 | Msa0181360:intron | 40.0% |
| ! | CACTGGTGCAGTTTTTATTC+AGG | - | chr1_4:69556231-69556250 | None:intergenic | 40.0% |
| ! | ATCTAATCACGGTGGTGTCA+TGG | + | chr1_4:69546765-69546784 | Msa0181360:CDS | 45.0% |
| GTTAACAACGCACGTGAAAC+TGG | + | chr1_4:69546833-69546852 | Msa0181360:intron | 45.0% | |
| ATGGGTCAGTTATTCCGGTA+CGG | - | chr1_4:69546930-69546949 | None:intergenic | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | + | chr1_4:69547122-69547141 | Msa0181360:intron | 45.0% | |
| CCTCTATGCAAATGATACGC+CGG | - | chr1_4:69547225-69547244 | None:intergenic | 45.0% | |
| TTGCATAGAGGATTTGGACC+TGG | + | chr1_4:69547234-69547253 | Msa0181360:intron | 45.0% | |
| TTGGACCTGGTGAAGACAAT+TGG | + | chr1_4:69547247-69547266 | Msa0181360:CDS | 45.0% | |
| AGAAGCCAATTGTCTTCACC+AGG | - | chr1_4:69547255-69547274 | None:intergenic | 45.0% | |
| AAAGAGAGTAAGTACGGAGG+AGG | + | chr1_4:69547891-69547910 | Msa0181360:intron | 45.0% | |
| CATTTGAAAAAGTGGGGGGT+TGG | + | chr1_4:69548461-69548480 | Msa0181360:intron | 45.0% | |
| ACAATAGAGGCCGGATCTAA+TGG | + | chr1_4:69548812-69548831 | Msa0181360:intron | 45.0% | |
| CAATAGAGGCCGGATCTAAT+GGG | + | chr1_4:69548813-69548832 | Msa0181360:intron | 45.0% | |
| TGATCAACACCTATGAAGCC+TGG | + | chr1_4:69549682-69549701 | Msa0181360:intron | 45.0% | |
| ! | TTGGAGTATCCAGGCTTCAT+AGG | - | chr1_4:69549694-69549713 | None:intergenic | 45.0% |
| !! | GGAGTATCGGTATCCGATAT+GGG | - | chr1_4:69549729-69549748 | None:intergenic | 45.0% |
| !! | TGGAGTATCGGTATCCGATA+TGG | - | chr1_4:69549730-69549749 | None:intergenic | 45.0% |
| TATCGGATACCGATACTCCA+CGG | + | chr1_4:69549730-69549749 | Msa0181360:intron | 45.0% | |
| !! | TCCATAAGAAGTACTCCCTC+CGG | - | chr1_4:69550106-69550125 | None:intergenic | 45.0% |
| CTGAACATGTGGGATATCGA+GGG | - | chr1_4:69550203-69550222 | None:intergenic | 45.0% | |
| TCTGAACATGTGGGATATCG+AGG | - | chr1_4:69550204-69550223 | None:intergenic | 45.0% | |
| CATGTGGGATTCTGAACATG+TGG | - | chr1_4:69550214-69550233 | None:intergenic | 45.0% | |
| CCAACGACATGACAACATGT+GGG | - | chr1_4:69550229-69550248 | None:intergenic | 45.0% | |
| ACCAACGACATGACAACATG+TGG | - | chr1_4:69550230-69550249 | None:intergenic | 45.0% | |
| CAAACATCAACCCACACATG+TGG | - | chr1_4:69550278-69550297 | None:intergenic | 45.0% | |
| ! | TTTTATGGTACTTGCCAGGG+AGG | + | chr1_4:69551150-69551169 | Msa0181360:intron | 45.0% |
| !! | GTAATTTGTTGAACCCCTGC+GGG | - | chr1_4:69551220-69551239 | None:intergenic | 45.0% |
| !! | AGATAACGTGGTGTTGGTGT+TGG | - | chr1_4:69551571-69551590 | None:intergenic | 45.0% |
| TACCAACTGAGCTATGCTCA+CGG | - | chr1_4:69551845-69551864 | None:intergenic | 45.0% | |
| CCCTAAAAAAATGGTGCCCT+AGG | + | chr1_4:69552048-69552067 | Msa0181360:intron | 45.0% | |
| !! | AGCACTTTTTAACGCTCGAG+AGG | + | chr1_4:69552182-69552201 | Msa0181360:intron | 45.0% |
| !! | GCACTTTTTAACGCTCGAGA+GGG | + | chr1_4:69552183-69552202 | Msa0181360:intron | 45.0% |
| !! | CACTTTTTAACGCTCGAGAG+GGG | + | chr1_4:69552184-69552203 | Msa0181360:intron | 45.0% |
| AGCAAGTCTTTCTCGTGAGT+TGG | - | chr1_4:69552618-69552637 | None:intergenic | 45.0% | |
| ! | ACTCACGAGAAAGACTTGCT+AGG | + | chr1_4:69552618-69552637 | Msa0181360:intron | 45.0% |
| !! | CTCACGAGAAAGACTTGCTA+GGG | + | chr1_4:69552619-69552638 | Msa0181360:intron | 45.0% |
| ! | GTGGTCTTAAGTAAGACCTC+GGG | - | chr1_4:69552762-69552781 | None:intergenic | 45.0% |
| ! | GGTGGTCTTAAGTAAGACCT+CGG | - | chr1_4:69552763-69552782 | None:intergenic | 45.0% |
| ACTTTGTGTGAGATCTGGGT+TGG | + | chr1_4:69552876-69552895 | Msa0181360:intron | 45.0% | |
| TCTCCATTGTGGATGCTCTT+AGG | + | chr1_4:69552991-69553010 | Msa0181360:intron | 45.0% | |
| !! | GTTTTGGTAACTGATGCCTC+CGG | + | chr1_4:69553191-69553210 | Msa0181360:intron | 45.0% |
| AAATGTTAACAGGTGCTCCG+GGG | - | chr1_4:69553349-69553368 | None:intergenic | 45.0% | |
| GAAATGTTAACAGGTGCTCC+GGG | - | chr1_4:69553350-69553369 | None:intergenic | 45.0% | |
| GGAAATGTTAACAGGTGCTC+CGG | - | chr1_4:69553351-69553370 | None:intergenic | 45.0% | |
| ! | GTGGATTTTCTGTAAGTGGG+TGG | - | chr1_4:69554034-69554053 | None:intergenic | 45.0% |
| AAGTCTGGTACAACAGTCAC+AGG | - | chr1_4:69554172-69554191 | None:intergenic | 45.0% | |
| GTGAAGCTGAGATACTGTGA+TGG | + | chr1_4:69554240-69554259 | Msa0181360:CDS | 45.0% | |
| CGGTGTACCAACTTCATAAG+TGG | - | chr1_4:69554900-69554919 | None:intergenic | 45.0% | |
| GCAAGAAGAGATGAGCTCTT+CGG | - | chr1_4:69554920-69554939 | None:intergenic | 45.0% | |
| TGGTAGAAGGTCGGCAATAA+TGG | - | chr1_4:69555048-69555067 | None:intergenic | 45.0% | |
| ATTGCCGACCTTCTACCAAA+AGG | + | chr1_4:69555050-69555069 | Msa0181360:CDS | 45.0% | |
| ! | CGTGCCTTTCCTAAACCTTT+TGG | - | chr1_4:69555068-69555087 | None:intergenic | 45.0% |
| GAAGTTGTCACAGTGGTGAA+AGG | - | chr1_4:69555232-69555251 | None:intergenic | 45.0% | |
| ! | ACTTGGTGAAGTTGTCACAG+TGG | - | chr1_4:69555239-69555258 | None:intergenic | 45.0% |
| ! | CAAAAGAAAGAGGGCGCAAA+AGG | - | chr1_4:69555396-69555415 | None:intergenic | 45.0% |
| TGGATAAGAAGACATCGCAC+TGG | - | chr1_4:69556248-69556267 | None:intergenic | 45.0% | |
| !! | TTAAAAAAATTAAAAAGAAA+AGG | - | chr1_4:69548302-69548321 | None:intergenic | 5.0% |
| !!! | ATGTTTTTTTTTTTTTTTTA+TGG | + | chr1_4:69548956-69548975 | Msa0181360:intron | 5.0% |
| !!! | TGTTTTTTTTTTTTTTTTAT+GGG | + | chr1_4:69548957-69548976 | Msa0181360:intron | 5.0% |
| !!! | TTAACTAAAATAATTTTTTA+AGG | + | chr1_4:69549219-69549238 | Msa0181360:intron | 5.0% |
| !! | CATAATAATTATTAATTATT+TGG | + | chr1_4:69549279-69549298 | Msa0181360:intron | 5.0% |
| !! | TCATAATATTATTAATTATT+TGG | + | chr1_4:69549320-69549339 | Msa0181360:intron | 5.0% |
| !! | ACATATAATTAATAATATTA+TGG | - | chr1_4:69549365-69549384 | None:intergenic | 5.0% |
| !!! | AAAAATGAATAATAATTTTT+TGG | - | chr1_4:69550597-69550616 | None:intergenic | 5.0% |
| !!! | ATTTTTCAAATTTAAATTAT+AGG | + | chr1_4:69551403-69551422 | Msa0181360:intron | 5.0% |
| !! | AAAATAAATAAACAATATAT+GGG | - | chr1_4:69551450-69551469 | None:intergenic | 5.0% |
| !! | AAAAATAAATAAACAATATA+TGG | - | chr1_4:69551451-69551470 | None:intergenic | 5.0% |
| GTCAGTTATTCCGGTACGGA+GGG | - | chr1_4:69546926-69546945 | None:intergenic | 50.0% | |
| CCGGCGTATCATTTGCATAG+AGG | + | chr1_4:69547222-69547241 | Msa0181360:intron | 50.0% | |
| !! | AAAAGTGGGGGGTTGGTGTA+TGG | + | chr1_4:69548468-69548487 | Msa0181360:intron | 50.0% |
| !! | AAAGTGGGGGGTTGGTGTAT+GGG | + | chr1_4:69548469-69548488 | Msa0181360:intron | 50.0% |
| GGTGTGTATCCGTGGAGTAT+CGG | - | chr1_4:69549742-69549761 | None:intergenic | 50.0% | |
| !! | ACCGGAGGGAGTACTTCTTA+TGG | + | chr1_4:69550102-69550121 | Msa0181360:intron | 50.0% |
| CCCACATGTTGTCATGTCGT+TGG | + | chr1_4:69550226-69550245 | Msa0181360:intron | 50.0% | |
| !! | TAACGTGGTGTTGGTGTTGG+TGG | - | chr1_4:69551568-69551587 | None:intergenic | 50.0% |
| ACCAACTGAGCTATGCTCAC+GGG | - | chr1_4:69551844-69551863 | None:intergenic | 50.0% | |
| GTGAGCATAGCTCAGTTGGT+AGG | + | chr1_4:69551844-69551863 | Msa0181360:intron | 50.0% | |
| GCATTATTCTATGCAGGGGC+CGG | + | chr1_4:69551872-69551891 | Msa0181360:intron | 50.0% | |
| CATTATTCTATGCAGGGGCC+GGG | + | chr1_4:69551873-69551892 | Msa0181360:intron | 50.0% | |
| ATTATTCTATGCAGGGGCCG+GGG | + | chr1_4:69551874-69551893 | Msa0181360:intron | 50.0% | |
| TCTATGTCCCCTACCAACAG+GGG | - | chr1_4:69552105-69552124 | None:intergenic | 50.0% | |
| CTCTATGTCCCCTACCAACA+GGG | - | chr1_4:69552106-69552125 | None:intergenic | 50.0% | |
| GACATAGAGCGTGACCCAAA+TGG | + | chr1_4:69552206-69552225 | Msa0181360:intron | 50.0% | |
| !! | GTGCCTAAGAGCATCCACAA+TGG | - | chr1_4:69552997-69553016 | None:intergenic | 50.0% |
| TTTCTTAACCAGTGCTCCGG+AGG | - | chr1_4:69553210-69553229 | None:intergenic | 50.0% | |
| ! | AGGTTTAGGAAAGGCACGCA+AGG | + | chr1_4:69555070-69555089 | Msa0181360:CDS | 50.0% |
| GTTGTCACAGTGGTGAAAGG+TGG | - | chr1_4:69555229-69555248 | None:intergenic | 50.0% | |
| GGTCAGTTATTCCGGTACGG+AGG | - | chr1_4:69546927-69546946 | None:intergenic | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | + | chr1_4:69547125-69547144 | Msa0181360:intron | 55.0% | |
| TACCGGGACGGAGGTAGTAT+TGG | + | chr1_4:69547134-69547153 | Msa0181360:intron | 55.0% | |
| AGCCAATACTACCTCCGTCC+CGG | - | chr1_4:69547139-69547158 | None:intergenic | 55.0% | |
| !! | AAGTGGGGGGTTGGTGTATG+GGG | + | chr1_4:69548470-69548489 | Msa0181360:intron | 55.0% |
| ACTTCGTGGGTGTGTATCCG+TGG | - | chr1_4:69549750-69549769 | None:intergenic | 55.0% | |
| ACGTCCAACTCCCACATGTG+TGG | + | chr1_4:69550264-69550283 | Msa0181360:intron | 55.0% | |
| CGTCCAACTCCCACATGTGT+GGG | + | chr1_4:69550265-69550284 | Msa0181360:intron | 55.0% | |
| CAACCCACACATGTGGGAGT+TGG | - | chr1_4:69550271-69550290 | None:intergenic | 55.0% | |
| TATGGTACTTGCCAGGGAGG+TGG | + | chr1_4:69551153-69551172 | Msa0181360:intron | 55.0% | |
| TCCCGTGAGCATAGCTCAGT+TGG | + | chr1_4:69551840-69551859 | Msa0181360:intron | 55.0% | |
| GCTCTATGTCCCCTACCAAC+AGG | - | chr1_4:69552107-69552126 | None:intergenic | 55.0% | |
| ! | GCAGGGTCTTATAAGACCCG+AGG | + | chr1_4:69552743-69552762 | Msa0181360:intron | 55.0% |
| TTGCTTTCAGGCTGCTCAGC+AGG | + | chr1_4:69555195-69555214 | Msa0181360:CDS | 55.0% | |
| CAGTGCGCGCGCAAAAGTCT+AGG | - | chr1_4:69548605-69548624 | None:intergenic | 60.0% | |
| GTACTTGCCAGGGAGGTGGT+TGG | + | chr1_4:69551157-69551176 | Msa0181360:intron | 60.0% | |
| CATTGCACCAACCACCTCCC+TGG | - | chr1_4:69551167-69551186 | None:intergenic | 60.0% | |
| ! | TGGAGAGAGCACAAACCCGC+AGG | + | chr1_4:69551202-69551221 | Msa0181360:CDS | 60.0% |
| ! | GGAGAGAGCACAAACCCGCA+GGG | + | chr1_4:69551203-69551222 | Msa0181360:CDS | 60.0% |
| ! | GAGAGAGCACAAACCCGCAG+GGG | + | chr1_4:69551204-69551223 | Msa0181360:CDS | 60.0% |
| ATGTCCCCTACCAACAGGGG+CGG | - | chr1_4:69552102-69552121 | None:intergenic | 60.0% | |
| AACTGATGCCTCCGGAGCAC+TGG | + | chr1_4:69553199-69553218 | Msa0181360:intron | 60.0% | |
| CTTTCAGGCTGCTCAGCAGG+AGG | + | chr1_4:69555198-69555217 | Msa0181360:CDS | 60.0% | |
| GCTCGTGGGACGGCAACCTA+GGG | - | chr1_4:69552067-69552086 | None:intergenic | 65.0% | |
| ! | TTCAGGGTGGGCTCGTGGGA+CGG | - | chr1_4:69552077-69552096 | None:intergenic | 65.0% |
| ACCAACAGGGGCGGCCTTCA+GGG | - | chr1_4:69552093-69552112 | None:intergenic | 65.0% | |
| TACCAACAGGGGCGGCCTTC+AGG | - | chr1_4:69552094-69552113 | None:intergenic | 65.0% | |
| TGAAGGCCGCCCCTGTTGGT+AGG | + | chr1_4:69552093-69552112 | Msa0181360:intron | 65.0% | |
| GAAGGCCGCCCCTGTTGGTA+GGG | + | chr1_4:69552094-69552113 | Msa0181360:intron | 65.0% | |
| ! | AAGGCCGCCCCTGTTGGTAG+GGG | + | chr1_4:69552095-69552114 | Msa0181360:intron | 65.0% |
| TAACAGGTGCTCCGGGGCAC+TGG | - | chr1_4:69553343-69553362 | None:intergenic | 65.0% | |
| GGCTCGTGGGACGGCAACCT+AGG | - | chr1_4:69552068-69552087 | None:intergenic | 70.0% | |
| GTCCCACGAGCCCACCCTGA+AGG | + | chr1_4:69552076-69552095 | Msa0181360:intron | 70.0% | |
| ! | GGCCTTCAGGGTGGGCTCGT+GGG | - | chr1_4:69552081-69552100 | None:intergenic | 70.0% |
| ACAGGGGCGGCCTTCAGGGT+GGG | - | chr1_4:69552089-69552108 | None:intergenic | 70.0% | |
| AACAGGGGCGGCCTTCAGGG+TGG | - | chr1_4:69552090-69552109 | None:intergenic | 70.0% | |
| ACCCTGAAGGCCGCCCCTGT+TGG | + | chr1_4:69552089-69552108 | Msa0181360:intron | 70.0% | |
| ! | CGGCCTTCAGGGTGGGCTCG+TGG | - | chr1_4:69552082-69552101 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 69546707 | 69556273 | 69546707 | ID=Msa0181360;Name=Msa0181360 |
| chr1_4 | mRNA | 69546707 | 69556273 | 69546707 | ID=Msa0181360-mRNA-1;Parent=Msa0181360;Name=Msa0181360-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|0.71|0.5|8|0|223 |
| chr1_4 | exon | 69546707 | 69546845 | 69546707 | ID=Msa0181360-mRNA-1:exon:23093;Parent=Msa0181360-mRNA-1 |
| chr1_4 | exon | 69547244 | 69547284 | 69547244 | ID=Msa0181360-mRNA-1:exon:23094;Parent=Msa0181360-mRNA-1 |
| chr1_4 | exon | 69551168 | 69551297 | 69551168 | ID=Msa0181360-mRNA-1:exon:23095;Parent=Msa0181360-mRNA-1 |
| chr1_4 | exon | 69554220 | 69554299 | 69554220 | ID=Msa0181360-mRNA-1:exon:23096;Parent=Msa0181360-mRNA-1 |
| chr1_4 | exon | 69555005 | 69555091 | 69555005 | ID=Msa0181360-mRNA-1:exon:23097;Parent=Msa0181360-mRNA-1 |
| chr1_4 | exon | 69555192 | 69555316 | 69555192 | ID=Msa0181360-mRNA-1:exon:23098;Parent=Msa0181360-mRNA-1 |
| chr1_4 | exon | 69555419 | 69555425 | 69555419 | ID=Msa0181360-mRNA-1:exon:23099;Parent=Msa0181360-mRNA-1 |
| chr1_4 | exon | 69556214 | 69556273 | 69556214 | ID=Msa0181360-mRNA-1:exon:23100;Parent=Msa0181360-mRNA-1 |
| chr1_4 | CDS | 69546707 | 69546845 | 69546707 | ID=Msa0181360-mRNA-1:cds;Parent=Msa0181360-mRNA-1 |
| chr1_4 | CDS | 69547244 | 69547284 | 69547244 | ID=Msa0181360-mRNA-1:cds;Parent=Msa0181360-mRNA-1 |
| chr1_4 | CDS | 69551168 | 69551297 | 69551168 | ID=Msa0181360-mRNA-1:cds;Parent=Msa0181360-mRNA-1 |
| chr1_4 | CDS | 69554220 | 69554299 | 69554220 | ID=Msa0181360-mRNA-1:cds;Parent=Msa0181360-mRNA-1 |
| chr1_4 | CDS | 69555005 | 69555091 | 69555005 | ID=Msa0181360-mRNA-1:cds;Parent=Msa0181360-mRNA-1 |
| chr1_4 | CDS | 69555192 | 69555316 | 69555192 | ID=Msa0181360-mRNA-1:cds;Parent=Msa0181360-mRNA-1 |
| chr1_4 | CDS | 69555419 | 69555425 | 69555419 | ID=Msa0181360-mRNA-1:cds;Parent=Msa0181360-mRNA-1 |
| chr1_4 | CDS | 69556214 | 69556273 | 69556214 | ID=Msa0181360-mRNA-1:cds;Parent=Msa0181360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
