AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1425540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1425540 MtrunA17_Chr4g0006191 79.762 252 24 4 1 225 1 252 8.64e-133 374
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1425540 AT5G60540.1 56.522 253 79 5 4 225 3 255 2.12e-85 254

Find 67 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTCTGTTGAAGATAAAA+AGG 0.242812 tig0025867:-30077 Msa1425540:intron
AAAACTCCACGGAATGTTTC+AGG 0.263425 tig0025867:+30190 None:intergenic
AGGGATGATTAAGGAATTAA+TGG 0.307293 tig0025867:+32659 None:intergenic
CGAGTATCAGCTGTCAATTC+AGG 0.312317 tig0025867:+27835 None:intergenic
TTCACCACCAGGGATGATTA+AGG 0.317717 tig0025867:+32650 None:intergenic
GGCCCTACGTCAATAATTGC+TGG 0.323344 tig0025867:+30157 None:intergenic
ATGACTTTCTTTAACGATCA+TGG 0.357625 tig0025867:-27587 Msa1425540:three_prime_UTR
CGACCTTCCTATCTTTCAAT+AGG 0.362563 tig0025867:-27618 Msa1425540:exon
TTAATGGTGAGAAGCTGTTC+TGG 0.370042 tig0025867:+32675 None:intergenic
TTAATTTATAAAATTTCCTT+TGG 0.376440 tig0025867:-27556 Msa1425540:three_prime_UTR
TTATCAGTTTCCGGCTTTGC+GGG 0.378655 tig0025867:-31836 Msa1425540:intron
GCATAGTTATTTCTTGAAGA+TGG 0.389396 tig0025867:-27720 Msa1425540:CDS
TTTGCGGGAGTTTGTGCAAA+TGG 0.395917 tig0025867:-31821 Msa1425540:CDS
TGTTTCAGGACCACCTTCCT+TGG 0.406689 tig0025867:+30204 None:intergenic
TCAGCTAGGACTTGAACTTC+TGG 0.407051 tig0025867:+30136 None:intergenic
ACTGTGCACAGGAATTTCTT+TGG 0.415918 tig0025867:-31379 Msa1425540:CDS
TTATAATGACCAATTATCAA+TGG 0.416320 tig0025867:+27372 None:intergenic
GTGTGGTCCTATTGAAAGAT+AGG 0.418750 tig0025867:+27611 None:intergenic
CAGGAATTTCTTTGGCAGCC+AGG 0.427750 tig0025867:-31371 Msa1425540:intron
GTTGGTGTTCTCGCTTTACA+AGG 0.427789 tig0025867:-32861 Msa1425540:intron
TTATTTGTACTCACTTCTGC+TGG 0.435763 tig0025867:+27659 None:intergenic
TTTATCAGTTTCCGGCTTTG+CGG 0.436334 tig0025867:-31837 Msa1425540:intron
CATAGTTATTTCTTGAAGAT+GGG 0.447901 tig0025867:-27719 Msa1425540:CDS
TCTAAGATCTAACGATTCTC+AGG 0.450656 tig0025867:+27525 None:intergenic
TTAAGAAGATTGGGTGTGAA+AGG 0.461216 tig0025867:-32714 Msa1425540:CDS
TGGTGGTGAAAGCACCACTA+TGG 0.467220 tig0025867:-32637 Msa1425540:CDS
TGCACAAACTCCCGCAAAGC+CGG 0.472068 tig0025867:+31826 None:intergenic
GCCCTACGTCAATAATTGCT+GGG 0.475950 tig0025867:+30158 None:intergenic
TTGCGGGAGTTTGTGCAAAT+GGG 0.487279 tig0025867:-31820 Msa1425540:CDS
TCAGATTCAAAGCTTTGAAA+CGG 0.493128 tig0025867:-30251 Msa1425540:intron
CCTTCCTTGGAGACGAGCTC+AGG 0.500108 tig0025867:+30217 None:intergenic
ATTAATTCCTTAATCATCCC+TGG 0.517436 tig0025867:-32657 Msa1425540:CDS
GCTACTCGAGGCCTCTTCTC+CGG 0.529040 tig0025867:+27688 None:intergenic
TTGAAGATGGGAAATGTGAC+CGG 0.530497 tig0025867:-27707 Msa1425540:CDS
ATAGTGGTGCTTTCACCACC+AGG 0.540919 tig0025867:+32639 None:intergenic
TTCAGCGAGTTTAGCCATAG+TGG 0.547805 tig0025867:+32623 None:intergenic
GTTATAGTTGCTGTGCGACA+AGG 0.550991 tig0025867:-27883 Msa1425540:CDS
TTCTCAGGCAATGTTTCCAA+AGG 0.557807 tig0025867:+27540 None:intergenic
GTTCAATACACATTGCAGCT+TGG 0.560056 tig0025867:+27305 None:intergenic
CCTGAGCTCGTCTCCAAGGA+AGG 0.574869 tig0025867:-30217 Msa1425540:CDS
GGGAAATGTGACCGGAGAAG+AGG 0.575399 tig0025867:-27699 Msa1425540:CDS
GACTTGATTGCACTGTGCAC+AGG 0.576833 tig0025867:-31390 Msa1425540:CDS
CACTCCACACAATATGGCGG+TGG 0.577231 tig0025867:-32883 None:intergenic
CCCCAGCAATTATTGACGTA+GGG 0.577921 tig0025867:-30159 Msa1425540:CDS
ACTGGTGGACAAGAACTTGT+TGG 0.583767 tig0025867:-31415 Msa1425540:CDS
GGTGGACAAGAACTTGTTGG+TGG 0.593412 tig0025867:-31412 Msa1425540:CDS
ATGATTTCAGGACAGAAGAC+TGG 0.594853 tig0025867:-31433 Msa1425540:intron
TGTGCGACAAGGGAACATAC+TGG 0.599628 tig0025867:-27872 Msa1425540:CDS
AGTACCTGAGCTCGTCTCCA+AGG 0.600137 tig0025867:-30221 Msa1425540:CDS
CCACACAATATGGCGGTGGT+TGG 0.602082 tig0025867:-32879 None:intergenic
GCCACTCTGACAGAAGGTAC+AGG 0.603479 tig0025867:+30109 None:intergenic
TTATAGTTGCTGTGCGACAA+GGG 0.613272 tig0025867:-27882 Msa1425540:CDS
AAGGTACAGGATAATCAGCT+AGG 0.622940 tig0025867:+30122 None:intergenic
TGCTGGAACAACGCTACTCG+AGG 0.626381 tig0025867:+27676 None:intergenic
ACTCGCTGAATATTTCAACC+TGG 0.638716 tig0025867:-32610 Msa1425540:intron
GGTCCTATTGAAAGATAGGA+AGG 0.645223 tig0025867:+27615 None:intergenic
CCCTACGTCAATAATTGCTG+GGG 0.645849 tig0025867:+30159 None:intergenic
CGTTAAAGAAAGTCATAGTG+TGG 0.647164 tig0025867:+27594 None:intergenic
AATTGACAGCTGATACTCGA+TGG 0.647353 tig0025867:-27831 Msa1425540:intron
GAACTCGCCACTCTGACAGA+AGG 0.651056 tig0025867:+30103 None:intergenic
GAGCTCGTCTCCAAGGAAGG+TGG 0.657634 tig0025867:-30214 Msa1425540:CDS
TCCTGTACCTTCTGTCAGAG+TGG 0.657983 tig0025867:-30110 Msa1425540:CDS
GCCCCAGCAATTATTGACGT+AGG 0.663150 tig0025867:-30160 Msa1425540:CDS
ATTTCAGGACAGAAGACTGG+TGG 0.674164 tig0025867:-31430 Msa1425540:intron
GGTGGTCCTGAAACATTCCG+TGG 0.679473 tig0025867:-30196 Msa1425540:CDS
AATTCCTTAATCATCCCTGG+TGG 0.708340 tig0025867:-32654 Msa1425540:CDS
TAGTGGTGCTTTCACCACCA+GGG 0.725360 tig0025867:+32640 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+AGG + tig0025867:30717-30736 None:intergenic 0.0%
!!! ATTACTTATATTTTATCATA+TGG - tig0025867:28010-28029 Msa1425540:intron 10.0%
!!! TTTTATTTTGTTTCATTTAT+AGG - tig0025867:28907-28926 Msa1425540:intron 10.0%
!!! TTAAGTAATTGTTTTATATT+TGG + tig0025867:29544-29563 None:intergenic 10.0%
!! ACTATTAATAAAATATAAGA+TGG + tig0025867:30231-30250 None:intergenic 10.0%
!!! CTTATATTTTATTAATAGTA+TGG - tig0025867:30232-30251 Msa1425540:CDS 10.0%
!!! GTTATAGATAAATTATTTTT+AGG - tig0025867:31023-31042 Msa1425540:intron 10.0%
!! AATAAGTATATATACAAAAA+AGG + tig0025867:31127-31146 None:intergenic 10.0%
!!! AATATGTTTCTAAATATATA+TGG - tig0025867:32211-32230 Msa1425540:intron 10.0%
!! TTATAATGTTATATGATATA+TGG - tig0025867:32377-32396 Msa1425540:intron 10.0%
!! TTAATTTATAAAATTTCCTT+TGG - tig0025867:32593-32612 Msa1425540:intron 10.0%
!! TAAGTGATATAATATTTCTT+AGG - tig0025867:27919-27938 Msa1425540:intron 15.0%
!! ATAATCAATCAATAAATCAA+AGG + tig0025867:28957-28976 None:intergenic 15.0%
!! TAGTAAATATCTTATCATTT+AGG - tig0025867:29025-29044 Msa1425540:intron 15.0%
!! AAAACAATTACTTAAAGTTA+AGG - tig0025867:29549-29568 Msa1425540:intron 15.0%
!! AAACAATTACTTAAAGTTAA+GGG - tig0025867:29550-29569 Msa1425540:intron 15.0%
!! AGAAATTAAAAGAAGAATAA+AGG - tig0025867:30542-30561 Msa1425540:intron 15.0%
!! TGTTTAGATAAATTATTTGA+AGG - tig0025867:31052-31071 Msa1425540:intron 15.0%
!!! ATATAACATTATAACTTGTA+AGG + tig0025867:32371-32390 None:intergenic 15.0%
!!! AGAAAGTTTAATATTCTTTT+TGG - tig0025867:32647-32666 Msa1425540:CDS 15.0%
!!! GAAAGTTTAATATTCTTTTT+GGG - tig0025867:32648-32667 Msa1425540:CDS 15.0%
!! AGAAATGCATATTAATTCTA+AGG + tig0025867:27669-27688 None:intergenic 20.0%
!!! TAGGTTTTTGAATAATCTTA+TGG - tig0025867:27711-27730 Msa1425540:CDS 20.0%
!! TTAAAATCAACTGGAAAAAA+GGG - tig0025867:27836-27855 Msa1425540:CDS 20.0%
!!! GTGATATTTAACTATTTTGT+CGG + tig0025867:28141-28160 None:intergenic 20.0%
!! AAGGAAATAAAATATAAAGC+TGG + tig0025867:28860-28879 None:intergenic 20.0%
!! GTAAAAAAGAATAAGAGAAA+AGG + tig0025867:28879-28898 None:intergenic 20.0%
!! TGATAAGATATTTACTAACA+AGG + tig0025867:29022-29041 None:intergenic 20.0%
!!! TATTGTTCTAAATGAAATTC+CGG - tig0025867:29834-29853 Msa1425540:intron 20.0%
!!! TTGTAATTTTATAACTTCTC+AGG - tig0025867:30167-30186 Msa1425540:CDS 20.0%
!! AACCACTTAACTATAAAAAA+TGG - tig0025867:31744-31763 Msa1425540:intron 20.0%
!! TAGAAACATATTATATGTCA+TGG + tig0025867:32203-32222 None:intergenic 20.0%
!!! TTCAAATGTTATATTTTTGC+AGG - tig0025867:32407-32426 Msa1425540:intron 20.0%
!!! TTTTGGGATATAGTATATAT+TGG - tig0025867:32664-32683 Msa1425540:CDS 20.0%
!!! GTTTTTAATCCATTGATAAT+TGG - tig0025867:32768-32787 Msa1425540:intron 20.0%
!! TTATAATGACCAATTATCAA+TGG + tig0025867:32780-32799 None:intergenic 20.0%
! TTAGTAAAAGTGAATGAAGA+AGG + tig0025867:27388-27407 None:intergenic 25.0%
!!! TATTGCAGTTTTAAGAAGAT+TGG - tig0025867:27425-27444 Msa1425540:three_prime_UTR 25.0%
!!! ATTGCAGTTTTAAGAAGATT+GGG - tig0025867:27426-27445 Msa1425540:three_prime_UTR 25.0%
!!! AATTTGAGAGTATTTATACC+AGG + tig0025867:27560-27579 None:intergenic 25.0%
! ATTTAGTATAGTACAAATCC+TGG - tig0025867:27599-27618 Msa1425540:three_prime_UTR 25.0%
! TTTAGTATAGTACAAATCCT+GGG - tig0025867:27600-27619 Msa1425540:exon 25.0%
!!! CAGTTGATTTTAACTAGTTT+TGG + tig0025867:27829-27848 None:intergenic 25.0%
! CAAAACTAGTTAAAATCAAC+TGG - tig0025867:27827-27846 Msa1425540:intron 25.0%
! GTTAAAATCAACTGGAAAAA+AGG - tig0025867:27835-27854 Msa1425540:CDS 25.0%
!!! TTTCAGTTTTACTTTTTGAG+TGG - tig0025867:27862-27881 Msa1425540:CDS 25.0%
! GACAAAGTAGTTAAATACTA+TGG - tig0025867:28052-28071 Msa1425540:intron 25.0%
! AAAGTAGTTAAATACTATGG+TGG - tig0025867:28055-28074 Msa1425540:intron 25.0%
! TGTTTCAATTTATCAGTTTC+CGG - tig0025867:28304-28323 Msa1425540:intron 25.0%
! TTTGTAGAAAGTTACAAATG+CGG + tig0025867:28524-28543 None:intergenic 25.0%
! GTAACTTTCTACAAATATCA+TGG - tig0025867:28529-28548 Msa1425540:intron 25.0%
!!! AGAAACAAGGTTTTAAATTG+AGG + tig0025867:28585-28604 None:intergenic 25.0%
!! ATTCAACGTTATCCTTTTAT+TGG - tig0025867:28977-28996 Msa1425540:intron 25.0%
! TATTGGACTTAACCAATAAA+AGG + tig0025867:28992-29011 None:intergenic 25.0%
! ACTGCTAATAACTAACAAAA+GGG + tig0025867:29053-29072 None:intergenic 25.0%
! TACTGCTAATAACTAACAAA+AGG + tig0025867:29054-29073 None:intergenic 25.0%
!!! TTTACTTTTAGCAAAAGAGA+TGG + tig0025867:29605-29624 None:intergenic 25.0%
!! ATTGTTCTAAATGAAATTCC+GGG - tig0025867:29835-29854 Msa1425540:intron 25.0%
!!! AAAAAGGTTAGTTTTTGACA+CGG - tig0025867:30088-30107 Msa1425540:CDS 25.0%
! ACTGATCTTAAATTCACAAA+GGG + tig0025867:30136-30155 None:intergenic 25.0%
! TACTGATCTTAAATTCACAA+AGG + tig0025867:30137-30156 None:intergenic 25.0%
!! AATTTAAGATCAGTAGAGTT+CGG - tig0025867:30142-30161 Msa1425540:CDS 25.0%
! TGTTTGTGAATTGAAGTAAT+AGG - tig0025867:30257-30276 Msa1425540:intron 25.0%
! TTGAAGTAATAGGTTGTAAA+TGG - tig0025867:30267-30286 Msa1425540:intron 25.0%
!!! TCAACTGATCAGTTATTTTT+GGG + tig0025867:30678-30697 None:intergenic 25.0%
! AAAAAGGAAATTTCCACAAT+AGG + tig0025867:31111-31130 None:intergenic 25.0%
! GTATATATACTTATTCTCCT+TGG - tig0025867:31132-31151 Msa1425540:intron 25.0%
!! GTAACGGTAAACATTTTTAT+GGG + tig0025867:31185-31204 None:intergenic 25.0%
! TATAAGACTGGAAATTTACA+AGG + tig0025867:31207-31226 None:intergenic 25.0%
!! AAATTTCCAGTCTTATATGT+TGG - tig0025867:31210-31229 Msa1425540:intron 25.0%
! TACTGATATACTTCACTATT+AGG - tig0025867:31258-31277 Msa1425540:intron 25.0%
! TTACAGCATATATACTACAT+TGG + tig0025867:31536-31555 None:intergenic 25.0%
! ATTTCTTAAACTAGCAAGAA+TGG - tig0025867:31559-31578 Msa1425540:intron 25.0%
! TTTAGATTAAATGGTACATG+TGG + tig0025867:31642-31661 None:intergenic 25.0%
! GCAAACAAGTTTAGATTAAA+TGG + tig0025867:31651-31670 None:intergenic 25.0%
!!! GACCATTTTTTATAGTTAAG+TGG + tig0025867:31749-31768 None:intergenic 25.0%
!! TAGTTCTTAACTTGAAAAGA+TGG - tig0025867:31803-31822 Msa1425540:intron 25.0%
! AACTAAGTTATTATATCCAG+TGG + tig0025867:32161-32180 None:intergenic 25.0%
! CTAAATATATATGGTATGAC+AGG - tig0025867:32220-32239 Msa1425540:intron 25.0%
!! TATAACTTGTAAGGTTCAAA+CGG + tig0025867:32362-32381 None:intergenic 25.0%
! ATGTTATATGATATATGGAG+TGG - tig0025867:32382-32401 Msa1425540:intron 25.0%
!!! CATAGTTATTTCTTGAAGAT+GGG - tig0025867:32430-32449 Msa1425540:intron 25.0%
! GAAACAAATAAAAATGACAC+AGG + tig0025867:32816-32835 None:intergenic 25.0%
AGGGATGATTAAGGAATTAA+TGG + tig0025867:27493-27512 None:intergenic 30.0%
ATTAATTCCTTAATCATCCC+TGG - tig0025867:27492-27511 Msa1425540:three_prime_UTR 30.0%
ACATTTGATCGAAGAATTGT+AGG - tig0025867:27692-27711 Msa1425540:CDS 30.0%
!!! AACTAGTTTTGGACTCAATT+TGG + tig0025867:27818-27837 None:intergenic 30.0%
GACAAGTATAGACTTACTTT+AGG - tig0025867:27981-28000 Msa1425540:intron 30.0%
AGTATAGACTTACTTTAGGT+AGG - tig0025867:27985-28004 Msa1425540:intron 30.0%
GACAGAATAGTCGAATATTA+TGG - tig0025867:28098-28117 Msa1425540:intron 30.0%
AGAATAGTCGAATATTATGG+TGG - tig0025867:28101-28120 Msa1425540:intron 30.0%
ACAATTACAATATGCAGACA+CGG + tig0025867:28490-28509 None:intergenic 30.0%
CAAATGACAAACATGATTTC+AGG - tig0025867:28704-28723 Msa1425540:intron 30.0%
ACTAACAAGGAAAGAGATAT+TGG + tig0025867:29009-29028 None:intergenic 30.0%
GGTTTCTTCTAACTTAAACA+AGG + tig0025867:29219-29238 None:intergenic 30.0%
GTGAATCTTATCAGCTATAA+TGG + tig0025867:29644-29663 None:intergenic 30.0%
! AGATTCACAGAGTTTTTATG+TGG - tig0025867:29656-29675 Msa1425540:intron 30.0%
! ATTGTTCTAAATAACCCACT+TGG - tig0025867:29695-29714 Msa1425540:intron 30.0%
! TTGTTCTAAATAACCCACTT+GGG - tig0025867:29696-29715 Msa1425540:intron 30.0%
ATCTGAGTAAACATGTCATT+TGG + tig0025867:29884-29903 None:intergenic 30.0%
!! TCAGATTCAAAGCTTTGAAA+CGG - tig0025867:29898-29917 Msa1425540:intron 30.0%
TTCCTCTGTTGAAGATAAAA+AGG - tig0025867:30072-30091 Msa1425540:intron 30.0%
! AACCTTTTTATCTTCAACAG+AGG + tig0025867:30077-30096 None:intergenic 30.0%
TGATCTTAAATTCACAAAGG+GGG + tig0025867:30134-30153 None:intergenic 30.0%
CTGATCTTAAATTCACAAAG+GGG + tig0025867:30135-30154 None:intergenic 30.0%
!! TGTAAATGGTGATTTGTTTC+AGG - tig0025867:30281-30300 Msa1425540:intron 30.0%
!! GTAAATGGTGATTTGTTTCA+GGG - tig0025867:30282-30301 Msa1425540:intron 30.0%
!!! TCTTTTGATAATGTCCTTCT+CGG - tig0025867:30389-30408 Msa1425540:intron 30.0%
ACAGCATAAAGAATGAACTA+GGG - tig0025867:30420-30439 Msa1425540:intron 30.0%
ATAAAGAATGAACTAGGGAT+AGG - tig0025867:30425-30444 Msa1425540:intron 30.0%
AACGAACATAACATAACAAC+TGG + tig0025867:30462-30481 None:intergenic 30.0%
CATTATTACTCTTTCTAACC+TGG + tig0025867:30623-30642 None:intergenic 30.0%
!! GTCAACTGATCAGTTATTTT+TGG + tig0025867:30679-30698 None:intergenic 30.0%
AGAGAAGTAGTTGTATTTGT+TGG + tig0025867:30826-30845 None:intergenic 30.0%
TCTAACACATTAACTAACCA+AGG - tig0025867:30843-30862 Msa1425540:intron 30.0%
CTATAATCCCAATAGAAACT+TGG + tig0025867:30956-30975 None:intergenic 30.0%
! GAAAAGAGTGTGTAGAAAAA+TGG - tig0025867:30994-31013 Msa1425540:intron 30.0%
!!! TGTTTTGATCTTTATTTGCC+TGG - tig0025867:31081-31100 Msa1425540:intron 30.0%
TATACTTATTCTCCTTGGAA+AGG - tig0025867:31137-31156 Msa1425540:intron 30.0%
AAAAATAAGGAACCTTTCCA+AGG + tig0025867:31152-31171 None:intergenic 30.0%
!! GGTAACGGTAAACATTTTTA+TGG + tig0025867:31186-31205 None:intergenic 30.0%
ACTGGAAATTTACAAGGTAA+CGG + tig0025867:31201-31220 None:intergenic 30.0%
! GGTGATTGACTATATCTTTT+TGG - tig0025867:31319-31338 Msa1425540:intron 30.0%
TAGCAGAATCACAAGTTTAT+AGG - tig0025867:31397-31416 Msa1425540:CDS 30.0%
! AAGTTTATAGGATTAGTGCA+AGG - tig0025867:31409-31428 Msa1425540:CDS 30.0%
TAGAAAACATAGTAACCACT+AGG + tig0025867:31461-31480 None:intergenic 30.0%
! AGTGGTTACTATGTTTTCTA+TGG - tig0025867:31461-31480 Msa1425540:intron 30.0%
! TAAACTAGCAAGAATGGATT+TGG - tig0025867:31565-31584 Msa1425540:intron 30.0%
! AATCTAAACTTGTTTGCTTG+AGG - tig0025867:31654-31673 Msa1425540:intron 30.0%
! ATCTAAACTTGTTTGCTTGA+GGG - tig0025867:31655-31674 Msa1425540:intron 30.0%
TTATAATGCACTGTTACGTA+CGG - tig0025867:31715-31734 Msa1425540:intron 30.0%
AGACTAGAAAAACTATGATC+AGG + tig0025867:31853-31872 None:intergenic 30.0%
TCTAGTACAAAAAGACAAGT+AGG + tig0025867:32093-32112 None:intergenic 30.0%
! TACTTGTCTTTTTGTACTAG+AGG - tig0025867:32092-32111 Msa1425540:intron 30.0%
GAGAATACAAATACGTAACA+CGG - tig0025867:32120-32139 Msa1425540:intron 30.0%
TTATTATATCCAGTGGCAAT+AGG + tig0025867:32154-32173 None:intergenic 30.0%
!! GCATAGTTATTTCTTGAAGA+TGG - tig0025867:32429-32448 Msa1425540:intron 30.0%
ATGACTTTCTTTAACGATCA+TGG - tig0025867:32562-32581 Msa1425540:intron 30.0%
TTAAGAAGATTGGGTGTGAA+AGG - tig0025867:27435-27454 Msa1425540:three_prime_UTR 35.0%
AAACACAAATGATTGATCCC+AGG + tig0025867:27620-27639 None:intergenic 35.0%
!!! CAGTTTTACTTTTTGAGTGG+CGG - tig0025867:27865-27884 Msa1425540:CDS 35.0%
GTAAAGTATGTTTGCAGTGT+CGG - tig0025867:28174-28193 Msa1425540:intron 35.0%
TAAAGTATGTTTGCAGTGTC+GGG - tig0025867:28175-28194 Msa1425540:intron 35.0%
!!! CTCTGCAAGGTTTTAATTTG+TGG - tig0025867:28419-28438 Msa1425540:intron 35.0%
GTGTCTGCATATTGTAATTG+TGG - tig0025867:28489-28508 Msa1425540:intron 35.0%
GAAAAGAGAAGAGAGAAACA+AGG + tig0025867:28598-28617 None:intergenic 35.0%
ATTTCTCAAACCCAACCTAA+GGG + tig0025867:28623-28642 None:intergenic 35.0%
TATTTCTCAAACCCAACCTA+AGG + tig0025867:28624-28643 None:intergenic 35.0%
! TCGTTAGATTTTTGTGTGAC+AGG + tig0025867:28670-28689 None:intergenic 35.0%
CGTCAAATACATGAATTACC+TGG + tig0025867:28799-28818 None:intergenic 35.0%
GGTAATTCATGTATTTGACG+TGG - tig0025867:28799-28818 Msa1425540:intron 35.0%
ACTAATCTCTCGAACTTTGT+GGG - tig0025867:29119-29138 Msa1425540:intron 35.0%
ATCGTATCAGAACTTAGAAG+AGG - tig0025867:29332-29351 Msa1425540:intron 35.0%
GACATGGAATAATTCTTCCT+AGG + tig0025867:29405-29424 None:intergenic 35.0%
TTGACAAAATAACCTCTGCA+AGG + tig0025867:29577-29596 None:intergenic 35.0%
! TCTTATCAGCTATAATGGAG+AGG + tig0025867:29639-29658 None:intergenic 35.0%
CTAAATTAGCCCACCTAAAT+TGG + tig0025867:29796-29815 None:intergenic 35.0%
TCCAAAATTATATCCTCTCC+CGG + tig0025867:29856-29875 None:intergenic 35.0%
AAAACATTATGCACAGAGCA+CGG - tig0025867:30346-30365 Msa1425540:intron 35.0%
!!! CTTTTGATAATGTCCTTCTC+GGG - tig0025867:30390-30409 Msa1425540:intron 35.0%
GACAGCATAAAGAATGAACT+AGG - tig0025867:30419-30438 Msa1425540:intron 35.0%
!!! ACTGATCAGTTATTTTTGGG+TGG + tig0025867:30675-30694 None:intergenic 35.0%
TTATTAGCGGTATATGCTAG+AGG + tig0025867:30906-30925 None:intergenic 35.0%
ATATACCGCTAATAAAGCCA+CGG - tig0025867:30911-30930 Msa1425540:intron 35.0%
TCCAACTTCCAAGTTTCTAT+TGG - tig0025867:30945-30964 Msa1425540:intron 35.0%
CCAACTTCCAAGTTTCTATT+GGG - tig0025867:30946-30965 Msa1425540:intron 35.0%
! ACACACTCTTTTCATTTGCT+CGG + tig0025867:30987-31006 None:intergenic 35.0%
ATGAGACCAACATATAAGAC+TGG + tig0025867:31219-31238 None:intergenic 35.0%
CTTAGTTGTCTATACTGACA+TGG - tig0025867:31281-31300 Msa1425540:intron 35.0%
TTGTCTATACTGACATGGAT+CGG - tig0025867:31286-31305 Msa1425540:intron 35.0%
ATTCTGCTACACATATACGA+TGG + tig0025867:31386-31405 None:intergenic 35.0%
! TTGAATTTTGTTCTGCCTAG+TGG - tig0025867:31443-31462 Msa1425540:intron 35.0%
! GTTTTCCAATTCTTCAACGA+GGG + tig0025867:31506-31525 None:intergenic 35.0%
! AGTTTTCCAATTCTTCAACG+AGG + tig0025867:31507-31526 None:intergenic 35.0%
TCTAGACTCCAGTAAAATTC+AGG + tig0025867:31598-31617 None:intergenic 35.0%
! TGAATTTTACTGGAGTCTAG+AGG - tig0025867:31597-31616 Msa1425540:intron 35.0%
! TCTAAACTTGTTTGCTTGAG+GGG - tig0025867:31656-31675 Msa1425540:intron 35.0%
AACTTGAAAAGATGGATGCT+TGG - tig0025867:31811-31830 Msa1425540:intron 35.0%
AAAAGATGGATGCTTGGATT+TGG - tig0025867:31817-31836 Msa1425540:CDS 35.0%
AAATCCCAGCAAAGAATGTT+GGG + tig0025867:31936-31955 None:intergenic 35.0%
! TTTGTCTTATTGTGCATGAG+AGG + tig0025867:31972-31991 None:intergenic 35.0%
AAGTTTAGAGAGTGATAGAG+AGG - tig0025867:32018-32037 Msa1425540:intron 35.0%
!! GAGAGGATGTAAAGAGTATT+TGG - tig0025867:32035-32054 Msa1425540:intron 35.0%
!! GGATGTAAAGAGTATTTGGA+AGG - tig0025867:32039-32058 Msa1425540:intron 35.0%
!! TAAAGAGTATTTGGAAGGAG+TGG - tig0025867:32044-32063 Msa1425540:intron 35.0%
TTATTTGTACTCACTTCTGC+TGG + tig0025867:32493-32512 None:intergenic 35.0%
CGTTAAAGAAAGTCATAGTG+TGG + tig0025867:32558-32577 None:intergenic 35.0%
! TCTAAGATCTAACGATTCTC+AGG + tig0025867:32627-32646 None:intergenic 35.0%
TCTTTCAACGAACACATAGC+AGG - tig0025867:27312-27331 Msa1425540:three_prime_UTR 40.0%
TTAATGGTGAGAAGCTGTTC+TGG + tig0025867:27477-27496 None:intergenic 40.0%
AATTCCTTAATCATCCCTGG+TGG - tig0025867:27495-27514 Msa1425540:three_prime_UTR 40.0%
ACTCGCTGAATATTTCAACC+TGG - tig0025867:27539-27558 Msa1425540:three_prime_UTR 40.0%
GCTCACTCAAGCTTAAAGTT+TGG + tig0025867:27788-27807 None:intergenic 40.0%
TTAAGCTTGAGTGAGCTTCA+AGG - tig0025867:27792-27811 Msa1425540:intron 40.0%
CACTTATATTAGAGCATGCC+AGG + tig0025867:27905-27924 None:intergenic 40.0%
ACCAGAATCGTGACTTGATT+CGG + tig0025867:28250-28269 None:intergenic 40.0%
!! CACGATTCTGGTATTGATGA+TGG - tig0025867:28258-28277 Msa1425540:intron 40.0%
TTTATCAGTTTCCGGCTTTG+CGG - tig0025867:28312-28331 Msa1425540:intron 40.0%
ATGATTTCAGGACAGAAGAC+TGG - tig0025867:28716-28735 Msa1425540:intron 40.0%
ACTGTGCACAGGAATTTCTT+TGG - tig0025867:28770-28789 Msa1425540:intron 40.0%
! ATTTGACGTGGCTTCTTTTG+TGG - tig0025867:28811-28830 Msa1425540:intron 40.0%
! TTTGACGTGGCTTCTTTTGT+GGG - tig0025867:28812-28831 Msa1425540:intron 40.0%
GACTAATCTCTCGAACTTTG+TGG - tig0025867:29118-29137 Msa1425540:intron 40.0%
ACTTAGAAGAGGCTATGTGA+AGG - tig0025867:29343-29362 Msa1425540:intron 40.0%
ATTCTTCCTAGGACCTATAG+TGG + tig0025867:29394-29413 None:intergenic 40.0%
GTCACAGGTTTAGTTAGACA+TGG + tig0025867:29421-29440 None:intergenic 40.0%
GTCTAACTAAACCTGTGACT+AGG - tig0025867:29422-29441 Msa1425540:intron 40.0%
ACAGTTATGAGCCTTTGTGT+AGG + tig0025867:29449-29468 None:intergenic 40.0%
CATATTTCCTGCTCGATTCT+TGG - tig0025867:29491-29510 Msa1425540:intron 40.0%
TCTAAATAACCCACTTGGGT+TGG - tig0025867:29700-29719 Msa1425540:intron 40.0%
TCTAAATGAAATTCCGGGAG+AGG - tig0025867:29840-29859 Msa1425540:intron 40.0%
! TCCGGGAGAGGATATAATTT+TGG - tig0025867:29852-29871 Msa1425540:intron 40.0%
AAAACTCCACGGAATGTTTC+AGG + tig0025867:29962-29981 None:intergenic 40.0%
AAGGTACAGGATAATCAGCT+AGG + tig0025867:30030-30049 None:intergenic 40.0%
AAGAATGAACTAGGGATAGG+AGG - tig0025867:30428-30447 Msa1425540:intron 40.0%
TCGTTAGTGTGATATCCACA+AGG - tig0025867:30484-30503 Msa1425540:intron 40.0%
CGTTAGTGTGATATCCACAA+GGG - tig0025867:30485-30504 Msa1425540:intron 40.0%
CTTCAATTCAGGGAGAAATG+GGG + tig0025867:30594-30613 None:intergenic 40.0%
CCTTCAATTCAGGGAGAAAT+GGG + tig0025867:30595-30614 None:intergenic 40.0%
TCCTTCAATTCAGGGAGAAA+TGG + tig0025867:30596-30615 None:intergenic 40.0%
CTGGATTGTCCTTCAATTCA+GGG + tig0025867:30604-30623 None:intergenic 40.0%
AATGATCTCACAACTTCCTG+AGG - tig0025867:30639-30658 Msa1425540:intron 40.0%
TATACCGCTAATAAAGCCAC+GGG - tig0025867:30912-30931 Msa1425540:intron 40.0%
CCCAATAGAAACTTGGAAGT+TGG + tig0025867:30949-30968 None:intergenic 40.0%
ATTTCCACAATAGGACATCC+AGG + tig0025867:31102-31121 None:intergenic 40.0%
! GGGCTGCTTTCTCAAAAATA+AGG + tig0025867:31165-31184 None:intergenic 40.0%
TAGTTCCCTCGTTGAAGAAT+TGG - tig0025867:31498-31517 Msa1425540:intron 40.0%
! GACGTACACCTGAATTTTAC+TGG - tig0025867:31587-31606 Msa1425540:intron 40.0%
GATGAGAAAGATAGAGAGAC+TGG + tig0025867:31876-31895 None:intergenic 40.0%
AAAGAATGTTGGGAAGGAGA+GGG + tig0025867:31926-31945 None:intergenic 40.0%
CAAATCCCAGCAAAGAATGT+TGG + tig0025867:31937-31956 None:intergenic 40.0%
CAACATTCTTTGCTGGGATT+TGG - tig0025867:31935-31954 Msa1425540:intron 40.0%
TCTTATTGTGCATGAGAGGA+AGG + tig0025867:31968-31987 None:intergenic 40.0%
AATTGACAGCTGATACTCGA+TGG - tig0025867:32318-32337 Msa1425540:intron 40.0%
TTGAAGATGGGAAATGTGAC+CGG - tig0025867:32442-32461 Msa1425540:intron 40.0%
CGACCTTCCTATCTTTCAAT+AGG - tig0025867:32531-32550 Msa1425540:intron 40.0%
GGTCCTATTGAAAGATAGGA+AGG + tig0025867:32537-32556 None:intergenic 40.0%
GTGTGGTCCTATTGAAAGAT+AGG + tig0025867:32541-32560 None:intergenic 40.0%
TTCTCAGGCAATGTTTCCAA+AGG + tig0025867:32612-32631 None:intergenic 40.0%
GTTCAATACACATTGCAGCT+TGG + tig0025867:32847-32866 None:intergenic 40.0%
! GTTGGTGTTCTCGCTTTACA+AGG - tig0025867:27288-27307 Msa1425540:three_prime_UTR 45.0%
TTCACCACCAGGGATGATTA+AGG + tig0025867:27502-27521 None:intergenic 45.0%
TTCAGCGAGTTTAGCCATAG+TGG + tig0025867:27529-27548 None:intergenic 45.0%
GCATGAACTGCATGTGTGTT+TGG - tig0025867:27752-27771 Msa1425540:intron 45.0%
TCCGAATCAAGTCACGATTC+TGG - tig0025867:28246-28265 Msa1425540:intron 45.0%
TTATCAGTTTCCGGCTTTGC+GGG - tig0025867:28313-28332 Msa1425540:intron 45.0%
TTTGCGGGAGTTTGTGCAAA+TGG - tig0025867:28328-28347 Msa1425540:intron 45.0%
TTGCGGGAGTTTGTGCAAAT+GGG - tig0025867:28329-28348 Msa1425540:intron 45.0%
TGCAAATGGGAAAGCCAGTT+TGG - tig0025867:28342-28361 Msa1425540:intron 45.0%
GCAAATGGGAAAGCCAGTTT+GGG - tig0025867:28343-28362 Msa1425540:intron 45.0%
CAAATGGGAAAGCCAGTTTG+GGG - tig0025867:28344-28363 Msa1425540:intron 45.0%
CAGGAAAATTAGTCCTGCAC+AGG + tig0025867:28372-28391 None:intergenic 45.0%
! CTGTGCAGGACTAATTTTCC+TGG - tig0025867:28370-28389 Msa1425540:intron 45.0%
!! CAACCCACCTGTAGCTTTAT+CGG + tig0025867:28396-28415 None:intergenic 45.0%
! AGCCACAACATCGTGGATTT+TGG - tig0025867:28459-28478 Msa1425540:intron 45.0%
! GCCACAACATCGTGGATTTT+GGG - tig0025867:28460-28479 Msa1425540:intron 45.0%
ACCCAAAATCCACGATGTTG+TGG + tig0025867:28464-28483 None:intergenic 45.0%
! CGTAATTTCAAGTGCGACTG+TGG - tig0025867:28559-28578 Msa1425540:intron 45.0%
! CTCTTCTCTTTTCCACCCTT+AGG - tig0025867:28605-28624 Msa1425540:intron 45.0%
! TCTCTTTTCCACCCTTAGGT+TGG - tig0025867:28609-28628 Msa1425540:intron 45.0%
! CTCTTTTCCACCCTTAGGTT+GGG - tig0025867:28610-28629 Msa1425540:intron 45.0%
ATTTCAGGACAGAAGACTGG+TGG - tig0025867:28719-28738 Msa1425540:intron 45.0%
! ACTGGTGGACAAGAACTTGT+TGG - tig0025867:28734-28753 Msa1425540:intron 45.0%
! TTGACGTGGCTTCTTTTGTG+GGG - tig0025867:28813-28832 Msa1425540:intron 45.0%
GAACTTTGTGGGACCTAAGT+GGG - tig0025867:29130-29149 Msa1425540:intron 45.0%
CGCAGTTGTATGCACAAGTT+CGG - tig0025867:29179-29198 Msa1425540:intron 45.0%
GCAGTTGTATGCACAAGTTC+GGG - tig0025867:29180-29199 Msa1425540:intron 45.0%
TCTAACTTAAACAAGGCCCC+AGG + tig0025867:29212-29231 None:intergenic 45.0%
CGTCTCATCTAAGAGGTCTT+GGG - tig0025867:29243-29262 Msa1425540:intron 45.0%
AGAAGAGGCTATGTGAAGGA+TGG - tig0025867:29347-29366 Msa1425540:intron 45.0%
GAAGAGGCTATGTGAAGGAT+GGG - tig0025867:29348-29367 Msa1425540:intron 45.0%
CTGTACATCCAGTCCACTAT+AGG - tig0025867:29378-29397 Msa1425540:intron 45.0%
TTTGTGTAGGACCTAGTCAC+AGG + tig0025867:29436-29455 None:intergenic 45.0%
TGTGACTAGGTCCTACACAA+AGG - tig0025867:29435-29454 Msa1425540:intron 45.0%
AAAGTTAAGGGTCCTTGCAG+AGG - tig0025867:29562-29581 Msa1425540:intron 45.0%
! ATTCTCTCCGGTGCCAATTT+AGG - tig0025867:29780-29799 Msa1425540:intron 45.0%
GGGCACGAATAAAAACTCCA+CGG + tig0025867:29973-29992 None:intergenic 45.0%
CCCTACGTCAATAATTGCTG+GGG + tig0025867:29993-30012 None:intergenic 45.0%
CCCCAGCAATTATTGACGTA+GGG - tig0025867:29990-30009 Msa1425540:intron 45.0%
GCCCTACGTCAATAATTGCT+GGG + tig0025867:29994-30013 None:intergenic 45.0%
TCAGCTAGGACTTGAACTTC+TGG + tig0025867:30016-30035 None:intergenic 45.0%
GGGCTTAATATCAACCCTTG+TGG + tig0025867:30502-30521 None:intergenic 45.0%
!! CAAGGGTTGATATTAAGCCC+TGG - tig0025867:30502-30521 Msa1425540:intron 45.0%
! GGTTGATATTAAGCCCTGGT+AGG - tig0025867:30506-30525 Msa1425540:intron 45.0%
TGATATTAAGCCCTGGTAGG+AGG - tig0025867:30509-30528 Msa1425540:intron 45.0%
GATATTAAGCCCTGGTAGGA+GGG - tig0025867:30510-30529 Msa1425540:intron 45.0%
ATATTAAGCCCTGGTAGGAG+GGG - tig0025867:30511-30530 Msa1425540:intron 45.0%
AGAATAATCCCCTCCTACCA+GGG + tig0025867:30522-30541 None:intergenic 45.0%
TAGAATAATCCCCTCCTACC+AGG + tig0025867:30523-30542 None:intergenic 45.0%
CCCATTTCTCCCTGAATTGA+AGG - tig0025867:30592-30611 Msa1425540:intron 45.0%
CCTGGATTGTCCTTCAATTC+AGG + tig0025867:30605-30624 None:intergenic 45.0%
CCTGAATTGAAGGACAATCC+AGG - tig0025867:30602-30621 Msa1425540:intron 45.0%
CTAACTGCAATAGCAGAGGT+AGG + tig0025867:30795-30814 None:intergenic 45.0%
CTCACTAACTGCAATAGCAG+AGG + tig0025867:30799-30818 None:intergenic 45.0%
AAAACCAACTCAGCAAGCCT+TGG + tig0025867:30863-30882 None:intergenic 45.0%
TTTGCCTGGATGTCCTATTG+TGG - tig0025867:31095-31114 Msa1425540:intron 45.0%
TACTGACATGGATCGGAACA+TGG - tig0025867:31293-31312 Msa1425540:intron 45.0%
ACTGACATGGATCGGAACAT+GGG - tig0025867:31294-31313 Msa1425540:intron 45.0%
!! CTTGAGGGGCATCTATGTTT+GGG - tig0025867:31670-31689 Msa1425540:intron 45.0%
CAAAGAATGTTGGGAAGGAG+AGG + tig0025867:31927-31946 None:intergenic 45.0%
TCCTTCCCAACATTCTTTGC+TGG - tig0025867:31928-31947 Msa1425540:intron 45.0%
CCTTCCCAACATTCTTTGCT+GGG - tig0025867:31929-31948 Msa1425540:intron 45.0%
CAAGTAGGAGAGCAGACATA+TGG + tig0025867:32078-32097 None:intergenic 45.0%
CGAGTATCAGCTGTCAATTC+AGG + tig0025867:32317-32336 None:intergenic 45.0%
TAGTGGTGCTTTCACCACCA+GGG + tig0025867:27512-27531 None:intergenic 50.0%
ATAGTGGTGCTTTCACCACC+AGG + tig0025867:27513-27532 None:intergenic 50.0%
!! TGGTGGTGAAAGCACCACTA+TGG - tig0025867:27512-27531 Msa1425540:three_prime_UTR 50.0%
GCGGCTCTCAATTGAAAACC+TGG - tig0025867:27884-27903 Msa1425540:CDS 50.0%
TTCCTGGCCGATAAAGCTAC+AGG - tig0025867:28386-28405 Msa1425540:intron 50.0%
TGGCCGATAAAGCTACAGGT+GGG - tig0025867:28390-28409 Msa1425540:intron 50.0%
!! AGGTGGGTTGTTTCTCTGCA+AGG - tig0025867:28406-28425 Msa1425540:intron 50.0%
CAGTTACAGCCACAACATCG+TGG - tig0025867:28452-28471 Msa1425540:intron 50.0%
TCTCAAACCCAACCTAAGGG+TGG + tig0025867:28620-28639 None:intergenic 50.0%
!! GGTGGACAAGAACTTGTTGG+TGG - tig0025867:28737-28756 Msa1425540:intron 50.0%
GACTTGATTGCACTGTGCAC+AGG - tig0025867:28759-28778 Msa1425540:intron 50.0%
CAGGAATTTCTTTGGCAGCC+AGG - tig0025867:28778-28797 Msa1425540:intron 50.0%
CGAACTTTGTGGGACCTAAG+TGG - tig0025867:29129-29148 Msa1425540:intron 50.0%
! TGAGTGTTTTCCGCCCACTT+AGG + tig0025867:29146-29165 None:intergenic 50.0%
! ACAAGTTCGGGTTCGAACCT+GGG - tig0025867:29192-29211 Msa1425540:intron 50.0%
ACCTCTTAGATGAGACGCAC+GGG + tig0025867:29240-29259 None:intergenic 50.0%
GACCTCTTAGATGAGACGCA+CGG + tig0025867:29241-29260 None:intergenic 50.0%
GCGTCTCATCTAAGAGGTCT+TGG - tig0025867:29242-29261 Msa1425540:intron 50.0%
TCCAGTCCACTATAGGTCCT+AGG - tig0025867:29385-29404 Msa1425540:intron 50.0%
!! TCCTAGGACCTATAGTGGAC+TGG + tig0025867:29389-29408 None:intergenic 50.0%
TCCTGCTCGATTCTTGGTTC+AGG - tig0025867:29497-29516 Msa1425540:intron 50.0%
ACCTGAACCAAGAATCGAGC+AGG + tig0025867:29501-29520 None:intergenic 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG - tig0025867:29714-29733 Msa1425540:intron 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG - tig0025867:29719-29738 Msa1425540:intron 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG - tig0025867:29720-29739 Msa1425540:intron 50.0%
GATCCCAAGCCAATACCACT+AGG + tig0025867:29726-29745 None:intergenic 50.0%
!! AGTGGTATTGGCTTGGGATC+TGG - tig0025867:29726-29745 Msa1425540:intron 50.0%
!! GTGGTATTGGCTTGGGATCT+GGG - tig0025867:29727-29746 Msa1425540:intron 50.0%
GTCTCAGGTTCGATTCTCTC+CGG - tig0025867:29768-29787 Msa1425540:intron 50.0%
! TCTCCGGTGCCAATTTAGGT+GGG - tig0025867:29784-29803 Msa1425540:intron 50.0%
TAGCCCACCTAAATTGGCAC+CGG + tig0025867:29790-29809 None:intergenic 50.0%
TGTTTCAGGACCACCTTCCT+TGG + tig0025867:29948-29967 None:intergenic 50.0%
GCCCCAGCAATTATTGACGT+AGG - tig0025867:29989-30008 Msa1425540:intron 50.0%
GGCCCTACGTCAATAATTGC+TGG + tig0025867:29995-30014 None:intergenic 50.0%
TCCTGTACCTTCTGTCAGAG+TGG - tig0025867:30039-30058 Msa1425540:intron 50.0%
GAGCACGGTTGAATACATGC+TGG - tig0025867:30361-30380 Msa1425540:intron 50.0%
GGGTGGAATAGATAAGCCTC+AGG + tig0025867:30658-30677 None:intergenic 50.0%
!! CTAACCAAGGCTTGCTGAGT+TGG - tig0025867:30856-30875 Msa1425540:intron 50.0%
!! ACAGCCCGTGGCTTTATTAG+CGG + tig0025867:30919-30938 None:intergenic 50.0%
!! GCTTGAGGGGCATCTATGTT+TGG - tig0025867:31669-31688 Msa1425540:intron 50.0%
!! AGGGGCATCTATGTTTGGGT+CGG - tig0025867:31674-31693 Msa1425540:intron 50.0%
CCCAGCAAAGAATGTTGGGA+AGG + tig0025867:31932-31951 None:intergenic 50.0%
TTGTGCATGAGAGGAAGGAG+AGG + tig0025867:31963-31982 None:intergenic 50.0%
! GACTGACTTCCTATTGCCAC+TGG - tig0025867:32142-32161 Msa1425540:intron 50.0%
TGCACAAACTCCCGCAAAGC+CGG + tig0025867:28326-28345 None:intergenic 55.0%
!! CACCTGTAGCTTTATCGGCC+AGG + tig0025867:28391-28410 None:intergenic 55.0%
CTGGCCGATAAAGCTACAGG+TGG - tig0025867:28389-28408 Msa1425540:intron 55.0%
TGCTGCGTGCGGAGGATATT+CGG + tig0025867:29093-29112 None:intergenic 55.0%
CTTTGTGGGACCTAAGTGGG+CGG - tig0025867:29133-29152 Msa1425540:intron 55.0%
! CACAAGTTCGGGTTCGAACC+TGG - tig0025867:29191-29210 Msa1425540:intron 55.0%
! CAAGTTCGGGTTCGAACCTG+GGG - tig0025867:29193-29212 Msa1425540:intron 55.0%
ACCCGTGCGTCTCATCTAAG+AGG - tig0025867:29236-29255 Msa1425540:intron 55.0%
ACCACTAGGCCAACCCAAGT+GGG + tig0025867:29712-29731 None:intergenic 55.0%
TACCACTAGGCCAACCCAAG+TGG + tig0025867:29713-29732 None:intergenic 55.0%
TCGAACCTGAGACCTCAACG+AGG + tig0025867:29761-29780 None:intergenic 55.0%
! CTCTCCGGTGCCAATTTAGG+TGG - tig0025867:29783-29802 Msa1425540:intron 55.0%
AGTACCTGAGCTCGTCTCCA+AGG - tig0025867:29928-29947 Msa1425540:intron 55.0%
GGTGGTCCTGAAACATTCCG+TGG - tig0025867:29953-29972 Msa1425540:intron 55.0%
! GCCACTCTGACAGAAGGTAC+AGG + tig0025867:30043-30062 None:intergenic 55.0%
GAACTCGCCACTCTGACAGA+AGG + tig0025867:30049-30068 None:intergenic 55.0%
TGCTGTCAAGAAGCCCGAGA+AGG + tig0025867:30406-30425 None:intergenic 55.0%
GTTGGAAGCAATACAGCCCG+TGG + tig0025867:30931-30950 None:intergenic 55.0%
ACATGGATCGGAACATGGGC+AGG - tig0025867:31298-31317 Msa1425540:intron 55.0%
! GGGGCATCTATGTTTGGGTC+GGG - tig0025867:31675-31694 Msa1425540:intron 55.0%
GGGAAATGTGACCGGAGAAG+AGG - tig0025867:32450-32469 Msa1425540:intron 55.0%
TGCTGGAACAACGCTACTCG+AGG + tig0025867:32476-32495 None:intergenic 55.0%
CCTGCACAGGTTCCCCAAAC+TGG + tig0025867:28359-28378 None:intergenic 60.0%
CCAGTTTGGGGAACCTGTGC+AGG - tig0025867:28356-28375 Msa1425540:intron 60.0%
ATATCCTCCGCACGCAGCAG+CGG - tig0025867:29094-29113 Msa1425540:intron 60.0%
TTAGTCTCCGCTGCTGCGTG+CGG + tig0025867:29104-29123 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG - tig0025867:29708-29727 Msa1425540:intron 60.0%
! TGGGAGTGTGCTCCTCGTTG+AGG - tig0025867:29746-29765 Msa1425540:intron 60.0%
GTGCTCCTCGTTGAGGTCTC+AGG - tig0025867:29753-29772 Msa1425540:intron 60.0%
CCTTCCTTGGAGACGAGCTC+AGG + tig0025867:29935-29954 None:intergenic 60.0%
CCTGAGCTCGTCTCCAAGGA+AGG - tig0025867:29932-29951 Msa1425540:intron 60.0%
GAGCTCGTCTCCAAGGAAGG+TGG - tig0025867:29935-29954 Msa1425540:intron 60.0%
GCTACTCGAGGCCTCTTCTC+CGG + tig0025867:32464-32483 None:intergenic 60.0%
GTCTCCGCTGCTGCGTGCGG+AGG + tig0025867:29101-29120 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0025867 gene 27279 32892 27279 ID=Msa1425540;Name=Msa1425540
tig0025867 mRNA 27279 32892 27279 ID=Msa1425540-mRNA-1;Parent=Msa1425540;Name=Msa1425540-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.5|0.57|1|0.66|0.71|7|340|225
tig0025867 exon 27279 27742 27279 ID=Msa1425540-mRNA-1:exon:4374;Parent=Msa1425540-mRNA-1
tig0025867 exon 27832 27929 27832 ID=Msa1425540-mRNA-1:exon:4373;Parent=Msa1425540-mRNA-1
tig0025867 exon 30078 30261 30078 ID=Msa1425540-mRNA-1:exon:4372;Parent=Msa1425540-mRNA-1
tig0025867 exon 31372 31445 31372 ID=Msa1425540-mRNA-1:exon:4371;Parent=Msa1425540-mRNA-1
tig0025867 exon 31813 31851 31813 ID=Msa1425540-mRNA-1:exon:4370;Parent=Msa1425540-mRNA-1
tig0025867 exon 32611 32738 32611 ID=Msa1425540-mRNA-1:exon:4369;Parent=Msa1425540-mRNA-1
tig0025867 exon 32862 32892 32862 ID=Msa1425540-mRNA-1:exon:4368;Parent=Msa1425540-mRNA-1
tig0025867 CDS 32862 32892 32862 ID=Msa1425540-mRNA-1:cds;Parent=Msa1425540-mRNA-1
tig0025867 CDS 32611 32738 32611 ID=Msa1425540-mRNA-1:cds;Parent=Msa1425540-mRNA-1
tig0025867 CDS 31813 31851 31813 ID=Msa1425540-mRNA-1:cds;Parent=Msa1425540-mRNA-1
tig0025867 CDS 31372 31445 31372 ID=Msa1425540-mRNA-1:cds;Parent=Msa1425540-mRNA-1
tig0025867 CDS 30078 30261 30078 ID=Msa1425540-mRNA-1:cds;Parent=Msa1425540-mRNA-1
tig0025867 CDS 27832 27929 27832 ID=Msa1425540-mRNA-1:cds;Parent=Msa1425540-mRNA-1
tig0025867 CDS 27619 27742 27619 ID=Msa1425540-mRNA-1:cds;Parent=Msa1425540-mRNA-1
tig0025867 three_prime_UTR 27279 27618 27279 ID=Msa1425540-mRNA-1:three_prime_utr;Parent=Msa1425540-mRNA-1
Gene Sequence

>Msa1425540

ATGGCGGTGGTTGGTGTTCTCGCTTTACAAGTTTTAAGAAGATTGGGTGTGAAAGGAGTTGAGATTCGAAAACCAGAACAGCTTCTCACCATTAATTCCTTAATCATCCCTGGTGGTGAAAGCACCACTATGGCTAAACTCGCTGAATATTTCAACCTGTTTCCGGCTTTGCGGGAGTTTGTGCAAATGGGAAAGCCAGACAGAAGACTGGTGGACAAGAACTTGTTGGTGGACTTGATTGCACTGTGCACAGGAATTTCTTTGGCAGCCAGCTTTGAAACGGAGCTTGCAGTACCTGAGCTCGTCTCCAAGGAAGGTGGTCCTGAAACATTCCGTGGAGTTTTTATTCGTGCCCCAGCAATTATTGACGTAGGGCCAGAAGTTCAAGTCCTAGCTGATTATCCTGTACCTTCTGTCAGAGTGGCGAGTTCTGATTCCTCTGTTGAAGATAAAAAGGAGAATGCTGATGAAAAAAGCAAAGTTATAGTTGCTGTGCGACAAGGGAACATACTGGCGACTGCTTTTCATCCTGAATTGACAGCTGATACTCGATGGCATAGTTATTTCTTGAAGATGGGAAATGTGACCGGAGAAGAGGCCTCGAGTAGCGTTGTTCCAGCAGAAGTGAGTACAAATAATAAGCTACAATCACAGAACGACCTTCCTATCTTTCAATAG

Protein sequence

>Msa1425540

MAVVGVLALQVLRRLGVKGVEIRKPEQLLTINSLIIPGGESTTMAKLAEYFNLFPALREFVQMGKPDRRLVDKNLLVDLIALCTGISLAASFETELAVPELVSKEGGPETFRGVFIRAPAIIDVGPEVQVLADYPVPSVRVASSDSSVEDKKENADEKSKVIVAVRQGNILATAFHPELTADTRWHSYFLKMGNVTGEEASSSVVPAEVSTNNKLQSQNDLPIFQ*