AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0568680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568680 MtrunA17_Chr8g0383571 99.773 441 1 0 1 441 1 441 0.0 899
Msa0568680 MtrunA17_Chr8g0383531 97.717 438 10 0 4 441 1 438 0.0 875
Msa0568680 MtrunA17_Chr5g0431161 48.352 91 47 0 101 191 35 125 3.80e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568680 AT5G09900.2 81.633 441 80 1 1 440 1 441 0.0 732
Msa0568680 AT5G09900.1 81.179 441 82 1 1 440 1 441 0.0 728
Msa0568680 AT5G64760.2 78.685 441 93 1 1 440 1 441 0.0 700
Msa0568680 AT5G64760.1 78.458 441 94 1 1 440 1 441 0.0 697
Msa0568680 AT5G64760.3 80.048 421 83 1 21 440 1 421 0.0 682
Msa0568680 AT5G09900.3 79.070 344 71 1 1 343 1 344 0.0 548

Find 110 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACCTTCAAAGCTGCTTTA+TGG 0.134030 4_1:-70299465 None:intergenic
AAACAACGATCTGATCATTT+AGG 0.167639 4_1:-70295026 None:intergenic
TATTTGAGTATATGTAAATT+TGG 0.193812 4_1:+70300086 Msa0568680:three_prime_UTR
GACCATATTATCACCTTCTT+TGG 0.222140 4_1:-70296459 None:intergenic
GTGGTTGGTTGAGTGAAGTT+TGG 0.229314 4_1:-70294742 None:intergenic
TGAAATTTGCCGCTGCTATA+AGG 0.251024 4_1:+70298288 Msa0568680:CDS
TGGTTGGTTGAGTGAAGTTT+GGG 0.272537 4_1:-70294741 None:intergenic
CATTGCTATCCTTTGCTGTT+TGG 0.295822 4_1:-70299354 None:intergenic
AACAACGATCTGATCATTTA+GGG 0.304111 4_1:-70295025 None:intergenic
CAAGAAACTTGCCAAGATTA+AGG 0.314974 4_1:+70296006 Msa0568680:CDS
TCTTATCAGGTGGAAACTTT+TGG 0.318210 4_1:+70296183 Msa0568680:intron
TCATCCAATGGACAGCTCTT+TGG 0.322854 4_1:+70298719 Msa0568680:CDS
TGCCTCCTCAATATGTGATA+TGG 0.330493 4_1:+70299665 Msa0568680:three_prime_UTR
CATCCAATGGACAGCTCTTT+GGG 0.333432 4_1:+70298720 Msa0568680:CDS
CCCCTGTTCTTCCTTAATCT+TGG 0.337481 4_1:-70296017 None:intergenic
ATACCTTACCACCGACTTAC+CGG 0.339321 4_1:+70299874 Msa0568680:three_prime_UTR
ACCATATTATCACCTTCTTT+GGG 0.346638 4_1:-70296458 None:intergenic
AGGATAACATACTGGAAGTT+TGG 0.347252 4_1:-70298577 None:intergenic
GTTCTTCATATTCTTTCGTT+TGG 0.365406 4_1:+70299949 Msa0568680:three_prime_UTR
TATGGACTGAAGTTGCCTTA+TGG 0.366194 4_1:+70299683 Msa0568680:three_prime_UTR
ATGGACTGAAGTTGCCTTAT+GGG 0.381336 4_1:+70299684 Msa0568680:three_prime_UTR
TAACTCATGGGCAGCAAACT+TGG 0.387347 4_1:+70299384 Msa0568680:CDS
TGCCAAGATTAAGGAAGAAC+AGG 0.388343 4_1:+70296015 Msa0568680:CDS
TTTATTACGAGCTAATGATT+AGG 0.390801 4_1:+70296528 Msa0568680:CDS
ATTCGACATAGATGCATCTA+AGG 0.393010 4_1:+70296424 Msa0568680:CDS
TAGATCAAACATTATCATAA+AGG 0.400969 4_1:-70300048 None:intergenic
GCCCAAAGAAGGTGATAATA+TGG 0.427248 4_1:+70296457 Msa0568680:CDS
TTCAAGATAATCATTGTTGT+GGG 0.433017 4_1:-70298269 None:intergenic
GGTCCATAAAGCAGCTTTGA+AGG 0.436788 4_1:+70299462 Msa0568680:CDS
TGAGAAGCATCTGTCTGATA+TGG 0.444884 4_1:+70299276 Msa0568680:CDS
TCAATACGAGTTTCAATATC+CGG 0.449985 4_1:-70295802 None:intergenic
ATGTTGAGATTGAGAGAGCT+AGG 0.451064 4_1:+70295978 Msa0568680:CDS
GCATCTATGTCGAATACTCT+TGG 0.459620 4_1:-70296416 None:intergenic
TTTCAAGATAATCATTGTTG+TGG 0.472189 4_1:-70298270 None:intergenic
ATCTACCCTGAAACGCATAA+TGG 0.475270 4_1:-70299774 None:intergenic
AACTACATACAAGACCGTTT+AGG 0.477075 4_1:-70299904 None:intergenic
TATGGTTGTTACCAAGGCTC+TGG 0.489637 4_1:+70299294 Msa0568680:CDS
TCGATTGTGCCTAGACCGCC+AGG 0.490883 4_1:+70296355 Msa0568680:CDS
TTCGTTTCTGTAGGCAAACA+TGG 0.492410 4_1:+70294870 Msa0568680:intron
TAGGATCTTGTCCGGTAAGT+CGG 0.493217 4_1:-70299885 None:intergenic
ATCGAAGATTACCATGGTTG+TGG 0.500341 4_1:-70294761 None:intergenic
ACGGTCTTGTATGTAGTTAG+TGG 0.500674 4_1:+70299909 Msa0568680:three_prime_UTR
GGAGAAACTGCTTGATCTTG+TGG 0.501917 4_1:+70299405 Msa0568680:CDS
CAAGGTGGAATTTAAAAGAC+TGG 0.502902 4_1:-70298530 None:intergenic
TTTGACAATGAGATGGCCTC+TGG 0.504799 4_1:+70298760 Msa0568680:CDS
AATCTTTGCAACCAGAGCCT+TGG 0.507062 4_1:-70299305 None:intergenic
GCAAAGATTGACAGACCAAT+GGG 0.508334 4_1:+70299319 Msa0568680:CDS
TTCAAATGAGCATCCCCATA+AGG 0.512098 4_1:-70299698 None:intergenic
TTGTATCAAAATACTATGCA+AGG 0.512334 4_1:+70298948 Msa0568680:CDS
GCAATGATGTACTTAACTCA+TGG 0.517832 4_1:+70299371 Msa0568680:CDS
TTACCGGACAAGATCCTAAA+CGG 0.522572 4_1:+70299890 Msa0568680:three_prime_UTR
ACATTGAACAGTGTATCTGC+TGG 0.524074 4_1:+70295835 Msa0568680:CDS
GGACATAATCCTGGCGGTCT+AGG 0.525396 4_1:-70296364 None:intergenic
GCAGCTTTGAAGGTTTAAGA+AGG 0.527483 4_1:+70299472 Msa0568680:exon
TCTCCCAAAGAGCTGTCCAT+TGG 0.527502 4_1:-70298723 None:intergenic
CAAAGCTGCTTTATGGACCA+TGG 0.531327 4_1:-70299458 None:intergenic
ACGACGCGGTCAGCTCAAGC+AGG 0.533278 4_1:+70295056 Msa0568680:CDS
TTTGTGCACGGACATAATCC+TGG 0.535226 4_1:-70296373 None:intergenic
AGACCGTTTAGGATCTTGTC+CGG 0.536612 4_1:-70299893 None:intergenic
GTCTGATATGGTTGTTACCA+AGG 0.537128 4_1:+70299288 Msa0568680:CDS
TGTAACAGCTATGGTACAGC+AGG 0.546142 4_1:+70295756 Msa0568680:CDS
TGAAATGTTGCTCACTGTGT+TGG 0.548481 4_1:+70299717 Msa0568680:three_prime_UTR
AGTAGAGACGGAATATCTGC+AGG 0.554698 4_1:-70296491 None:intergenic
CCTACAGGAATAAAATCAGC+AGG 0.555937 4_1:-70298343 None:intergenic
TGGAAACAGACTATTCCCAT+TGG 0.557174 4_1:-70299334 None:intergenic
TGAGATTGAGAGAGCTAGGT+TGG 0.557330 4_1:+70295982 Msa0568680:CDS
TTCTTGAGAGTATTTGTGCA+CGG 0.563823 4_1:-70296385 None:intergenic
TTTATTGTGCAAGTGCAGCT+TGG 0.565928 4_1:+70300008 Msa0568680:three_prime_UTR
CATTGAACAGTGTATCTGCT+GGG 0.568762 4_1:+70295836 Msa0568680:CDS
TGTCCGGTAAGTCGGTGGTA+AGG 0.572093 4_1:-70299877 None:intergenic
TGCAAAGATTGACAGACCAA+TGG 0.572504 4_1:+70299318 Msa0568680:CDS
GTTGGTTGAGTGAAGTTTGG+GGG 0.574269 4_1:-70294739 None:intergenic
GAGGAAAATATGTTGGTGCT+TGG 0.574826 4_1:+70298480 Msa0568680:CDS
GGTTGGTTGAGTGAAGTTTG+GGG 0.576504 4_1:-70294740 None:intergenic
GAGAAACAAATGCGTCTCGC+CGG 0.580321 4_1:+70294931 Msa0568680:CDS
CGTCTCGCCGGCGAAATAGT+CGG 0.582458 4_1:+70294943 Msa0568680:CDS
ATCACAGGCTGTAACAGCTA+TGG 0.585065 4_1:+70295747 Msa0568680:intron
CAATGATGTACTTAACTCAT+GGG 0.587731 4_1:+70299372 Msa0568680:CDS
TCTAGTGCCGACTATTTCGC+CGG 0.590784 4_1:-70294950 None:intergenic
TTTAAAAGACTGGACTGCAT+CGG 0.598019 4_1:-70298520 None:intergenic
TGATTTGATGCAAGAAATTG+CGG 0.598896 4_1:+70296057 Msa0568680:CDS
AGATCCTGAGGAAAATATGT+TGG 0.600984 4_1:+70298473 Msa0568680:intron
AGATAGATTTCTATCCTCCA+AGG 0.603704 4_1:-70298548 None:intergenic
TTTGAAGCAGCTGGTCACCA+TGG 0.604172 4_1:+70298693 Msa0568680:CDS
TGTTTCAACTCTAGTAGAGA+CGG 0.606167 4_1:-70296503 None:intergenic
CATATATTGCCTTATAGCAG+CGG 0.613022 4_1:-70298297 None:intergenic
GCAATATATTGACGAGACAC+CGG 0.613740 4_1:+70295783 Msa0568680:CDS
AAGATTACCATGGTTGTGGT+TGG 0.614101 4_1:-70294757 None:intergenic
TCAGTCCATATCACATATTG+AGG 0.615157 4_1:-70299670 None:intergenic
AGGTGATAATATGGTCGAAG+AGG 0.618539 4_1:+70296466 Msa0568680:CDS
GAACGAGTTTGACAATGAGA+TGG 0.619618 4_1:+70298753 Msa0568680:CDS
CACTCAACCAACCACAACCA+TGG 0.619704 4_1:+70294750 Msa0568680:exon
GCCAAGATTAAGGAAGAACA+GGG 0.626902 4_1:+70296016 Msa0568680:CDS
GTTCTTGCATACAGATCCTG+AGG 0.628194 4_1:+70298461 Msa0568680:intron
AATTTCTTGCATCAAATCAG+CGG 0.629438 4_1:-70296053 None:intergenic
TCACCATGGAAGTCATCCAA+TGG 0.630891 4_1:+70298707 Msa0568680:CDS
GAACAGTGTATCTGCTGGGA+AGG 0.631990 4_1:+70295840 Msa0568680:CDS
AGTCTGTTTCCAAACAGCAA+AGG 0.634017 4_1:+70299345 Msa0568680:CDS
CTGGACTGCATCGGTGAATG+TGG 0.634478 4_1:-70298511 None:intergenic
GTCCATATCACATATTGAGG+AGG 0.639905 4_1:-70299667 None:intergenic
TCAAATACACAAGGAAACCA+TGG 0.640379 4_1:+70299441 Msa0568680:CDS
TGGACTGAAGTTGCCTTATG+GGG 0.647179 4_1:+70299685 Msa0568680:three_prime_UTR
AGAACAGGGGCTCATAGCTG+AGG 0.659386 4_1:+70296030 Msa0568680:CDS
GATCTTGTCCGGTAAGTCGG+TGG 0.660906 4_1:-70299882 None:intergenic
TGTTGCTCACTGTGTTGGTG+AGG 0.668735 4_1:+70299722 Msa0568680:three_prime_UTR
GAGCTGTCATCAAATACACA+AGG 0.670564 4_1:+70299432 Msa0568680:CDS
TAGATTTCTATCCTCCAAGG+TGG 0.684299 4_1:-70298545 None:intergenic
TGTCCATTGGATGACTTCCA+TGG 0.689019 4_1:-70298710 None:intergenic
CCAAGATTAAGGAAGAACAG+GGG 0.758007 4_1:+70296017 Msa0568680:CDS
GTGCACGGACATAATCCTGG+CGG 0.759607 4_1:-70296370 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAAAATGATTTAATTTT+TGG - chr4_1:70297916-70297935 None:intergenic 10.0%
!! TAAATTTATTTATTTGTGTT+TGG + chr4_1:70297969-70297988 Msa0568680:intron 10.0%
!! AAATTTATTTATTTGTGTTT+GGG + chr4_1:70297970-70297989 Msa0568680:intron 10.0%
!!! TAAAAAAATAAAAAAGTGTA+AGG - chr4_1:70298856-70298875 None:intergenic 10.0%
!!! TTAGTTTATTTCTTTTTTAA+AGG + chr4_1:70299214-70299233 Msa0568680:intron 10.0%
!!! TAGTTTATTTCTTTTTTAAA+GGG + chr4_1:70299215-70299234 Msa0568680:intron 10.0%
!! AAGTTCATAAAATTACTAAT+AGG - chr4_1:70295285-70295304 None:intergenic 15.0%
!! AATTATACAACAACAATATA+TGG - chr4_1:70295671-70295690 None:intergenic 15.0%
!! AAAAACAATAAAAATACAGA+AGG - chr4_1:70296110-70296129 None:intergenic 15.0%
!!! TTCTGTATTTTTATTGTTTT+TGG + chr4_1:70296109-70296128 Msa0568680:intron 15.0%
!! GTTAATATTTAAAAACTTGT+TGG - chr4_1:70297103-70297122 None:intergenic 15.0%
!! AAAAAAGAAATAAACTAAGA+TGG - chr4_1:70299212-70299231 None:intergenic 15.0%
!!! AGTTTATTTCTTTTTTAAAG+GGG + chr4_1:70299216-70299235 Msa0568680:intron 15.0%
!! AATATTACTTCAGAAATAAA+TGG - chr4_1:70299598-70299617 None:intergenic 15.0%
!! TATTTGAGTATATGTAAATT+TGG + chr4_1:70300086-70300105 Msa0568680:three_prime_UTR 15.0%
!! TTTCAATTGTAGATTTCTTA+TGG + chr4_1:70295180-70295199 Msa0568680:intron 20.0%
!! AATAAGTTGTTTATCCAAAA+AGG - chr4_1:70295386-70295405 None:intergenic 20.0%
!!! CTTAATTAAGTTTTATCTGT+AGG + chr4_1:70295454-70295473 Msa0568680:intron 20.0%
!!! AAAACATATGTCCTTTAAAA+TGG - chr4_1:70295924-70295943 None:intergenic 20.0%
!! AACTTATATCATTAGTAACA+AGG - chr4_1:70297187-70297206 None:intergenic 20.0%
!!! AAGTTCAAACTCATTTTATA+TGG - chr4_1:70297551-70297570 None:intergenic 20.0%
!!! ATTTTTAAGAACAGTATCAA+TGG - chr4_1:70297636-70297655 None:intergenic 20.0%
!!! ATTTTTTTTTTTCCTTATGC+TGG + chr4_1:70298218-70298237 Msa0568680:intron 20.0%
!! TACTATAAGATTCTGTTATA+CGG + chr4_1:70298400-70298419 Msa0568680:intron 20.0%
!! ATATTTGAACATGATTAGAA+AGG - chr4_1:70298619-70298638 None:intergenic 20.0%
!!! ATAAAAAAGTGTAAGGAATT+CGG - chr4_1:70298849-70298868 None:intergenic 20.0%
!!! AGTATGTAATTTTTGAAGAA+TGG + chr4_1:70299561-70299580 Msa0568680:intron 20.0%
!! TTAATCATAATGCTTATTTC+TGG + chr4_1:70299632-70299651 Msa0568680:intron 20.0%
!! TGCACAATAAAATTAAAAAG+TGG - chr4_1:70299999-70300018 None:intergenic 20.0%
!! TAGATCAAACATTATCATAA+AGG - chr4_1:70300051-70300070 None:intergenic 20.0%
! AACGAATTGAAAAGCAATTA+TGG - chr4_1:70294856-70294875 None:intergenic 25.0%
!!! TTGGGTTTTATTTAATCGAT+TGG + chr4_1:70295114-70295133 Msa0568680:intron 25.0%
!!! GTTTTATTTAATCGATTGGT+AGG + chr4_1:70295118-70295137 Msa0568680:intron 25.0%
! GAGAAGATAATAAAACAGAA+TGG - chr4_1:70295889-70295908 None:intergenic 25.0%
!! CTTAGCATTATCCATTTTAA+AGG + chr4_1:70295910-70295929 Msa0568680:intron 25.0%
! ACACAATACAACATACAAAT+TGG - chr4_1:70295948-70295967 None:intergenic 25.0%
!! TTTCTAGTAAGTTACTGATT+TGG + chr4_1:70296305-70296324 Msa0568680:intron 25.0%
!!! TTCTAGTAAGTTACTGATTT+GGG + chr4_1:70296306-70296325 Msa0568680:intron 25.0%
! TCTTCTACGTTAAATTGTTT+AGG + chr4_1:70296331-70296350 Msa0568680:intron 25.0%
! TTTATTACGAGCTAATGATT+AGG + chr4_1:70296528-70296547 Msa0568680:CDS 25.0%
!! ATGTCCTATACTGTTAATTT+TGG + chr4_1:70296793-70296812 Msa0568680:intron 25.0%
! GATTCCAAAATTAACAGTAT+AGG - chr4_1:70296800-70296819 None:intergenic 25.0%
!!! ATTTTGGAATCTGAAAGATA+AGG + chr4_1:70296809-70296828 Msa0568680:intron 25.0%
! CAAATATAAATAACTGCAGT+CGG - chr4_1:70296857-70296876 None:intergenic 25.0%
! AATTTGAGTAAACACAAACA+AGG - chr4_1:70296918-70296937 None:intergenic 25.0%
!! ATCCTTTTTATCTATATCTG+TGG + chr4_1:70296993-70297012 Msa0568680:intron 25.0%
!! TCCTTTTTATCTATATCTGT+GGG + chr4_1:70296994-70297013 Msa0568680:intron 25.0%
!!! TGTTTTAATTCTTAGCTTGA+TGG + chr4_1:70297123-70297142 Msa0568680:intron 25.0%
!!! GTTAACTTGTACTGTATTTA+TGG + chr4_1:70297259-70297278 Msa0568680:intron 25.0%
!!! AACTTTGGAAATTTTGGAAT+TGG - chr4_1:70297443-70297462 None:intergenic 25.0%
! TTTCAGAATAGTTAAGAACT+GGG - chr4_1:70297505-70297524 None:intergenic 25.0%
!!! TATTCTGAAACAAAGCATTA+TGG + chr4_1:70297515-70297534 Msa0568680:intron 25.0%
! TCATTTGAATTATGTGTGAA+AGG + chr4_1:70297785-70297804 Msa0568680:intron 25.0%
! TTCAAGATAATCATTGTTGT+GGG - chr4_1:70298272-70298291 None:intergenic 25.0%
! TTTCAAGATAATCATTGTTG+TGG - chr4_1:70298273-70298292 None:intergenic 25.0%
! TTGTATCAAAATACTATGCA+AGG + chr4_1:70298948-70298967 Msa0568680:CDS 25.0%
!!! GCTATAGTAACTTTTTCTTA+TGG + chr4_1:70299054-70299073 Msa0568680:intron 25.0%
! AAGAAATAAACTAAGATGGA+AGG - chr4_1:70299208-70299227 None:intergenic 25.0%
! TTATGCAAGAGTAATTGATT+AGG - chr4_1:70299246-70299265 None:intergenic 25.0%
AACAACGATCTGATCATTTA+GGG - chr4_1:70295028-70295047 None:intergenic 30.0%
AAACAACGATCTGATCATTT+AGG - chr4_1:70295029-70295048 None:intergenic 30.0%
! AAATTGATGCGTTTTGTGTT+AGG + chr4_1:70295089-70295108 Msa0568680:intron 30.0%
! AATTGATGCGTTTTGTGTTA+GGG + chr4_1:70295090-70295109 Msa0568680:intron 30.0%
TTTAATCGATTGGTAGGTTT+AGG + chr4_1:70295124-70295143 Msa0568680:intron 30.0%
TTAATCGATTGGTAGGTTTA+GGG + chr4_1:70295125-70295144 Msa0568680:intron 30.0%
! TGTGTAGTTAGAAAGAGTTT+TGG + chr4_1:70295219-70295238 Msa0568680:intron 30.0%
! GTGTAGTTAGAAAGAGTTTT+GGG + chr4_1:70295220-70295239 Msa0568680:intron 30.0%
!! GATTACGTTTTAGACTTCAA+AGG + chr4_1:70295242-70295261 Msa0568680:intron 30.0%
!! GTTGTTTTCATATGCTATCT+TGG + chr4_1:70295519-70295538 Msa0568680:intron 30.0%
!! TGTCATAAGCTGTTTTCATA+AGG + chr4_1:70295581-70295600 Msa0568680:intron 30.0%
!! TAAGTTTTGTGAGACTGTAT+GGG - chr4_1:70295610-70295629 None:intergenic 30.0%
!! ATAAGTTTTGTGAGACTGTA+TGG - chr4_1:70295611-70295630 None:intergenic 30.0%
TTAAATAAGCCAATCCAAAC+AGG + chr4_1:70295645-70295664 Msa0568680:intron 30.0%
! GTGAGAATCGTGATATTTTA+CGG + chr4_1:70295701-70295720 Msa0568680:intron 30.0%
TCAATACGAGTTTCAATATC+CGG - chr4_1:70295805-70295824 None:intergenic 30.0%
AATTTCTTGCATCAAATCAG+CGG - chr4_1:70296056-70296075 None:intergenic 30.0%
TGATTTGATGCAAGAAATTG+CGG + chr4_1:70296057-70296076 Msa0568680:CDS 30.0%
ATGTAATGTGCAATCTTATC+AGG + chr4_1:70296170-70296189 Msa0568680:intron 30.0%
TTAGTGATGACAGAAATAGT+AGG + chr4_1:70296266-70296285 Msa0568680:intron 30.0%
ACCATATTATCACCTTCTTT+GGG - chr4_1:70296461-70296480 None:intergenic 30.0%
!! TTCAGTTTCATTCACTTTTG+AGG + chr4_1:70296709-70296728 Msa0568680:intron 30.0%
!! TTCATTCACTTTTGAGGATA+TGG + chr4_1:70296715-70296734 Msa0568680:intron 30.0%
TCCCACAGATATAGATAAAA+AGG - chr4_1:70296998-70297017 None:intergenic 30.0%
!! CTATGATTTGTTTCTATGCT+TGG + chr4_1:70297018-70297037 Msa0568680:intron 30.0%
CCTAAGAAACTTAGATCATT+AGG - chr4_1:70297237-70297256 None:intergenic 30.0%
CCTAATGATCTAAGTTTCTT+AGG + chr4_1:70297234-70297253 Msa0568680:intron 30.0%
! TATTTATGGATTGCTAGAGT+TGG + chr4_1:70297273-70297292 Msa0568680:intron 30.0%
TGGAATTGGAAAGAAAACAA+GGG - chr4_1:70297429-70297448 None:intergenic 30.0%
TTGGAATTGGAAAGAAAACA+AGG - chr4_1:70297430-70297449 None:intergenic 30.0%
!! AGGGATAACTTTGGAAATTT+TGG - chr4_1:70297449-70297468 None:intergenic 30.0%
GTTTCAGAATAGTTAAGAAC+TGG - chr4_1:70297506-70297525 None:intergenic 30.0%
AGTATCAATGGTAAAAGACA+AGG - chr4_1:70297624-70297643 None:intergenic 30.0%
AGCAGCATAAATATAAACGA+CGG - chr4_1:70297748-70297767 None:intergenic 30.0%
CACACATAATTCAAATGAAC+AGG - chr4_1:70297783-70297802 None:intergenic 30.0%
!! AATTGTTGTTTGTCTACTGT+TGG + chr4_1:70297862-70297881 Msa0568680:intron 30.0%
AAGTAAAGAATTGATCACAG+TGG + chr4_1:70298030-70298049 Msa0568680:intron 30.0%
!! CTACATATTTTTCTAGTACC+TGG + chr4_1:70298167-70298186 Msa0568680:intron 30.0%
AGTAAGAAATATCATGAACC+AGG - chr4_1:70298188-70298207 None:intergenic 30.0%
CTGTATGCAAGAACAATATT+TGG - chr4_1:70298455-70298474 None:intergenic 30.0%
! TGTTTAGAATTCCTTGTCAT+TGG + chr4_1:70298641-70298660 Msa0568680:intron 30.0%
! TACAACAAGAATGTTCTGAA+AGG - chr4_1:70298933-70298952 None:intergenic 30.0%
!! TAACTTTTTCTTATGGTGTG+TGG + chr4_1:70299061-70299080 Msa0568680:intron 30.0%
!! AACTTTTTCTTATGGTGTGT+GGG + chr4_1:70299062-70299081 Msa0568680:intron 30.0%
! CAACATCTATTTTCACATTC+AGG - chr4_1:70299163-70299182 None:intergenic 30.0%
CAATTACTCTTGCATAATTC+AGG + chr4_1:70299249-70299268 Msa0568680:intron 30.0%
CAATGATGTACTTAACTCAT+GGG + chr4_1:70299372-70299391 Msa0568680:CDS 30.0%
ACAGTGAGAAAATTTGAGAA+AGG - chr4_1:70299516-70299535 None:intergenic 30.0%
GTTCTTCATATTCTTTCGTT+TGG + chr4_1:70299949-70299968 Msa0568680:three_prime_UTR 30.0%
! GCTTTTCAATTCGTTTCTGT+AGG + chr4_1:70294861-70294880 Msa0568680:intron 35.0%
!! ATTTAGGGTTTTCCATGCTT+TGG - chr4_1:70295013-70295032 None:intergenic 35.0%
! TTTGGTTCGCTTGAAACTAT+CGG + chr4_1:70295149-70295168 Msa0568680:intron 35.0%
ACTGTTCAGTTCAGATACTA+TGG + chr4_1:70295359-70295378 Msa0568680:intron 35.0%
! TCAGATACTATGGTCCTTTT+TGG + chr4_1:70295369-70295388 Msa0568680:intron 35.0%
AATATATGGCCTGTTTGGAT+TGG - chr4_1:70295657-70295676 None:intergenic 35.0%
ACAACAATATATGGCCTGTT+TGG - chr4_1:70295662-70295681 None:intergenic 35.0%
AGCCTACTATATACTATCAC+AGG + chr4_1:70295732-70295751 Msa0568680:intron 35.0%
AGCCTGTGATAGTATATAGT+AGG - chr4_1:70295737-70295756 None:intergenic 35.0%
CAAGAAACTTGCCAAGATTA+AGG + chr4_1:70296006-70296025 Msa0568680:CDS 35.0%
TAATGTGCAATCTTATCAGG+TGG + chr4_1:70296173-70296192 Msa0568680:intron 35.0%
! TCTTATCAGGTGGAAACTTT+TGG + chr4_1:70296183-70296202 Msa0568680:intron 35.0%
!! TTCTTGAGAGTATTTGTGCA+CGG - chr4_1:70296388-70296407 None:intergenic 35.0%
ATTCGACATAGATGCATCTA+AGG + chr4_1:70296424-70296443 Msa0568680:CDS 35.0%
GAAAAGAAAAAGCCCAAAGA+AGG + chr4_1:70296446-70296465 Msa0568680:CDS 35.0%
GACCATATTATCACCTTCTT+TGG - chr4_1:70296462-70296481 None:intergenic 35.0%
TGTTTCAACTCTAGTAGAGA+CGG - chr4_1:70296506-70296525 None:intergenic 35.0%
AAGAAATACTACAACGAAGC+AGG - chr4_1:70296571-70296590 None:intergenic 35.0%
GTAGATACTCTAAATTGTCC+TGG + chr4_1:70296675-70296694 Msa0568680:intron 35.0%
!!! TGAGGATATGGTTTTGATGT+TGG + chr4_1:70296727-70296746 Msa0568680:intron 35.0%
GACATTAATGCATCACTGTT+AGG - chr4_1:70296778-70296797 None:intergenic 35.0%
!! TTGTTTCTATGCTTGGCATT+TGG + chr4_1:70297025-70297044 Msa0568680:intron 35.0%
AGAAATGTGTGCAGAAGAAT+TGG - chr4_1:70297396-70297415 None:intergenic 35.0%
GATGAAAAGTAGGGATGAAA+GGG - chr4_1:70297468-70297487 None:intergenic 35.0%
AGATGAAAAGTAGGGATGAA+AGG - chr4_1:70297469-70297488 None:intergenic 35.0%
GCAGACAAAGATGAAAAGTA+GGG - chr4_1:70297477-70297496 None:intergenic 35.0%
AGCAGACAAAGATGAAAAGT+AGG - chr4_1:70297478-70297497 None:intergenic 35.0%
AAGGAATCCAAATGTTAGGA+AGG - chr4_1:70297605-70297624 None:intergenic 35.0%
AGACAAGGAATCCAAATGTT+AGG - chr4_1:70297609-70297628 None:intergenic 35.0%
!! AAACGACGGTTGATAAGAAT+TGG - chr4_1:70297734-70297753 None:intergenic 35.0%
AAAACATGTTGCAAGAGTGA+AGG - chr4_1:70297891-70297910 None:intergenic 35.0%
ACCCAAGTTTAGAAAGCTAT+GGG - chr4_1:70298077-70298096 None:intergenic 35.0%
AACCCAAGTTTAGAAAGCTA+TGG - chr4_1:70298078-70298097 None:intergenic 35.0%
! GGTTTTCTGTCTGTGATTTT+AGG + chr4_1:70298239-70298258 Msa0568680:intron 35.0%
CATATATTGCCTTATAGCAG+CGG - chr4_1:70298300-70298319 None:intergenic 35.0%
! ATCAGCAGGATTTTCTTTGA+TGG - chr4_1:70298332-70298351 None:intergenic 35.0%
AAAGAGAATAGAAAGCCTAC+AGG - chr4_1:70298361-70298380 None:intergenic 35.0%
AGATCCTGAGGAAAATATGT+TGG + chr4_1:70298473-70298492 Msa0568680:intron 35.0%
TTTAAAAGACTGGACTGCAT+CGG - chr4_1:70298523-70298542 None:intergenic 35.0%
CAAGGTGGAATTTAAAAGAC+TGG - chr4_1:70298533-70298552 None:intergenic 35.0%
! CAGTCTTTTAAATTCCACCT+TGG + chr4_1:70298531-70298550 Msa0568680:CDS 35.0%
! TCTTTTAAATTCCACCTTGG+AGG + chr4_1:70298534-70298553 Msa0568680:CDS 35.0%
AGATAGATTTCTATCCTCCA+AGG - chr4_1:70298551-70298570 None:intergenic 35.0%
AGGATAACATACTGGAAGTT+TGG - chr4_1:70298580-70298599 None:intergenic 35.0%
TGAGAGATAGGATAACATAC+TGG - chr4_1:70298588-70298607 None:intergenic 35.0%
TTCACTCAAAAACTTTCCAG+AGG - chr4_1:70298779-70298798 None:intergenic 35.0%
!! ACTTTTTCTTATGGTGTGTG+GGG + chr4_1:70299063-70299082 Msa0568680:intron 35.0%
TTCGTGGAAAACTATATCCT+TGG + chr4_1:70299087-70299106 Msa0568680:intron 35.0%
ACTATATCCTTGGAAAGTGA+AGG + chr4_1:70299097-70299116 Msa0568680:intron 35.0%
GTAAACCTTTAACTACCTAC+TGG + chr4_1:70299182-70299201 Msa0568680:intron 35.0%
GCAATGATGTACTTAACTCA+TGG + chr4_1:70299371-70299390 Msa0568680:CDS 35.0%
TCAAATACACAAGGAAACCA+TGG + chr4_1:70299441-70299460 Msa0568680:CDS 35.0%
! AAACCTTCAAAGCTGCTTTA+TGG - chr4_1:70299468-70299487 None:intergenic 35.0%
! CTTTGAAGGTTTAAGAAGGT+AGG + chr4_1:70299476-70299495 Msa0568680:intron 35.0%
AAGAAGGTAGGTCCATATAT+CGG + chr4_1:70299488-70299507 Msa0568680:intron 35.0%
!! TGCTTATTTCTGGTCATTTC+AGG + chr4_1:70299642-70299661 Msa0568680:intron 35.0%
TCAGTCCATATCACATATTG+AGG - chr4_1:70299673-70299692 None:intergenic 35.0%
! ATTTTGCCATTATGCGTTTC+AGG + chr4_1:70299768-70299787 Msa0568680:three_prime_UTR 35.0%
! TTTTGCCATTATGCGTTTCA+GGG + chr4_1:70299769-70299788 Msa0568680:three_prime_UTR 35.0%
AACTACATACAAGACCGTTT+AGG - chr4_1:70299907-70299926 None:intergenic 35.0%
! TGGTTGGTTGAGTGAAGTTT+GGG - chr4_1:70294744-70294763 None:intergenic 40.0%
AAGATTACCATGGTTGTGGT+TGG - chr4_1:70294760-70294779 None:intergenic 40.0%
ATCGAAGATTACCATGGTTG+TGG - chr4_1:70294764-70294783 None:intergenic 40.0%
GAATCGATCGAAGATTACCA+TGG - chr4_1:70294770-70294789 None:intergenic 40.0%
AAAACGATTGCGATGAACCA+TGG - chr4_1:70294797-70294816 None:intergenic 40.0%
GGCGTGAGATTAATAGTGAA+GGG - chr4_1:70294835-70294854 None:intergenic 40.0%
TGGCGTGAGATTAATAGTGA+AGG - chr4_1:70294836-70294855 None:intergenic 40.0%
TTCGTTTCTGTAGGCAAACA+TGG + chr4_1:70294870-70294889 Msa0568680:intron 40.0%
!!! TCTGTTTTGAAGCCAAAGCA+TGG + chr4_1:70294998-70295017 Msa0568680:CDS 40.0%
!! GTTGTTTTGTCTAAACGACG+CGG + chr4_1:70295042-70295061 Msa0568680:CDS 40.0%
! ATGCGTTTTGTGTTAGGGTT+TGG + chr4_1:70295095-70295114 Msa0568680:intron 40.0%
! TGCGTTTTGTGTTAGGGTTT+GGG + chr4_1:70295096-70295115 Msa0568680:intron 40.0%
!! GATTGGTAGGTTTAGGGTTT+TGG + chr4_1:70295131-70295150 Msa0568680:intron 40.0%
CAGCTTATGACACTTCTCAT+AGG - chr4_1:70295573-70295592 None:intergenic 40.0%
GCAATATATTGACGAGACAC+CGG + chr4_1:70295783-70295802 Msa0568680:CDS 40.0%
ACATTGAACAGTGTATCTGC+TGG + chr4_1:70295835-70295854 Msa0568680:CDS 40.0%
CATTGAACAGTGTATCTGCT+GGG + chr4_1:70295836-70295855 Msa0568680:CDS 40.0%
ATGTTGAGATTGAGAGAGCT+AGG + chr4_1:70295978-70295997 Msa0568680:CDS 40.0%
TGCCAAGATTAAGGAAGAAC+AGG + chr4_1:70296015-70296034 Msa0568680:CDS 40.0%
GCCAAGATTAAGGAAGAACA+GGG + chr4_1:70296016-70296035 Msa0568680:CDS 40.0%
CCAAGATTAAGGAAGAACAG+GGG + chr4_1:70296017-70296036 Msa0568680:CDS 40.0%
GCATCTATGTCGAATACTCT+TGG - chr4_1:70296419-70296438 None:intergenic 40.0%
GCCCAAAGAAGGTGATAATA+TGG + chr4_1:70296457-70296476 Msa0568680:CDS 40.0%
AGGTGATAATATGGTCGAAG+AGG + chr4_1:70296466-70296485 Msa0568680:CDS 40.0%
CCACAGTACTTGTAACTACA+AGG - chr4_1:70296601-70296620 None:intergenic 40.0%
! CCTTGTAGTTACAAGTACTG+TGG + chr4_1:70296598-70296617 Msa0568680:intron 40.0%
AACTGAAAACGCAGAAAACC+AGG - chr4_1:70296696-70296715 None:intergenic 40.0%
! TTATGGATTGCTAGAGTTGG+TGG + chr4_1:70297276-70297295 Msa0568680:intron 40.0%
AAAGTGCACAATTACAGTGC+AGG - chr4_1:70297356-70297375 None:intergenic 40.0%
! GCACTGTAATTGTGCACTTT+TGG + chr4_1:70297356-70297375 Msa0568680:intron 40.0%
AGGGATGAAAGGGATAACTT+TGG - chr4_1:70297458-70297477 None:intergenic 40.0%
! TTTAGAGCTGTCAAACTCTC+TGG + chr4_1:70297569-70297588 Msa0568680:intron 40.0%
TGGTCATCCTTCCTAACATT+TGG + chr4_1:70297595-70297614 Msa0568680:intron 40.0%
ATTATGTGTGAAAGGCAACC+AGG + chr4_1:70297793-70297812 Msa0568680:intron 40.0%
ACAAAACTCCTGTCATGACA+AGG + chr4_1:70297820-70297839 Msa0568680:intron 40.0%
TTCCTAAACCTTGTCATGAC+AGG - chr4_1:70297831-70297850 None:intergenic 40.0%
GTCATGACAAGGTTTAGGAA+AGG + chr4_1:70297831-70297850 Msa0568680:intron 40.0%
TGATCACAGTGGAGTATATG+TGG + chr4_1:70298041-70298060 Msa0568680:intron 40.0%
TCCCCATAGCTTTCTAAACT+TGG + chr4_1:70298072-70298091 Msa0568680:intron 40.0%
CCCAAGTTTAGAAAGCTATG+GGG - chr4_1:70298076-70298095 None:intergenic 40.0%
CCCCATAGCTTTCTAAACTT+GGG + chr4_1:70298073-70298092 Msa0568680:intron 40.0%
ACAGACAGAAAACCAGCATA+AGG - chr4_1:70298233-70298252 None:intergenic 40.0%
TGAAATTTGCCGCTGCTATA+AGG + chr4_1:70298288-70298307 Msa0568680:CDS 40.0%
! GCAGGATTTTCTTTGATGGA+CGG - chr4_1:70298328-70298347 None:intergenic 40.0%
CCTACAGGAATAAAATCAGC+AGG - chr4_1:70298346-70298365 None:intergenic 40.0%
!!! CCTGCTGATTTTATTCCTGT+AGG + chr4_1:70298343-70298362 Msa0568680:intron 40.0%
! AGCACCAACATATTTTCCTC+AGG - chr4_1:70298480-70298499 None:intergenic 40.0%
! GAGGAAAATATGTTGGTGCT+TGG + chr4_1:70298480-70298499 Msa0568680:CDS 40.0%
TAGATTTCTATCCTCCAAGG+TGG - chr4_1:70298548-70298567 None:intergenic 40.0%
AAGGATGAGAGATGAGAGAT+AGG - chr4_1:70298600-70298619 None:intergenic 40.0%
AACAGGTACAACCAATGACA+AGG - chr4_1:70298655-70298674 None:intergenic 40.0%
GAACGAGTTTGACAATGAGA+TGG + chr4_1:70298753-70298772 Msa0568680:CDS 40.0%
TACTAGCATTACACACCTCT+AGG - chr4_1:70299012-70299031 None:intergenic 40.0%
GAGGTGTGTAATGCTAGTAA+TGG + chr4_1:70299013-70299032 Msa0568680:intron 40.0%
ATATCCTTGGAAAGTGAAGG+TGG + chr4_1:70299100-70299119 Msa0568680:intron 40.0%
!! TGAGAAGCATCTGTCTGATA+TGG + chr4_1:70299276-70299295 Msa0568680:CDS 40.0%
GTCTGATATGGTTGTTACCA+AGG + chr4_1:70299288-70299307 Msa0568680:CDS 40.0%
TGCAAAGATTGACAGACCAA+TGG + chr4_1:70299318-70299337 Msa0568680:CDS 40.0%
GCAAAGATTGACAGACCAAT+GGG + chr4_1:70299319-70299338 Msa0568680:CDS 40.0%
TGGAAACAGACTATTCCCAT+TGG - chr4_1:70299337-70299356 None:intergenic 40.0%
AGTCTGTTTCCAAACAGCAA+AGG + chr4_1:70299345-70299364 Msa0568680:CDS 40.0%
!! CATTGCTATCCTTTGCTGTT+TGG - chr4_1:70299357-70299376 None:intergenic 40.0%
GAGCTGTCATCAAATACACA+AGG + chr4_1:70299432-70299451 Msa0568680:CDS 40.0%
!! GCAGCTTTGAAGGTTTAAGA+AGG + chr4_1:70299472-70299491 Msa0568680:exon 40.0%
TTGAGAAAGGAGCCGATATA+TGG - chr4_1:70299503-70299522 None:intergenic 40.0%
TGCCTCCTCAATATGTGATA+TGG + chr4_1:70299665-70299684 Msa0568680:three_prime_UTR 40.0%
GTCCATATCACATATTGAGG+AGG - chr4_1:70299670-70299689 None:intergenic 40.0%
! TATGGACTGAAGTTGCCTTA+TGG + chr4_1:70299683-70299702 Msa0568680:three_prime_UTR 40.0%
! ATGGACTGAAGTTGCCTTAT+GGG + chr4_1:70299684-70299703 Msa0568680:three_prime_UTR 40.0%
TTCAAATGAGCATCCCCATA+AGG - chr4_1:70299701-70299720 None:intergenic 40.0%
TGAAATGTTGCTCACTGTGT+TGG + chr4_1:70299717-70299736 Msa0568680:three_prime_UTR 40.0%
ATCTACCCTGAAACGCATAA+TGG - chr4_1:70299777-70299796 None:intergenic 40.0%
TTACCGGACAAGATCCTAAA+CGG + chr4_1:70299890-70299909 Msa0568680:three_prime_UTR 40.0%
! ACGGTCTTGTATGTAGTTAG+TGG + chr4_1:70299909-70299928 Msa0568680:three_prime_UTR 40.0%
TTTATTGTGCAAGTGCAGCT+TGG + chr4_1:70300008-70300027 Msa0568680:three_prime_UTR 40.0%
GAGAGAGAGAGAGAGATCTA+TGG - chr4_1:70294706-70294725 None:intergenic 45.0%
GTTGGTTGAGTGAAGTTTGG+GGG - chr4_1:70294742-70294761 None:intergenic 45.0%
! GGTTGGTTGAGTGAAGTTTG+GGG - chr4_1:70294743-70294762 None:intergenic 45.0%
! GTGGTTGGTTGAGTGAAGTT+TGG - chr4_1:70294745-70294764 None:intergenic 45.0%
! CTTCGATCGATTCTCTTCCA+TGG + chr4_1:70294777-70294796 Msa0568680:intron 45.0%
ATCACAGGCTGTAACAGCTA+TGG + chr4_1:70295747-70295766 Msa0568680:intron 45.0%
TGTAACAGCTATGGTACAGC+AGG + chr4_1:70295756-70295775 Msa0568680:CDS 45.0%
TGAGATTGAGAGAGCTAGGT+TGG + chr4_1:70295982-70296001 Msa0568680:CDS 45.0%
CCCCTGTTCTTCCTTAATCT+TGG - chr4_1:70296020-70296039 None:intergenic 45.0%
!! GGTGGAAACTTTTGGTGCAA+TGG + chr4_1:70296191-70296210 Msa0568680:intron 45.0%
TTTGTGCACGGACATAATCC+TGG - chr4_1:70296376-70296395 None:intergenic 45.0%
AGTAGAGACGGAATATCTGC+AGG - chr4_1:70296494-70296513 None:intergenic 45.0%
TGGTTCCATAGACGAAAGTG+CGG + chr4_1:70297045-70297064 Msa0568680:intron 45.0%
GCTGTCAAACTCTCTGGTTA+TGG + chr4_1:70297575-70297594 Msa0568680:intron 45.0%
CTCCTGTCATGACAAGGTTT+AGG + chr4_1:70297826-70297845 Msa0568680:intron 45.0%
CGATTTCACAGTCAGTGAAG+CGG - chr4_1:70298113-70298132 None:intergenic 45.0%
GTTCTTGCATACAGATCCTG+AGG + chr4_1:70298461-70298480 Msa0568680:intron 45.0%
TGTACCTGTTACACGTGTCT+AGG + chr4_1:70298665-70298684 Msa0568680:intron 45.0%
!!! TAGGCTACTTTTGAAGCAGC+TGG + chr4_1:70298684-70298703 Msa0568680:intron 45.0%
TCACCATGGAAGTCATCCAA+TGG + chr4_1:70298707-70298726 Msa0568680:CDS 45.0%
TGTCCATTGGATGACTTCCA+TGG - chr4_1:70298713-70298732 None:intergenic 45.0%
TCATCCAATGGACAGCTCTT+TGG + chr4_1:70298719-70298738 Msa0568680:CDS 45.0%
CATCCAATGGACAGCTCTTT+GGG + chr4_1:70298720-70298739 Msa0568680:CDS 45.0%
TTTGACAATGAGATGGCCTC+TGG + chr4_1:70298760-70298779 Msa0568680:CDS 45.0%
CTTGGAAAGTGAAGGTGGTA+GGG + chr4_1:70299105-70299124 Msa0568680:intron 45.0%
TTGGAAAGTGAAGGTGGTAG+GGG + chr4_1:70299106-70299125 Msa0568680:intron 45.0%
GAAGGCCAGTAGGTAGTTAA+AGG - chr4_1:70299190-70299209 None:intergenic 45.0%
AACTAAGATGGAAGGCCAGT+AGG - chr4_1:70299200-70299219 None:intergenic 45.0%
TATGGTTGTTACCAAGGCTC+TGG + chr4_1:70299294-70299313 Msa0568680:CDS 45.0%
AATCTTTGCAACCAGAGCCT+TGG - chr4_1:70299308-70299327 None:intergenic 45.0%
TAACTCATGGGCAGCAAACT+TGG + chr4_1:70299384-70299403 Msa0568680:CDS 45.0%
GGAGAAACTGCTTGATCTTG+TGG + chr4_1:70299405-70299424 Msa0568680:CDS 45.0%
! CAAAGCTGCTTTATGGACCA+TGG - chr4_1:70299461-70299480 None:intergenic 45.0%
! GGTCCATAAAGCAGCTTTGA+AGG + chr4_1:70299462-70299481 Msa0568680:CDS 45.0%
TGGACTGAAGTTGCCTTATG+GGG + chr4_1:70299685-70299704 Msa0568680:three_prime_UTR 45.0%
!! ATACCTTACCACCGACTTAC+CGG + chr4_1:70299874-70299893 Msa0568680:three_prime_UTR 45.0%
TAGGATCTTGTCCGGTAAGT+CGG - chr4_1:70299888-70299907 None:intergenic 45.0%
! AGACCGTTTAGGATCTTGTC+CGG - chr4_1:70299896-70299915 None:intergenic 45.0%
CACTCAACCAACCACAACCA+TGG + chr4_1:70294750-70294769 Msa0568680:exon 50.0%
GAGAAACAAATGCGTCTCGC+CGG + chr4_1:70294931-70294950 Msa0568680:CDS 50.0%
!! TCTAGTGCCGACTATTTCGC+CGG - chr4_1:70294953-70294972 None:intergenic 50.0%
GAACAGTGTATCTGCTGGGA+AGG + chr4_1:70295840-70295859 Msa0568680:CDS 50.0%
CCAATCCGCACTTTCGTCTA+TGG - chr4_1:70297053-70297072 None:intergenic 50.0%
! CCATAGACGAAAGTGCGGAT+TGG + chr4_1:70297050-70297069 Msa0568680:intron 50.0%
! CGGATTGGAGTGCATGTTTG+TGG + chr4_1:70297065-70297084 Msa0568680:intron 50.0%
GTAGCCTAGACACGTGTAAC+AGG - chr4_1:70298672-70298691 None:intergenic 50.0%
! TTTGAAGCAGCTGGTCACCA+TGG + chr4_1:70298693-70298712 Msa0568680:CDS 50.0%
TCTCCCAAAGAGCTGTCCAT+TGG - chr4_1:70298726-70298745 None:intergenic 50.0%
! GCTTTTGTGTCTCAGCCTAG+AGG + chr4_1:70298994-70299013 Msa0568680:CDS 50.0%
TTATGGTGTGTGGGGATTCG+TGG + chr4_1:70299071-70299090 Msa0568680:intron 50.0%
CCTACCACCTTCACTTTCCA+AGG - chr4_1:70299107-70299126 None:intergenic 50.0%
CCTTGGAAAGTGAAGGTGGT+AGG + chr4_1:70299104-70299123 Msa0568680:intron 50.0%
TGAAGGTGGTAGGGGAATTG+TGG + chr4_1:70299114-70299133 Msa0568680:intron 50.0%
! TGTTGCTCACTGTGTTGGTG+AGG + chr4_1:70299722-70299741 Msa0568680:three_prime_UTR 50.0%
AGAACAGGGGCTCATAGCTG+AGG + chr4_1:70296030-70296049 Msa0568680:CDS 55.0%
GGACATAATCCTGGCGGTCT+AGG - chr4_1:70296367-70296386 None:intergenic 55.0%
GTGCACGGACATAATCCTGG+CGG - chr4_1:70296373-70296392 None:intergenic 55.0%
GCAGTCGGACAGACAGTCAT+TGG - chr4_1:70296842-70296861 None:intergenic 55.0%
!! GACAGGAGTTTTGTAGCGCC+TGG - chr4_1:70297814-70297833 None:intergenic 55.0%
! CTGGACTGCATCGGTGAATG+TGG - chr4_1:70298514-70298533 None:intergenic 55.0%
TGTCCGGTAAGTCGGTGGTA+AGG - chr4_1:70299880-70299899 None:intergenic 55.0%
GATCTTGTCCGGTAAGTCGG+TGG - chr4_1:70299885-70299904 None:intergenic 55.0%
CGTCTCGCCGGCGAAATAGT+CGG + chr4_1:70294943-70294962 Msa0568680:CDS 60.0%
TCGATTGTGCCTAGACCGCC+AGG + chr4_1:70296355-70296374 Msa0568680:CDS 60.0%
ACGACGCGGTCAGCTCAAGC+AGG + chr4_1:70295056-70295075 Msa0568680:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 70294685 70300122 70294685 ID=Msa0568680;Name=Msa0568680
chr4_1 mRNA 70294685 70300122 70294685 ID=Msa0568680-mRNA-1;Parent=Msa0568680;Name=Msa0568680-mRNA-1;_AED=0.07;_eAED=0.07;_QI=84|1|1|1|0.90|0.91|12|463|441
chr4_1 exon 70294685 70294771 70294685 ID=Msa0568680-mRNA-1:exon:23681;Parent=Msa0568680-mRNA-1
chr4_1 exon 70294883 70295077 70294883 ID=Msa0568680-mRNA-1:exon:23682;Parent=Msa0568680-mRNA-1
chr4_1 exon 70295754 70295861 70295754 ID=Msa0568680-mRNA-1:exon:23683;Parent=Msa0568680-mRNA-1
chr4_1 exon 70295974 70296078 70295974 ID=Msa0568680-mRNA-1:exon:23684;Parent=Msa0568680-mRNA-1
chr4_1 exon 70296192 70296248 70296192 ID=Msa0568680-mRNA-1:exon:23685;Parent=Msa0568680-mRNA-1
chr4_1 exon 70296353 70296549 70296353 ID=Msa0568680-mRNA-1:exon:23686;Parent=Msa0568680-mRNA-1
chr4_1 exon 70298261 70298360 70298261 ID=Msa0568680-mRNA-1:exon:23687;Parent=Msa0568680-mRNA-1
chr4_1 exon 70298475 70298587 70298475 ID=Msa0568680-mRNA-1:exon:23688;Parent=Msa0568680-mRNA-1
chr4_1 exon 70298687 70298837 70298687 ID=Msa0568680-mRNA-1:exon:23689;Parent=Msa0568680-mRNA-1
chr4_1 exon 70298938 70299015 70298938 ID=Msa0568680-mRNA-1:exon:23690;Parent=Msa0568680-mRNA-1
chr4_1 exon 70299271 70299493 70299271 ID=Msa0568680-mRNA-1:exon:23691;Parent=Msa0568680-mRNA-1
chr4_1 exon 70299664 70300122 70299664 ID=Msa0568680-mRNA-1:exon:23692;Parent=Msa0568680-mRNA-1
chr4_1 five_prime_UTR 70294685 70294768 70294685 ID=Msa0568680-mRNA-1:five_prime_utr;Parent=Msa0568680-mRNA-1
chr4_1 CDS 70294769 70294771 70294769 ID=Msa0568680-mRNA-1:cds;Parent=Msa0568680-mRNA-1
chr4_1 CDS 70294883 70295077 70294883 ID=Msa0568680-mRNA-1:cds;Parent=Msa0568680-mRNA-1
chr4_1 CDS 70295754 70295861 70295754 ID=Msa0568680-mRNA-1:cds;Parent=Msa0568680-mRNA-1
chr4_1 CDS 70295974 70296078 70295974 ID=Msa0568680-mRNA-1:cds;Parent=Msa0568680-mRNA-1
chr4_1 CDS 70296192 70296248 70296192 ID=Msa0568680-mRNA-1:cds;Parent=Msa0568680-mRNA-1
chr4_1 CDS 70296353 70296549 70296353 ID=Msa0568680-mRNA-1:cds;Parent=Msa0568680-mRNA-1
chr4_1 CDS 70298261 70298360 70298261 ID=Msa0568680-mRNA-1:cds;Parent=Msa0568680-mRNA-1
chr4_1 CDS 70298475 70298587 70298475 ID=Msa0568680-mRNA-1:cds;Parent=Msa0568680-mRNA-1
chr4_1 CDS 70298687 70298837 70298687 ID=Msa0568680-mRNA-1:cds;Parent=Msa0568680-mRNA-1
chr4_1 CDS 70298938 70299015 70298938 ID=Msa0568680-mRNA-1:cds;Parent=Msa0568680-mRNA-1
chr4_1 CDS 70299271 70299489 70299271 ID=Msa0568680-mRNA-1:cds;Parent=Msa0568680-mRNA-1
chr4_1 three_prime_UTR 70299490 70299493 70299490 ID=Msa0568680-mRNA-1:three_prime_utr;Parent=Msa0568680-mRNA-1
chr4_1 three_prime_UTR 70299664 70300122 70299664 ID=Msa0568680-mRNA-1:three_prime_utr;Parent=Msa0568680-mRNA-1
Gene Sequence

>Msa0568680

ATGGCAAACATGGAGAATCTAGATGCAAAGATAGAACAATTGCTCAACGTCGAGAAACAAATGCGTCTCGCCGGCGAAATAGTCGGCACTAGAAAAGCTGCAATCGACATCTTGCAACTCTGTTTTGAAGCCAAAGCATGGAAAACCCTAAATGATCAGATCGTTGTTTTGTCTAAACGACGCGGTCAGCTCAAGCAGGCTGTAACAGCTATGGTACAGCAGGCTATGCAATATATTGACGAGACACCGGATATTGAAACTCGTATTGAACTTATCAAAACATTGAACAGTGTATCTGCTGGGAAGATATATGTTGAGATTGAGAGAGCTAGGTTGGTCAAGAAACTTGCCAAGATTAAGGAAGAACAGGGGCTCATAGCTGAGGCCGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCAATGGCAAAAACTGAGAAAATTGCATTCATTCTCGAACAAGTTCGATTGTGCCTAGACCGCCAGGATTATGTCCGTGCACAAATACTCTCAAGAAAGATAAGTCCAAGAGTATTCGACATAGATGCATCTAAGGAAAAGAAAAAGCCCAAAGAAGGTGATAATATGGTCGAAGAGGCTCCTGCAGATATTCCGTCTCTACTAGAGTTGAAACAGATTTATTACGAGCTAATGATTAGGTATTATTCCCACAACAATGATTATCTTGAAATTTGCCGCTGCTATAAGGCAATATATGAGATTCCGTCCATCAAAGAAAATCCTGCTGATTTTATTCCTATCCTGAGGAAAATATGTTGGTGCTTGGTTCTAGCACCACATTCACCGATGCAGTCCAGTCTTTTAAATTCCACCTTGGAGGATAGAAATCTATCTGAGATTCCAAACTTCCAGCTACTTTTGAAGCAGCTGGTCACCATGGAAGTCATCCAATGGACAGCTCTTTGGGAGACATATAAGAACGAGTTTGACAATGAGATGGCCTCTGGAAAGTTTTTGAGTGAAAAAGCAGCTGAAGATCTGAAACAGAGAATTATTGAACATAACATTCTTGTTGTATCAAAATACTATGCAAGGATTACTTTGAAGAGACTTGCACAGCTTTTGTGTCTCAGCCTAGAGGAAGCTGAGAAGCATCTGTCTGATATGGTTGTTACCAAGGCTCTGGTTGCAAAGATTGACAGACCAATGGGAATAGTCTGTTTCCAAACAGCAAAGGATAGCAATGATGTACTTAACTCATGGGCAGCAAACTTGGAGAAACTGCTTGATCTTGTGGAGAAGAGCTGTCATCAAATACACAAGGAAACCATGGTCCATAAAGCAGCTTTGAAGGTTTAA

Protein sequence

>Msa0568680

MANMENLDAKIEQLLNVEKQMRLAGEIVGTRKAAIDILQLCFEAKAWKTLNDQIVVLSKRRGQLKQAVTAMVQQAMQYIDETPDIETRIELIKTLNSVSAGKIYVEIERARLVKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDIDASKEKKKPKEGDNMVEEAPADIPSLLELKQIYYELMIRYYSHNNDYLEICRCYKAIYEIPSIKENPADFIPILRKICWCLVLAPHSPMQSSLLNSTLEDRNLSEIPNFQLLLKQLVTMEVIQWTALWETYKNEFDNEMASGKFLSEKAAEDLKQRIIEHNILVVSKYYARITLKRLAQLLCLSLEEAEKHLSDMVVTKALVAKIDRPMGIVCFQTAKDSNDVLNSWAANLEKLLDLVEKSCHQIHKETMVHKAALKV*