Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299620 | XP_013465067.1 | 94.400 | 125 | 5 | 1 | 1 | 125 | 1 | 123 | 8.19e-81 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299620 | sp|Q8S8I4|EPF1_ARATH | 85.714 | 63 | 9 | 0 | 63 | 125 | 42 | 104 | 1.61e-34 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299620 | A0A072VBC6 | 94.400 | 125 | 5 | 1 | 1 | 125 | 1 | 123 | 3.91e-81 | 243 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0065390 | Msa0299620 | 0.800873 | 1.175145e-48 | -8.615850e-47 |
| Msa0094060 | Msa0299620 | 0.810182 | 1.308806e-50 | -8.615850e-47 |
| Msa0103780 | Msa0299620 | 0.809207 | 2.120796e-50 | -8.615850e-47 |
| Msa0110710 | Msa0299620 | 0.804620 | 1.979253e-49 | -8.615850e-47 |
| Msa0150210 | Msa0299620 | 0.801599 | 8.343402e-49 | -8.615850e-47 |
| Msa0157020 | Msa0299620 | 0.801830 | 7.483943e-49 | -8.615850e-47 |
| Msa0185550 | Msa0299620 | 0.805880 | 1.078275e-49 | -8.615850e-47 |
| Msa0206970 | Msa0299620 | 0.806458 | 8.146169e-50 | -8.615850e-47 |
| Msa0230400 | Msa0299620 | 0.817066 | 3.998171e-52 | -8.615850e-47 |
| Msa0247310 | Msa0299620 | 0.803586 | 3.248108e-49 | -8.615850e-47 |
| Msa0261740 | Msa0299620 | 0.968176 | 2.629478e-128 | -8.615850e-47 |
| Msa0265780 | Msa0299620 | 0.807775 | 4.285841e-50 | -8.615850e-47 |
| Msa0274780 | Msa0299620 | 0.805911 | 1.062084e-49 | -8.615850e-47 |
| Msa0299620 | Msa0303780 | 0.808409 | 3.141749e-50 | -8.615850e-47 |
| Msa0299620 | Msa0315480 | 0.805287 | 1.435818e-49 | -8.615850e-47 |
| Msa0299620 | Msa0337100 | 0.949382 | 1.426314e-107 | -8.615850e-47 |
| Msa0299620 | Msa0380420 | 0.811675 | 6.219037e-51 | -8.615850e-47 |
| Msa0299620 | Msa0382290 | 0.806224 | 9.127026e-50 | -8.615850e-47 |
| Msa0299620 | Msa0392410 | 0.807720 | 4.403906e-50 | -8.615850e-47 |
| Msa0299620 | Msa0392450 | 0.816610 | 5.060205e-52 | -8.615850e-47 |
| Msa0299620 | Msa0392480 | 0.808243 | 3.408718e-50 | -8.615850e-47 |
| Msa0299620 | Msa0413180 | 0.806954 | 6.399618e-50 | -8.615850e-47 |
| Msa0299620 | Msa0421790 | 0.810308 | 1.229538e-50 | -8.615850e-47 |
| Msa0299620 | Msa0467890 | 0.804270 | 2.341291e-49 | -8.615850e-47 |
| Msa0299620 | Msa0476150 | 0.803293 | 3.735116e-49 | -8.615850e-47 |
| Msa0299620 | Msa0487560 | 0.817486 | 3.216128e-52 | -8.615850e-47 |
| Msa0299620 | Msa0487620 | 0.824622 | 7.304814e-54 | -8.615850e-47 |
| Msa0299620 | Msa0510230 | 0.809892 | 1.511546e-50 | -8.615850e-47 |
| Msa0299620 | Msa0567290 | 0.802806 | 4.709566e-49 | -8.615850e-47 |
| Msa0299620 | Msa0703760 | 0.805230 | 1.475507e-49 | -8.615850e-47 |
| Msa0299620 | Msa0734430 | 0.816693 | 4.848265e-52 | -8.615850e-47 |
| Msa0299620 | Msa0738970 | 0.825919 | 3.604147e-54 | -8.615850e-47 |
| Msa0299620 | Msa0803130 | 0.801811 | 7.548030e-49 | -8.615850e-47 |
| Msa0299620 | Msa0804110 | 0.808476 | 3.040363e-50 | -8.615850e-47 |
| Msa0299620 | Msa0819470 | 0.803956 | 2.721503e-49 | -8.615850e-47 |
| Msa0299620 | Msa0841490 | 0.801312 | 9.555502e-49 | -8.615850e-47 |
| Msa0299620 | Msa0859390 | 0.825921 | 3.601561e-54 | -8.615850e-47 |
| Msa0299620 | Msa0893390 | 0.812654 | 3.802631e-51 | -8.615850e-47 |
| Msa0299620 | Msa0946650 | 0.811016 | 8.642346e-51 | -8.615850e-47 |
| Msa0299620 | Msa0988030 | 0.804755 | 1.854792e-49 | -8.615850e-47 |
| Msa0299620 | Msa1180410 | 0.809682 | 1.676813e-50 | -8.615850e-47 |
| Msa0299620 | Msa1232010 | 0.823869 | 1.097833e-53 | -8.615850e-47 |
| Msa0299620 | Msa1254210 | 0.806193 | 9.265437e-50 | -8.615850e-47 |
| Msa0299620 | Msa1274740 | 0.830578 | 2.714468e-55 | -8.615850e-47 |
| Msa0299620 | Msa1306540 | 0.804224 | 2.394245e-49 | -8.615850e-47 |
| Msa0299620 | Msa1312730 | 0.834842 | 2.371553e-56 | -8.615850e-47 |
| Msa0299620 | Msa1375400 | 0.810648 | 1.038401e-50 | -8.615850e-47 |
| Msa0299620 | Msa1375630 | 0.806081 | 9.780995e-50 | -8.615850e-47 |
| Msa0299620 | Msa1376530 | 0.803974 | 2.698225e-49 | -8.615850e-47 |
| Msa0299620 | Msa1424060 | 0.986742 | 8.138494e-168 | -8.615850e-47 |
| Msa0299620 | Msa1424240 | 0.803747 | 3.008188e-49 | -8.615850e-47 |
| Msa0299620 | Msa1437150 | 0.825318 | 5.003783e-54 | -8.615850e-47 |
| Msa0299620 | Msa1442030 | 0.801162 | 1.025706e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299620 | MtrunA17_Chr2g0324101 | 100.000 | 55 | 0 | 0 | 71 | 125 | 1 | 55 | 9.26e-35 | 114 |
| Msa0299620 | MtrunA17_Chr2g0311361 | 59.615 | 52 | 19 | 1 | 74 | 125 | 47 | 96 | 7.30e-14 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299620 | AT2G20875.1 | 85.714 | 63 | 9 | 0 | 63 | 125 | 42 | 104 | 1.64e-35 | 118 |
| Msa0299620 | AT1G34245.1 | 36.752 | 117 | 62 | 3 | 12 | 125 | 10 | 117 | 1.58e-15 | 67.8 |
| Msa0299620 | AT1G71866.2 | 36.220 | 127 | 62 | 5 | 10 | 125 | 15 | 133 | 8.46e-15 | 66.2 |
| Msa0299620 | AT1G71866.1 | 50.000 | 54 | 24 | 1 | 72 | 125 | 119 | 169 | 1.41e-13 | 63.9 |
Find 44 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTATTATAACCAATTCTA+TGG | 0.189428 | 2_3:+54729791 | None:intergenic |
| CGGTTTCCTAGCAATGAAAA+TGG | 0.264943 | 2_3:-54729636 | Msa0299620:three_prime_UTR |
| AACCATGATGAAGAGGAATT+TGG | 0.314180 | 2_3:-54731294 | Msa0299620:exon |
| TTGGAATATAAAGTAAAATA+AGG | 0.344189 | 2_3:+54731252 | None:intergenic |
| ACAAAATAGATGAAAGTAAA+GGG | 0.369736 | 2_3:-54730033 | Msa0299620:CDS |
| AGTAGCTGGTTCGAGGTTGC+CGG | 0.386785 | 2_3:-54729948 | Msa0299620:CDS |
| GTTATGGCACATGCATTTGT+AGG | 0.393759 | 2_3:+54729829 | None:intergenic |
| CTCACCATGCAGATTGGTTA+TGG | 0.400298 | 2_3:-54729900 | Msa0299620:CDS |
| TCATGCTTCAATTTCTAACT+TGG | 0.405231 | 2_3:-54729761 | Msa0299620:three_prime_UTR |
| CCTATCCTGTCCCATAGAAT+TGG | 0.421919 | 2_3:-54729802 | Msa0299620:exon |
| TTCCAATCATCACCTCTTCA+AGG | 0.450570 | 2_3:-54731235 | Msa0299620:CDS |
| CACATGCATTTGTAGGCCAT+TGG | 0.478400 | 2_3:+54729836 | None:intergenic |
| GTTGTCAAACATGGTGGAAA+CGG | 0.478632 | 2_3:-54729656 | Msa0299620:three_prime_UTR |
| CCAGCTACTTGCATCGTGTC+CGG | 0.481240 | 2_3:+54729962 | None:intergenic |
| TGCAATTTCAAAATGTTGAG+TGG | 0.489806 | 2_3:+54731326 | None:intergenic |
| GGACAGGATAGGACTTGTTA+TGG | 0.495900 | 2_3:+54729813 | None:intergenic |
| TGCCTTGAAGAGGTGATGAT+TGG | 0.500190 | 2_3:+54731233 | None:intergenic |
| AGAAATTAACCATGATGAAG+AGG | 0.501659 | 2_3:-54731301 | Msa0299620:exon |
| AACAAAATAGATGAAAGTAA+AGG | 0.501713 | 2_3:-54730034 | Msa0299620:CDS |
| TATAACCAATTCTATGGGAC+AGG | 0.503159 | 2_3:+54729797 | None:intergenic |
| CCGGACACGATGCAAGTAGC+TGG | 0.504387 | 2_3:-54729962 | Msa0299620:CDS |
| TTTCTCTCTGTTGTCAAACA+TGG | 0.507488 | 2_3:-54729665 | Msa0299620:three_prime_UTR |
| GACCAAATTCCTCTTCATCA+TGG | 0.510199 | 2_3:+54731292 | None:intergenic |
| ATCAAAACATACGCGGCGGC+CGG | 0.515180 | 2_3:-54729981 | Msa0299620:CDS |
| GGGCAAAACAAAATCTGCAT+TGG | 0.522159 | 2_3:-54730012 | Msa0299620:CDS |
| TCTATTATAACCAATTCTAT+GGG | 0.530668 | 2_3:+54729792 | None:intergenic |
| ATCATGCTCACCATGCAGAT+TGG | 0.536692 | 2_3:-54729906 | Msa0299620:CDS |
| CGATGCAAGTAGCTGGTTCG+AGG | 0.546321 | 2_3:-54729955 | Msa0299620:CDS |
| CCGCATGCATGAGAACAATC+CGG | 0.553599 | 2_3:+54729929 | None:intergenic |
| GGACATTCAGATCTTGATGT+AGG | 0.560423 | 2_3:-54730058 | Msa0299620:CDS |
| AAACAAAATCTGCATTGGAA+AGG | 0.567974 | 2_3:-54730007 | Msa0299620:CDS |
| GAACTAAGAAGAACATCTCA+AGG | 0.571635 | 2_3:-54731357 | Msa0299620:five_prime_UTR |
| AGTTTGTGCATCCCTTGCAG+AGG | 0.574257 | 2_3:-54729870 | Msa0299620:CDS |
| GACATGATTCAGCCTCTGCA+AGG | 0.577497 | 2_3:+54729858 | None:intergenic |
| CCAATTCTATGGGACAGGAT+AGG | 0.591185 | 2_3:+54729802 | None:intergenic |
| CTCTCTGTTGTCAAACATGG+TGG | 0.591404 | 2_3:-54729662 | Msa0299620:three_prime_UTR |
| CCGGATTGTTCTCATGCATG+CGG | 0.605542 | 2_3:-54729929 | Msa0299620:CDS |
| GTGACTTATGTGCCTTGAAG+AGG | 0.613557 | 2_3:+54731223 | None:intergenic |
| AGAGGCTGAATCATGTCCAA+TGG | 0.629051 | 2_3:-54729852 | Msa0299620:CDS |
| CAAAATAGATGAAAGTAAAG+GGG | 0.631549 | 2_3:-54730032 | Msa0299620:CDS |
| ACATGATTCAGCCTCTGCAA+GGG | 0.634476 | 2_3:+54729859 | None:intergenic |
| CTGACCATAACCAATCTGCA+TGG | 0.667811 | 2_3:+54729896 | None:intergenic |
| GAAGATCAAAACATACGCGG+CGG | 0.743202 | 2_3:-54729985 | Msa0299620:CDS |
| AAGGAAGATCAAAACATACG+CGG | 0.753292 | 2_3:-54729988 | Msa0299620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAATAATAATA+AGG | - | chr2_3:54730165-54730184 | Msa0299620:intron | 0.0% |
| !! | TAATAATAATAATAATAATA+AGG | - | chr2_3:54730165-54730184 | Msa0299620:intron | 0.0% |
| !! | TGACATTAATAAAAAAAAAA+TGG | - | chr2_3:54729792-54729811 | Msa0299620:exon | 10.0% |
| !!! | GATTATTTTTTTCATAAAAA+AGG | - | chr2_3:54730437-54730456 | Msa0299620:intron | 10.0% |
| !! | TGACATTAATAAAAAAAAAA+TGG | - | chr2_3:54729792-54729811 | Msa0299620:exon | 10.0% |
| !!! | GATTATTTTTTTCATAAAAA+AGG | - | chr2_3:54730437-54730456 | Msa0299620:intron | 10.0% |
| !! | TTGGAATATAAAGTAAAATA+AGG | + | chr2_3:54729674-54729693 | None:intergenic | 15.0% |
| !! | TAGAATCTTAAGTAAAAAAT+TGG | + | chr2_3:54729744-54729763 | None:intergenic | 15.0% |
| !!! | ATTGTCATTTTATAACATAA+AGG | + | chr2_3:54730309-54730328 | None:intergenic | 15.0% |
| !!! | GTTGTTATTTTATAACATAA+AGG | - | chr2_3:54730468-54730487 | Msa0299620:intron | 15.0% |
| !!! | TAATCCTTTAACTTAATTTT+AGG | + | chr2_3:54730535-54730554 | None:intergenic | 15.0% |
| !!! | TGTTAATTTTCATGTTAATT+AGG | - | chr2_3:54730838-54730857 | Msa0299620:intron | 15.0% |
| !!! | GTTAATTTTCATGTTAATTA+GGG | - | chr2_3:54730839-54730858 | Msa0299620:intron | 15.0% |
| !! | AAACTAAAAAAAACAAAACA+AGG | + | chr2_3:54731214-54731233 | None:intergenic | 15.0% |
| !! | TTGGAATATAAAGTAAAATA+AGG | + | chr2_3:54729674-54729693 | None:intergenic | 15.0% |
| !! | TAGAATCTTAAGTAAAAAAT+TGG | + | chr2_3:54729744-54729763 | None:intergenic | 15.0% |
| !!! | ATTGTCATTTTATAACATAA+AGG | + | chr2_3:54730309-54730328 | None:intergenic | 15.0% |
| !!! | GTTGTTATTTTATAACATAA+AGG | - | chr2_3:54730468-54730487 | Msa0299620:intron | 15.0% |
| !!! | TAATCCTTTAACTTAATTTT+AGG | + | chr2_3:54730535-54730554 | None:intergenic | 15.0% |
| !!! | TGTTAATTTTCATGTTAATT+AGG | - | chr2_3:54730838-54730857 | Msa0299620:intron | 15.0% |
| !!! | GTTAATTTTCATGTTAATTA+GGG | - | chr2_3:54730839-54730858 | Msa0299620:intron | 15.0% |
| !! | AAACTAAAAAAAACAAAACA+AGG | + | chr2_3:54731214-54731233 | None:intergenic | 15.0% |
| !! | TTAATAGGGAAAATTTATAG+AGG | - | chr2_3:54729899-54729918 | Msa0299620:CDS | 20.0% |
| !! | TAATAGGGAAAATTTATAGA+GGG | - | chr2_3:54729900-54729919 | Msa0299620:CDS | 20.0% |
| !! | AATCGTGACAAAAAAAATAA+AGG | + | chr2_3:54730282-54730301 | None:intergenic | 20.0% |
| !!! | TCAATGAAATTTGATTTTCT+AGG | - | chr2_3:54730355-54730374 | Msa0299620:intron | 20.0% |
| !!! | TGAGTTTGATGAATTTTTTT+TGG | - | chr2_3:54730407-54730426 | Msa0299620:intron | 20.0% |
| !! | GTTACCTAAAATTAAGTTAA+AGG | - | chr2_3:54730528-54730547 | Msa0299620:intron | 20.0% |
| !! | CTAAAATATGCATACTAAAT+TGG | - | chr2_3:54730773-54730792 | Msa0299620:intron | 20.0% |
| !! | AACAAAATAGATGAAAGTAA+AGG | - | chr2_3:54730889-54730908 | Msa0299620:intron | 20.0% |
| !! | ACAAAATAGATGAAAGTAAA+GGG | - | chr2_3:54730890-54730909 | Msa0299620:intron | 20.0% |
| !! | TCTATTATAACCAATTCTAT+GGG | + | chr2_3:54731134-54731153 | None:intergenic | 20.0% |
| !! | TTCTATTATAACCAATTCTA+TGG | + | chr2_3:54731135-54731154 | None:intergenic | 20.0% |
| !! | AAAAACAAAACAAGGAAAAT+GGG | + | chr2_3:54731206-54731225 | None:intergenic | 20.0% |
| !! | AAAAAACAAAACAAGGAAAA+TGG | + | chr2_3:54731207-54731226 | None:intergenic | 20.0% |
| !! | TTAATAGGGAAAATTTATAG+AGG | - | chr2_3:54729899-54729918 | Msa0299620:CDS | 20.0% |
| !! | TAATAGGGAAAATTTATAGA+GGG | - | chr2_3:54729900-54729919 | Msa0299620:CDS | 20.0% |
| !! | AATCGTGACAAAAAAAATAA+AGG | + | chr2_3:54730282-54730301 | None:intergenic | 20.0% |
| !!! | TCAATGAAATTTGATTTTCT+AGG | - | chr2_3:54730355-54730374 | Msa0299620:intron | 20.0% |
| !!! | TGAGTTTGATGAATTTTTTT+TGG | - | chr2_3:54730407-54730426 | Msa0299620:intron | 20.0% |
| !! | GTTACCTAAAATTAAGTTAA+AGG | - | chr2_3:54730528-54730547 | Msa0299620:intron | 20.0% |
| !! | CTAAAATATGCATACTAAAT+TGG | - | chr2_3:54730773-54730792 | Msa0299620:intron | 20.0% |
| !! | AACAAAATAGATGAAAGTAA+AGG | - | chr2_3:54730889-54730908 | Msa0299620:intron | 20.0% |
| !! | ACAAAATAGATGAAAGTAAA+GGG | - | chr2_3:54730890-54730909 | Msa0299620:intron | 20.0% |
| !! | TCTATTATAACCAATTCTAT+GGG | + | chr2_3:54731134-54731153 | None:intergenic | 20.0% |
| !! | TTCTATTATAACCAATTCTA+TGG | + | chr2_3:54731135-54731154 | None:intergenic | 20.0% |
| !! | AAAAACAAAACAAGGAAAAT+GGG | + | chr2_3:54731206-54731225 | None:intergenic | 20.0% |
| !! | AAAAAACAAAACAAGGAAAA+TGG | + | chr2_3:54731207-54731226 | None:intergenic | 20.0% |
| ! | AATAGGGAAAATTTATAGAG+GGG | - | chr2_3:54729901-54729920 | Msa0299620:CDS | 25.0% |
| ! | CAAAATTAGTGGGAAAAAAA+TGG | + | chr2_3:54729987-54730006 | None:intergenic | 25.0% |
| ! | CAAGAAAAAGCAAAATTAGT+GGG | + | chr2_3:54729997-54730016 | None:intergenic | 25.0% |
| ! | TCAAGAAAAAGCAAAATTAG+TGG | + | chr2_3:54729998-54730017 | None:intergenic | 25.0% |
| ! | GTTACCTAAAATTAAGTCAA+GGG | + | chr2_3:54730251-54730270 | None:intergenic | 25.0% |
| ! | TGTTACCTAAAATTAAGTCA+AGG | + | chr2_3:54730252-54730271 | None:intergenic | 25.0% |
| ! | TCGTGACAAAAAAAAGATAA+AGG | - | chr2_3:54730497-54730516 | Msa0299620:intron | 25.0% |
| !!! | TATTTTAGTGCTTTTTTGAG+TGG | + | chr2_3:54730761-54730780 | None:intergenic | 25.0% |
| ! | CAAAATAGATGAAAGTAAAG+GGG | - | chr2_3:54730891-54730910 | Msa0299620:intron | 25.0% |
| ! | AATAGGGAAAATTTATAGAG+GGG | - | chr2_3:54729901-54729920 | Msa0299620:CDS | 25.0% |
| ! | CAAAATTAGTGGGAAAAAAA+TGG | + | chr2_3:54729987-54730006 | None:intergenic | 25.0% |
| ! | CAAGAAAAAGCAAAATTAGT+GGG | + | chr2_3:54729997-54730016 | None:intergenic | 25.0% |
| ! | TCAAGAAAAAGCAAAATTAG+TGG | + | chr2_3:54729998-54730017 | None:intergenic | 25.0% |
| ! | GTTACCTAAAATTAAGTCAA+GGG | + | chr2_3:54730251-54730270 | None:intergenic | 25.0% |
| ! | TGTTACCTAAAATTAAGTCA+AGG | + | chr2_3:54730252-54730271 | None:intergenic | 25.0% |
| ! | TCGTGACAAAAAAAAGATAA+AGG | - | chr2_3:54730497-54730516 | Msa0299620:intron | 25.0% |
| !!! | TATTTTAGTGCTTTTTTGAG+TGG | + | chr2_3:54730761-54730780 | None:intergenic | 25.0% |
| ! | CAAAATAGATGAAAGTAAAG+GGG | - | chr2_3:54730891-54730910 | Msa0299620:intron | 25.0% |
| TGCAATTTCAAAATGTTGAG+TGG | + | chr2_3:54729600-54729619 | None:intergenic | 30.0% | |
| AGAAATTAACCATGATGAAG+AGG | - | chr2_3:54729622-54729641 | Msa0299620:three_prime_UTR | 30.0% | |
| TTTAGTGACAGAATTAGAGA+AGG | + | chr2_3:54729938-54729957 | None:intergenic | 30.0% | |
| ! | TAGTCCCTTGACTTAATTTT+AGG | - | chr2_3:54730244-54730263 | Msa0299620:intron | 30.0% |
| ! | TTTTCATGTTAATTAGGGCA+TGG | - | chr2_3:54730844-54730863 | Msa0299620:intron | 30.0% |
| AAACAAAATCTGCATTGGAA+AGG | - | chr2_3:54730916-54730935 | Msa0299620:intron | 30.0% | |
| TCATGCTTCAATTTCTAACT+TGG | - | chr2_3:54731162-54731181 | Msa0299620:intron | 30.0% | |
| ! | CAAAAACCATTTTCATTGCT+AGG | + | chr2_3:54731296-54731315 | None:intergenic | 30.0% |
| ! | CTAGCAATGAAAATGGTTTT+TGG | - | chr2_3:54731294-54731313 | Msa0299620:exon | 30.0% |
| TGCAATTTCAAAATGTTGAG+TGG | + | chr2_3:54729600-54729619 | None:intergenic | 30.0% | |
| AGAAATTAACCATGATGAAG+AGG | - | chr2_3:54729622-54729641 | Msa0299620:three_prime_UTR | 30.0% | |
| TTTAGTGACAGAATTAGAGA+AGG | + | chr2_3:54729938-54729957 | None:intergenic | 30.0% | |
| ! | TAGTCCCTTGACTTAATTTT+AGG | - | chr2_3:54730244-54730263 | Msa0299620:intron | 30.0% |
| ! | TTTTCATGTTAATTAGGGCA+TGG | - | chr2_3:54730844-54730863 | Msa0299620:intron | 30.0% |
| AAACAAAATCTGCATTGGAA+AGG | - | chr2_3:54730916-54730935 | Msa0299620:intron | 30.0% | |
| TCATGCTTCAATTTCTAACT+TGG | - | chr2_3:54731162-54731181 | Msa0299620:intron | 30.0% | |
| ! | CAAAAACCATTTTCATTGCT+AGG | + | chr2_3:54731296-54731315 | None:intergenic | 30.0% |
| ! | CTAGCAATGAAAATGGTTTT+TGG | - | chr2_3:54731294-54731313 | Msa0299620:exon | 30.0% |
| GAACTAAGAAGAACATCTCA+AGG | - | chr2_3:54729566-54729585 | Msa0299620:three_prime_UTR | 35.0% | |
| AACCATGATGAAGAGGAATT+TGG | - | chr2_3:54729629-54729648 | Msa0299620:three_prime_UTR | 35.0% | |
| AAGGAAGATCAAAACATACG+CGG | - | chr2_3:54730935-54730954 | Msa0299620:intron | 35.0% | |
| TATAACCAATTCTATGGGAC+AGG | + | chr2_3:54731129-54731148 | None:intergenic | 35.0% | |
| TTTCTCTCTGTTGTCAAACA+TGG | - | chr2_3:54731258-54731277 | Msa0299620:CDS | 35.0% | |
| GAACTAAGAAGAACATCTCA+AGG | - | chr2_3:54729566-54729585 | Msa0299620:three_prime_UTR | 35.0% | |
| AACCATGATGAAGAGGAATT+TGG | - | chr2_3:54729629-54729648 | Msa0299620:three_prime_UTR | 35.0% | |
| AAGGAAGATCAAAACATACG+CGG | - | chr2_3:54730935-54730954 | Msa0299620:intron | 35.0% | |
| TATAACCAATTCTATGGGAC+AGG | + | chr2_3:54731129-54731148 | None:intergenic | 35.0% | |
| TTTCTCTCTGTTGTCAAACA+TGG | - | chr2_3:54731258-54731277 | Msa0299620:CDS | 35.0% | |
| GACCAAATTCCTCTTCATCA+TGG | + | chr2_3:54729634-54729653 | None:intergenic | 40.0% | |
| TTCCAATCATCACCTCTTCA+AGG | - | chr2_3:54729688-54729707 | Msa0299620:three_prime_UTR | 40.0% | |
| GGACATTCAGATCTTGATGT+AGG | - | chr2_3:54730865-54730884 | Msa0299620:intron | 40.0% | |
| GGGCAAAACAAAATCTGCAT+TGG | - | chr2_3:54730911-54730930 | Msa0299620:intron | 40.0% | |
| GTTATGGCACATGCATTTGT+AGG | + | chr2_3:54731097-54731116 | None:intergenic | 40.0% | |
| ! | GTTGTCAAACATGGTGGAAA+CGG | - | chr2_3:54731267-54731286 | Msa0299620:CDS | 40.0% |
| CGGTTTCCTAGCAATGAAAA+TGG | - | chr2_3:54731287-54731306 | Msa0299620:CDS | 40.0% | |
| GACCAAATTCCTCTTCATCA+TGG | + | chr2_3:54729634-54729653 | None:intergenic | 40.0% | |
| TTCCAATCATCACCTCTTCA+AGG | - | chr2_3:54729688-54729707 | Msa0299620:three_prime_UTR | 40.0% | |
| GGACATTCAGATCTTGATGT+AGG | - | chr2_3:54730865-54730884 | Msa0299620:intron | 40.0% | |
| GGGCAAAACAAAATCTGCAT+TGG | - | chr2_3:54730911-54730930 | Msa0299620:intron | 40.0% | |
| GTTATGGCACATGCATTTGT+AGG | + | chr2_3:54731097-54731116 | None:intergenic | 40.0% | |
| ! | GTTGTCAAACATGGTGGAAA+CGG | - | chr2_3:54731267-54731286 | Msa0299620:CDS | 40.0% |
| CGGTTTCCTAGCAATGAAAA+TGG | - | chr2_3:54731287-54731306 | Msa0299620:CDS | 40.0% | |
| TGCCTTGAAGAGGTGATGAT+TGG | + | chr2_3:54729693-54729712 | None:intergenic | 45.0% | |
| GTGACTTATGTGCCTTGAAG+AGG | + | chr2_3:54729703-54729722 | None:intergenic | 45.0% | |
| GAAGATCAAAACATACGCGG+CGG | - | chr2_3:54730938-54730957 | Msa0299620:intron | 45.0% | |
| ATCATGCTCACCATGCAGAT+TGG | - | chr2_3:54731017-54731036 | Msa0299620:intron | 45.0% | |
| ! | CTCACCATGCAGATTGGTTA+TGG | - | chr2_3:54731023-54731042 | Msa0299620:intron | 45.0% |
| CTGACCATAACCAATCTGCA+TGG | + | chr2_3:54731030-54731049 | None:intergenic | 45.0% | |
| ACATGATTCAGCCTCTGCAA+GGG | + | chr2_3:54731067-54731086 | None:intergenic | 45.0% | |
| AGAGGCTGAATCATGTCCAA+TGG | - | chr2_3:54731071-54731090 | Msa0299620:intron | 45.0% | |
| CACATGCATTTGTAGGCCAT+TGG | + | chr2_3:54731090-54731109 | None:intergenic | 45.0% | |
| !! | GGACAGGATAGGACTTGTTA+TGG | + | chr2_3:54731113-54731132 | None:intergenic | 45.0% |
| CCAATTCTATGGGACAGGAT+AGG | + | chr2_3:54731124-54731143 | None:intergenic | 45.0% | |
| CCTATCCTGTCCCATAGAAT+TGG | - | chr2_3:54731121-54731140 | Msa0299620:intron | 45.0% | |
| CTCTCTGTTGTCAAACATGG+TGG | - | chr2_3:54731261-54731280 | Msa0299620:CDS | 45.0% | |
| TGCCTTGAAGAGGTGATGAT+TGG | + | chr2_3:54729693-54729712 | None:intergenic | 45.0% | |
| GTGACTTATGTGCCTTGAAG+AGG | + | chr2_3:54729703-54729722 | None:intergenic | 45.0% | |
| GAAGATCAAAACATACGCGG+CGG | - | chr2_3:54730938-54730957 | Msa0299620:intron | 45.0% | |
| ATCATGCTCACCATGCAGAT+TGG | - | chr2_3:54731017-54731036 | Msa0299620:intron | 45.0% | |
| ! | CTCACCATGCAGATTGGTTA+TGG | - | chr2_3:54731023-54731042 | Msa0299620:intron | 45.0% |
| CTGACCATAACCAATCTGCA+TGG | + | chr2_3:54731030-54731049 | None:intergenic | 45.0% | |
| ACATGATTCAGCCTCTGCAA+GGG | + | chr2_3:54731067-54731086 | None:intergenic | 45.0% | |
| AGAGGCTGAATCATGTCCAA+TGG | - | chr2_3:54731071-54731090 | Msa0299620:intron | 45.0% | |
| CACATGCATTTGTAGGCCAT+TGG | + | chr2_3:54731090-54731109 | None:intergenic | 45.0% | |
| !! | GGACAGGATAGGACTTGTTA+TGG | + | chr2_3:54731113-54731132 | None:intergenic | 45.0% |
| CCAATTCTATGGGACAGGAT+AGG | + | chr2_3:54731124-54731143 | None:intergenic | 45.0% | |
| CCTATCCTGTCCCATAGAAT+TGG | - | chr2_3:54731121-54731140 | Msa0299620:intron | 45.0% | |
| CTCTCTGTTGTCAAACATGG+TGG | - | chr2_3:54731261-54731280 | Msa0299620:CDS | 45.0% | |
| !! | TTAAAAATACTTAAATTAAT+AGG | - | chr2_3:54729884-54729903 | Msa0299620:CDS | 5.0% |
| !! | TAAAAATACTTAAATTAATA+GGG | - | chr2_3:54729885-54729904 | Msa0299620:CDS | 5.0% |
| !! | TTAAAAATACTTAAATTAAT+AGG | - | chr2_3:54729884-54729903 | Msa0299620:CDS | 5.0% |
| !! | TAAAAATACTTAAATTAATA+GGG | - | chr2_3:54729885-54729904 | Msa0299620:CDS | 5.0% |
| CCGCATGCATGAGAACAATC+CGG | + | chr2_3:54730997-54731016 | None:intergenic | 50.0% | |
| CCGGATTGTTCTCATGCATG+CGG | - | chr2_3:54730994-54731013 | Msa0299620:intron | 50.0% | |
| AGTTTGTGCATCCCTTGCAG+AGG | - | chr2_3:54731053-54731072 | Msa0299620:intron | 50.0% | |
| GACATGATTCAGCCTCTGCA+AGG | + | chr2_3:54731068-54731087 | None:intergenic | 50.0% | |
| CCGCATGCATGAGAACAATC+CGG | + | chr2_3:54730997-54731016 | None:intergenic | 50.0% | |
| CCGGATTGTTCTCATGCATG+CGG | - | chr2_3:54730994-54731013 | Msa0299620:intron | 50.0% | |
| AGTTTGTGCATCCCTTGCAG+AGG | - | chr2_3:54731053-54731072 | Msa0299620:intron | 50.0% | |
| GACATGATTCAGCCTCTGCA+AGG | + | chr2_3:54731068-54731087 | None:intergenic | 50.0% | |
| ATCAAAACATACGCGGCGGC+CGG | - | chr2_3:54730942-54730961 | Msa0299620:intron | 55.0% | |
| CCAGCTACTTGCATCGTGTC+CGG | + | chr2_3:54730964-54730983 | None:intergenic | 55.0% | |
| !! | CGATGCAAGTAGCTGGTTCG+AGG | - | chr2_3:54730968-54730987 | Msa0299620:intron | 55.0% |
| !! | AGTAGCTGGTTCGAGGTTGC+CGG | - | chr2_3:54730975-54730994 | Msa0299620:intron | 55.0% |
| ATCAAAACATACGCGGCGGC+CGG | - | chr2_3:54730942-54730961 | Msa0299620:intron | 55.0% | |
| CCAGCTACTTGCATCGTGTC+CGG | + | chr2_3:54730964-54730983 | None:intergenic | 55.0% | |
| !! | CGATGCAAGTAGCTGGTTCG+AGG | - | chr2_3:54730968-54730987 | Msa0299620:intron | 55.0% |
| !! | AGTAGCTGGTTCGAGGTTGC+CGG | - | chr2_3:54730975-54730994 | Msa0299620:intron | 55.0% |
| CCGGACACGATGCAAGTAGC+TGG | - | chr2_3:54730961-54730980 | Msa0299620:intron | 60.0% | |
| CCGGACACGATGCAAGTAGC+TGG | - | chr2_3:54730961-54730980 | Msa0299620:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 54729562 | 54731383 | 54729562 | ID=Msa0299620;Name=Msa0299620 |
| chr2_3 | mRNA | 54729562 | 54731383 | 54729562 | ID=Msa0299620-mRNA-1;Parent=Msa0299620;Name=Msa0299620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=71|1|1|1|1|1|2|246|125 |
| chr2_3 | exon | 54729562 | 54730085 | 54729562 | ID=Msa0299620-mRNA-1:exon:17476;Parent=Msa0299620-mRNA-1 |
| chr2_3 | exon | 54731213 | 54731383 | 54731213 | ID=Msa0299620-mRNA-1:exon:17475;Parent=Msa0299620-mRNA-1 |
| chr2_3 | five_prime_UTR | 54731313 | 54731383 | 54731313 | ID=Msa0299620-mRNA-1:five_prime_utr;Parent=Msa0299620-mRNA-1 |
| chr2_3 | CDS | 54731213 | 54731312 | 54731213 | ID=Msa0299620-mRNA-1:cds;Parent=Msa0299620-mRNA-1 |
| chr2_3 | CDS | 54729808 | 54730085 | 54729808 | ID=Msa0299620-mRNA-1:cds;Parent=Msa0299620-mRNA-1 |
| chr2_3 | three_prime_UTR | 54729562 | 54729807 | 54729562 | ID=Msa0299620-mRNA-1:three_prime_utr;Parent=Msa0299620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
