AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1424240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1424240 MtrunA17_Chr4g0055541 96.124 258 6 1 1 254 1 258 0.0 503
Msa1424240 MtrunA17_Chr4g0055531 76.923 78 7 3 176 253 1 67 5.77e-31 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1424240 AT4G17600.1 56.226 265 92 6 9 253 1 261 3.69e-94 278
Msa1424240 AT5G47110.1 54.231 260 98 3 5 250 1 253 1.54e-92 273

Find 79 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTAAGTGAATGTGAAAT+TGG 0.145280 tig0025655:-15767 Msa1424240:three_prime_UTR
TTGTCATTGCTGGATGATTC+TGG 0.199235 tig0025655:+16404 None:intergenic
CCTGAAGCTGAACTACTTAA+TGG 0.270926 tig0025655:-16320 Msa1424240:intron
CTTGGGATTTGATGCAGTTT+AGG 0.275261 tig0025655:-17867 Msa1424240:CDS
CAGAGGCAAGAAGGAGAAAA+TGG 0.288966 tig0025655:-16439 Msa1424240:CDS
AGGATTCTTTATGACATATC+TGG 0.306621 tig0025655:-16176 Msa1424240:CDS
CTAGATGGGTTGCTGGGACT+TGG 0.308595 tig0025655:-17885 Msa1424240:CDS
GTTGTTGCTGTGATGGGGTT+TGG 0.321435 tig0025655:+18104 None:intergenic
TCCTGTTGCTGAGGAGGTTA+AGG 0.324053 tig0025655:-17929 Msa1424240:CDS
AATATCTCTGTTGGGACAAA+TGG 0.327366 tig0025655:-17967 Msa1424240:CDS
AACAACTATGTCTATGTCTA+TGG 0.327759 tig0025655:-18175 Msa1424240:CDS
CCATTAAGTAGTTCAGCTTC+AGG 0.328770 tig0025655:+16320 None:intergenic
TGCAAAAGAAGTTGTTCATT+TGG 0.330402 tig0025655:+16122 None:intergenic
GTGGATCCTAGATGGGTTGC+TGG 0.337107 tig0025655:-17892 Msa1424240:CDS
TAGATGGGTTGCTGGGACTT+GGG 0.360135 tig0025655:-17884 Msa1424240:CDS
GCAGGTCGTGCCGCAATGAT+AGG 0.391276 tig0025655:-16196 Msa1424240:intron
CACTACAGGATTGTCATTGC+TGG 0.391810 tig0025655:+16394 None:intergenic
TCTATCTCATCCTTTGAGAA+TGG 0.407619 tig0025655:+18325 None:intergenic
ACCTTAACCTCCTCAGCAAC+AGG 0.409183 tig0025655:+17928 None:intergenic
AAAGGAGAGAGGGAGAATAA+AGG 0.426062 tig0025655:+18048 None:intergenic
TGTCATTGCTGGATGATTCT+GGG 0.426373 tig0025655:+16405 None:intergenic
CACCTCCATTGTACCTTGGT+GGG 0.440364 tig0025655:-16366 Msa1424240:CDS
CCATTGTACCTTGGTGGGCA+TGG 0.442929 tig0025655:-16361 Msa1424240:CDS
ACACCTCCATTGTACCTTGG+TGG 0.444291 tig0025655:-16367 Msa1424240:CDS
GAGATAGAAGTGAGAGAGAG+AGG 0.445148 tig0025655:-18310 Msa1424240:five_prime_UTR
AAAGAGGTTGTTGCTGTGAT+GGG 0.448159 tig0025655:+18098 None:intergenic
TCTTAAGTGAATGTGAAATT+GGG 0.450263 tig0025655:-15766 Msa1424240:three_prime_UTR
GAGGAGGTTAAGGTTTCTAC+TGG 0.454044 tig0025655:-17919 Msa1424240:CDS
CTTGGTGGGCATGGATCAAA+AGG 0.454670 tig0025655:-16352 Msa1424240:CDS
CTATCTCATCCTTTGAGAAT+GGG 0.455940 tig0025655:+18326 None:intergenic
TCTCCTTTGAGAGCTTCAGC+TGG 0.464697 tig0025655:-18033 Msa1424240:CDS
CAAGTCCCAGCAACCCATCT+AGG 0.465863 tig0025655:+17886 None:intergenic
GTCTGAGAGTGAGAGTAAAG+AGG 0.470984 tig0025655:+18082 None:intergenic
TGCTGTTCCTGTTGCTGAGG+AGG 0.473204 tig0025655:-17935 Msa1424240:CDS
GTAGTTCAGCTTCAGGGAGA+TGG 0.482198 tig0025655:+16327 None:intergenic
TGGGATGCTGTTATTGATGC+TGG 0.487504 tig0025655:-17826 Msa1424240:intron
TATCTGGTCGATAGCTTGAC+AGG 0.493166 tig0025655:-16160 Msa1424240:CDS
ACAAGCAATGGCAAGCAACT+TGG 0.494549 tig0025655:-16000 Msa1424240:CDS
GTCCCAACAGAGATATTCTC+AGG 0.497364 tig0025655:+17973 None:intergenic
CTGAAGCTCTCAAAGGAGAG+AGG 0.497577 tig0025655:+18037 None:intergenic
ATATCTCTGTTGGGACAAAT+GGG 0.501225 tig0025655:-17966 Msa1424240:CDS
CATTAAGTAGTTCAGCTTCA+GGG 0.512069 tig0025655:+16321 None:intergenic
CACCTGAGAATATCTCTGTT+GGG 0.512810 tig0025655:-17975 Msa1424240:CDS
AACTCTTCTCTTCGTAGCAG+TGG 0.516899 tig0025655:-16098 Msa1424240:CDS
GTGGTTGAGATTCTAGTAAG+AGG 0.522550 tig0025655:+18141 None:intergenic
TGGATCCTAGATGGGTTGCT+GGG 0.524372 tig0025655:-17891 Msa1424240:CDS
CCACCTGAGAATATCTCTGT+TGG 0.527412 tig0025655:-17976 Msa1424240:CDS
TAAAGAGGTTGTTGCTGTGA+TGG 0.527773 tig0025655:+18097 None:intergenic
TGAAGCTCTCAAAGGAGAGA+GGG 0.529054 tig0025655:+18038 None:intergenic
ACTCTTCTCTTCGTAGCAGT+GGG 0.529406 tig0025655:-16097 Msa1424240:CDS
CATAGACATAGTTGTTGACA+TGG 0.536011 tig0025655:+18182 None:intergenic
TTGACACCTCCATTGTACCT+TGG 0.538618 tig0025655:-16370 Msa1424240:CDS
TTCTGCTGTTCCTGTTGCTG+AGG 0.541706 tig0025655:-17938 Msa1424240:CDS
GCACTAGCAAGATTATAATA+CGG 0.556628 tig0025655:+15885 None:intergenic
GAGAGAGGGAGAATAAAGGA+AGG 0.556971 tig0025655:+18052 None:intergenic
GCAATGGCAAGCAACTTGGC+AGG 0.558161 tig0025655:-15996 Msa1424240:CDS
GTTCCAGCTGAAGCTCTCAA+AGG 0.564912 tig0025655:+18030 None:intergenic
ATGGAGGTGTCAAACACTAC+AGG 0.565063 tig0025655:+16380 None:intergenic
ACAGAGATATTCTCAGGTGG+TGG 0.567214 tig0025655:+17979 None:intergenic
CCATGCCCACCAAGGTACAA+TGG 0.590303 tig0025655:+16361 None:intergenic
AAGAGGTTGTTGCTGTGATG+GGG 0.604087 tig0025655:+18099 None:intergenic
ACTTCTCATCAGGAAGAATG+AGG 0.608234 tig0025655:-16068 Msa1424240:CDS
ATTAAGAGACAAAATGCGGT+AGG 0.608595 tig0025655:+15916 None:intergenic
TCTTCTCTTCGTAGCAGTGG+GGG 0.615034 tig0025655:-16095 Msa1424240:CDS
GTACTTGTGCCCATTCTCAA+AGG 0.615059 tig0025655:-18335 Msa1424240:five_prime_UTR
CTTCTCTTCGTAGCAGTGGG+GGG 0.622227 tig0025655:-16094 Msa1424240:CDS
CTCTTCTCTTCGTAGCAGTG+GGG 0.624987 tig0025655:-16096 Msa1424240:CDS
CATAAAGAATCCTATCATTG+CGG 0.653449 tig0025655:+16186 None:intergenic
GTGAAGTGAACTAGTGAGGT+GGG 0.653474 tig0025655:+18372 None:intergenic
GTCGATAGCTTGACAGGAGT+AGG 0.654568 tig0025655:-16154 Msa1424240:CDS
TTTGGAGAGTGAAGAATGAG+TGG 0.655905 tig0025655:+18122 None:intergenic
AATAACAGCATCCCAATCAG+TGG 0.659865 tig0025655:+17834 None:intergenic
ATGATGTTAGTATAAGTGTG+TGG 0.677703 tig0025655:+18221 None:intergenic
ACAAGTACAACAACACAATG+AGG 0.689410 tig0025655:+18350 None:intergenic
CCAACAGAGATATTCTCAGG+TGG 0.707278 tig0025655:+17976 None:intergenic
TGCCCACCAAGGTACAATGG+AGG 0.708718 tig0025655:+16364 None:intergenic
GGTGAAGTGAACTAGTGAGG+TGG 0.717626 tig0025655:+18371 None:intergenic
TGAGGTGAAGTGAACTAGTG+AGG 0.734267 tig0025655:+18368 None:intergenic
CTATATTAAGAGACAAAATG+CGG 0.743314 tig0025655:+15912 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACAATTATTTAATTAGAA+GGG + tig0025655:17469-17488 None:intergenic 10.0%
!!! AAATTTAGAATAACTAAATC+AGG + tig0025655:16598-16617 None:intergenic 15.0%
!!! ATTTAGTGATTAATTTGTTA+AGG + tig0025655:16722-16741 None:intergenic 15.0%
!! CTTACAATTATTTAATTAGA+AGG + tig0025655:17470-17489 None:intergenic 15.0%
!! AGAAATAGAAATAAAATTTG+AGG + tig0025655:17599-17618 None:intergenic 15.0%
!!! TATTTCTATTTCTATATACT+AGG - tig0025655:17606-17625 Msa1424240:intron 15.0%
!!! TGATACTTTTAAGAAATTAT+TGG - tig0025655:18081-18100 Msa1424240:CDS 15.0%
!! AAACAATGAACTTAAAGAAA+AGG + tig0025655:16333-16352 None:intergenic 20.0%
!! TATGTTAACTGAATAATAAG+TGG - tig0025655:16485-16504 Msa1424240:intron 20.0%
!! CTACTAATCATATTGATATA+GGG - tig0025655:17523-17542 Msa1424240:intron 20.0%
!!! TACTTTTAAGAAATTATTGG+AGG - tig0025655:18084-18103 Msa1424240:CDS 20.0%
! ACTTAAAGAAAAGGTAGAAA+AGG + tig0025655:16324-16343 None:intergenic 25.0%
!!! CTTTAAGTTCATTGTTTTGT+AGG - tig0025655:16336-16355 Msa1424240:CDS 25.0%
! TTAAACTCTATAGTAGGAAA+TGG + tig0025655:16445-16464 None:intergenic 25.0%
! AGGAAATTAAACTCTATAGT+AGG + tig0025655:16451-16470 None:intergenic 25.0%
! AACATAAATCATCAATCAAG+AGG + tig0025655:16471-16490 None:intergenic 25.0%
!!! GATTAATTTGTTAAGGCAAT+GGG + tig0025655:16715-16734 None:intergenic 25.0%
!!! TGATTAATTTGTTAAGGCAA+TGG + tig0025655:16716-16735 None:intergenic 25.0%
!! TCTGTTAATAAAAAAAGCAC+AGG - tig0025655:17092-17111 Msa1424240:intron 25.0%
!! CTGTTAATAAAAAAAGCACA+GGG - tig0025655:17093-17112 Msa1424240:intron 25.0%
!! TGTTAATAAAAAAAGCACAG+GGG - tig0025655:17094-17113 Msa1424240:intron 25.0%
!! AGTAGAAAGTTAAAGAGTAT+AGG + tig0025655:17211-17230 None:intergenic 25.0%
! AAAATGCAGAAGAAACAAAT+TGG + tig0025655:17239-17258 None:intergenic 25.0%
!!! AATTTGTTTCTTCTGCATTT+TGG - tig0025655:17238-17257 Msa1424240:intron 25.0%
! TAGACGGTAATTGTATAATA+GGG - tig0025655:17407-17426 Msa1424240:intron 25.0%
!! ATCCTCTTTTTATGATCAAA+AGG - tig0025655:17491-17510 Msa1424240:intron 25.0%
!! TCCTCTTTTTATGATCAAAA+GGG - tig0025655:17492-17511 Msa1424240:intron 25.0%
! ATCAATATGATTAGTAGCAA+TGG + tig0025655:17520-17539 None:intergenic 25.0%
! GCTACTAATCATATTGATAT+AGG - tig0025655:17522-17541 Msa1424240:intron 25.0%
!! AATGTACTCATTTTCTGATT+TGG - tig0025655:17647-17666 Msa1424240:intron 25.0%
! AAAATGAAACGAGAAAGTAA+AGG - tig0025655:17845-17864 Msa1424240:CDS 25.0%
! CTATATTAAGAGACAAAATG+CGG + tig0025655:18213-18232 None:intergenic 25.0%
! TTCTTAAGTGAATGTGAAAT+TGG - tig0025655:18355-18374 Msa1424240:five_prime_UTR 25.0%
! TCTTAAGTGAATGTGAAATT+GGG - tig0025655:18356-18375 Msa1424240:five_prime_UTR 25.0%
ATGATGTTAGTATAAGTGTG+TGG + tig0025655:15904-15923 None:intergenic 30.0%
AACAACTATGTCTATGTCTA+TGG - tig0025655:15947-15966 Msa1424240:exon 30.0%
!!! GAGAATAAAGGAAGGTTTTT+TGG + tig0025655:16065-16084 None:intergenic 30.0%
TTGATGCAGTTTAGGAAAAA+TGG - tig0025655:16263-16282 Msa1424240:intron 30.0%
TGAAATTCGTTTACTTCCAT+AGG + tig0025655:16532-16551 None:intergenic 30.0%
!!! GAAGAAATCTGTGTTTTTTG+TGG - tig0025655:16570-16589 Msa1424240:intron 30.0%
AAGGATTATGTAGGAGATTT+AGG - tig0025655:16665-16684 Msa1424240:intron 30.0%
ACTAAATATTACCCACATAG+TGG - tig0025655:16735-16754 Msa1424240:intron 30.0%
CTAAATATTACCCACATAGT+GGG - tig0025655:16736-16755 Msa1424240:intron 30.0%
! TAGTGTATTTAGTTTACTGC+TGG - tig0025655:16865-16884 Msa1424240:intron 30.0%
TTTATCTTAACAGCTGCTAA+AGG + tig0025655:17057-17076 None:intergenic 30.0%
! TTAAAGAGTATAGGAAGACT+AGG + tig0025655:17202-17221 None:intergenic 30.0%
GTAGACGGTAATTGTATAAT+AGG - tig0025655:17406-17425 Msa1424240:intron 30.0%
ATTAGAAGGGTAAAGATCAA+AGG + tig0025655:17456-17475 None:intergenic 30.0%
! CCTCTTTTTATGATCAAAAG+GGG - tig0025655:17493-17512 Msa1424240:intron 30.0%
! CTCTTTTTATGATCAAAAGG+GGG - tig0025655:17494-17513 Msa1424240:intron 30.0%
!!! AAAGGTTGTTTTTCGATAAG+AGG - tig0025655:17863-17882 Msa1424240:CDS 30.0%
!!! AAGGTTGTTTTTCGATAAGA+GGG - tig0025655:17864-17883 Msa1424240:CDS 30.0%
ACTTTGTTAACCTTTCTTCT+TGG - tig0025655:17896-17915 Msa1424240:CDS 30.0%
CTTTGTTAACCTTTCTTCTT+GGG - tig0025655:17897-17916 Msa1424240:CDS 30.0%
CATAAAGAATCCTATCATTG+CGG + tig0025655:17939-17958 None:intergenic 30.0%
AGGATTCTTTATGACATATC+TGG - tig0025655:17946-17965 Msa1424240:CDS 30.0%
TGCAAAAGAAGTTGTTCATT+TGG + tig0025655:18003-18022 None:intergenic 30.0%
! CTACATTTTATGACAAGCAA+TGG - tig0025655:18110-18129 Msa1424240:CDS 30.0%
CACTTCCAAAAAAGATTAGT+GGG - tig0025655:18162-18181 Msa1424240:CDS 30.0%
!!! ACAATCCCACTAATCTTTTT+TGG + tig0025655:18170-18189 None:intergenic 30.0%
GCACTAGCAAGATTATAATA+CGG + tig0025655:18240-18259 None:intergenic 30.0%
! TTTTTGTATGTTCGCAATGT+AGG - tig0025655:18328-18347 Msa1424240:five_prime_UTR 30.0%
ACAAGTACAACAACACAATG+AGG + tig0025655:15775-15794 None:intergenic 35.0%
! CTATCTCATCCTTTGAGAAT+GGG + tig0025655:15799-15818 None:intergenic 35.0%
! TCTATCTCATCCTTTGAGAA+TGG + tig0025655:15800-15819 None:intergenic 35.0%
CATAGACATAGTTGTTGACA+TGG + tig0025655:15943-15962 None:intergenic 35.0%
AATATCTCTGTTGGGACAAA+TGG - tig0025655:16155-16174 Msa1424240:CDS 35.0%
ATATCTCTGTTGGGACAAAT+GGG - tig0025655:16156-16175 Msa1424240:CDS 35.0%
!!! TAAGGTTTCTACTGGTTTTG+TGG - tig0025655:16211-16230 Msa1424240:intron 35.0%
! GAAAAATGGTACCACTGATT+GGG - tig0025655:16277-16296 Msa1424240:intron 35.0%
CTGAATAATAAGTGGTACTG+TGG - tig0025655:16493-16512 Msa1424240:intron 35.0%
ACCACTAGACTAATTCTTCA+GGG + tig0025655:16626-16645 None:intergenic 35.0%
! AAGAATTAGTCTAGTGGTCT+GGG - tig0025655:16628-16647 Msa1424240:intron 35.0%
! ACTCTGAAGAAGGATTATGT+AGG - tig0025655:16656-16675 Msa1424240:intron 35.0%
AATAACCATTGATGAGTCCA+AGG + tig0025655:16810-16829 None:intergenic 35.0%
TCAATGGTTATTCCTTCTTC+TGG - tig0025655:16818-16837 Msa1424240:intron 35.0%
CAATGGTTATTCCTTCTTCT+GGG - tig0025655:16819-16838 Msa1424240:intron 35.0%
TCAAAAAGCAGTGTGTTTCA+TGG + tig0025655:16975-16994 None:intergenic 35.0%
!!! TGCTTTTTGAGTTGAAGAAG+AGG - tig0025655:16985-17004 Msa1424240:intron 35.0%
!! AAAGATCTGGTTTGTTGAGT+GGG - tig0025655:17010-17029 Msa1424240:intron 35.0%
! CTCTTGATTTTTGCAAAGCA+GGG + tig0025655:17132-17151 None:intergenic 35.0%
!! TGGTTTTACATGGAAAGACA+TGG - tig0025655:17266-17285 Msa1424240:intron 35.0%
TCTACATCAGTTTCATGCTT+TGG + tig0025655:17312-17331 None:intergenic 35.0%
ATGTAGACTTAGAGTCAGTT+TGG - tig0025655:17325-17344 Msa1424240:intron 35.0%
TGTAGACTTAGAGTCAGTTT+GGG - tig0025655:17326-17345 Msa1424240:intron 35.0%
AGTCAGTTTGGGTAAACTTA+TGG - tig0025655:17337-17356 Msa1424240:intron 35.0%
AAAAGTTTCTTGCAGTACAG+CGG - tig0025655:17372-17391 Msa1424240:intron 35.0%
! CCCCTTTTGATCATAAAAAG+AGG + tig0025655:17496-17515 None:intergenic 35.0%
! TCTCTTTTACAGTTGGCATA+AGG - tig0025655:17550-17569 Msa1424240:intron 35.0%
CATTAAGTAGTTCAGCTTCA+GGG + tig0025655:17804-17823 None:intergenic 35.0%
GCACTTCCAAAAAAGATTAG+TGG - tig0025655:18161-18180 Msa1424240:CDS 35.0%
ATTAAGAGACAAAATGCGGT+AGG + tig0025655:18209-18228 None:intergenic 35.0%
GTGGTTGAGATTCTAGTAAG+AGG + tig0025655:15984-16003 None:intergenic 40.0%
TTTGGAGAGTGAAGAATGAG+TGG + tig0025655:16003-16022 None:intergenic 40.0%
AAAGAGGTTGTTGCTGTGAT+GGG + tig0025655:16027-16046 None:intergenic 40.0%
TAAAGAGGTTGTTGCTGTGA+TGG + tig0025655:16028-16047 None:intergenic 40.0%
AAAGGAGAGAGGGAGAATAA+AGG + tig0025655:16077-16096 None:intergenic 40.0%
CACCTGAGAATATCTCTGTT+GGG - tig0025655:16147-16166 Msa1424240:CDS 40.0%
!!! TGGTTTTGTGGATCCTAGAT+GGG - tig0025655:16223-16242 Msa1424240:intron 40.0%
CTTGGGATTTGATGCAGTTT+AGG - tig0025655:16255-16274 Msa1424240:intron 40.0%
GGAAAAATGGTACCACTGAT+TGG - tig0025655:16276-16295 Msa1424240:intron 40.0%
AATAACAGCATCCCAATCAG+TGG + tig0025655:16291-16310 None:intergenic 40.0%
TAAGTGGTACTGTGGTAGTA+AGG - tig0025655:16501-16520 Msa1424240:intron 40.0%
TGGTAGTAAGGTTTCACCTA+TGG - tig0025655:16513-16532 Msa1424240:intron 40.0%
! TCCCTGAAGAATTAGTCTAG+TGG - tig0025655:16622-16641 Msa1424240:intron 40.0%
GACCACTAGACTAATTCTTC+AGG + tig0025655:16627-16646 None:intergenic 40.0%
! GAAGAATTAGTCTAGTGGTC+TGG - tig0025655:16627-16646 Msa1424240:intron 40.0%
! ATTACCCACATAGTGGGAAA+AGG - tig0025655:16742-16761 Msa1424240:intron 40.0%
! CTATTTGGCTGTATTGACGT+TGG + tig0025655:16910-16929 None:intergenic 40.0%
ATACAGCCAAATAGTTACCG+AGG - tig0025655:16916-16935 Msa1424240:intron 40.0%
TTGAGTCCTCGGTAACTATT+TGG + tig0025655:16925-16944 None:intergenic 40.0%
ATAGTTACCGAGGACTCAAT+AGG - tig0025655:16926-16945 Msa1424240:intron 40.0%
AAAGCAGTGTGTTTCATGGT+CGG + tig0025655:16971-16990 None:intergenic 40.0%
TGAAGAAGAGGTGAAAGATC+TGG - tig0025655:16997-17016 Msa1424240:intron 40.0%
!! GAAAGATCTGGTTTGTTGAG+TGG - tig0025655:17009-17028 Msa1424240:intron 40.0%
TTTGTTGAGTGGGAAGGATA+TGG - tig0025655:17020-17039 Msa1424240:intron 40.0%
GTGGGAAGGATATGGTAAAA+TGG - tig0025655:17028-17047 Msa1424240:intron 40.0%
! GCTCTTGATTTTTGCAAAGC+AGG + tig0025655:17133-17152 None:intergenic 40.0%
GCAGAAGAAACAAATTGGCA+AGG + tig0025655:17234-17253 None:intergenic 40.0%
!! TGTTTCTTCTGCATTTTGGC+AGG - tig0025655:17242-17261 Msa1424240:intron 40.0%
!! GTTTCTTCTGCATTTTGGCA+GGG - tig0025655:17243-17262 Msa1424240:intron 40.0%
TACATGGAAAGACATGGTTG+TGG - tig0025655:17272-17291 Msa1424240:intron 40.0%
! GGGTGATTCTCTTTTACAGT+TGG - tig0025655:17543-17562 Msa1424240:intron 40.0%
! TCCTTCTTGCCTCTGAAAAT+GGG + tig0025655:17678-17697 None:intergenic 40.0%
TGTCATTGCTGGATGATTCT+GGG + tig0025655:17720-17739 None:intergenic 40.0%
TTGTCATTGCTGGATGATTC+TGG + tig0025655:17721-17740 None:intergenic 40.0%
CCATTAAGTAGTTCAGCTTC+AGG + tig0025655:17805-17824 None:intergenic 40.0%
CCTGAAGCTGAACTACTTAA+TGG - tig0025655:17802-17821 Msa1424240:intron 40.0%
TGCATGATACCCAAGAAGAA+AGG + tig0025655:17909-17928 None:intergenic 40.0%
TTTCTTCTTGGGTATCATGC+AGG - tig0025655:17908-17927 Msa1424240:CDS 40.0%
ACTTCTCATCAGGAAGAATG+AGG - tig0025655:18054-18073 Msa1424240:CDS 40.0%
GTGAAGTGAACTAGTGAGGT+GGG + tig0025655:15753-15772 None:intergenic 45.0%
TGAGGTGAAGTGAACTAGTG+AGG + tig0025655:15757-15776 None:intergenic 45.0%
GTACTTGTGCCCATTCTCAA+AGG - tig0025655:15787-15806 Msa1424240:three_prime_UTR 45.0%
GAGATAGAAGTGAGAGAGAG+AGG - tig0025655:15812-15831 Msa1424240:three_prime_UTR 45.0%
AAGAGGTTGTTGCTGTGATG+GGG + tig0025655:16026-16045 None:intergenic 45.0%
GTCTGAGAGTGAGAGTAAAG+AGG + tig0025655:16043-16062 None:intergenic 45.0%
GAGAGAGGGAGAATAAAGGA+AGG + tig0025655:16073-16092 None:intergenic 45.0%
TGAAGCTCTCAAAGGAGAGA+GGG + tig0025655:16087-16106 None:intergenic 45.0%
ACAGAGATATTCTCAGGTGG+TGG + tig0025655:16146-16165 None:intergenic 45.0%
CCAACAGAGATATTCTCAGG+TGG + tig0025655:16149-16168 None:intergenic 45.0%
CCACCTGAGAATATCTCTGT+TGG - tig0025655:16146-16165 Msa1424240:CDS 45.0%
GTCCCAACAGAGATATTCTC+AGG + tig0025655:16152-16171 None:intergenic 45.0%
GAGGAGGTTAAGGTTTCTAC+TGG - tig0025655:16203-16222 Msa1424240:intron 45.0%
!!! CTGGTTTTGTGGATCCTAGA+TGG - tig0025655:16222-16241 Msa1424240:intron 45.0%
TGGGATGCTGTTATTGATGC+TGG - tig0025655:16296-16315 Msa1424240:intron 45.0%
! ATTAGTCTAGTGGTCTGGGT+TGG - tig0025655:16632-16651 Msa1424240:intron 45.0%
! CATGCCTTTTCCCACTATGT+GGG + tig0025655:16749-16768 None:intergenic 45.0%
AAGCACCTTGGACTCATCAA+TGG - tig0025655:16802-16821 Msa1424240:intron 45.0%
! TTCCTTCTTCTGGGAAATGC+CGG - tig0025655:16828-16847 Msa1424240:intron 45.0%
CACTAATGCATCAACCACAC+CGG + tig0025655:16850-16869 None:intergenic 45.0%
TATTGACGTTGGACTTTCCC+TGG + tig0025655:16899-16918 None:intergenic 45.0%
CCAAACACCTATTGAGTCCT+CGG + tig0025655:16936-16955 None:intergenic 45.0%
!! ATCTGGTTTGTTGAGTGGGA+AGG - tig0025655:17014-17033 Msa1424240:intron 45.0%
!! AAAAGCACAGGGGTTTTAGC+TGG - tig0025655:17104-17123 Msa1424240:intron 45.0%
TCAAGAGCCCTATAGCTTCT+CGG - tig0025655:17145-17164 Msa1424240:intron 45.0%
!! TTTGGCAGGGTGGTTTTACA+TGG - tig0025655:17256-17275 Msa1424240:intron 45.0%
! GCGGCTACTAGTTTAGTAGA+CGG - tig0025655:17391-17410 Msa1424240:intron 45.0%
! TTGGTCCTTCCCATTTTCAG+AGG - tig0025655:17666-17685 Msa1424240:intron 45.0%
! TCTTGCCTCTGAAAATGGGA+AGG + tig0025655:17674-17693 None:intergenic 45.0%
! TCCCATTTTCAGAGGCAAGA+AGG - tig0025655:17674-17693 Msa1424240:intron 45.0%
! CTCCTTCTTGCCTCTGAAAA+TGG + tig0025655:17679-17698 None:intergenic 45.0%
CAGAGGCAAGAAGGAGAAAA+TGG - tig0025655:17683-17702 Msa1424240:intron 45.0%
CACTACAGGATTGTCATTGC+TGG + tig0025655:17731-17750 None:intergenic 45.0%
!! ATGGAGGTGTCAAACACTAC+AGG + tig0025655:17745-17764 None:intergenic 45.0%
TTGACACCTCCATTGTACCT+TGG - tig0025655:17752-17771 Msa1424240:intron 45.0%
TATCTGGTCGATAGCTTGAC+AGG - tig0025655:17962-17981 Msa1424240:CDS 45.0%
AACTCTTCTCTTCGTAGCAG+TGG - tig0025655:18024-18043 Msa1424240:CDS 45.0%
ACTCTTCTCTTCGTAGCAGT+GGG - tig0025655:18025-18044 Msa1424240:CDS 45.0%
ACAAGCAATGGCAAGCAACT+TGG - tig0025655:18122-18141 Msa1424240:CDS 45.0%
GGTGAAGTGAACTAGTGAGG+TGG + tig0025655:15754-15773 None:intergenic 50.0%
! GTTGTTGCTGTGATGGGGTT+TGG + tig0025655:16021-16040 None:intergenic 50.0%
CTGAAGCTCTCAAAGGAGAG+AGG + tig0025655:16088-16107 None:intergenic 50.0%
! TCTCCTTTGAGAGCTTCAGC+TGG - tig0025655:16089-16108 Msa1424240:CDS 50.0%
GTTCCAGCTGAAGCTCTCAA+AGG + tig0025655:16095-16114 None:intergenic 50.0%
TTCTGCTGTTCCTGTTGCTG+AGG - tig0025655:16184-16203 Msa1424240:CDS 50.0%
TCCTGTTGCTGAGGAGGTTA+AGG - tig0025655:16193-16212 Msa1424240:CDS 50.0%
ACCTTAACCTCCTCAGCAAC+AGG + tig0025655:16197-16216 None:intergenic 50.0%
!! TGGATCCTAGATGGGTTGCT+GGG - tig0025655:16231-16250 Msa1424240:intron 50.0%
!! TAGATGGGTTGCTGGGACTT+GGG - tig0025655:16238-16257 Msa1424240:intron 50.0%
! CTGGGTTGGAACTCTGAAGA+AGG - tig0025655:16646-16665 Msa1424240:intron 50.0%
! CCATGCCTTTTCCCACTATG+TGG + tig0025655:16750-16769 None:intergenic 50.0%
! CCACATAGTGGGAAAAGGCA+TGG - tig0025655:16747-16766 Msa1424240:intron 50.0%
TTACTGCTGGCATGTGTTCC+AGG - tig0025655:16878-16897 Msa1424240:intron 50.0%
TACTGCTGGCATGTGTTCCA+GGG - tig0025655:16879-16898 Msa1424240:intron 50.0%
CCGAGGACTCAATAGGTGTT+TGG - tig0025655:16933-16952 Msa1424240:intron 50.0%
AACGTGGCCGAGAAGCTATA+GGG + tig0025655:17155-17174 None:intergenic 50.0%
ATCCACCATAGCCGTGTCAA+CGG + tig0025655:17178-17197 None:intergenic 50.0%
!! TCTTCTGCATTTTGGCAGGG+TGG - tig0025655:17246-17265 Msa1424240:intron 50.0%
ACACCTCCATTGTACCTTGG+TGG - tig0025655:17755-17774 Msa1424240:intron 50.0%
CACCTCCATTGTACCTTGGT+GGG - tig0025655:17756-17775 Msa1424240:intron 50.0%
! CTTTTGATCCATGCCCACCA+AGG + tig0025655:17772-17791 None:intergenic 50.0%
! CTTGGTGGGCATGGATCAAA+AGG - tig0025655:17770-17789 Msa1424240:intron 50.0%
GTAGTTCAGCTTCAGGGAGA+TGG + tig0025655:17798-17817 None:intergenic 50.0%
GTCGATAGCTTGACAGGAGT+AGG - tig0025655:17968-17987 Msa1424240:CDS 50.0%
CTCTTCTCTTCGTAGCAGTG+GGG - tig0025655:18026-18045 Msa1424240:CDS 50.0%
TCTTCTCTTCGTAGCAGTGG+GGG - tig0025655:18027-18046 Msa1424240:CDS 50.0%
TGCTGTTCCTGTTGCTGAGG+AGG - tig0025655:16187-16206 Msa1424240:CDS 55.0%
!! GTGGATCCTAGATGGGTTGC+TGG - tig0025655:16230-16249 Msa1424240:intron 55.0%
CAAGTCCCAGCAACCCATCT+AGG + tig0025655:16239-16258 None:intergenic 55.0%
!! CTAGATGGGTTGCTGGGACT+TGG - tig0025655:16237-16256 Msa1424240:intron 55.0%
TGTGTGCGTAGCAAGCACCT+TGG - tig0025655:16790-16809 Msa1424240:intron 55.0%
CACCGGCATTTCCCAGAAGA+AGG + tig0025655:16833-16852 None:intergenic 55.0%
! TCTTCTGGGAAATGCCGGTG+TGG - tig0025655:16833-16852 Msa1424240:intron 55.0%
GTGTGTTTCATGGTCGGCGT+TGG + tig0025655:16965-16984 None:intergenic 55.0%
GAACGTGGCCGAGAAGCTAT+AGG + tig0025655:17156-17175 None:intergenic 55.0%
ATAGCCGTGTCAACGGAACG+TGG + tig0025655:17171-17190 None:intergenic 55.0%
ACGTTCCGTTGACACGGCTA+TGG - tig0025655:17170-17189 Msa1424240:intron 55.0%
TTCCGTTGACACGGCTATGG+TGG - tig0025655:17173-17192 Msa1424240:intron 55.0%
TGCCCACCAAGGTACAATGG+AGG + tig0025655:17761-17780 None:intergenic 55.0%
CCATGCCCACCAAGGTACAA+TGG + tig0025655:17764-17783 None:intergenic 55.0%
! CCATTGTACCTTGGTGGGCA+TGG - tig0025655:17761-17780 Msa1424240:intron 55.0%
CTTCTCTTCGTAGCAGTGGG+GGG - tig0025655:18028-18047 Msa1424240:CDS 55.0%
!! TGGGGGGAGTACTTCTCATC+AGG - tig0025655:18044-18063 Msa1424240:CDS 55.0%
GCAATGGCAAGCAACTTGGC+AGG - tig0025655:18126-18145 Msa1424240:CDS 55.0%
TCGGCCACGTTCCGTTGACA+CGG - tig0025655:17164-17183 Msa1424240:intron 60.0%
GCAGGTCGTGCCGCAATGAT+AGG - tig0025655:17926-17945 Msa1424240:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0025655 gene 15739 18405 15739 ID=Msa1424240;Name=Msa1424240
tig0025655 mRNA 15739 18405 15739 ID=Msa1424240-mRNA-1;Parent=Msa1424240;Name=Msa1424240-mRNA-1;_AED=0.17;_eAED=0.17;_QI=203|1|1|1|1|1|3|225|254
tig0025655 exon 15739 16214 15739 ID=Msa1424240-mRNA-1:exon:3697;Parent=Msa1424240-mRNA-1
tig0025655 exon 16321 16458 16321 ID=Msa1424240-mRNA-1:exon:3696;Parent=Msa1424240-mRNA-1
tig0025655 exon 17827 18405 17827 ID=Msa1424240-mRNA-1:exon:3695;Parent=Msa1424240-mRNA-1
tig0025655 five_prime_UTR 18203 18405 18203 ID=Msa1424240-mRNA-1:five_prime_utr;Parent=Msa1424240-mRNA-1
tig0025655 CDS 17827 18202 17827 ID=Msa1424240-mRNA-1:cds;Parent=Msa1424240-mRNA-1
tig0025655 CDS 16321 16458 16321 ID=Msa1424240-mRNA-1:cds;Parent=Msa1424240-mRNA-1
tig0025655 CDS 15964 16214 15964 ID=Msa1424240-mRNA-1:cds;Parent=Msa1424240-mRNA-1
tig0025655 three_prime_UTR 15739 15963 15739 ID=Msa1424240-mRNA-1:three_prime_utr;Parent=Msa1424240-mRNA-1
Gene Sequence

>Msa1424240

ATGTCAACAACTATGTCTATGTCTATGGCTTCTTTTTCTCCTCTTACTAGAATCTCAACCACTCATTCTTCACTCTCCAAACCCCATCACAGCAACAACCTCTTTACTCTCACTCTCAGACCAAAAAACCTTCCTTTATTCTCCCTCTCTCCTTTGAGAGCTTCAGCTGGAACTTCTGATTCAGCTGAAACTGCAGTGAAACCACCACCTGAGAATATCTCTGTTGGGACAAATGGGTCTGCTTCTGCTGTTCCTGTTGCTGAGGAGGTTAAGGTTTCTACTGGTTTTGTGGATCCTAGATGGGTTGCTGGGACTTGGGATTTGATGCAGTTTAGGAAAAATGGTACCACTGATTGGGATGCTGTTATTGATGCTGAGGCAAGAAGGAGAAAATGGCTCGAGACTAACCCAGAATCATCCAGCAATGACAATCCTGTAGTGTTTGACACCTCCATTGTACCTTGGTGGGCATGGATCAAAAGGTTCCATCTCCCTGAAGCTGAACTACTTAATGGTCGTGCCGCAATGATAGGATTCTTTATGACATATCTGGTCGATAGCTTGACAGGAGTAGGTCTTGTTGACCAAATGAACAACTTCTTTTGCAAAACTCTTCTCTTCGTAGCAGTGGGGGGAGTACTTCTCATCAGGAAGAATGAGGATGTTGATACTTTTAAGAAATTATTGGAGGAGACTACATTTTATGACAAGCAATGGCAAGCAACTTGGCAGGATGAGAACTCAAGCACTTCCAAAAAAGATTAG

Protein sequence

>Msa1424240

MSTTMSMSMASFSPLTRISTTHSSLSKPHHSNNLFTLTLRPKNLPLFSLSPLRASAGTSDSAETAVKPPPENISVGTNGSASAVPVAEEVKVSTGFVDPRWVAGTWDLMQFRKNGTTDWDAVIDAEARRRKWLETNPESSSNDNPVVFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMTYLVDSLTGVGLVDQMNNFFCKTLLFVAVGGVLLIRKNEDVDTFKKLLEETTFYDKQWQATWQDENSSTSKKD*